RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16532
         (84 letters)



>d2nx2a1 c.129.1.2 (A:1-177) Hypothetical protein YpsA {Bacillus
           subtilis [TaxId: 1423]}
          Length = 177

 Score = 25.9 bits (57), Expect = 0.47
 Identities = 5/25 (20%), Positives = 12/25 (48%)

Query: 52  VDKLGNKYYENKHYFYGRNRWVVYH 76
              L ++ YE+   F  +N++ +  
Sbjct: 105 EASLTHRPYESPLQFKQKNQFFIDK 129


>d1vpta_ c.66.1.25 (A:) Polymerase regulatory subunit VP39 {Vaccinia
           virus [TaxId: 10245]}
          Length = 297

 Score = 24.8 bits (54), Expect = 1.5
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 45  KFGTLVGVDKLGNKYYENKHYFYG---RNRWVVYHEKFGLNYD 84
           +   L  V K     YE K Y+     RN+ VV  +     YD
Sbjct: 217 ENMRLTRVTKSDAVNYEKKMYYLNKIVRNKVVVNFDYPNQEYD 259


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 324,417
Number of extensions: 12343
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 5
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)