Query psy16535
Match_columns 333
No_of_seqs 261 out of 2575
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 23:44:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10660 tilS tRNA(Ile)-lysidi 100.0 5.2E-33 1.1E-37 277.8 22.7 266 15-297 24-314 (436)
2 PF01171 ATP_bind_3: PP-loop f 100.0 1.1E-28 2.3E-33 219.3 13.1 157 17-176 10-181 (182)
3 COG0037 MesJ tRNA(Ile)-lysidin 100.0 5E-27 1.1E-31 222.6 20.4 198 36-233 48-268 (298)
4 PRK10696 tRNA 2-thiocytidine b 99.9 2.2E-25 4.8E-30 208.7 16.8 182 16-203 39-243 (258)
5 TIGR02432 lysidine_TilS_N tRNA 99.9 6.1E-21 1.3E-25 169.7 14.6 152 28-179 18-189 (189)
6 cd01992 PP-ATPase N-terminal d 99.8 5.5E-20 1.2E-24 162.6 12.7 142 38-179 30-185 (185)
7 cd01993 Alpha_ANH_like_II This 99.8 3.1E-18 6.7E-23 150.9 13.0 129 40-168 34-184 (185)
8 KOG2840|consensus 99.6 2.1E-15 4.6E-20 142.4 10.2 218 23-240 65-316 (347)
9 TIGR00269 conserved hypothetic 99.6 1.5E-14 3.2E-19 117.8 8.4 92 141-232 9-102 (104)
10 PF01171 ATP_bind_3: PP-loop f 99.4 7.6E-14 1.7E-18 123.9 5.3 105 13-127 72-181 (182)
11 PRK08349 hypothetical protein; 99.4 1.8E-12 3.9E-17 116.8 13.3 103 81-186 83-197 (198)
12 PRK00143 mnmA tRNA-specific 2- 99.4 7.2E-13 1.6E-17 129.3 10.7 155 32-189 19-214 (346)
13 COG0037 MesJ tRNA(Ile)-lysidin 99.3 1.5E-11 3.3E-16 116.6 9.0 105 14-128 97-207 (298)
14 cd01998 tRNA_Me_trans tRNA met 99.1 2.6E-10 5.6E-15 111.5 8.3 149 31-179 17-209 (349)
15 PRK10696 tRNA 2-thiocytidine b 99.1 3.2E-10 6.9E-15 106.3 8.5 104 13-126 107-215 (258)
16 PRK10660 tilS tRNA(Ile)-lysidi 99.0 4.1E-10 9E-15 113.1 8.2 109 14-134 89-203 (436)
17 cd01990 Alpha_ANH_like_I This 99.0 2.1E-09 4.5E-14 96.7 10.5 115 40-165 28-155 (202)
18 cd01712 ThiI ThiI is required 98.9 2.5E-08 5.4E-13 88.0 12.5 77 81-160 81-160 (177)
19 cd01992 PP-ATPase N-terminal d 98.9 1E-08 2.2E-13 90.5 8.8 106 12-127 71-181 (185)
20 TIGR00268 conserved hypothetic 98.8 3.3E-08 7.1E-13 92.4 12.1 132 28-164 27-166 (252)
21 PRK00074 guaA GMP synthase; Re 98.8 9.2E-09 2E-13 105.4 8.8 132 37-171 240-397 (511)
22 TIGR02432 lysidine_TilS_N tRNA 98.8 1.3E-08 2.8E-13 90.4 8.6 103 15-127 77-185 (189)
23 cd01997 GMP_synthase_C The C-t 98.8 2.4E-08 5.2E-13 95.5 9.3 134 36-171 23-182 (295)
24 cd01993 Alpha_ANH_like_II This 98.8 1.2E-08 2.6E-13 89.7 6.5 97 12-115 81-183 (185)
25 PRK13820 argininosuccinate syn 98.8 6.6E-08 1.4E-12 95.8 12.0 123 34-166 24-172 (394)
26 PRK14665 mnmA tRNA-specific 2- 98.7 4.6E-08 9.9E-13 96.1 9.4 149 30-179 22-208 (360)
27 TIGR00420 trmU tRNA (5-methyla 98.7 5E-08 1.1E-12 95.6 7.7 131 31-161 18-189 (352)
28 PRK14561 hypothetical protein; 98.6 3.9E-07 8.5E-12 82.1 11.7 110 37-154 25-146 (194)
29 PRK14664 tRNA-specific 2-thiou 98.6 2.7E-07 5.9E-12 90.6 11.4 143 33-179 25-203 (362)
30 TIGR00342 thiazole biosynthesi 98.6 4.6E-07 1E-11 89.4 11.5 123 31-156 190-328 (371)
31 cd01713 PAPS_reductase This do 98.4 1.2E-06 2.5E-11 75.1 8.8 120 37-160 28-163 (173)
32 PRK01269 tRNA s(4)U8 sulfurtra 98.4 5.5E-07 1.2E-11 91.8 7.0 110 83-195 256-374 (482)
33 PRK08384 thiamine biosynthesis 98.4 5.9E-06 1.3E-10 81.8 13.4 120 33-158 200-340 (381)
34 cd01986 Alpha_ANH_like Adenine 98.3 2.2E-06 4.8E-11 69.0 7.9 36 90-125 48-83 (103)
35 TIGR00884 guaA_Cterm GMP synth 98.3 2.7E-06 5.7E-11 82.2 9.4 122 36-158 40-181 (311)
36 PRK00919 GMP synthase subunit 98.3 2.6E-06 5.6E-11 82.0 9.0 151 17-171 25-195 (307)
37 cd01995 ExsB ExsB is a transcr 98.2 1.3E-05 2.9E-10 69.9 9.8 113 32-161 18-143 (169)
38 TIGR00364 exsB protein. This p 98.1 2.1E-05 4.5E-10 70.9 10.4 127 32-160 17-180 (201)
39 KOG2594|consensus 98.1 1.8E-05 3.9E-10 76.3 8.9 132 86-219 179-330 (396)
40 PRK05253 sulfate adenylyltrans 98.0 3.8E-05 8.2E-10 73.8 9.2 122 37-160 57-207 (301)
41 PRK00509 argininosuccinate syn 97.9 0.00014 3.1E-09 72.4 12.3 82 82-166 88-175 (399)
42 TIGR00032 argG argininosuccina 97.9 0.00016 3.5E-09 71.9 12.2 134 29-168 15-173 (394)
43 PRK01565 thiamine biosynthesis 97.8 0.00013 2.8E-09 72.7 10.6 123 31-156 194-332 (394)
44 TIGR00552 nadE NAD+ synthetase 97.7 0.00017 3.8E-09 67.3 9.7 104 52-164 63-184 (250)
45 PF03054 tRNA_Me_trans: tRNA m 97.7 1.7E-05 3.7E-10 77.9 2.7 148 32-179 19-213 (356)
46 KOG2840|consensus 97.7 1E-05 2.2E-10 77.3 0.6 68 3-73 123-196 (347)
47 PRK08349 hypothetical protein; 97.7 0.00016 3.4E-09 65.1 7.7 77 14-104 82-158 (198)
48 cd01999 Argininosuccinate_Synt 97.5 0.00096 2.1E-08 66.3 12.2 84 82-168 85-174 (385)
49 COG1606 ATP-utilizing enzymes 97.4 0.00023 4.9E-09 66.3 5.7 77 81-166 91-177 (269)
50 cd01712 ThiI ThiI is required 97.3 0.00082 1.8E-08 59.1 7.9 79 13-105 79-157 (177)
51 TIGR02039 CysD sulfate adenyly 97.3 0.0019 4.2E-08 61.9 10.1 121 38-160 50-199 (294)
52 PRK00143 mnmA tRNA-specific 2- 97.2 0.0002 4.4E-09 70.1 3.3 101 15-125 93-207 (346)
53 COG0482 TrmU Predicted tRNA(5- 97.2 0.0017 3.7E-08 63.6 9.1 149 31-179 21-211 (356)
54 TIGR00268 conserved hypothetic 97.2 0.002 4.3E-08 60.2 9.3 129 14-160 84-243 (252)
55 PF09179 TilS: TilS substrate 97.1 0.00073 1.6E-08 50.1 4.2 59 233-295 4-69 (69)
56 PLN00200 argininosuccinate syn 97.1 0.0047 1E-07 61.7 10.8 78 86-166 96-179 (404)
57 PRK04527 argininosuccinate syn 96.9 0.011 2.3E-07 59.1 11.3 79 83-166 90-176 (400)
58 PRK08576 hypothetical protein; 96.7 0.0093 2E-07 60.2 10.0 105 52-160 273-389 (438)
59 PRK08384 thiamine biosynthesis 96.7 0.0052 1.1E-07 61.1 7.6 75 14-103 261-336 (381)
60 cd01984 AANH_like Adenine nucl 96.6 0.0015 3.2E-08 50.3 2.5 35 90-124 35-69 (86)
61 cd01997 GMP_synthase_C The C-t 96.6 0.0024 5.2E-08 61.3 4.5 85 15-105 77-165 (295)
62 cd01996 Alpha_ANH_like_III Thi 96.6 0.01 2.2E-07 50.7 7.8 74 41-116 32-115 (154)
63 cd01986 Alpha_ANH_like Adenine 96.4 0.0078 1.7E-07 48.2 5.7 45 16-63 40-84 (103)
64 PRK00074 guaA GMP synthase; Re 96.4 0.004 8.6E-08 64.2 4.7 83 15-105 293-380 (511)
65 PF02568 ThiI: Thiamine biosyn 96.3 0.018 4E-07 52.1 8.0 128 33-165 23-174 (197)
66 PRK13820 argininosuccinate syn 96.3 0.0084 1.8E-07 59.8 6.2 78 16-110 88-167 (394)
67 cd01990 Alpha_ANH_like_I This 96.2 0.0063 1.4E-07 54.5 4.4 80 15-110 73-152 (202)
68 cd01998 tRNA_Me_trans tRNA met 96.1 0.0024 5.1E-08 62.7 1.6 84 15-105 90-182 (349)
69 PRK02090 phosphoadenosine phos 95.9 0.053 1.1E-06 50.4 9.4 120 30-160 57-196 (241)
70 PRK14665 mnmA tRNA-specific 2- 95.9 0.0047 1E-07 60.9 2.5 34 15-48 90-124 (360)
71 PRK14561 hypothetical protein; 95.4 0.016 3.4E-07 52.2 3.9 98 15-129 74-174 (194)
72 PRK00919 GMP synthase subunit 95.3 0.037 8E-07 53.5 6.3 79 15-105 97-178 (307)
73 PRK14664 tRNA-specific 2-thiou 95.2 0.0042 9.2E-08 61.3 -0.5 36 14-49 84-120 (362)
74 TIGR00342 thiazole biosynthesi 95.2 0.022 4.8E-07 56.3 4.4 76 15-104 253-328 (371)
75 PF10288 DUF2392: Protein of u 95.1 0.099 2.1E-06 42.6 7.3 83 117-199 2-107 (107)
76 TIGR03573 WbuX N-acetyl sugar 95.1 0.086 1.9E-06 51.6 8.1 82 31-114 78-171 (343)
77 TIGR00420 trmU tRNA (5-methyla 95.0 0.0058 1.2E-07 60.1 -0.2 88 15-106 93-186 (352)
78 PRK12563 sulfate adenylyltrans 94.8 0.15 3.2E-06 49.4 8.7 121 37-159 67-216 (312)
79 cd00553 NAD_synthase NAD+ synt 94.7 0.074 1.6E-06 49.5 6.2 107 52-164 64-186 (248)
80 TIGR00884 guaA_Cterm GMP synth 94.5 0.071 1.5E-06 51.6 5.7 82 15-105 94-180 (311)
81 PLN02347 GMP synthetase 93.9 0.14 3.1E-06 53.1 7.0 137 17-157 233-404 (536)
82 PRK01565 thiamine biosynthesis 92.5 0.24 5.3E-06 49.4 5.9 74 17-104 259-332 (394)
83 PRK05370 argininosuccinate syn 92.0 2 4.4E-05 43.5 11.6 79 84-166 103-192 (447)
84 cd01713 PAPS_reductase This do 91.8 0.14 3.1E-06 43.3 2.9 80 14-106 82-161 (173)
85 cd01996 Alpha_ANH_like_III Thi 91.6 0.16 3.5E-06 43.2 3.0 35 14-48 79-113 (154)
86 PF00764 Arginosuc_synth: Argi 91.4 0.44 9.5E-06 47.5 6.2 78 84-165 86-169 (388)
87 PRK13980 NAD synthetase; Provi 91.4 1 2.2E-05 42.4 8.4 107 40-157 61-180 (265)
88 COG0301 ThiI Thiamine biosynth 91.3 1.6 3.5E-05 43.5 10.0 129 33-164 195-345 (383)
89 cd01984 AANH_like Adenine nucl 91.3 0.2 4.3E-06 38.3 2.9 35 24-61 35-69 (86)
90 PRK11106 queuosine biosynthesi 90.9 2.6 5.7E-05 39.1 10.6 76 82-158 93-180 (231)
91 KOG2805|consensus 90.4 0.2 4.4E-06 48.2 2.7 130 31-160 23-195 (377)
92 TIGR00552 nadE NAD+ synthetase 90.0 0.23 5.1E-06 46.2 2.8 33 16-48 107-139 (250)
93 COG1606 ATP-utilizing enzymes 88.4 0.82 1.8E-05 43.0 5.1 79 13-107 89-167 (269)
94 PRK00509 argininosuccinate syn 87.3 1.7 3.7E-05 43.6 7.0 79 15-106 87-166 (399)
95 cd01995 ExsB ExsB is a transcr 85.9 1.6 3.5E-05 37.7 5.3 74 25-107 64-141 (169)
96 TIGR00032 argG argininosuccina 84.9 3 6.6E-05 41.8 7.3 80 18-110 87-166 (394)
97 COG0137 ArgG Argininosuccinate 84.6 3.7 8.1E-05 40.8 7.6 81 85-168 94-179 (403)
98 PRK01269 tRNA s(4)U8 sulfurtra 84.0 1.1 2.4E-05 46.0 3.9 73 18-105 257-334 (482)
99 PRK05253 sulfate adenylyltrans 82.6 1.7 3.6E-05 42.0 4.2 92 15-107 105-206 (301)
100 TIGR00364 exsB protein. This p 82.4 2.3 5.1E-05 38.0 4.9 78 17-103 90-172 (201)
101 COG0482 TrmU Predicted tRNA(5- 81.0 1.2 2.5E-05 44.0 2.6 35 15-49 93-128 (356)
102 COG0519 GuaA GMP synthase, PP- 75.9 11 0.00024 36.2 7.3 63 92-159 110-186 (315)
103 KOG2594|consensus 71.2 17 0.00036 36.0 7.5 82 18-106 177-265 (396)
104 cd01994 Alpha_ANH_like_IV This 70.8 38 0.00082 30.4 9.4 122 31-163 17-145 (194)
105 cd01999 Argininosuccinate_Synt 68.2 13 0.00027 37.3 6.2 81 17-109 86-166 (385)
106 PF02677 DUF208: Uncharacteriz 67.8 19 0.00042 32.1 6.6 27 83-109 84-110 (176)
107 COG1365 Predicted ATPase (PP-l 67.7 98 0.0021 28.8 11.2 95 82-200 133-236 (255)
108 TIGR02057 PAPS_reductase phosp 67.7 51 0.0011 30.3 9.7 115 37-160 52-186 (226)
109 TIGR03573 WbuX N-acetyl sugar 67.2 4.9 0.00011 39.3 3.1 34 15-48 138-171 (343)
110 PF03054 tRNA_Me_trans: tRNA m 66.1 3.6 7.7E-05 40.7 1.8 34 15-48 92-127 (356)
111 PRK08557 hypothetical protein; 59.8 1.2E+02 0.0026 30.7 11.4 121 37-160 207-340 (417)
112 PLN00200 argininosuccinate syn 58.8 18 0.00039 36.4 5.4 79 16-107 87-171 (404)
113 PF06508 QueC: Queuosine biosy 56.0 37 0.0008 30.8 6.5 66 95-160 105-179 (209)
114 PF02568 ThiI: Thiamine biosyn 54.6 60 0.0013 29.4 7.5 37 13-49 84-120 (197)
115 PRK02628 nadE NAD synthetase; 52.9 17 0.00037 38.9 4.4 65 86-155 458-522 (679)
116 TIGR00434 cysH phosophoadenyly 47.1 2E+02 0.0043 25.7 9.8 128 29-159 29-170 (212)
117 cd00553 NAD_synthase NAD+ synt 47.1 20 0.00044 33.1 3.4 69 16-105 109-178 (248)
118 KOG0098|consensus 46.6 27 0.00058 31.8 3.9 41 141-181 128-171 (216)
119 PF10281 Ish1: Putative stress 42.3 45 0.00098 21.7 3.5 20 142-161 4-23 (38)
120 PF01507 PAPS_reduct: Phosphoa 40.3 24 0.00051 29.9 2.5 114 39-159 27-156 (174)
121 PRK04527 argininosuccinate syn 39.7 55 0.0012 33.0 5.3 78 17-108 90-170 (400)
122 PTZ00323 NAD+ synthase; Provis 38.9 83 0.0018 30.3 6.2 55 95-157 152-211 (294)
123 cd01994 Alpha_ANH_like_IV This 38.7 1.1E+02 0.0024 27.3 6.7 127 25-165 46-180 (194)
124 TIGR02039 CysD sulfate adenyly 36.0 50 0.0011 31.8 4.2 33 17-49 99-131 (294)
125 COG4586 ABC-type uncharacteriz 35.5 37 0.00081 32.8 3.2 31 87-117 191-221 (325)
126 PRK13795 hypothetical protein; 31.6 5.2E+02 0.011 27.6 11.4 120 38-160 270-402 (636)
127 PRK08576 hypothetical protein; 31.1 47 0.001 33.8 3.3 31 16-46 309-339 (438)
128 PF05047 L51_S25_CI-B8: Mitoch 28.5 54 0.0012 22.6 2.3 22 170-191 1-22 (52)
129 PF15396 FAM60A: Protein Famil 27.8 61 0.0013 29.7 3.1 46 210-258 37-82 (213)
130 TIGR03679 arCOG00187 arCOG0018 27.7 2E+02 0.0043 26.2 6.5 20 25-44 44-63 (218)
131 COG1636 Uncharacterized protei 27.0 1.8E+02 0.0039 26.4 5.8 88 18-109 12-116 (204)
132 TIGR03679 arCOG00187 arCOG0018 26.5 2.3E+02 0.005 25.7 6.8 68 92-163 76-143 (218)
133 PRK13980 NAD synthetase; Provi 26.2 70 0.0015 29.9 3.4 30 15-44 110-139 (265)
134 cd01991 Asn_Synthase_B_C The C 25.8 70 0.0015 29.3 3.3 36 82-117 95-130 (269)
135 TIGR02055 APS_reductase thiore 24.3 5E+02 0.011 22.9 10.2 121 29-160 8-150 (191)
136 PF11116 DUF2624: Protein of u 23.3 3.2E+02 0.0069 21.5 5.9 18 141-158 14-31 (85)
137 cd01987 USP_OKCHK USP domain i 22.5 1.2E+02 0.0025 24.0 3.6 35 92-130 74-108 (124)
138 PF02132 RecR: RecR protein; 22.0 60 0.0013 21.5 1.5 20 210-229 17-36 (41)
139 PF04800 ETC_C1_NDUFA4: ETC co 21.6 75 0.0016 25.7 2.2 24 141-164 55-78 (101)
No 1
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=100.00 E-value=5.2e-33 Score=277.81 Aligned_cols=266 Identities=14% Similarity=0.015 Sum_probs=200.6
Q ss_pred chHhhHHHHHHHHHHHHHH-HhcC--CCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhhhcCCCccchhhhhH
Q psy16535 15 KNNCTFCGVFRRQALDRGA-AMLG--VDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIITIGRKNNCTFCGVF 90 (333)
Q Consensus 15 ~~~~~~~~~~r~~~L~~~~-~~~g--~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~~~~~~~~~~cr~~ 90 (333)
.+..|.+... +|..+. ...| +.+++++|++++++|.++.|+.++|+ .++|+.+...++.. ...+.+++||..
T Consensus 24 GG~DS~~Ll~---~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~~~~~~-~~~~~e~~AR~~ 99 (436)
T PRK10660 24 GGLDSTVLLH---LLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQLDQ-RGLGIEAAARQA 99 (436)
T ss_pred CCHHHHHHHH---HHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEEEeccC-CCCCHHHHHHHH
Confidence 3455555433 444443 2234 44677899999888899999999999 88998776655431 234689999999
Q ss_pred HHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcc-ccccCC--------cccc---ccCHHHHHHHHHHcCCCc
Q psy16535 91 RRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIA-RLQRCT--------DIIT---YAYEKEIVMYAYYKKLVY 158 (333)
Q Consensus 91 Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~-~L~~~~--------~iiR---~i~k~EI~~y~~~~~l~~ 158 (333)
||.+|.+.+... ++|++|||+||++||||||++||+|. ||++|. .++| .++|+||..||+.+|++|
T Consensus 100 Ry~~~~~~~~~~--~~l~~aHh~DDq~ET~L~~L~rG~g~~gL~gm~~~~~~~~~~liRPLL~~~k~ei~~ya~~~~l~~ 177 (436)
T PRK10660 100 RYQAFARTLLPG--EVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSPFAGTRLIRPLLARSREELEQYAQAHGLRW 177 (436)
T ss_pred HHHHHHHHHHhC--CEEEEcCchHHHHHHHHHHHHcCCChhhccccceecccCCCcEeCCCccCCHHHHHHHHHHcCCCE
Confidence 999999999874 59999999999999999999999986 787763 3677 899999999999999999
Q ss_pred eecCCCCCCchhHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHhccCCCc-hhhhhhhcCcchhhhhhHHhhHHHHhc
Q psy16535 159 FSTECIFAPNAYRGHART-FLKHLEKIRPASIMDIIHSGEQMAIKEGVKLPN-REVCELCGFLSSQKICKACSLLEGLNK 236 (333)
Q Consensus 159 ~~D~~n~~~~~~Rn~iR~-~lp~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~ic~~c~l~~~~~~ 236 (333)
++|+||.++.|.||+||+ ++|.|++.||++..+++++++.++++++++++. ......+..... .+....+.
T Consensus 178 ~~D~sN~~~~~~RN~iR~~vlP~L~~~~p~~~~~l~r~a~~~~~~~~~l~~~~~~~~~~~~~~~~-------~l~~~~l~ 250 (436)
T PRK10660 178 IEDDSNQDDRYDRNFLRLRVLPLLQQRWPHFAEATARSAALCAEQEQLLDELLAEDLAHLQTPDG-------TLSIDPLL 250 (436)
T ss_pred EECCCCCCCccccHHHHHHhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------cCcHHHHh
Confidence 999999999999999998 999999999999999999999999887765432 222222221111 13334567
Q ss_pred cCCcccccHHHHHHHHHHhhcCCCCCCChHHHHHHHHHh-hC--CCCCeeecCC----cccceeeeec
Q psy16535 237 GLPKLSLSKRSVQDRIRQENYSKVQSITGYRDDSLETVK-QN--KEDYQMDLKI----LSYDELYGWT 297 (333)
Q Consensus 237 ~l~~~~~~~~r~i~~~l~~~~~~~~~~s~~hi~~i~~ll-~~--~~g~~i~Lp~----~~y~~l~~~~ 297 (333)
.+|++. |+++++.|+.... ....+..+++++...+ .. .++..+.+.+ +.|+.+++++
T Consensus 251 ~l~~~~--~~~ll~~~l~~~~--~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (436)
T PRK10660 251 AMSDAR--RAAILRRWLAGQG--APMPSRDQLQRIWQEVALAREDAEPCLRLGAFEIRRYQSQLWLIK 314 (436)
T ss_pred hCCHHH--HHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHhhccccCCeEEECCEEEEEECCEEEEee
Confidence 889988 9999999987642 2345667777766544 22 2233444442 5788898875
No 2
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=99.96 E-value=1.1e-28 Score=219.30 Aligned_cols=157 Identities=24% Similarity=0.217 Sum_probs=120.0
Q ss_pred HhhHHHHHHHHHHHHHHHhcCC--CEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhhhcCCCccchhhhhHHHH
Q psy16535 17 NCTFCGVFRRQALDRGAAMLGV--DCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIITIGRKNNCTFCGVFRRQ 93 (333)
Q Consensus 17 ~~~~~~~~r~~~L~~~~~~~g~--~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~ 93 (333)
..|.+.. .+|.++....+. .+++++|+.+.+++.++.++.++|. .++|+.....+.......++|..||.+||+
T Consensus 10 ~DS~~Ll---~~l~~~~~~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~ 86 (182)
T PF01171_consen 10 KDSMALL---HLLKELRRRNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDEDRKKGSNIEECARELRYQ 86 (182)
T ss_dssp HHHHHHH---HHHHHHHTTTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHhcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeeeecccCCHHHHHHHHHHH
Confidence 4444443 377777776554 4666789999878899999999999 889988777665333455689999999999
Q ss_pred HHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcc-ccccCC--------cccc---ccCHHHHHHHHHHcCCCceec
Q psy16535 94 ALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIA-RLQRCT--------DIIT---YAYEKEIVMYAYYKKLVYFST 161 (333)
Q Consensus 94 ~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~-~L~~~~--------~iiR---~i~k~EI~~y~~~~~l~~~~D 161 (333)
+|.++|.++|+++|++|||+||++||+|||++||++. +|.++. +++| .++|+||..||+++||||++|
T Consensus 87 ~l~~~a~~~g~~~i~~GHh~dD~~ET~l~~l~rg~~~~~l~~~~~~~~~~~~~~iRPLl~~~k~ei~~~~~~~~i~~~~D 166 (182)
T PF01171_consen 87 FLREIAKEEGCNKIALGHHLDDQAETFLMNLLRGSGLRGLAGMPPVSPFKGIKLIRPLLYVSKDEIRAYAKENGIPYVED 166 (182)
T ss_dssp HHHHHHHTTT-CEEE---BHHHHHHHHHHHHHHT--CCCCC-S-SEEEETTCEEE-GGGCS-HHHHHHHHHHTT-SSBS-
T ss_pred HHHHhhhcccccceeecCcCCccHHHHHHHHHHhccchhhccccccccccCcccCCcchhCCHHHHHHHHHHCCCcEEEC
Confidence 9999999999999999999999999999999999986 576643 4677 899999999999999999999
Q ss_pred CCCCCCchhHHHHHH
Q psy16535 162 ECIFAPNAYRGHART 176 (333)
Q Consensus 162 ~~n~~~~~~Rn~iR~ 176 (333)
+||+++.|.||+||+
T Consensus 167 ~tN~~~~~~Rn~iR~ 181 (182)
T PF01171_consen 167 PTNYDERYKRNRIRN 181 (182)
T ss_dssp CCGGCTTSHHHHHHH
T ss_pred cCCCCCcccHHHHhC
Confidence 999999999999996
No 3
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=5e-27 Score=222.55 Aligned_cols=198 Identities=31% Similarity=0.340 Sum_probs=158.2
Q ss_pred cCCCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhhhcC----CCccchhhhhHHHHHHHHHhHhccccEEEcc
Q psy16535 36 LGVDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIITIG----RKNNCTFCGVFRRQALDRGAAMLGVDCVATG 110 (333)
Q Consensus 36 ~g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~~~----~~~~~~~cr~~Rr~~l~~~a~~~g~~~ia~a 110 (333)
..+.+++++|+....++..+.++..+|. .++|............ +.++|+.||.+||.+|.+.|.+.|+++|+||
T Consensus 48 ~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tg 127 (298)
T COG0037 48 IEVEAVHVDHGLRGYSDQEAELVEKLCEKLGIPLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATG 127 (298)
T ss_pred ceEEEEEecCCCCCccchHHHHHHHHHHHhCCceEEEEEEeeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEec
Confidence 4566777899999878999999999999 7777655443322221 2469999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHhcCccc-cccC--------C-cccc---ccCHHHHHHHHHHcCCCceecCCCCCCchhHHHHHHH
Q psy16535 111 HNADDIAETVLMNVLRGDIAR-LQRC--------T-DIIT---YAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTF 177 (333)
Q Consensus 111 H~~dD~~ET~l~nl~rg~~~~-L~~~--------~-~iiR---~i~k~EI~~y~~~~~l~~~~D~~n~~~~~~Rn~iR~~ 177 (333)
||+||++||+|||++||++.. +++| + .++| .++++||..||..+++||.+|+||++..|.||++|+.
T Consensus 128 H~~dD~~et~lm~l~~g~~~~~l~~~~~~~~~~~~~~~iRPL~~~~~~ei~~~~~~~~l~~~~d~~n~~~~~~R~~~r~~ 207 (298)
T COG0037 128 HHLDDQAETFLMNLLRGSGLRGLRGMPPKRPFEGGLLIIRPLLYVREKEIELYAKEKGLPYIEDESNYDLRYTRNRIREE 207 (298)
T ss_pred cCcHHHHHHHHHHHHcCcHhhHHhhCCcccccCCCCeeeeecccCCHHHHHHHHHHcCCCEeecCCCCCchhhHHHHHHH
Confidence 999999999999999999742 4322 2 3667 8999999999999999999999999999999999996
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHhccCC----Cchhhhhhhc-CcchhhhhhHHhhHHH
Q psy16535 178 LKHLEKIRPASIMDIIHSGEQMAIKEGVKL----PNREVCELCG-FLSSQKICKACSLLEG 233 (333)
Q Consensus 178 lp~l~~~~p~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~g-~~~~~~ic~~c~l~~~ 233 (333)
+..+++..|++..++.+..+.......... .....|..|+ .+....+|..|.....
T Consensus 208 l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (298)
T COG0037 208 LLPLEEERPGLKFSLARAFELLRELRLLLEKLSDEKLLRCLACGAKPSLGKICAFCRKELA 268 (298)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhhhHHhhhhhhhHHHhhhhhccCCCChhhhhHHHHHHHH
Confidence 666666679999999887776655544322 1346777776 6667788888875433
No 4
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=99.93 E-value=2.2e-25 Score=208.66 Aligned_cols=182 Identities=24% Similarity=0.316 Sum_probs=141.7
Q ss_pred hHhhHHHHHHHHHHHHHHHhc--CCCEEE--eccCCCCCCcHHHHHHHHHHh-hchhcccccchhhhc------CCCccc
Q psy16535 16 NNCTFCGVFRRQALDRGAAML--GVDCVA--TGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIITI------GRKNNC 84 (333)
Q Consensus 16 ~~~~~~~~~r~~~L~~~~~~~--g~~~Ia--~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~~------~~~~~~ 84 (333)
+..|.+... +|..+.++. ++++++ ++|+.+ ..++.++.++|. .++|+.....+.... .+.++|
T Consensus 39 G~DS~~LL~---ll~~l~~~~~~~~~l~av~vd~g~~---~~~~~~~~~~~~~lgI~~~v~~~~~~~~~~~~~~~~~~~c 112 (258)
T PRK10696 39 GKDSYTLLD---ILLNLQKRAPINFELVAVNLDQKQP---GFPEHVLPEYLESLGVPYHIEEQDTYSIVKEKIPEGKTTC 112 (258)
T ss_pred CHHHHHHHH---HHHHHHHhCCCCeEEEEEEecCCCC---CCCHHHHHHHHHHhCCCEEEEEecchhhhhhhhccCCChh
Confidence 345554432 455555544 344554 557665 334457899999 889876544332111 234689
Q ss_pred hhhhhHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcc-ccccC-----C--cccc---ccCHHHHHHHHHH
Q psy16535 85 TFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIA-RLQRC-----T--DIIT---YAYEKEIVMYAYY 153 (333)
Q Consensus 85 ~~cr~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~-~L~~~-----~--~iiR---~i~k~EI~~y~~~ 153 (333)
++|+.+||.+|.++|++.|+++|++|||+||++||+|||++||++. ++... + .++| .++|+||..||++
T Consensus 113 ~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~Et~l~nl~rg~~l~~m~~~~~~~~~~i~iiRPLl~~~k~eI~~y~~~ 192 (258)
T PRK10696 113 SLCSRLRRGILYRTARELGATKIALGHHRDDILETLFLNMFYGGKLKAMPPKLLSDDGKHIVIRPLAYVAEKDIIKFAEA 192 (258)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHHHHHHHHHHhCCcccccCCeeecCCCceeEEecCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999763 44321 2 3677 8999999999999
Q ss_pred cCCCceecC-CCCCCchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHh
Q psy16535 154 KKLVYFSTE-CIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSGEQMAIKE 203 (333)
Q Consensus 154 ~~l~~~~D~-~n~~~~~~Rn~iR~~lp~l~~~~p~~~~~l~~~~~~~~~~~ 203 (333)
+|+||++++ ||+++.+.||++|++||.|++.+|++..++++++.++..+.
T Consensus 193 ~~lp~~~~~~~~~~~~~~R~~ir~~l~~L~~~~P~~~~~i~~~~~~~~~~~ 243 (258)
T PRK10696 193 KEFPIIPCNLCGSQENLQRQVVKEMLRDWEKEYPGRIETMFRALQNVVPSH 243 (258)
T ss_pred cCCCEeeCCCCCCCchhHHHHHHHHHHHHHHHCccHHHHHHHHHhhcchhc
Confidence 999998755 69999999999999999999999999999999998886653
No 5
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=99.86 E-value=6.1e-21 Score=169.74 Aligned_cols=152 Identities=24% Similarity=0.220 Sum_probs=120.9
Q ss_pred HHHHHHHhcCCC--EEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhhh---cCCCccchhhhhHHHHHHHHHhHh
Q psy16535 28 ALDRGAAMLGVD--CVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIIT---IGRKNNCTFCGVFRRQALDRGAAM 101 (333)
Q Consensus 28 ~L~~~~~~~g~~--~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~---~~~~~~~~~cr~~Rr~~l~~~a~~ 101 (333)
+|.++.+..|++ +|+++|+...+++.+...+..+|. .++|+.....+... ....++|..||.+||..+.++|++
T Consensus 18 ll~~~~~~~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~ 97 (189)
T TIGR02432 18 LLLKLQPKLKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKK 97 (189)
T ss_pred HHHHHHHHcCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 444454455554 555678776544567788999999 78887654433221 223468899999999999999999
Q ss_pred ccccEEEcccCCcchHHHHHHHHHhcCcc-ccccC---------Ccccc---ccCHHHHHHHHHHcCCCceecCCCCCCc
Q psy16535 102 LGVDCVATGHNADDIAETVLMNVLRGDIA-RLQRC---------TDIIT---YAYEKEIVMYAYYKKLVYFSTECIFAPN 168 (333)
Q Consensus 102 ~g~~~ia~aH~~dD~~ET~l~nl~rg~~~-~L~~~---------~~iiR---~i~k~EI~~y~~~~~l~~~~D~~n~~~~ 168 (333)
+|+++|++|||+||++||+++|++||++. ++.++ ..++| .++|+||.+||+.+|+||++|+||++..
T Consensus 98 ~g~~~i~~Gh~~~D~~e~~l~~~~~g~~~~~l~~~~~~~~~~~~~~iirPL~~~~k~ei~~~~~~~~lp~~~~~~~~~~~ 177 (189)
T TIGR02432 98 HGADYILTAHHADDQAETILLRLLRGSGLRGLSGMKPIRILGNGGQIIRPLLGISKSEIEEYLKENGLPWFEDETNQDDK 177 (189)
T ss_pred cCCCEEEEcCccHHHHHHHHHHHHcCCCcccccCCccccccCCCCEEECCCCCCCHHHHHHHHHHcCCCeeeCCCCCCCc
Confidence 99999999999999999999999999863 34443 12566 8999999999999999999999999999
Q ss_pred hhHHHHHH-HHH
Q psy16535 169 AYRGHART-FLK 179 (333)
Q Consensus 169 ~~Rn~iR~-~lp 179 (333)
|.||+||+ ++|
T Consensus 178 ~~R~~~r~~~~p 189 (189)
T TIGR02432 178 YLRNRIRHELLP 189 (189)
T ss_pred ccHHHHHHHhCC
Confidence 99999998 766
No 6
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=99.83 E-value=5.5e-20 Score=162.60 Aligned_cols=142 Identities=23% Similarity=0.196 Sum_probs=114.5
Q ss_pred CCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhhhcCCCccchhhhhHHHHHHHHHhHhccccEEEcccCCcch
Q psy16535 38 VDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIITIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDI 116 (333)
Q Consensus 38 ~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~l~~~a~~~g~~~ia~aH~~dD~ 116 (333)
+.+++++|+....+..+..++.++|. .+++..............++|..||.+||..|.++|+++|+++|++|||+||+
T Consensus 30 v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~ 109 (185)
T cd01992 30 LVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQ 109 (185)
T ss_pred EEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHH
Confidence 44555677766433477888999999 67776544212222233468899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcc-ccccC--------Ccccc---ccCHHHHHHHHHHcCCCceecCCCCCCchhHHHHHH-HHH
Q psy16535 117 AETVLMNVLRGDIA-RLQRC--------TDIIT---YAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHART-FLK 179 (333)
Q Consensus 117 ~ET~l~nl~rg~~~-~L~~~--------~~iiR---~i~k~EI~~y~~~~~l~~~~D~~n~~~~~~Rn~iR~-~lp 179 (333)
+||+++|++||.+. ++.++ ..++| .++|+||.+||+++|+|++.|+||++..+.||+||+ ++|
T Consensus 110 ~e~~l~~l~~g~~~~~l~~~~~~~~~~~~~virPl~~~~k~eI~~~~~~~~l~~~~~~~~~~~~~~r~~~r~~~~~ 185 (185)
T cd01992 110 AETVLMRLLRGSGLRGLAGMPARIPFGGGRLIRPLLGITRAEIEAYLRENGLPWWEDPSNEDPRYTRNRIRHELLP 185 (185)
T ss_pred HHHHHHHHHccCCcccccCCCcccCCCCCeEECCCCCCCHHHHHHHHHHcCCCeEECCCCCCCcccHHHHHHhhCC
Confidence 99999999999874 34432 23556 899999999999999999999999999999999998 765
No 7
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.77 E-value=3.1e-18 Score=150.93 Aligned_cols=129 Identities=36% Similarity=0.501 Sum_probs=102.1
Q ss_pred EEEeccCCCCCCcHHHHHHHHHHh-hchhcccccch-------h-hhcCCCccchhhhhHHHHHHHHHhHhccccEEEcc
Q psy16535 40 CVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTD-------I-ITIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATG 110 (333)
Q Consensus 40 ~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~-------v-~~~~~~~~~~~cr~~Rr~~l~~~a~~~g~~~ia~a 110 (333)
.++++|+....++.+..++.++|. .+++......+ . ......++|..|+..||..+.++|+++|+++|++|
T Consensus 34 ~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~G 113 (185)
T cd01993 34 ALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEEYTDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATG 113 (185)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhhcchhhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEc
Confidence 455677765445678889999999 77775443322 0 11123468999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHhcCcc-ccccC---------Ccccc---ccCHHHHHHHHHHcCCCceecCCCCCCc
Q psy16535 111 HNADDIAETVLMNVLRGDIA-RLQRC---------TDIIT---YAYEKEIVMYAYYKKLVYFSTECIFAPN 168 (333)
Q Consensus 111 H~~dD~~ET~l~nl~rg~~~-~L~~~---------~~iiR---~i~k~EI~~y~~~~~l~~~~D~~n~~~~ 168 (333)
||+||++||+++|+++|++. ++.++ ..++| .++|+||.+|++.+||||++|+||++..
T Consensus 114 h~~dD~~et~l~~~~~g~~~~~~~~~~~~~~~~~~~~iirPL~~~~k~eI~~~~~~~~l~~~~d~~~~~~~ 184 (185)
T cd01993 114 HNLDDEAETLLMNLLRGGILRLMRPGPILYLDEGDVTRIRPLVYVREKEIVLYAELNGLPFVEEECPYAGN 184 (185)
T ss_pred CChHHHHHHHHHHHHhcCHHHHcCCCCccccCCCCceEEeecccCCHHHHHHHHHHcCCCcccCCCCCCCC
Confidence 99999999999999999874 33322 13566 8999999999999999999999998653
No 8
>KOG2840|consensus
Probab=99.61 E-value=2.1e-15 Score=142.40 Aligned_cols=218 Identities=51% Similarity=0.758 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHh--cCCCEEE--eccCCCCC-CcHHHHHHHHHHhhchhc-cccc------ch---h-hhcC--CCccc
Q psy16535 23 VFRRQALDRGAAM--LGVDCVA--TGHNADDT-DDIAETVLMNVLRGDIAR-LQRC------TD---I-ITIG--RKNNC 84 (333)
Q Consensus 23 ~~r~~~L~~~~~~--~g~~~Ia--~~H~ld~~-~D~~Etfv~nl~rg~i~~-l~~~------~~---v-~~~~--~~~~~ 84 (333)
++--+.+..+-++ +|.+... +.|.++.= .|..+++-.|.-..++|. .+.. +. + .... .++-|
T Consensus 65 tvlA~v~~~Ln~r~~~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs~~dl~~~~tmd~i~~~i~~~~rn~c 144 (347)
T KOG2840|consen 65 TVLAYVLDALNERHDYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVSYKDLYGEWTMDEIVSEIGQEIRNNC 144 (347)
T ss_pred HHHHHHHHHhhhhcCCCceeeeeeccccccceeccHHHHHHHhhhhcCCceEEecHHHHhccchHHHHHHHHhhhhhcCc
Confidence 3444555566655 5665444 35766432 245555555555588883 1111 11 1 1123 56789
Q ss_pred hhhhhHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCccccccC----------Ccc-----ccccCHHHHHH
Q psy16535 85 TFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRC----------TDI-----ITYAYEKEIVM 149 (333)
Q Consensus 85 ~~cr~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~----------~~i-----iR~i~k~EI~~ 149 (333)
.+|..+|++++.+-+...|+..++||||+||.+||++||++||....+.+. +++ +++.++.||.-
T Consensus 145 tfCgv~RrqaL~~ga~~l~~~~~~tghnaDD~aetvl~n~lrgds~rl~R~~~~~t~~~e~~~~~r~kplk~~~~keivL 224 (347)
T KOG2840|consen 145 TFCGVFRRQALDRGADVLGAAELVTGHNADDWAETVLMNLLRGDSARLERLTEITTPSLEMGIIPRLKPLKYASEKEIVL 224 (347)
T ss_pred eeecHHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHHHhHHHHhhhccccccCccccCccccccccccchhhehhh
Confidence 999999999999999999999999999999999999999999987655431 222 23789999999
Q ss_pred HHHHcCCCceecCCCCCCchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhccCCCchhhhhhhcCcchhh-hhhHH
Q psy16535 150 YAYYKKLVYFSTECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSGEQMAIKEGVKLPNREVCELCGFLSSQK-ICKAC 228 (333)
Q Consensus 150 y~~~~~l~~~~D~~n~~~~~~Rn~iR~~lp~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-ic~~c 228 (333)
|+....+.|+.-+|++.++..|...|.+|..++...|++.-.+.+..+.+...+......+..|.+|+..++.. .|..|
T Consensus 225 ya~~~~L~yFs~eCv~ap~a~rg~~r~~lk~le~~~P~~lmd~~rs~e~~~~~~~~~~p~~g~C~~C~~iss~~r~ckac 304 (347)
T KOG2840|consen 225 YASLSKLRYFSTECVKAPGASRGDARILLKDLERERPRILMDYCRSGEFLEFKDIAGAPTPGTCSRCGFISSQKRPCKAC 304 (347)
T ss_pred HHHHHHHHHHHHhhccCCcchHHHHHHHhhhhhhhCchHHHHHHhhhHHHhhhHhhcCCCCcchhhhHHHhcchhhHHHH
Confidence 99999999999999999999999999999999998899999999988766555444445678999999988866 89999
Q ss_pred hhHHHHhccCCc
Q psy16535 229 SLLEGLNKGLPK 240 (333)
Q Consensus 229 ~l~~~~~~~l~~ 240 (333)
.+.+.+.+..|.
T Consensus 305 allegln~~~~~ 316 (347)
T KOG2840|consen 305 ALLEGLNKGAPG 316 (347)
T ss_pred HHHHhHhccCcc
Confidence 887766555443
No 9
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=99.55 E-value=1.5e-14 Score=117.79 Aligned_cols=92 Identities=33% Similarity=0.578 Sum_probs=81.7
Q ss_pred ccCHHHHHHHHHHcCCCceecCCCCCCchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcc--CCCchhhhhhhcC
Q psy16535 141 YAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSGEQMAIKEGV--KLPNREVCELCGF 218 (333)
Q Consensus 141 ~i~k~EI~~y~~~~~l~~~~D~~n~~~~~~Rn~iR~~lp~l~~~~p~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~g~ 218 (333)
.++++||..||..+|||+..++||++.+..|..+|++|..|++.+|+++.+|+++..++...-.. .......|+.||+
T Consensus 9 ~v~E~ei~~ya~~~~lp~~~~~CP~~~~a~R~~~k~~L~~LE~~~P~~k~~i~~s~~~~~~~~~~~~~~~~~~~C~~CG~ 88 (104)
T TIGR00269 9 YIPEKEVVLYAFLNELKVHLDECPYSSLSVRARIRDFLYDLENKKPGVKFSVLRGFEKLIPLLKELSEQEDLRRCERCGE 88 (104)
T ss_pred cCCHHHHHHHHHHcCCCcCCCCCCCCCCCchHHHHHHHHHHHHHCcChHHHHHHHHHHHHHHhhcccccccCCcCCcCcC
Confidence 89999999999999999999999999999999999999999999999999999999887754221 1124678999999
Q ss_pred cchhhhhhHHhhHH
Q psy16535 219 LSSQKICKACSLLE 232 (333)
Q Consensus 219 ~~~~~ic~~c~l~~ 232 (333)
|+++++|++|.+..
T Consensus 89 pss~~iC~~C~l~~ 102 (104)
T TIGR00269 89 PTSGRICKACKFLE 102 (104)
T ss_pred cCCccccHhhhhhh
Confidence 99999999998753
No 10
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=99.45 E-value=7.6e-14 Score=123.91 Aligned_cols=105 Identities=27% Similarity=0.266 Sum_probs=80.1
Q ss_pred CCchHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhh-chhcccccchhhhcCC----Cccchhh
Q psy16535 13 GRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRG-DIARLQRCTDIITIGR----KNNCTFC 87 (333)
Q Consensus 13 ~~~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg-~i~~l~~~~~v~~~~~----~~~~~~c 87 (333)
...+.|..||.+||++|.+++.++|+++|++|||+| |++|||+||+++| ++.++.++..+....+ ||...
T Consensus 72 ~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~d---D~~ET~l~~l~rg~~~~~l~~~~~~~~~~~~~~iRPLl~-- 146 (182)
T PF01171_consen 72 KGSNIEECARELRYQFLREIAKEEGCNKIALGHHLD---DQAETFLMNLLRGSGLRGLAGMPPVSPFKGIKLIRPLLY-- 146 (182)
T ss_dssp TTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHH---HHHHHHHHHHHHT--CCCCC-S-SEEEETTCEEE-GGGC--
T ss_pred ccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCC---ccHHHHHHHHHHhccchhhccccccccccCcccCCcchh--
Confidence 457789999999999999999999999999999999 9999999999995 4566777665543322 44332
Q ss_pred hhHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhc
Q psy16535 88 GVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRG 127 (333)
Q Consensus 88 r~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg 127 (333)
++.+.+.++|++.|++++.+..|.|+ ++.+|.+|.
T Consensus 147 --~~k~ei~~~~~~~~i~~~~D~tN~~~---~~~Rn~iR~ 181 (182)
T PF01171_consen 147 --VSKDEIRAYAKENGIPYVEDPTNYDE---RYKRNRIRN 181 (182)
T ss_dssp --S-HHHHHHHHHHTT-SSBS-CCGGCT---TSHHHHHHH
T ss_pred --CCHHHHHHHHHHCCCcEEECcCCCCC---cccHHHHhC
Confidence 57899999999999999999999999 588999985
No 11
>PRK08349 hypothetical protein; Validated
Probab=99.43 E-value=1.8e-12 Score=116.78 Aligned_cols=103 Identities=22% Similarity=0.274 Sum_probs=87.8
Q ss_pred CccchhhhhHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcCCC
Q psy16535 81 KNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKKLV 157 (333)
Q Consensus 81 ~~~~~~cr~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~l~ 157 (333)
+++|..||.+++..+.++|.++|+++|++|||+||.++|.++|+.+++..+ ..+++| .++|+||.+|+.+.|++
T Consensus 83 ~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~a~~~l~nl~~~~~~~---~i~i~rPL~~~~K~eI~~~a~~~g~~ 159 (198)
T PRK08349 83 KWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQVASQTLDNLMVISTAT---DLPVLRPLIGLDKEEIVKIAKEIGTF 159 (198)
T ss_pred CCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHHhcccccc---CCeEEcCCCCCCHHHHHHHHHHcCCh
Confidence 569999999999999999999999999999999999999999999975321 123555 79999999999999976
Q ss_pred ce----ecCCCC-----CCchhHHHHHHHHHHHHHHCC
Q psy16535 158 YF----STECIF-----APNAYRGHARTFLKHLEKIRP 186 (333)
Q Consensus 158 ~~----~D~~n~-----~~~~~Rn~iR~~lp~l~~~~p 186 (333)
.. ...||+ .....+..++++++.+++..|
T Consensus 160 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (198)
T PRK08349 160 EISIEPEPPCPFVPKYPVVRASLGEFEKILEEVYVLGP 197 (198)
T ss_pred hhhhCCCCCCcCCCCCCcCCCCHHHHHHHHHHHhccCC
Confidence 54 557987 456788999999999988776
No 12
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=99.42 E-value=7.2e-13 Score=129.30 Aligned_cols=155 Identities=20% Similarity=0.146 Sum_probs=111.0
Q ss_pred HHHhcCCCEEEe--ccCCCC--------CCcHHHHHHHHHHh-hchhcccccch-----------hhhc---CCCccchh
Q psy16535 32 GAAMLGVDCVAT--GHNADD--------TDDIAETVLMNVLR-GDIARLQRCTD-----------IITI---GRKNNCTF 86 (333)
Q Consensus 32 ~~~~~g~~~Ia~--~H~ld~--------~~D~~Etfv~nl~r-g~i~~l~~~~~-----------v~~~---~~~~~~~~ 86 (333)
++.+.|++++++ +|..++ .++.+...+..+|. -++|....... +... ...+||..
T Consensus 19 lL~~~G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f~~~vi~~~~~~~~~g~tpnpc~~ 98 (346)
T PRK00143 19 LLKEQGYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDFEKEFWDRVIDYFLDEYKAGRTPNPCVL 98 (346)
T ss_pred HHHHcCCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHHHHHcCCCCCcChh
Confidence 344567776664 343221 14577889999999 77886543211 1111 12469999
Q ss_pred hhh-HHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcc-c-----cccC-----Ccccc---ccCHHHHHHHH
Q psy16535 87 CGV-FRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIA-R-----LQRC-----TDIIT---YAYEKEIVMYA 151 (333)
Q Consensus 87 cr~-~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~-~-----L~~~-----~~iiR---~i~k~EI~~y~ 151 (333)
|+. +||.+|.++|+++|+++||||||+||+++| +++||++. + |.++ ..+++ .++|+||.+||
T Consensus 99 C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~~~---~L~rg~d~~kDqsy~l~~l~~~~l~~~i~PL~~~~K~eVr~~A 175 (346)
T PRK00143 99 CNKEIKFKAFLEYARELGADYIATGHYARIRDGR---ELLRGVDPNKDQSYFLYQLTQEQLAKLLFPLGELTKPEVREIA 175 (346)
T ss_pred hhHHHHHHHHHHHHHHCCCCEEEeeeeccccccc---eEEEccCCCcChhhhhccCCHHHhcceeccCccCCHHHHHHHH
Confidence 997 789999999999999999999999999988 89999653 2 3332 23455 89999999999
Q ss_pred HHcCCCceecCCCCCCchhH-HHHHHHHHHHHHHCCCHH
Q psy16535 152 YYKKLVYFSTECIFAPNAYR-GHARTFLKHLEKIRPASI 189 (333)
Q Consensus 152 ~~~~l~~~~D~~n~~~~~~R-n~iR~~lp~l~~~~p~~~ 189 (333)
+++|||+...+|+++--+.. +.++.+|..+....||..
T Consensus 176 ~~~gl~~~~k~~s~~icf~~~~~~~~fl~~~~~~~pG~~ 214 (346)
T PRK00143 176 EEAGLPVAKKKDSQGICFIGERDYRDFLKRYLPAQPGEI 214 (346)
T ss_pred HHcCCCcCCCCCCCcccCCCchhHHHHHHHhcccCCCCE
Confidence 99999999999998655544 356666665555567753
No 13
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=1.5e-11 Score=116.62 Aligned_cols=105 Identities=30% Similarity=0.317 Sum_probs=83.6
Q ss_pred CchHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhch----hcccccchhhhc--CCCccchhh
Q psy16535 14 RKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDI----ARLQRCTDIITI--GRKNNCTFC 87 (333)
Q Consensus 14 ~~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i----~~l~~~~~v~~~--~~~~~~~~c 87 (333)
++++|+.||.+||.+|.+.+++.|+++|++|||+| |++||++||+.+|+. .++.+..+.... ..+|...
T Consensus 97 ~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~d---D~~et~lm~l~~g~~~~~l~~~~~~~~~~~~~~~iRPL~~-- 171 (298)
T COG0037 97 GKSICAACRRLRRGLLYKIAKELGADKIATGHHLD---DQAETFLMNLLRGSGLRGLRGMPPKRPFEGGLLIIRPLLY-- 171 (298)
T ss_pred CCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcH---HHHHHHHHHHHcCcHhhHHhhCCcccccCCCCeeeeeccc--
Confidence 35799999999999999999999999999999999 999999999999663 233333332222 1233332
Q ss_pred hhHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcC
Q psy16535 88 GVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGD 128 (333)
Q Consensus 88 r~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~ 128 (333)
+++..+..+|..+|+.|+.+.+|.++. +.+|.+|..
T Consensus 172 --~~~~ei~~~~~~~~l~~~~d~~n~~~~---~~R~~~r~~ 207 (298)
T COG0037 172 --VREKEIELYAKEKGLPYIEDESNYDLR---YTRNRIREE 207 (298)
T ss_pred --CCHHHHHHHHHHcCCCEeecCCCCCch---hhHHHHHHH
Confidence 678999999999999999999997774 557777763
No 14
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=99.08 E-value=2.6e-10 Score=111.49 Aligned_cols=149 Identities=18% Similarity=0.156 Sum_probs=103.6
Q ss_pred HHHHhcCCCEEEe--ccCCC------CCCcHHHHHHHHHHh-hchhcccccch-----------hhhc---CCCccchhh
Q psy16535 31 RGAAMLGVDCVAT--GHNAD------DTDDIAETVLMNVLR-GDIARLQRCTD-----------IITI---GRKNNCTFC 87 (333)
Q Consensus 31 ~~~~~~g~~~Ia~--~H~ld------~~~D~~Etfv~nl~r-g~i~~l~~~~~-----------v~~~---~~~~~~~~c 87 (333)
.++.+.|.+++++ .|... ..++.+...+.++|. -++|....... +... ...+||..|
T Consensus 17 ~lL~~~g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~~f~~~v~~~~i~~~~~g~tpnpc~~C 96 (349)
T cd01998 17 ALLKEQGYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEKEYWEKVFEPFLEEYKKGRTPNPDILC 96 (349)
T ss_pred HHHHHcCCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHHHHHHHcCCCCCchHhh
Confidence 3445567776664 33221 124578889999999 77876542211 1111 124699999
Q ss_pred hh-HHHHHHHHHhHhccccEEEcccCCcchHHH-HHHHHHhcCcc-c-----cccC-----Ccccc---ccCHHHHHHHH
Q psy16535 88 GV-FRRQALDRGAAMLGVDCVATGHNADDIAET-VLMNVLRGDIA-R-----LQRC-----TDIIT---YAYEKEIVMYA 151 (333)
Q Consensus 88 r~-~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET-~l~nl~rg~~~-~-----L~~~-----~~iiR---~i~k~EI~~y~ 151 (333)
+. +||..|.++|++.|+++||||||++|+.++ ..++++||... + |.++ ..+++ .++|+||++||
T Consensus 97 ~r~ikf~~l~~~A~~~g~~~IatGHya~d~~~~~~~~~l~rg~d~~kdqsy~L~~~~~~~l~~ii~PL~~~~K~eVr~~A 176 (349)
T cd01998 97 NKEIKFGALLDYAKKLGADYIATGHYARIEEDNNGRYRLLRGVDPNKDQSYFLSQLSQEQLSRLIFPLGDLTKPEVREIA 176 (349)
T ss_pred hhHHHHHHHHHHHHHcCcCEEEECCcCCeeecCCCceEEeecCCCCCCcceEeccCCHHHHhheeecCCCCCHHHHHHHH
Confidence 97 699999999999999999999999999998 88889999653 2 3333 23444 89999999999
Q ss_pred HHcCCCceecC-----CCCCCchhHHHHHHHHH
Q psy16535 152 YYKKLVYFSTE-----CIFAPNAYRGHARTFLK 179 (333)
Q Consensus 152 ~~~~l~~~~D~-----~n~~~~~~Rn~iR~~lp 179 (333)
+++|||....+ |...+...++++.+.++
T Consensus 177 ~~~gl~~~~k~~s~~iCFi~~~~~~~fl~~~~~ 209 (349)
T cd01998 177 KELGLPVAKKKDSQGICFIGERNFRDFLKEYLP 209 (349)
T ss_pred HHcCCCCCCCCCCCceEEecCCCHHHHHHHhcC
Confidence 99999977643 44434445666655443
No 15
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=99.08 E-value=3.2e-10 Score=106.30 Aligned_cols=104 Identities=21% Similarity=0.293 Sum_probs=78.7
Q ss_pred CCchHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhhhc---CCCccchhhh
Q psy16535 13 GRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIITI---GRKNNCTFCG 88 (333)
Q Consensus 13 ~~~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~~---~~~~~~~~cr 88 (333)
.+.+.|+.|+.+||.+|.+++++.|+++|++|||+| |++|||+||+++ +++.++.+....... -.+|...
T Consensus 107 ~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~d---D~~Et~l~nl~rg~~l~~m~~~~~~~~~~i~iiRPLl~--- 180 (258)
T PRK10696 107 EGKTTCSLCSRLRRGILYRTARELGATKIALGHHRD---DILETLFLNMFYGGKLKAMPPKLLSDDGKHIVIRPLAY--- 180 (258)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchH---HHHHHHHHHHHhCCcccccCCeeecCCCceeEEecCcc---
Confidence 346799999999999999999999999999999999 999999999999 545555443211111 1234332
Q ss_pred hHHHHHHHHHhHhccccEEEcc-cCCcchHHHHHHHHHh
Q psy16535 89 VFRRQALDRGAAMLGVDCVATG-HNADDIAETVLMNVLR 126 (333)
Q Consensus 89 ~~Rr~~l~~~a~~~g~~~ia~a-H~~dD~~ET~l~nl~r 126 (333)
+.+..+.++++++|+.++... ++.++ .+.+|.+|
T Consensus 181 -~~k~eI~~y~~~~~lp~~~~~~~~~~~---~~~R~~ir 215 (258)
T PRK10696 181 -VAEKDIIKFAEAKEFPIIPCNLCGSQE---NLQRQVVK 215 (258)
T ss_pred -CCHHHHHHHHHHcCCCEeeCCCCCCCc---hhHHHHHH
Confidence 568999999999999998544 45544 45667666
No 16
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=99.05 E-value=4.1e-10 Score=113.15 Aligned_cols=109 Identities=24% Similarity=0.222 Sum_probs=89.3
Q ss_pred CchHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhh-chhcccccchhhhcC----CCccchhhh
Q psy16535 14 RKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRG-DIARLQRCTDIITIG----RKNNCTFCG 88 (333)
Q Consensus 14 ~~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg-~i~~l~~~~~v~~~~----~~~~~~~cr 88 (333)
+.+.+++||..||.++...+... ++|++|||+| |++|||+|+++|| ++.++.++.++.... .+|...
T Consensus 89 ~~~~e~~AR~~Ry~~~~~~~~~~--~~l~~aHh~D---Dq~ET~L~~L~rG~g~~gL~gm~~~~~~~~~~liRPLL~--- 160 (436)
T PRK10660 89 GLGIEAAARQARYQAFARTLLPG--EVLVTAQHLD---DQCETFLLALKRGSGPAGLSAMAEVSPFAGTRLIRPLLA--- 160 (436)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhC--CEEEEcCchH---HHHHHHHHHHHcCCChhhccccceecccCCCcEeCCCcc---
Confidence 46789999999999999999874 5999999999 9999999999995 477787776543322 244332
Q ss_pred hHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcc-cccc
Q psy16535 89 VFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIA-RLQR 134 (333)
Q Consensus 89 ~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~-~L~~ 134 (333)
+.++.+.+||+++|+.|+.+.+|.|+ .+.+|.+|.... .|..
T Consensus 161 -~~k~ei~~ya~~~~l~~~~D~sN~~~---~~~RN~iR~~vlP~L~~ 203 (436)
T PRK10660 161 -RSREELEQYAQAHGLRWIEDDSNQDD---RYDRNFLRLRVLPLLQQ 203 (436)
T ss_pred -CCHHHHHHHHHHcCCCEEECCCCCCC---ccccHHHHHHhhHHHHH
Confidence 57899999999999999999999999 589999998654 3543
No 17
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.01 E-value=2.1e-09 Score=96.71 Aligned_cols=115 Identities=20% Similarity=0.124 Sum_probs=84.4
Q ss_pred EEEeccCCCCCCcHHHHHHHHHHh-hchhcccccch---hhhc--CCCccchhhhhHHHHHHHHHhHhccccEEEcccCC
Q psy16535 40 CVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTD---IITI--GRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNA 113 (333)
Q Consensus 40 ~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~---v~~~--~~~~~~~~cr~~Rr~~l~~~a~~~g~~~ia~aH~~ 113 (333)
.++++|+.. ++.+..++..+|. .+++......+ .... ....+|..|+.+|+..+.++|+++|+++|++|||.
T Consensus 28 ~v~vd~g~~--~~~~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~ 105 (202)
T cd01990 28 AVTATSPLF--PRRELEEAKRLAKEIGIRHEVIETDELDDPEFAKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNA 105 (202)
T ss_pred EEEeCCCCC--CHHHHHHHHHHHHHcCCcEEEEeCCccccHHHhcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 444556554 3678889999999 77776543322 1111 12357889999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCcccccc--CCcccc-----ccCHHHHHHHHHHcCCCceecCCCC
Q psy16535 114 DDIAETVLMNVLRGDIARLQR--CTDIIT-----YAYEKEIVMYAYYKKLVYFSTECIF 165 (333)
Q Consensus 114 dD~~ET~l~nl~rg~~~~L~~--~~~iiR-----~i~k~EI~~y~~~~~l~~~~D~~n~ 165 (333)
||++|+. .++.. ...++| .++|+||.+||+++|+||++|++|.
T Consensus 106 dD~~e~~---------~~~~~~~~~~iirPL~~~~~~K~ei~~~a~~~gl~~~~~~~~~ 155 (202)
T cd01990 106 DDLGDYR---------PGLKALRELGVRSPLAEAGLGKAEIRELARELGLPTWDKPAMA 155 (202)
T ss_pred ccCcccC---------hHHHHHHHcCCcCchhhcCCCHHHHHHHHHHcCCCCcCCCCcc
Confidence 9998842 11111 023444 4899999999999999999998874
No 18
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=98.89 E-value=2.5e-08 Score=87.99 Aligned_cols=77 Identities=23% Similarity=0.239 Sum_probs=66.1
Q ss_pred CccchhhhhHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcCCC
Q psy16535 81 KNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKKLV 157 (333)
Q Consensus 81 ~~~~~~cr~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~l~ 157 (333)
.++|..|+.+++..+.++|++.|+++|++|||.||.+++.++++..... .....++| .++|+||.+|+.++|++
T Consensus 81 ~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D~~~~~~~~l~~~~~---~~~~~i~rPl~~~~K~eI~~~a~~~gl~ 157 (177)
T cd01712 81 KYRCILCKRMMYRIAEKLAEELGADAIVTGESLGQVASQTLENLLVISS---GTDLPILRPLIGFDKEEIIGIARRIGTY 157 (177)
T ss_pred ccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCcccchHHHHHhhhhccc---CCCCeEECCCCCCCHHHHHHHHHHcCCc
Confidence 4699999999999999999999999999999999999999999987531 11133555 89999999999999999
Q ss_pred cee
Q psy16535 158 YFS 160 (333)
Q Consensus 158 ~~~ 160 (333)
.+.
T Consensus 158 ~~~ 160 (177)
T cd01712 158 DIS 160 (177)
T ss_pred cee
Confidence 654
No 19
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=98.86 E-value=1e-08 Score=90.53 Aligned_cols=106 Identities=26% Similarity=0.220 Sum_probs=84.8
Q ss_pred cCCchHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhh-chhcccccchhhhcC----CCccchh
Q psy16535 12 IGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRG-DIARLQRCTDIITIG----RKNNCTF 86 (333)
Q Consensus 12 ~~~~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg-~i~~l~~~~~v~~~~----~~~~~~~ 86 (333)
....++|..|+.+||..|.++++++|+++|++|||.| |.+|++++++++| +..++.+........ .+|..
T Consensus 71 ~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~d---D~~e~~l~~l~~g~~~~~l~~~~~~~~~~~~~virPl~-- 145 (185)
T cd01992 71 KPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHAD---DQAETVLMRLLRGSGLRGLAGMPARIPFGGGRLIRPLL-- 145 (185)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcH---HHHHHHHHHHHccCCcccccCCCcccCCCCCeEECCCC--
Confidence 3446799999999999999999999999999999999 8999999999994 455554432222111 13322
Q ss_pred hhhHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhc
Q psy16535 87 CGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRG 127 (333)
Q Consensus 87 cr~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg 127 (333)
.+.+..+.++|+++|+.++.+..+.++ .+.+|.+|.
T Consensus 146 --~~~k~eI~~~~~~~~l~~~~~~~~~~~---~~~r~~~r~ 181 (185)
T cd01992 146 --GITRAEIEAYLRENGLPWWEDPSNEDP---RYTRNRIRH 181 (185)
T ss_pred --CCCHHHHHHHHHHcCCCeEECCCCCCC---cccHHHHHH
Confidence 367889999999999999999999998 588888886
No 20
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=98.84 E-value=3.3e-08 Score=92.45 Aligned_cols=132 Identities=17% Similarity=0.126 Sum_probs=86.9
Q ss_pred HHHHHHHhcCCCEEEec--cCCCCCCcHHHHHHHHHHh-hchhcccccchh-hh-c--CCCccchhhhhHHHHHHHHHhH
Q psy16535 28 ALDRGAAMLGVDCVATG--HNADDTDDIAETVLMNVLR-GDIARLQRCTDI-IT-I--GRKNNCTFCGVFRRQALDRGAA 100 (333)
Q Consensus 28 ~L~~~~~~~g~~~Ia~~--H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v-~~-~--~~~~~~~~cr~~Rr~~l~~~a~ 100 (333)
++..++.+.|.+++++. |... ++.+...+..+|+ -+++......+. .. . .....|..|+..++..+.++|+
T Consensus 27 ~ll~la~~~g~~v~av~~~~~~~--~~~e~~~a~~~a~~lgi~~~ii~~~~~~~~~~~n~~~~c~~ck~~~~~~l~~~A~ 104 (252)
T TIGR00268 27 LLAAVCSDAGTEVLAITVVSPSI--SPRELEDAIIIAKEIGVNHEFVKIDKMINPFRANVEERCYFCKKMVLSILVKEAE 104 (252)
T ss_pred HHHHHHHHhCCCEEEEEecCCCC--CHHHHHHHHHHHHHcCCCEEEEEcHHHHHHHHhCCCcccchhhHHHHHHHHHHHH
Confidence 34445555577776653 3222 2456678888998 667654332221 11 1 2245899999999999999999
Q ss_pred hccccEEEcccCCcchHHHHHHHHHhcCccccccCCcccc-ccCHHHHHHHHHHcCCCceecCCC
Q psy16535 101 MLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT-YAYEKEIVMYAYYKKLVYFSTECI 164 (333)
Q Consensus 101 ~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR-~i~k~EI~~y~~~~~l~~~~D~~n 164 (333)
++|+++|++|||+||++++-. -+++. .++....|+.- .++|+||.+|+++.|+|++.++++
T Consensus 105 ~~g~~~I~~G~n~dD~~~~rp--g~~a~-~~~~~~~PL~~~~l~K~eIr~la~~~gl~~~~~ps~ 166 (252)
T TIGR00268 105 KRGYDVVVDGTNADDLFDHRP--GYRAV-KEFNGVSPWAEFGITKKEIREIAKSLGISFPDKPSE 166 (252)
T ss_pred HcCCCEEEECCCCcccccccH--HHHHH-HHcCCCCcchhcCCCHHHHHHHHHHcCCCccCCCCC
Confidence 999999999999999887421 00100 01111123332 589999999999999999977765
No 21
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.83 E-value=9.2e-09 Score=105.38 Aligned_cols=132 Identities=15% Similarity=0.094 Sum_probs=89.3
Q ss_pred CCCE--EEeccCCCCCCcHHHHHHHHHHh-hchhcccccchh---hhc-CCC---ccchhhhhHHHHHHHHHhHhc-ccc
Q psy16535 37 GVDC--VATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDI---ITI-GRK---NNCTFCGVFRRQALDRGAAML-GVD 105 (333)
Q Consensus 37 g~~~--Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v---~~~-~~~---~~~~~cr~~Rr~~l~~~a~~~-g~~ 105 (333)
|.++ |+++|++.. .++.+.+...+|+ .+++......+. ... +.. .-|.+|....|..|.++|+++ |++
T Consensus 240 g~~v~av~vd~g~~~-~~e~~~~~~~~a~~lgi~~~vvd~~~~f~~~l~g~~~~~~~r~~~~~~~~~~~~~~a~~~~g~~ 318 (511)
T PRK00074 240 GDQLTCVFVDHGLLR-KNEAEQVMEMFREHFGLNLIHVDASDRFLSALAGVTDPEEKRKIIGREFIEVFEEEAKKLGGVK 318 (511)
T ss_pred CCceEEEEEeCCCCC-HHHHHHHHHHHHHHcCCcEEEEccHHHHHHhccCCCCcHHhhhhhhHHHHHHHHHHHHHccCCC
Confidence 5444 445787632 1456677777877 777765433221 111 111 145567777799999999999 999
Q ss_pred EEEcccCCcchHHHHHHHHHhcCcc----ccccC-----Ccccc---ccCHHHHHHHHHHcCCCc---eecCCCCCCchh
Q psy16535 106 CVATGHNADDIAETVLMNVLRGDIA----RLQRC-----TDIIT---YAYEKEIVMYAYYKKLVY---FSTECIFAPNAY 170 (333)
Q Consensus 106 ~ia~aH~~dD~~ET~l~nl~rg~~~----~L~~~-----~~iiR---~i~k~EI~~y~~~~~l~~---~~D~~n~~~~~~ 170 (333)
+|++|||+||++||.++| ++++. ++.++ ..+++ .++|+||++||+++|||+ +.-|||..--..
T Consensus 319 ~latGhn~dD~~Et~~~~--~~~~ik~~~~l~Gl~~~~~~~ii~PL~~l~K~EIr~~a~~~gLp~~~~~~~p~p~~~la~ 396 (511)
T PRK00074 319 FLAQGTLYPDVIESGGTK--KAATIKSHHNVGGLPEDMKLKLVEPLRELFKDEVRKLGLELGLPEEIVYRHPFPGPGLAI 396 (511)
T ss_pred EEEECCCcchhhhhcCCC--CccccccccCccCcChhHhcccccchhhcCHHHHHHHHHHcCCCHHHhCCCCCCCCceee
Confidence 999999999999999887 54432 12222 23555 899999999999999994 445777655444
Q ss_pred H
Q psy16535 171 R 171 (333)
Q Consensus 171 R 171 (333)
|
T Consensus 397 R 397 (511)
T PRK00074 397 R 397 (511)
T ss_pred E
Confidence 4
No 22
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=98.83 E-value=1.3e-08 Score=90.45 Aligned_cols=103 Identities=27% Similarity=0.307 Sum_probs=83.3
Q ss_pred chHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhc-hhcccccchhhhcC-----CCccchhhh
Q psy16535 15 KNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGD-IARLQRCTDIITIG-----RKNNCTFCG 88 (333)
Q Consensus 15 ~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~-i~~l~~~~~v~~~~-----~~~~~~~cr 88 (333)
.+.|..|+..|+..|.++++++|+++|++|||.+ |.+||+++++++|. +.++.++.++.... .+ |. .
T Consensus 77 ~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~---D~~e~~l~~~~~g~~~~~l~~~~~~~~~~~~~~iir-PL---~ 149 (189)
T TIGR02432 77 KNLEEAAREARYDFFEEIAKKHGADYILTAHHAD---DQAETILLRLLRGSGLRGLSGMKPIRILGNGGQIIR-PL---L 149 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccH---HHHHHHHHHHHcCCCcccccCCccccccCCCCEEEC-CC---C
Confidence 5689999999999999999999999999999999 89999999999954 33344443332221 12 22 2
Q ss_pred hHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhc
Q psy16535 89 VFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRG 127 (333)
Q Consensus 89 ~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg 127 (333)
.++...+.++|+++|+.++.+..+.+. ++.+|.+|.
T Consensus 150 ~~~k~ei~~~~~~~~lp~~~~~~~~~~---~~~R~~~r~ 185 (189)
T TIGR02432 150 GISKSEIEEYLKENGLPWFEDETNQDD---KYLRNRIRH 185 (189)
T ss_pred CCCHHHHHHHHHHcCCCeeeCCCCCCC---cccHHHHHH
Confidence 367899999999999999999988887 688999886
No 23
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.78 E-value=2.4e-08 Score=95.54 Aligned_cols=134 Identities=13% Similarity=0.025 Sum_probs=87.5
Q ss_pred cCCCE--EEeccCCCCCCcHHHHHHHHHHh--hchhcccccchh---hhcC-CCc---cchhhhhHHHHHHHHHhHhcc-
Q psy16535 36 LGVDC--VATGHNADDTDDIAETVLMNVLR--GDIARLQRCTDI---ITIG-RKN---NCTFCGVFRRQALDRGAAMLG- 103 (333)
Q Consensus 36 ~g~~~--Ia~~H~ld~~~D~~Etfv~nl~r--g~i~~l~~~~~v---~~~~-~~~---~~~~cr~~Rr~~l~~~a~~~g- 103 (333)
.|.++ |+++|++.. ..+...+.++|. |.++......+. .... ..+ -|..|+..++..|.++|++.|
T Consensus 23 lG~~v~aV~vd~g~~~--~~E~~~~~~~~~~~g~i~~~vvd~~e~fl~~l~~v~npe~rr~~~g~~~~~~l~~~A~~~g~ 100 (295)
T cd01997 23 IGDRLTCVFVDNGLLR--KNEAERVEELFSKLLGINLIVVDASERFLSALKGVTDPEEKRKIIGETFIEVFEEEAKKLGL 100 (295)
T ss_pred hCCcEEEEEecCCCCC--hHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHhcCCCCHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 45554 445777642 345667888886 434654332221 1111 112 355677899999999999999
Q ss_pred ccEEEcccCCcchHHHHHHHHHhcCc------ccccc--CCcccc---ccCHHHHHHHHHHcCCCc---eecCCCCCCch
Q psy16535 104 VDCVATGHNADDIAETVLMNVLRGDI------ARLQR--CTDIIT---YAYEKEIVMYAYYKKLVY---FSTECIFAPNA 169 (333)
Q Consensus 104 ~~~ia~aH~~dD~~ET~l~nl~rg~~------~~L~~--~~~iiR---~i~k~EI~~y~~~~~l~~---~~D~~n~~~~~ 169 (333)
+++|++|||+||++||..++...++. .|+.. ...+++ +++|+||++|+++.|+|+ +.-|||..--.
T Consensus 101 ~~~Ia~Gh~~dD~~Es~~~~~~~~~IKs~~n~~Gl~a~~~~~vi~PL~~l~K~EVR~lar~lGLp~~~~~~~Pfp~p~La 180 (295)
T cd01997 101 AEYLAQGTLYPDVIESGSGKGSADTIKSHHNVGGLPEDMKLKLIEPLRDLFKDEVRELGRELGLPEEIVERHPFPGPGLA 180 (295)
T ss_pred CCEEEECCcccchhhhcccccccccccccccccccchHhhCCcccccccCcHHHHHHHHHHcCCCchhhCCCCCCCCcce
Confidence 99999999999999998876531111 12221 123444 899999999999999997 55666654333
Q ss_pred hH
Q psy16535 170 YR 171 (333)
Q Consensus 170 ~R 171 (333)
.|
T Consensus 181 ~R 182 (295)
T cd01997 181 VR 182 (295)
T ss_pred eE
Confidence 33
No 24
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.77 E-value=1.2e-08 Score=89.71 Aligned_cols=97 Identities=34% Similarity=0.445 Sum_probs=77.1
Q ss_pred cCCchHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccc--hhhhcC---CCccch
Q psy16535 12 IGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCT--DIITIG---RKNNCT 85 (333)
Q Consensus 12 ~~~~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~--~v~~~~---~~~~~~ 85 (333)
....+.|..|++.|+.+|.++++++|+++|++|||+| |.+||+++++++ +++.++.+.. ...... .+|..
T Consensus 81 ~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~d---D~~et~l~~~~~g~~~~~~~~~~~~~~~~~~~~iirPL~- 156 (185)
T cd01993 81 RGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLD---DEAETLLMNLLRGGILRLMRPGPILYLDEGDVTRIRPLV- 156 (185)
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChH---HHHHHHHHHHHhcCHHHHcCCCCccccCCCCceEEeecc-
Confidence 3446789999999999999999999999999999999 999999999999 4455555544 111111 13333
Q ss_pred hhhhHHHHHHHHHhHhccccEEEcccCCcc
Q psy16535 86 FCGVFRRQALDRGAAMLGVDCVATGHNADD 115 (333)
Q Consensus 86 ~cr~~Rr~~l~~~a~~~g~~~ia~aH~~dD 115 (333)
.+.+..+.++++++|+.++.+..+.++
T Consensus 157 ---~~~k~eI~~~~~~~~l~~~~d~~~~~~ 183 (185)
T cd01993 157 ---YVREKEIVLYAELNGLPFVEEECPYAG 183 (185)
T ss_pred ---cCCHHHHHHHHHHcCCCcccCCCCCCC
Confidence 267899999999999999999888765
No 25
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.76 E-value=6.6e-08 Score=95.80 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=83.9
Q ss_pred HhcCC-CEEEe--ccCCCCCCcHHHHHHHHHHh-hchhcccccc--hhh---------hc---CC-CccchhhhhHHHHH
Q psy16535 34 AMLGV-DCVAT--GHNADDTDDIAETVLMNVLR-GDIARLQRCT--DII---------TI---GR-KNNCTFCGVFRRQA 94 (333)
Q Consensus 34 ~~~g~-~~Ia~--~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~--~v~---------~~---~~-~~~~~~cr~~Rr~~ 94 (333)
+.+|+ +++++ +|+.+ +.+...+..+|. -+++...... ... .. .. ..+|++||.+++..
T Consensus 24 e~~g~~~Viav~vd~g~~---~~e~~~a~~~a~~lGi~~~vvd~~eef~~~~i~~~i~~n~~~~gYpl~~~~cR~~i~~~ 100 (394)
T PRK13820 24 EKYGYDEVITVTVDVGQP---EEEIKEAEEKAKKLGDKHYTIDAKEEFAKDYIFPAIKANALYEGYPLGTALARPLIAEK 100 (394)
T ss_pred HhcCCCEEEEEEEECCCC---hHHHHHHHHHHHHcCCCEEEEeCHHHHHHHHHHHHHHhCccccCCcCcHHHHHHHHHHH
Confidence 44576 66654 67654 345556888888 6667544221 111 00 11 24678999999999
Q ss_pred HHHHhHhccccEEEcccCC--cchH--HHHHHHHHhcCccccccCCcccc--ccCHHHHHHHHHHcCCCceecC-CCCC
Q psy16535 95 LDRGAAMLGVDCVATGHNA--DDIA--ETVLMNVLRGDIARLQRCTDIIT--YAYEKEIVMYAYYKKLVYFSTE-CIFA 166 (333)
Q Consensus 95 l~~~a~~~g~~~ia~aH~~--dD~~--ET~l~nl~rg~~~~L~~~~~iiR--~i~k~EI~~y~~~~~l~~~~D~-~n~~ 166 (333)
|.++|++.|+++||+|||. |||+ |+. +++. +|..+. ++| .++|+||++||+++|||+..+. .||+
T Consensus 101 l~e~A~e~G~~~IA~G~t~~gnDq~rfe~~----~~a~--~l~via-P~re~~ltK~ei~~ya~~~gip~~~~~~~~yS 172 (394)
T PRK13820 101 IVEVAEKEGASAIAHGCTGKGNDQLRFEAV----FRAS--DLEVIA-PIRELNLTREWEIEYAKEKGIPVPVGKEKPWS 172 (394)
T ss_pred HHHHHHHcCCCEEEECCCCCcchHHHHHHh----hHhh--cCeeeC-chhccCCCHHHHHHHHHHcCCCCCcCCCCCcc
Confidence 9999999999999999955 5998 776 4443 233232 445 6899999999999999997543 3454
No 26
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.72 E-value=4.6e-08 Score=96.08 Aligned_cols=149 Identities=15% Similarity=0.118 Sum_probs=98.9
Q ss_pred HHHHHhcCCCEEEec--cCCCCCCcHHHHHHHHHHh-hchhcccccc------hhh-----hc--C-CCccchhhhh-HH
Q psy16535 30 DRGAAMLGVDCVATG--HNADDTDDIAETVLMNVLR-GDIARLQRCT------DII-----TI--G-RKNNCTFCGV-FR 91 (333)
Q Consensus 30 ~~~~~~~g~~~Ia~~--H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~------~v~-----~~--~-~~~~~~~cr~-~R 91 (333)
..++++.|++++++. +....++..+...+.++|+ -++|.+.... .+. .. + ..+||..|+. +|
T Consensus 22 a~LL~~~G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~~f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ik 101 (360)
T PRK14665 22 AMLLLEAGYEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARKVFRKQIIDYFIDEYMSGHTPVPCTLCNNYLK 101 (360)
T ss_pred HHHHHHcCCeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHHHHHHHHHhhhhhHHhccCCCCHHHHHHHHHH
Confidence 344556688877753 2112123456778899999 7787654322 111 11 1 2469999997 78
Q ss_pred HHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcc-c-----cccC-----Ccccc---ccCHHHHHHHHHHcCCC
Q psy16535 92 RQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIA-R-----LQRC-----TDIIT---YAYEKEIVMYAYYKKLV 157 (333)
Q Consensus 92 r~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~-~-----L~~~-----~~iiR---~i~k~EI~~y~~~~~l~ 157 (333)
+..|.++|+++|+++|+||||+.++.++-..++.||... + |..+ ..+++ .++|+||+++|++.|++
T Consensus 102 f~~l~~~A~~~G~~~IATGHya~~~~~~~~~~l~~g~D~~kDQSyfL~~l~~~~l~~~ifPLg~~~K~eVr~~A~~~gl~ 181 (360)
T PRK14665 102 WPLLAKIADEMGIFYLATGHYVRKQWIDGNYYITPAEDVDKDQSFFLWGLRQEILQRMLLPMGGMTKSEARAYAAERGFE 181 (360)
T ss_pred HHHHHHHHHHcCCCEEEECCccceeccCCcEEEEeecCCCCCceEEecCCCHHHHhheeccCcCCCHHHHHHHHHHCCCC
Confidence 999999999999999999999988655544456666442 1 2222 12344 89999999999999985
Q ss_pred c-ee-----cCCCCCCchhHHHHHHHHH
Q psy16535 158 Y-FS-----TECIFAPNAYRGHARTFLK 179 (333)
Q Consensus 158 ~-~~-----D~~n~~~~~~Rn~iR~~lp 179 (333)
. .+ |.|... ...|+++++.++
T Consensus 182 ~~a~k~eSq~iCF~~-~~~~~fl~~~~~ 208 (360)
T PRK14665 182 KVAKKRDSLGVCFCP-MDYRSFLKKCLC 208 (360)
T ss_pred ccCcCCCCCccccCC-chHHHHHHHhcc
Confidence 3 32 566664 457777776554
No 27
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.66 E-value=5e-08 Score=95.60 Aligned_cols=131 Identities=19% Similarity=0.107 Sum_probs=83.8
Q ss_pred HHHHhcCCCEEEec--cCCCC--------CCcHHHHHHHHHHh-hchhcccccc------h-----hhhc---CCCccch
Q psy16535 31 RGAAMLGVDCVATG--HNADD--------TDDIAETVLMNVLR-GDIARLQRCT------D-----IITI---GRKNNCT 85 (333)
Q Consensus 31 ~~~~~~g~~~Ia~~--H~ld~--------~~D~~Etfv~nl~r-g~i~~l~~~~------~-----v~~~---~~~~~~~ 85 (333)
.++.+.|.+++++. |..++ .++.+...+..+|+ -++|...... . +... ...+||.
T Consensus 18 ~lL~~~G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~~~~f~~~v~~~~~~~y~~g~tpnpC~ 97 (352)
T TIGR00420 18 YLLKQQGYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNFQKEYWNKVFEPFIQEYKEGRTPNPDI 97 (352)
T ss_pred HHHHHcCCeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 44455677777753 22111 12456778889999 7788654321 0 1111 1246999
Q ss_pred hhhh-HHHHHHHHHhHhc-cccEEEcccCC---cchHHHHHHHHHhcCccc---cccC-----Ccccc---ccCHHHHHH
Q psy16535 86 FCGV-FRRQALDRGAAML-GVDCVATGHNA---DDIAETVLMNVLRGDIAR---LQRC-----TDIIT---YAYEKEIVM 149 (333)
Q Consensus 86 ~cr~-~Rr~~l~~~a~~~-g~~~ia~aH~~---dD~~ET~l~nl~rg~~~~---L~~~-----~~iiR---~i~k~EI~~ 149 (333)
.|+. +|+..|.++|++. |+++||||||+ ||...+.+++-..++..+ |.++ ..+++ .++|+||.+
T Consensus 98 ~Cnr~iKf~~l~~~a~~~~G~~~IATGHya~~~~d~~~~~l~~~~d~~kDqsy~L~~l~~~~l~~~i~PL~~~~K~EVr~ 177 (352)
T TIGR00420 98 LCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIEGKSLLLRALDKNKDQSYFLYHLSHEQLAKLLFPLGELLKPEVRQ 177 (352)
T ss_pred hhhHHHHHHHHHHHHHHHcCCCEEEECCcceEeCCCCcEEEEEccCCCcCcceecccCCHHHhhhhcccCCCCCHHHHHH
Confidence 9986 5689999999996 99999999999 444333333333322221 2322 12444 899999999
Q ss_pred HHHHcCCCceec
Q psy16535 150 YAYYKKLVYFST 161 (333)
Q Consensus 150 y~~~~~l~~~~D 161 (333)
||+++|+++.+.
T Consensus 178 ~A~~~gl~~~~k 189 (352)
T TIGR00420 178 IAKNAGLPTAEK 189 (352)
T ss_pred HHHHcCCCCCCC
Confidence 999999998774
No 28
>PRK14561 hypothetical protein; Provisional
Probab=98.62 E-value=3.9e-07 Score=82.08 Aligned_cols=110 Identities=14% Similarity=-0.042 Sum_probs=77.5
Q ss_pred CCCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhh--------hcCCCccchhhhhHHHHHHHHHhHhccccEE
Q psy16535 37 GVDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDII--------TIGRKNNCTFCGVFRRQALDRGAAMLGVDCV 107 (333)
Q Consensus 37 g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~--------~~~~~~~~~~cr~~Rr~~l~~~a~~~g~~~i 107 (333)
.+..+.++++.. .+..++..+|. -++|......+.. ......||..|..+++.++..++ .|+++|
T Consensus 25 ~v~a~t~~~g~~----~e~~~a~~~a~~lGi~~~~v~~~~~~~~~~~~~~~~~~~P~~~~~~l~~~~l~~~a--~g~~~I 98 (194)
T PRK14561 25 DVELVTVNFGVL----DSWKHAREAAKALGFPHRVLELDREILEKAVDMIIEDGYPNNAIQYVHEHALEALA--EEYDVI 98 (194)
T ss_pred CeEEEEEecCch----hHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHH--cCCCEE
Confidence 333444556554 24668888888 7777544322211 01223478888889999999988 899999
Q ss_pred EcccCCcchHHHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHc
Q psy16535 108 ATGHNADDIAETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYK 154 (333)
Q Consensus 108 a~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~ 154 (333)
++|||.||.+||++|+.+++-. ...++ .++| .++|+||.+|++..
T Consensus 99 a~G~n~DD~~et~~r~~~~a~~-~~~gi-~iirPL~~~~K~eI~~la~~l 146 (194)
T PRK14561 99 ADGTRRDDRVPKLSRSEIQSLE-DRKGV-QYIRPLLGFGRKTIDRLVERL 146 (194)
T ss_pred EEEecCCCcchhccHHHHhhhh-cCCCc-EEEeeCCCCCHHHHHHHHHhh
Confidence 9999999999999999999631 12221 2445 99999999999876
No 29
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.62 E-value=2.7e-07 Score=90.62 Aligned_cols=143 Identities=19% Similarity=0.172 Sum_probs=93.0
Q ss_pred HHhcCCCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccch------h-----hhc--C-CCccchhhh-hHHHHHHH
Q psy16535 33 AAMLGVDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTD------I-----ITI--G-RKNNCTFCG-VFRRQALD 96 (333)
Q Consensus 33 ~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~------v-----~~~--~-~~~~~~~cr-~~Rr~~l~ 96 (333)
.++.|.+++++..... +.+..-+..+|. -++|....... + ... + ..+||..|+ .+|+..|.
T Consensus 25 L~~~G~eV~av~~~~~---~~e~~~a~~va~~LGI~~~vvd~~~~f~~~v~~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~ 101 (362)
T PRK14664 25 LQEQGYEIVGVTMRVW---GDEPQDARELAARMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLI 101 (362)
T ss_pred HHHcCCcEEEEEecCc---chhHHHHHHHHHHhCCCEEEEeChHHHHHHHHHHhHHHHHcCCCCCCchhhhHHHHHHHHH
Confidence 3456888888765443 222335788888 67776442211 1 111 1 246999999 56999999
Q ss_pred HHhHhccccEEEcccCCcchHHHHHHHHHhcCcc-c-----cccC--------CccccccCHHHHHHHHHHcCCCc-ee-
Q psy16535 97 RGAAMLGVDCVATGHNADDIAETVLMNVLRGDIA-R-----LQRC--------TDIITYAYEKEIVMYAYYKKLVY-FS- 160 (333)
Q Consensus 97 ~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~-~-----L~~~--------~~iiR~i~k~EI~~y~~~~~l~~-~~- 160 (333)
++|++.|+++||||||+++....-.++++||... + |... ..++..++|+|+.+||+++||+. ..
T Consensus 102 ~~A~~~G~~~IATGHyar~~~~~~~~~l~~g~D~~kDQsyfl~~l~~~~l~~~ifPLg~~~K~evr~~A~~~gl~~~a~k 181 (362)
T PRK14664 102 EWADKLGCAWIATGHYSRLEERNGHIYIVAGDDDKKDQSYFLWRLGQDILRRCIFPLGNYTKQTVREYLREKGYEAKSKE 181 (362)
T ss_pred HHHHHcCCCEEEECCccccccCCCeEEEEEcCCCcchHHHHHHhcCHHHHhHHhccCccCCHHHHHHHHHHcCCCCCCCC
Confidence 9999999999999999976433334567777642 1 2221 12233899999999999999987 33
Q ss_pred ----cCCCCCCchhHHHHHHHHH
Q psy16535 161 ----TECIFAPNAYRGHARTFLK 179 (333)
Q Consensus 161 ----D~~n~~~~~~Rn~iR~~lp 179 (333)
|-|.-. ...+.++.+-+|
T Consensus 182 ~dSq~iCFi~-~~~~~fl~~~~~ 203 (362)
T PRK14664 182 GESMEVCFIK-GDYRDFLREQCP 203 (362)
T ss_pred CCCCcceeec-CcHHHHHHHhcc
Confidence 555542 345555554333
No 30
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.57 E-value=4.6e-07 Score=89.42 Aligned_cols=123 Identities=20% Similarity=0.142 Sum_probs=84.1
Q ss_pred HHHHhcCCCEEEeccCCCC-CCcHHHHHHHHHHh-hch-----hccc-ccc----hhhhc-CCCccchhhhhHHHHHHHH
Q psy16535 31 RGAAMLGVDCVATGHNADD-TDDIAETVLMNVLR-GDI-----ARLQ-RCT----DIITI-GRKNNCTFCGVFRRQALDR 97 (333)
Q Consensus 31 ~~~~~~g~~~Ia~~H~ld~-~~D~~Etfv~nl~r-g~i-----~~l~-~~~----~v~~~-~~~~~~~~cr~~Rr~~l~~ 97 (333)
.++.+.|++++++.-+..+ .++.+...+.++++ -+. +.+. ... .+... .....|..||.+.|.++.+
T Consensus 190 ~ll~krG~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~l~~v~~~~~~~~i~~~~~~~~~cv~cRr~m~~~a~~ 269 (371)
T TIGR00342 190 FMMMKRGCRVVAVHFFNEPAASEKAREKVERLANSLNETGGSVKLYVFDFTDVQEEIIHIIPEGYTCVLCRRMMYKAASK 269 (371)
T ss_pred HHHHHcCCeEEEEEEeCCCCccHHHHHHHHHHHHHHhhcCCCceEEEEeCHHHHHHHHhcCCCCceeHhHHHHHHHHHHH
Confidence 3344568888776533332 34577788888888 321 2111 111 11111 1234789999999999999
Q ss_pred HhHhccccEEEcccCCcchHHHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcCC
Q psy16535 98 GAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKKL 156 (333)
Q Consensus 98 ~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~l 156 (333)
+|++.|+++|+||||++|.+++.++|+.--. . ....+++| .++|+||.+++++.|.
T Consensus 270 ~A~~~g~~~I~tG~~l~d~asqtl~nl~~i~-~--~~~~~I~rPLi~~~K~EIi~~a~~iG~ 328 (371)
T TIGR00342 270 VAEKEGCLAIVTGESLGQVASQTLENLRVIQ-A--VSNTPILRPLIGMDKEEIIELAKEIGT 328 (371)
T ss_pred HHHHcCCCEEEEccChHhhhccHHHHHHHHh-c--cCCCCEEeCCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999863211 0 11134556 8999999999999985
No 31
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=98.42 E-value=1.2e-06 Score=75.14 Aligned_cols=120 Identities=15% Similarity=0.075 Sum_probs=85.1
Q ss_pred CCCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhhh------------cCCCccchhhhhHHHHHHHHHhHhcc
Q psy16535 37 GVDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIIT------------IGRKNNCTFCGVFRRQALDRGAAMLG 103 (333)
Q Consensus 37 g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~------------~~~~~~~~~cr~~Rr~~l~~~a~~~g 103 (333)
.+.++.++++.. .....+++.+++. .+++...-..+... ....+.+..|+.+|+..+.+++++.|
T Consensus 28 ~~~~v~~dtg~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~K~~~~~~~~~~~~ 105 (173)
T cd01713 28 PVPVIFLDTGYE--FPETYEFVDRVAERYGLPLVVVRPPDSPAEGLALGLKGFPLPSPDRRWCCRILKVEPLRRALKELG 105 (173)
T ss_pred CceEEEeCCCCC--CHHHHHHHHHHHHHhCCCeEEECCCccHHHHHHHhhhccCCccccHHHhhccccchHHHHHHHhcC
Confidence 355666777664 3677889999999 77665332221110 01234666688899999999999999
Q ss_pred ccEEEcccCCcchHHHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcCCCcee
Q psy16535 104 VDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKKLVYFS 160 (333)
Q Consensus 104 ~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~l~~~~ 160 (333)
.+.+++||++||..++.+++...+.. ...+ ...++ .++++||.+|+..+|+|+..
T Consensus 106 ~~~~~~G~r~de~~~r~~~~~~~~~~-~~~~-~~~~~Pl~~w~~~di~~~~~~~~l~~~~ 163 (173)
T cd01713 106 VVAWITGIRRDESARRALLPVVWTDD-GKGG-ILKVNPLLDWTYEDVWAYLARHGLPYNP 163 (173)
T ss_pred CeEEEEEeccccchhhhhCccccccC-CCCC-cEEEcchhcCCHHHHHHHHHHcCCCCCH
Confidence 99999999999999999998872211 1111 11223 78999999999999998743
No 32
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.39 E-value=5.5e-07 Score=91.77 Aligned_cols=110 Identities=16% Similarity=0.133 Sum_probs=82.6
Q ss_pred cchhhh-hHHHHHH---HHHhHhccccEEEcccCCcchHHHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcC
Q psy16535 83 NCTFCG-VFRRQAL---DRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKK 155 (333)
Q Consensus 83 ~~~~cr-~~Rr~~l---~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~ 155 (333)
+|..|. ..||-++ ..+|++.|++.|+||||++|.+.+.++|+.+.+.. ...++.| .++|+||..||+..|
T Consensus 256 ~~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dvasqtl~nl~~~~~~---~~~~v~rPLi~~dK~EIi~~a~~ig 332 (482)
T PRK01269 256 DDGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQVSSQTLTNLRLIDNV---TDTLILRPLIAMDKEDIIDLAREIG 332 (482)
T ss_pred CCceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhhhhHHHHHHHhhhhh---cCCceecCCcCCCHHHHHHHHHHhC
Confidence 455444 5677777 89999999999999999999999999998775321 1123445 799999999999999
Q ss_pred CCceecCCCC--CCchhHHHHHHHHHHHHHHCCCHHHHHHHH
Q psy16535 156 LVYFSTECIF--APNAYRGHARTFLKHLEKIRPASIMDIIHS 195 (333)
Q Consensus 156 l~~~~D~~n~--~~~~~Rn~iR~~lp~l~~~~p~~~~~l~~~ 195 (333)
++....+||+ .....|..+|..+..+++..|++..++++.
T Consensus 333 ~~~~s~~~p~~C~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 374 (482)
T PRK01269 333 TEDFAKTMPEYCGVISKKPTVKAVKEKIEAEEKKFDFAILDR 374 (482)
T ss_pred ChhhcccCCCCceeeCCCCcCCCCHHHHHHHhhcCCHHHHHH
Confidence 8655677775 223356677777788888888887665443
No 33
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=98.36 E-value=5.9e-06 Score=81.82 Aligned_cols=120 Identities=18% Similarity=0.155 Sum_probs=82.2
Q ss_pred HHhcCCCEEEeccCCCCCCcHHHHHHHHHHh-hc-------hhcccccc----hhhhc-----CCCccchhhhhHHHHHH
Q psy16535 33 AAMLGVDCVATGHNADDTDDIAETVLMNVLR-GD-------IARLQRCT----DIITI-----GRKNNCTFCGVFRRQAL 95 (333)
Q Consensus 33 ~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~-------i~~l~~~~----~v~~~-----~~~~~~~~cr~~Rr~~l 95 (333)
..+.|+.+++++-+.. +.+..-+..++. -+ ++.+.... ++... ....+|.+|+..+|..+
T Consensus 200 l~krG~~V~~v~f~~g---~~~~e~v~~la~~L~~~~~~~~i~l~~v~~~~~~~v~~~i~~~~~~~~~C~~Ckr~m~r~a 276 (381)
T PRK08384 200 MMKRGVEVIPVHIYMG---EKTLEKVRKIWNQLKKYHYGGKAELIVVKPQERERIIQKLKELKKENYTCVFCKFMMVKHA 276 (381)
T ss_pred HHHcCCeEEEEEEEeC---HHHHHHHHHHHHHhcccccCCcceEEEEChHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 3345998887643333 344555556665 22 22222111 12111 22358999999999999
Q ss_pred HHHhHhccccEEEcccCCcchHHHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcC-CCc
Q psy16535 96 DRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKK-LVY 158 (333)
Q Consensus 96 ~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~-l~~ 158 (333)
.++|+++|+++|+||||++|.+++.++|+..-... ...+++| .++|+||.+||++.| ++.
T Consensus 277 ~~iA~~~g~~~IaTGhslgqvaSQtl~Nl~~i~~~---~~lpilRPLi~~dK~EIi~~Ar~iGT~~~ 340 (381)
T PRK08384 277 DRIAKEFGAKGIVMGDSLGQVASQTLENMYIVSQA---SDLPIYRPLIGMDKEEIVAIAKTIGTFEL 340 (381)
T ss_pred HHHHHHcCCCEEEEcccchhHHHHHHHHHHHHhcc---CCCcEEeeCCCCCHHHHHHHHHHcCCccc
Confidence 99999999999999999999999999998542111 1125677 789999999999999 553
No 34
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=98.33 E-value=2.2e-06 Score=68.97 Aligned_cols=36 Identities=33% Similarity=0.364 Sum_probs=35.1
Q ss_pred HHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHH
Q psy16535 90 FRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVL 125 (333)
Q Consensus 90 ~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~ 125 (333)
.||..+.++|++.|+++|++|||.||++||++++..
T Consensus 48 ~r~~~~~~~a~~~g~~~i~~g~~~~D~~~~~~~~~~ 83 (103)
T cd01986 48 AREEAAKRIAKEKGAETIATGTRRDDVANRALGLTA 83 (103)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHHH
Confidence 799999999999999999999999999999999998
No 35
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=98.31 E-value=2.7e-06 Score=82.16 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=77.9
Q ss_pred cCCCE--EEeccCCCCCCcHHHHHHHHHHh-hchhcccccchh---hhc-CCC---ccchhhhhHHHHHHHHHhHhcc-c
Q psy16535 36 LGVDC--VATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDI---ITI-GRK---NNCTFCGVFRRQALDRGAAMLG-V 104 (333)
Q Consensus 36 ~g~~~--Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v---~~~-~~~---~~~~~cr~~Rr~~l~~~a~~~g-~ 104 (333)
.|.++ |+++|++.. .++.+.+...+++ -+++......+. ... +.. .-|..|...++..|.++|+++| +
T Consensus 40 ~G~~v~av~vd~G~~~-~~E~e~~~~~~~~~lgi~~~vvd~~e~fl~~l~~v~~p~~~r~~~~~~~~~~~~~~A~~~g~~ 118 (311)
T TIGR00884 40 IGDRLTCVFVDHGLLR-KGEAEQVVKTFGDRLGLNLVYVDAKERFLSALKGVTDPEEKRKIIGRVFIEVFEREAKKIGDA 118 (311)
T ss_pred hCCCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCcEEEEeCcHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 45554 446787753 2455666666774 666654322211 110 111 1355677788999999999999 9
Q ss_pred cEEEcccCCcchHHHHHH--HHHh-cCcc-cccc--CCcccc---ccCHHHHHHHHHHcCCCc
Q psy16535 105 DCVATGHNADDIAETVLM--NVLR-GDIA-RLQR--CTDIIT---YAYEKEIVMYAYYKKLVY 158 (333)
Q Consensus 105 ~~ia~aH~~dD~~ET~l~--nl~r-g~~~-~L~~--~~~iiR---~i~k~EI~~y~~~~~l~~ 158 (333)
++|++|||+||++||..- ..+. +.+. ++.. ...+++ .++|+||++|++++|+|+
T Consensus 119 ~~la~Gt~~dD~~Es~~G~~~~iks~~~~~gl~~~~~~~ii~PL~~l~K~EVr~la~~lgLp~ 181 (311)
T TIGR00884 119 EYLAQGTIYPDVIESAAGTAHVIKSHHNVGGLPEDMKLKLVEPLRELFKDEVRKLGKELGLPE 181 (311)
T ss_pred CEEEECCCChhhhhhccChhHhhhccCccccCChhhcCceEEEcccCcHHHHHHHHHHcCCCH
Confidence 999999999999999751 1111 1111 2321 122444 899999999999999994
No 36
>PRK00919 GMP synthase subunit B; Validated
Probab=98.30 E-value=2.6e-06 Score=82.01 Aligned_cols=151 Identities=12% Similarity=0.012 Sum_probs=89.8
Q ss_pred HhhHHHHHHHHHHHHHHHh-cCCCEEE--eccCCCCCCcHHHHHHHHHHhhchhcccccch--h----hhcC-CCccchh
Q psy16535 17 NCTFCGVFRRQALDRGAAM-LGVDCVA--TGHNADDTDDIAETVLMNVLRGDIARLQRCTD--I----ITIG-RKNNCTF 86 (333)
Q Consensus 17 ~~~~~~~~r~~~L~~~~~~-~g~~~Ia--~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~--v----~~~~-~~~~~~~ 86 (333)
.+.+.|-+--..+..++.+ +|.++++ ++|++.. ..+...+.++|+..++...-..+ . .... ...-|.+
T Consensus 25 lVa~SGGVDSsvla~la~~~lG~~v~aV~vD~G~~~--~~E~e~a~~~~~~~i~~~vvd~~e~fl~~L~~v~npe~rr~~ 102 (307)
T PRK00919 25 IIALSGGVDSSVAAVLAHRAIGDRLTPVFVDTGLMR--KGETERIKETFSDMLNLRIVDAKDRFLDALKGVTDPEEKRKI 102 (307)
T ss_pred EEEecCCHHHHHHHHHHHHHhCCeEEEEEEECCCCC--HHHHHHHHHHHhccCCcEEEECCHHHHHhccCCCChHHhhhH
Confidence 3344444444445555544 5665444 5677753 45566667766621443221111 1 1111 1124667
Q ss_pred hhhHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHh--cCcccccc-C-Ccccc---ccCHHHHHHHHHHcCCCce
Q psy16535 87 CGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLR--GDIARLQR-C-TDIIT---YAYEKEIVMYAYYKKLVYF 159 (333)
Q Consensus 87 cr~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~r--g~~~~L~~-~-~~iiR---~i~k~EI~~y~~~~~l~~~ 159 (333)
|...++..|.++|++.|+++|++|||.||.+|+.-. ++ +...+|.. . ..+++ .++|+||.+|++++|+|+.
T Consensus 103 c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~iE~r~~--iks~~nv~gl~~~~~~~Ii~PL~~l~K~EVr~la~~lGLp~~ 180 (307)
T PRK00919 103 IGETFIRVFEEVAKEIGAEYLVQGTIAPDWIESEGG--IKSHHNVGGLPEGMVLKIVEPLRDLYKDEVREVARALGLPEE 180 (307)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCCcchhhccCc--ccccccccccChhhcCCcccCchhCcHHHHHHHHHHcCCChh
Confidence 888899999999999999999999999999998210 11 00012211 0 12344 8999999999999999987
Q ss_pred e---cCCCCCCchhH
Q psy16535 160 S---TECIFAPNAYR 171 (333)
Q Consensus 160 ~---D~~n~~~~~~R 171 (333)
. +++|..--..|
T Consensus 181 ~~~r~p~~~pcLa~R 195 (307)
T PRK00919 181 ISERMPFPGPGLAVR 195 (307)
T ss_pred hhCCCCCCCCceeEE
Confidence 4 66664433333
No 37
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=98.16 E-value=1.3e-05 Score=69.93 Aligned_cols=113 Identities=14% Similarity=-0.011 Sum_probs=68.3
Q ss_pred HHHhcCCCEEEe--ccCCCCCCcHHHHHHHHHHh-hchhcccccchhhhcCCCccchhhhh-HHHHHHHHHhHhccccEE
Q psy16535 32 GAAMLGVDCVAT--GHNADDTDDIAETVLMNVLR-GDIARLQRCTDIITIGRKNNCTFCGV-FRRQALDRGAAMLGVDCV 107 (333)
Q Consensus 32 ~~~~~g~~~Ia~--~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~~~~~~~~~~cr~-~Rr~~l~~~a~~~g~~~i 107 (333)
++.+.|.+++++ +++.. +..+..++..+++ .+ |.. .+ .++. ..+.++.++|.++|+++|
T Consensus 18 ~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~g-~~~----~~----------~~~~~~~~~~l~~~a~~~g~~~i 80 (169)
T cd01995 18 WAKKEGYEVHALSFDYGQR--HAKEEEAAKLIAEKLG-PST----YV----------PARNLIFLSIAAAYAEALGAEAI 80 (169)
T ss_pred HHHHcCCcEEEEEEECCCC--ChhHHHHHHHHHHHHC-CCE----EE----------eCcCHHHHHHHHHHHHHCCCCEE
Confidence 334456665554 34333 2345577888877 33 110 00 1122 245788999999999999
Q ss_pred EcccCCcchH------HHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcCCCceec
Q psy16535 108 ATGHNADDIA------ETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKKLVYFST 161 (333)
Q Consensus 108 a~aH~~dD~~------ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~l~~~~D 161 (333)
++|||.||.+ ++++..+-+...........++| .++|.||.++++++|+||..+
T Consensus 81 ~~G~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~PL~~~~K~ei~~~~~~~g~~~~~s 143 (169)
T cd01995 81 IIGVNAEDYSGYPDCRPEFIEAMNKALNLGTENGIKIHAPLIDLSKAEIVRLGGELGVPLELT 143 (169)
T ss_pred EEeeccCccCCCCCCCHHHHHHHHHHHHhhcCCCeEEEeCcccCCHHHHHHHHhHcCCChhhe
Confidence 9999999964 45543332211100000112444 799999999999999998764
No 38
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.12 E-value=2.1e-05 Score=70.89 Aligned_cols=127 Identities=15% Similarity=-0.032 Sum_probs=78.1
Q ss_pred HHHhcCCCEEEe--ccCCCCCCcHHHHHHHHHHh-hchhcccccchh-hh-----c-C--------------CCccchhh
Q psy16535 32 GAAMLGVDCVAT--GHNADDTDDIAETVLMNVLR-GDIARLQRCTDI-IT-----I-G--------------RKNNCTFC 87 (333)
Q Consensus 32 ~~~~~g~~~Ia~--~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v-~~-----~-~--------------~~~~~~~c 87 (333)
++.+.|.+++++ ++... .+.+...+..+++ -+++......+. .. . . .+..|..|
T Consensus 17 ~~~~~g~~v~~~~~~~~~~--~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (201)
T TIGR00364 17 IAKDEGYEVHAITFDYGQR--HSRELESARKIAEALGIEHHVIDLSLLKQLGGSALTDESEIPPQKSNEEDTLPNTFVPG 94 (201)
T ss_pred HHHHcCCcEEEEEEECCCC--CHHHHHHHHHHHHHhCCCeEEEechhhcccccccccCCCCCCCcCccccCCCCCeeecC
Confidence 334456665554 34332 2556678888888 666643322211 11 0 0 01122234
Q ss_pred hhHHH-HHHHHHhHhccccEEEcccCCcchH------HHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcC--
Q psy16535 88 GVFRR-QALDRGAAMLGVDCVATGHNADDIA------ETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKK-- 155 (333)
Q Consensus 88 r~~Rr-~~l~~~a~~~g~~~ia~aH~~dD~~------ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~-- 155 (333)
|..-+ .....+|+++|++.|++|||.||.+ ++|++++-.....+.....+++| .++|.||+++++++|
T Consensus 95 r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~~~~~d~~~~f~~~~~~~~~~~~~~~~~i~~Pl~~~~K~eI~~la~~~g~~ 174 (201)
T TIGR00364 95 RNAIFLSIAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKAFNHALNLGMLTPVKIRAPLMDLTKAEIVQLADELGVL 174 (201)
T ss_pred CcHHHHHHHHHHHHHCCCCEEEEEeccCcCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEECCcCCCHHHHHHHHHHcCCc
Confidence 44433 7778999999999999999999974 78888776652222111123455 799999999999999
Q ss_pred -CCcee
Q psy16535 156 -LVYFS 160 (333)
Q Consensus 156 -l~~~~ 160 (333)
+++..
T Consensus 175 ~~~~~~ 180 (201)
T TIGR00364 175 DLVIKL 180 (201)
T ss_pred cccHhh
Confidence 77543
No 39
>KOG2594|consensus
Probab=98.05 E-value=1.8e-05 Score=76.29 Aligned_cols=132 Identities=16% Similarity=0.278 Sum_probs=97.9
Q ss_pred hhhhHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcccccc---------C--Ccccc---ccCHHHHHHHH
Q psy16535 86 FCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQR---------C--TDIIT---YAYEKEIVMYA 151 (333)
Q Consensus 86 ~cr~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~---------~--~~iiR---~i~k~EI~~y~ 151 (333)
+-+.+|-..+.++|.+.|++.|..||+.+|.++.++--+..|.|..++. . .+++| ++.+.||..|+
T Consensus 179 Ll~~lk~kll~~vA~~~g~~~i~~g~~~t~la~~vlt~v~~GRG~sis~~v~~~d~r~~~d~~llrPLrDl~~~Ei~~y~ 258 (396)
T KOG2594|consen 179 LLLHLKMKLLQKVAAENGYNRIVLGDSTTDLASHVLTAVVKGRGGSISTDVQVVDKRPKGDVKLLRPLRDLLSLEITSYC 258 (396)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecCchhHHHHHHHHHHHhccCccceehhhhhccccCCCceeehhHHHHHHHHHHHHH
Confidence 3456888999999999999999999999999999999999998865431 1 24555 99999999999
Q ss_pred HHcCCCcee-cCCCCC----CchhHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHhccCCCchhhhhhhcCc
Q psy16535 152 YYKKLVYFS-TECIFA----PNAYRGHART-FLKHLEKIRPASIMDIIHSGEQMAIKEGVKLPNREVCELCGFL 219 (333)
Q Consensus 152 ~~~~l~~~~-D~~n~~----~~~~Rn~iR~-~lp~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ 219 (333)
...|++|.. +..-+. ..-.=|.+-. ++..|++.+|++..++++++.++..-.. ......|..|..+
T Consensus 259 ~l~~l~~~~c~~~~k~~~~~~q~sI~~lT~afva~Lqn~f~S~vsTV~rTaaKl~~~s~--s~~es~C~iCn~~ 330 (396)
T KOG2594|consen 259 LLDGLAYYFCQGRRKTVELASQCSINDLTSAFVALLQNEFPSTVSTVVRTAAKLTVPSF--SMTESFCPICNSP 330 (396)
T ss_pred HhhcCCchhhhHHHhhccchhhccHHHHHHHHHHHHHhhcchHHHHHHhhhhhhcCCCC--CCCcccccccCCc
Confidence 999999522 111111 1122234444 7888889999999999999988854321 1125678888765
No 40
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=97.95 E-value=3.8e-05 Score=73.85 Aligned_cols=122 Identities=11% Similarity=0.050 Sum_probs=79.7
Q ss_pred CCCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhh-hcC----CCccchhhhhHHHHHHHHHhHhccccEEEcc
Q psy16535 37 GVDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDII-TIG----RKNNCTFCGVFRRQALDRGAAMLGVDCVATG 110 (333)
Q Consensus 37 g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~-~~~----~~~~~~~cr~~Rr~~l~~~a~~~g~~~ia~a 110 (333)
.+.+++++.+.. -.+...|+..+++ .+++..+...+-. ..+ ..++|..|..+++.-|.++++++|++.+++|
T Consensus 57 ~~~vl~iDTG~~--FpEt~ef~d~~a~~~gl~l~v~~~~~~i~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G 134 (301)
T PRK05253 57 PFPLLHVDTGWK--FPEMIEFRDRRAKELGLELIVHSNPEGIARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGG 134 (301)
T ss_pred CeeEEEEeCCCC--CHHHHHHHHHHHHHhCCCEEEEeChHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEec
Confidence 345666543332 1355678999999 8887655432211 111 1236888999999999999999999999999
Q ss_pred cCCcchH----HHHHH---HHHhcCcc----ccc-------cCCcccc-----ccCHHHHHHHHHHcCCCcee
Q psy16535 111 HNADDIA----ETVLM---NVLRGDIA----RLQ-------RCTDIIT-----YAYEKEIVMYAYYKKLVYFS 160 (333)
Q Consensus 111 H~~dD~~----ET~l~---nl~rg~~~----~L~-------~~~~iiR-----~i~k~EI~~y~~~~~l~~~~ 160 (333)
|+.||.. |+++. +..+++.. .+. ..+..+| .+++.||-.|+..+|||+..
T Consensus 135 ~RrDE~~~Ra~e~~fs~r~~~~~wd~~~q~Pelw~~~~~~~~~g~~~rV~PL~~Wte~DIw~Yi~~~~IP~~p 207 (301)
T PRK05253 135 ARRDEEKSRAKERIFSFRDEFGQWDPKNQRPELWNLYNGRINKGEHIRVFPLSNWTELDIWQYIERENIPIVP 207 (301)
T ss_pred cccchhhhhccCccccccccccccCccccChhhhhhccccccCCCeEEEeehhhCCHHHHHHHHHHcCCCCCc
Confidence 9999954 44442 22222211 010 0122344 89999999999999999844
No 41
>PRK00509 argininosuccinate synthase; Provisional
Probab=97.89 E-value=0.00014 Score=72.38 Aligned_cols=82 Identities=16% Similarity=0.106 Sum_probs=60.5
Q ss_pred ccchhhhhHHHHHHHHHhHhccccEEEcccCC--cchHHHHHHHHHhcCccccccCCcccc--cc-CHHHHHHHHHHcCC
Q psy16535 82 NNCTFCGVFRRQALDRGAAMLGVDCVATGHNA--DDIAETVLMNVLRGDIARLQRCTDIIT--YA-YEKEIVMYAYYKKL 156 (333)
Q Consensus 82 ~~~~~cr~~Rr~~l~~~a~~~g~~~ia~aH~~--dD~~ET~l~nl~rg~~~~L~~~~~iiR--~i-~k~EI~~y~~~~~l 156 (333)
++|++||..-...+.++|++.|+++|++|||. |||+. +..-++.-...+ ++..++| .+ +|+|+.+||+++||
T Consensus 88 l~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~kGnDq~r--f~~g~~al~pel-~VisPlre~~~~tK~eir~~A~~~Gi 164 (399)
T PRK00509 88 LGTALARPLIAKKLVEIARKEGADAVAHGCTGKGNDQVR--FELGIAALAPDL-KVIAPWREWDLKSREELIAYAEEHGI 164 (399)
T ss_pred CchHHHHHHHHHHHHHHHHHcCCCEEEeCCCcCCCCHHH--HHHHHHHhCCCC-eeecchhhcCCCCHHHHHHHHHHcCC
Confidence 59999998889999999999999999999999 99853 322233221122 2233455 56 99999999999999
Q ss_pred Cceec-CCCCC
Q psy16535 157 VYFST-ECIFA 166 (333)
Q Consensus 157 ~~~~D-~~n~~ 166 (333)
|+..+ ..||+
T Consensus 165 pv~~~~~~~yS 175 (399)
T PRK00509 165 PIPVTKKSPYS 175 (399)
T ss_pred CCCCCCCCCCc
Confidence 97542 23454
No 42
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=97.86 E-value=0.00016 Score=71.94 Aligned_cols=134 Identities=12% Similarity=0.037 Sum_probs=84.6
Q ss_pred HHHHHHhcCCCEEEe--ccCCCCCCcHHHHHHHHHHh-hch-hccccc-c-hh------hhcC------CCc--cchhhh
Q psy16535 29 LDRGAAMLGVDCVAT--GHNADDTDDIAETVLMNVLR-GDI-ARLQRC-T-DI------ITIG------RKN--NCTFCG 88 (333)
Q Consensus 29 L~~~~~~~g~~~Ia~--~H~ld~~~D~~Etfv~nl~r-g~i-~~l~~~-~-~v------~~~~------~~~--~~~~cr 88 (333)
+..++++.|++++++ +++.. +.+...+.++|. -++ +..... . .. .... .+- ..++||
T Consensus 15 ll~~l~e~g~~V~av~id~Gq~---~~e~~~a~~~a~~lGi~~~~viD~~~ef~~~~~~~~i~~n~~y~~~Y~l~t~laR 91 (394)
T TIGR00032 15 CLKWLREKGYEVIAYTADVGQP---EEDIDAIPEKALEYGAENHYTIDAREEFVKDYGFAAIQANAFYEGTYPLSTALAR 91 (394)
T ss_pred HHHHHHHcCCEEEEEEEecCCC---hHHHHHHHHHHHHhCCCeEEEEeCHHHHHHhhchhhhcCCccccCcccccchhhH
Confidence 334455558887775 45543 456677788888 554 332111 1 11 1000 111 234678
Q ss_pred hHHHHHHHHHhHhccccEEEcccCC--cchHHHHHHHHHhcCccccccCCcccc--ccCHHHHHHHHHHcCCCceecC-C
Q psy16535 89 VFRRQALDRGAAMLGVDCVATGHNA--DDIAETVLMNVLRGDIARLQRCTDIIT--YAYEKEIVMYAYYKKLVYFSTE-C 163 (333)
Q Consensus 89 ~~Rr~~l~~~a~~~g~~~ia~aH~~--dD~~ET~l~nl~rg~~~~L~~~~~iiR--~i~k~EI~~y~~~~~l~~~~D~-~ 163 (333)
.+++..+.++|++.|+++|++|||. ||++. +.+..+....++.-.. ++| .++|+|+.+|++++|||+..+. +
T Consensus 92 ~li~~~l~~~A~~~G~~~Ia~G~t~~gnDqvr--f~r~~~~~~~~l~via-PLrew~l~r~ei~~ya~~~Gip~~~~~~~ 168 (394)
T TIGR00032 92 PLIAKKLVEAAKKEGANAVAHGCTGKGNDQER--FERSIRLLNPDLKVIA-PWRDLNFTREEEIEYAIQCGIPYPMSKEK 168 (394)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCCcchHHH--HHHHHHHhCCCCeEEC-chhhcCCCHHHHHHHHHHcCCCeeEecCC
Confidence 8999999999999999999999977 58765 3444443223333222 344 6899999999999999998764 6
Q ss_pred CCCCc
Q psy16535 164 IFAPN 168 (333)
Q Consensus 164 n~~~~ 168 (333)
|++.+
T Consensus 169 pys~d 173 (394)
T TIGR00032 169 PYSID 173 (394)
T ss_pred CCcCC
Confidence 65433
No 43
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=97.81 E-value=0.00013 Score=72.67 Aligned_cols=123 Identities=20% Similarity=0.130 Sum_probs=80.2
Q ss_pred HHHHhcCCCEEEeccCC-CCCCcHHHHHHHHHHh--h----chhccccc-chhh-hcCC----CccchhhhhHHHHHHHH
Q psy16535 31 RGAAMLGVDCVATGHNA-DDTDDIAETVLMNVLR--G----DIARLQRC-TDII-TIGR----KNNCTFCGVFRRQALDR 97 (333)
Q Consensus 31 ~~~~~~g~~~Ia~~H~l-d~~~D~~Etfv~nl~r--g----~i~~l~~~-~~v~-~~~~----~~~~~~cr~~Rr~~l~~ 97 (333)
.++.+.|++++++.-+. +..++.+...+..+|+ + +++.+.-. .++. .... +..|..||.+++..+..
T Consensus 194 ~l~~k~G~~v~av~~~~~~~~~~~~~~~~~~~a~~l~~~~~~i~~~vv~~~~~~~~i~~~~~~~~~~v~~Rr~~~~~a~~ 273 (394)
T PRK01565 194 YLAMKRGVEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRIKLHVVPFTEIQEEIKKKVPESYLMTLMRRFMMRIADK 273 (394)
T ss_pred HHHHHCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEEEECHHHHHHHhhcCCCceEEEeHHHHHHHHHHH
Confidence 44445688777654222 2223445566666666 2 24543222 1221 1111 12466899999999999
Q ss_pred HhHhccccEEEcccCCcchHHHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcCC
Q psy16535 98 GAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKKL 156 (333)
Q Consensus 98 ~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~l 156 (333)
+|++.|++.|+||||++|.+++.+.++. +... .. ..+++| .++|+||.+++++.|.
T Consensus 274 ~A~~~g~~~IvtG~~~~d~~sqt~~~l~-~i~~-~~-~~~V~rPLig~~K~EI~~lAr~iG~ 332 (394)
T PRK01565 274 IAEKRGALAIVTGESLGQVASQTLESMY-AINA-VT-NLPVLRPLIGMDKEEIIEIAKEIGT 332 (394)
T ss_pred HHHHcCCCEEEEccccccccHHHHHHHH-HHhh-cc-CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999988887774 2111 11 123555 8999999999999997
No 44
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=97.74 E-value=0.00017 Score=67.28 Aligned_cols=104 Identities=11% Similarity=-0.031 Sum_probs=70.2
Q ss_pred cHHHHHHHHHHh-hchhccccc-chhhh-------c--CCC---ccchhhhhHHHHHHHHHhHhccccEEEcccCCcchH
Q psy16535 52 DIAETVLMNVLR-GDIARLQRC-TDIIT-------I--GRK---NNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIA 117 (333)
Q Consensus 52 D~~Etfv~nl~r-g~i~~l~~~-~~v~~-------~--~~~---~~~~~cr~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ 117 (333)
+.+...+..+|+ .+++..... .+... . ... ..|..|..+|+..|..+|+++|+.+|+||||.++.
T Consensus 63 ~~e~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~E~~- 141 (250)
T TIGR00552 63 EQDVQDALALAEPLGINYKNIDIAPIAASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKSELM- 141 (250)
T ss_pred HHHHHHHHHHHHHhCCeEEEEcchHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHHHHh-
Confidence 567888999999 777754322 11111 0 011 24677888999999999999999999999997652
Q ss_pred HHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcCCCce-ecCCC
Q psy16535 118 ETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKKLVYF-STECI 164 (333)
Q Consensus 118 ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~l~~~-~D~~n 164 (333)
.|........+..++ .++|.||..||+.+|+|.. .+.+|
T Consensus 142 --------~G~~t~~gd~~~~i~PL~~l~K~eV~~lA~~~g~p~~i~~k~p 184 (250)
T TIGR00552 142 --------LGYFTKYGDGGCDIAPIGDLFKTQVYELAKRLNVPERIIEKPP 184 (250)
T ss_pred --------hCCeecccCCccCccccCCCcHHHHHHHHHHHCccHHHhCCCC
Confidence 232211111122333 8999999999999999964 34444
No 45
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=97.73 E-value=1.7e-05 Score=77.85 Aligned_cols=148 Identities=23% Similarity=0.240 Sum_probs=81.4
Q ss_pred HHHhcCCCEEEeccCC-CCCC--------cHHHHHHHHHHh-hchhcccccc------hhh-----hc--C-CCccchhh
Q psy16535 32 GAAMLGVDCVATGHNA-DDTD--------DIAETVLMNVLR-GDIARLQRCT------DII-----TI--G-RKNNCTFC 87 (333)
Q Consensus 32 ~~~~~g~~~Ia~~H~l-d~~~--------D~~Etfv~nl~r-g~i~~l~~~~------~v~-----~~--~-~~~~~~~c 87 (333)
+.++.|.+++.+.-.+ +.++ ..+..-+..+|+ -+||+..... .|. .+ + ..|||..|
T Consensus 19 LLk~~G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~~Vi~~f~~~Y~~G~TPNPcv~C 98 (356)
T PF03054_consen 19 LLKEQGYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWEEVIEPFLDEYRKGRTPNPCVLC 98 (356)
T ss_dssp HHHHCT-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHHHTHHHHHHHHHTT----HHHHH
T ss_pred HHHhhcccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHHHHHHHHHHHHhcCCCCChHHhh
Confidence 4567788888864322 2111 135667788888 6788654321 111 11 1 24799999
Q ss_pred hh-HHHHHHHHHhHh-ccccEEEcccCCcchHH--HHHHHHHhcCcc-----c-cccCC--------ccccccCHHHHHH
Q psy16535 88 GV-FRRQALDRGAAM-LGVDCVATGHNADDIAE--TVLMNVLRGDIA-----R-LQRCT--------DIITYAYEKEIVM 149 (333)
Q Consensus 88 r~-~Rr~~l~~~a~~-~g~~~ia~aH~~dD~~E--T~l~nl~rg~~~-----~-L~~~~--------~iiR~i~k~EI~~ 149 (333)
+. ++...|.++|.+ .|+++|||||.+.-.-. +=...|.||... . |.+.. .++-.++|+|+++
T Consensus 99 N~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~~~~~~~~L~r~~D~~KDQSYfL~~l~~~~L~~~~FPLG~~~K~eVR~ 178 (356)
T PF03054_consen 99 NRFIKFGALLEYADEGLGADYIATGHYARIEKDEKNGRYRLLRGADPKKDQSYFLSRLPQEQLSRLIFPLGELTKEEVRE 178 (356)
T ss_dssp HHHTTTTHHHHHHHTTTT-SEEE---SEEEEEES-TTEEEEEE-SSTTC--GGGGTT--HHHHCCEE-TCCCS-HHHHHH
T ss_pred chhhhHHHHHHHHHhhcCCCeeccceeEEEEeeccCCceEEEecCCCCCCceEEEEecCHHHHHhhcCCCCCCCHHHHHH
Confidence 95 889999999999 99999999998753211 000011122100 0 11111 1122889999999
Q ss_pred HHHHcCCCcee-----cCCCCCCchhHHHHHHHHH
Q psy16535 150 YAYYKKLVYFS-----TECIFAPNAYRGHARTFLK 179 (333)
Q Consensus 150 y~~~~~l~~~~-----D~~n~~~~~~Rn~iR~~lp 179 (333)
.|++.|++..+ |-|.-.....+.++++.++
T Consensus 179 iA~~~gl~~a~k~eSq~iCFi~~~~~~~fl~~~~~ 213 (356)
T PF03054_consen 179 IAREAGLPVAEKKESQGICFIGDGDYREFLKRYLP 213 (356)
T ss_dssp HHHHCT-TTTT-----SSTTTCCCHHHHHHCTTS-
T ss_pred HHHhcCCcccCccccceEEEecCCcHHHhhhhccc
Confidence 99999999654 7777777777887776555
No 46
>KOG2840|consensus
Probab=97.69 E-value=1e-05 Score=77.29 Aligned_cols=68 Identities=72% Similarity=1.108 Sum_probs=57.9
Q ss_pred ccc-chhhhc---cC--CchHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccc
Q psy16535 3 LTH-WTLDLE---IG--RKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCT 73 (333)
Q Consensus 3 ~~~-~~~~~~---~~--~~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~ 73 (333)
+|. ||++.+ +. .++.|.+|+++|+++|.+-+...|+..++++|+.| |-+||++||+++|.+.-+.+..
T Consensus 123 l~~~~tmd~i~~~i~~~~rn~ctfCgv~RrqaL~~ga~~l~~~~~~tghnaD---D~aetvl~n~lrgds~rl~R~~ 196 (347)
T KOG2840|consen 123 LYGEWTMDEIVSEIGQEIRNNCTFCGVFRRQALDRGADVLGAAELVTGHNAD---DWAETVLMNLLRGDSARLERLT 196 (347)
T ss_pred HhccchHHHHHHHHhhhhhcCceeecHHHHHHHHhhccccchhhhhhcccch---HHHHHHHHHHHHhHHHHhhhcc
Confidence 455 888832 44 58899999999999999999999999999999999 9999999999998766554443
No 47
>PRK08349 hypothetical protein; Validated
Probab=97.65 E-value=0.00016 Score=65.10 Aligned_cols=77 Identities=21% Similarity=0.285 Sum_probs=59.5
Q ss_pred CchHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhHHHH
Q psy16535 14 RKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQ 93 (333)
Q Consensus 14 ~~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~ 93 (333)
.+++|..|+.+++.++..++++.|+++|++|||++ |.+++.++|+..++... ++. -.+|.. .+...
T Consensus 82 ~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~---d~a~~~l~nl~~~~~~~-----~i~--i~rPL~----~~~K~ 147 (198)
T PRK08349 82 EKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLG---QVASQTLDNLMVISTAT-----DLP--VLRPLI----GLDKE 147 (198)
T ss_pred CCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCc---hHHHHHHHHHhcccccc-----CCe--EEcCCC----CCCHH
Confidence 46799999999999999999999999999999999 88999999998853110 011 112222 25678
Q ss_pred HHHHHhHhccc
Q psy16535 94 ALDRGAAMLGV 104 (333)
Q Consensus 94 ~l~~~a~~~g~ 104 (333)
.+.+++++.|.
T Consensus 148 eI~~~a~~~g~ 158 (198)
T PRK08349 148 EIVKIAKEIGT 158 (198)
T ss_pred HHHHHHHHcCC
Confidence 88888888884
No 48
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=97.55 E-value=0.00096 Score=66.29 Aligned_cols=84 Identities=17% Similarity=0.058 Sum_probs=59.0
Q ss_pred ccchhhhhHHHHHHHHHhHhccccEEEcccCCc--chHHHHHHHHHhcCccccccCCccccc---cCHHHHHHHHHHcCC
Q psy16535 82 NNCTFCGVFRRQALDRGAAMLGVDCVATGHNAD--DIAETVLMNVLRGDIARLQRCTDIITY---AYEKEIVMYAYYKKL 156 (333)
Q Consensus 82 ~~~~~cr~~Rr~~l~~~a~~~g~~~ia~aH~~d--D~~ET~l~nl~rg~~~~L~~~~~iiR~---i~k~EI~~y~~~~~l 156 (333)
+++++||.+-...+.++|++.|+++|++|||.+ |+.. +...++-....+. ...++|. ++|+|+.+||+++||
T Consensus 85 l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~~gnDq~r--f~~~~~al~pel~-ViaPlre~~~~sr~ev~~~A~~~Gi 161 (385)
T cd01999 85 LGTALARPLIAKALVEVAKEEGADAVAHGCTGKGNDQVR--FELAFYALNPDLK-IIAPWRDWEFLSREEEIEYAEEHGI 161 (385)
T ss_pred CCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCcHHH--HHHHHHhhCCCCE-EEcchhhhhcCCHHHHHHHHHHcCC
Confidence 367889988888999999999999999999984 8752 1111111101111 1223454 499999999999999
Q ss_pred Cceec-CCCCCCc
Q psy16535 157 VYFST-ECIFAPN 168 (333)
Q Consensus 157 ~~~~D-~~n~~~~ 168 (333)
|+... .|||+.+
T Consensus 162 p~~~~~~~pyS~d 174 (385)
T cd01999 162 PVPVTKKKPYSID 174 (385)
T ss_pred CCcccCCCCCccC
Confidence 98765 6887633
No 49
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=97.44 E-value=0.00023 Score=66.33 Aligned_cols=77 Identities=27% Similarity=0.290 Sum_probs=62.1
Q ss_pred CccchhhhhHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCccccc-----cCC-cccc-ccCHHHHHHHHHH
Q psy16535 81 KNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQ-----RCT-DIIT-YAYEKEIVMYAYY 153 (333)
Q Consensus 81 ~~~~~~cr~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~-----~~~-~iiR-~i~k~EI~~y~~~ 153 (333)
.+.|.+|....+..+.+.|.+.|++.|++|.|+||.- +.-+|++ ++. |++- .++++||.+|++.
T Consensus 91 ~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~---------~~RPG~rA~kE~gi~sPl~e~gitk~eIre~a~~ 161 (269)
T COG1606 91 ENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLF---------DYRPGLRALKELGIRSPLAEFGITKKEIREIAKS 161 (269)
T ss_pred CCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhc---------CCCcchhhHHhcCCCChHHHhCCcHHHHHHHHHH
Confidence 3589999999999999999999999999999999942 2334443 222 4444 8999999999999
Q ss_pred cCCCce---ecCCCCC
Q psy16535 154 KKLVYF---STECIFA 166 (333)
Q Consensus 154 ~~l~~~---~D~~n~~ 166 (333)
.|++|+ ...|..+
T Consensus 162 lgl~~~~kp~~aCl~s 177 (269)
T COG1606 162 LGLPTWDKPSMACLAS 177 (269)
T ss_pred cCCCcccCcccccccc
Confidence 999999 4666643
No 50
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=97.33 E-value=0.00082 Score=59.12 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=59.5
Q ss_pred CCchHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhHHH
Q psy16535 13 GRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRR 92 (333)
Q Consensus 13 ~~~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~Rr 92 (333)
...++|..|+.+++.++..++++.|+++|++|||.+ |..++.++++...+. .. ++. -.+|.. .+.+
T Consensus 79 ~~~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~---D~~~~~~~~l~~~~~---~~--~~~--i~rPl~----~~~K 144 (177)
T cd01712 79 KEKYRCILCKRMMYRIAEKLAEELGADAIVTGESLG---QVASQTLENLLVISS---GT--DLP--ILRPLI----GFDK 144 (177)
T ss_pred CCccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCcc---cchHHHHHhhhhccc---CC--CCe--EECCCC----CCCH
Confidence 346799999999999999999999999999999999 788888888877320 00 000 112222 2567
Q ss_pred HHHHHHhHhcccc
Q psy16535 93 QALDRGAAMLGVD 105 (333)
Q Consensus 93 ~~l~~~a~~~g~~ 105 (333)
..+.++++++|+.
T Consensus 145 ~eI~~~a~~~gl~ 157 (177)
T cd01712 145 EEIIGIARRIGTY 157 (177)
T ss_pred HHHHHHHHHcCCc
Confidence 8899999998875
No 51
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=97.26 E-value=0.0019 Score=61.90 Aligned_cols=121 Identities=9% Similarity=-0.000 Sum_probs=78.3
Q ss_pred CCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhh-hcCC----CccchhhhhHHHHHHHHHhHhccccEEEccc
Q psy16535 38 VDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDII-TIGR----KNNCTFCGVFRRQALDRGAAMLGVDCVATGH 111 (333)
Q Consensus 38 ~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~-~~~~----~~~~~~cr~~Rr~~l~~~a~~~g~~~ia~aH 111 (333)
+.+++++.+..- .+...|+..+++ .+++..+...+-. ..+. .++...|+.++...|.+++.++|++.+++||
T Consensus 50 ~~vl~IDTG~~F--~Et~efrd~~a~~~gl~l~v~~~~~~~~~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~ 127 (294)
T TIGR02039 50 FPLLHVDTGWKF--REMIAFRDHMVAKYGLRLIVHSNEEGIADGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGA 127 (294)
T ss_pred eEEEEEecCCCC--HHHHHHHHHHHHHhCCCEEEEechhhhhcCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecC
Confidence 456665433321 357778899998 7777654332211 1111 1233457788899999999999999999999
Q ss_pred CCcchHHHHHH-------HHHhcCcc----ccc----c---CCcccc-----ccCHHHHHHHHHHcCCCcee
Q psy16535 112 NADDIAETVLM-------NVLRGDIA----RLQ----R---CTDIIT-----YAYEKEIVMYAYYKKLVYFS 160 (333)
Q Consensus 112 ~~dD~~ET~l~-------nl~rg~~~----~L~----~---~~~iiR-----~i~k~EI~~y~~~~~l~~~~ 160 (333)
+.||.....-. +..+++.. .+- + .+..+| .+++.||-.|+..+|||+..
T Consensus 128 RRDEe~sRake~i~s~r~~~~~wD~~~q~Pelw~~~~~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~p 199 (294)
T TIGR02039 128 RRDEEKSRAKERIFSFRNAFHQWDPKKQRPELWNLYNGRISKGESVRVFPLSNWTELDIWRYIAAENIPIVP 199 (294)
T ss_pred ChhhhhHhhcCceeeccccccccCccccCchhhhccccccccCCcEEEechhhCCHHHHHHHHHHcCCCCCc
Confidence 99998766532 23333211 010 0 122344 89999999999999999844
No 52
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=97.25 E-value=0.0002 Score=70.09 Aligned_cols=101 Identities=20% Similarity=0.180 Sum_probs=66.3
Q ss_pred chHhhHHHH-HHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhc-h----hcccccchhhhcC--CCccchh
Q psy16535 15 KNNCTFCGV-FRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGD-I----ARLQRCTDIITIG--RKNNCTF 86 (333)
Q Consensus 15 ~~~~~~~~~-~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~-i----~~l~~~~~v~~~~--~~~~~~~ 86 (333)
.++|..|.+ +||.+|.+.++++|+++||+|||+| |+.++ ++++|. . .++....+..... ..|..
T Consensus 93 pnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~---d~~~~---~L~rg~d~~kDqsy~l~~l~~~~l~~~i~PL~-- 164 (346)
T PRK00143 93 PNPCVLCNKEIKFKAFLEYARELGADYIATGHYAR---IRDGR---ELLRGVDPNKDQSYFLYQLTQEQLAKLLFPLG-- 164 (346)
T ss_pred CCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeecc---ccccc---eEEEccCCCcChhhhhccCCHHHhcceeccCc--
Confidence 579999999 7899999999999999999999999 66666 677752 1 1222211111111 12222
Q ss_pred hhhHHHHHHHHHhHhccccEEEcccCCc------chHHHHHHHHH
Q psy16535 87 CGVFRRQALDRGAAMLGVDCVATGHNAD------DIAETVLMNVL 125 (333)
Q Consensus 87 cr~~Rr~~l~~~a~~~g~~~ia~aH~~d------D~~ET~l~nl~ 125 (333)
.+.+..+.++|+++|+.+....-.+| .-...||.+++
T Consensus 165 --~~~K~eVr~~A~~~gl~~~~k~~s~~icf~~~~~~~~fl~~~~ 207 (346)
T PRK00143 165 --ELTKPEVREIAEEAGLPVAKKKDSQGICFIGERDYRDFLKRYL 207 (346)
T ss_pred --cCCHHHHHHHHHHcCCCcCCCCCCCcccCCCchhHHHHHHHhc
Confidence 25788999999999997643333321 23445665554
No 53
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0017 Score=63.56 Aligned_cols=149 Identities=19% Similarity=0.175 Sum_probs=90.5
Q ss_pred HHHHhcCCCEEEeccCC---CC----CCcHHHHHHHHHHh-hchhcccccc-----h-h-----hhc--C-CCccchhh-
Q psy16535 31 RGAAMLGVDCVATGHNA---DD----TDDIAETVLMNVLR-GDIARLQRCT-----D-I-----ITI--G-RKNNCTFC- 87 (333)
Q Consensus 31 ~~~~~~g~~~Ia~~H~l---d~----~~D~~Etfv~nl~r-g~i~~l~~~~-----~-v-----~~~--~-~~~~~~~c- 87 (333)
.+.++.|.+++.+.=.+ +. .+.++-.-+.+.|. =+||...... + | .++ + ..|||..|
T Consensus 21 ~lLk~QGyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~~V~~~f~~~Y~~G~TPNPci~CN 100 (356)
T COG0482 21 YLLKEQGYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKEFWNKVFEYFLAEYKAGKTPNPCILCN 100 (356)
T ss_pred HHHHHcCCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHHHHHHHHHHHHHHHHhCCCCCCcchhcC
Confidence 34456688888864111 11 23455556777777 6677654331 1 1 111 1 24699999
Q ss_pred hhHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcc-c-----cccC-----Cc-ccc--ccCHHHHHHHHHH
Q psy16535 88 GVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIA-R-----LQRC-----TD-IIT--YAYEKEIVMYAYY 153 (333)
Q Consensus 88 r~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~-~-----L~~~-----~~-iiR--~i~k~EI~~y~~~ 153 (333)
+.+....|.++|.++|+++|||||.+-=.-.---..+.||... . |... .. +.+ .++|.|++..|++
T Consensus 101 ~~iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~r~~D~~KDQsYfL~~~~~~ql~~~lFPlG~l~K~evR~iA~~ 180 (356)
T COG0482 101 KEIKFKALLDYAKELGADYIATGHYARQREDEGIELLLRGVDLNKDQSYFLYALSQEQLERLLFPLGDLEKLEVRPIAAE 180 (356)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeeeEeeecCCcccccccCCCcccchhheecccCHHHHhhccccCCCCCHHHHHHHHHH
Confidence 7899999999999999999999998863210001123333221 0 1111 11 122 7899999999999
Q ss_pred cCCCcee--c---CCCCCCchhHHHHHHHHH
Q psy16535 154 KKLVYFS--T---ECIFAPNAYRGHARTFLK 179 (333)
Q Consensus 154 ~~l~~~~--D---~~n~~~~~~Rn~iR~~lp 179 (333)
.|++... | -|.-....++.++.+.+|
T Consensus 181 ~gL~~a~KkdS~~ICFi~~~~~~~fl~~~~p 211 (356)
T COG0482 181 KGLPTAKKKDSQGICFIGERKFKDFLGRYLP 211 (356)
T ss_pred cCCCccCcccCCcceecCCCCHHHHHHhhCC
Confidence 9999775 3 344444556666655555
No 54
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=97.19 E-value=0.002 Score=60.24 Aligned_cols=129 Identities=22% Similarity=0.245 Sum_probs=77.9
Q ss_pred CchHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhHHHH
Q psy16535 14 RKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQ 93 (333)
Q Consensus 14 ~~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~ 93 (333)
....|..|+..++..+.+++++.|+++|++|||.| |..+. + |++... .......|..-+ .+.+.
T Consensus 84 ~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~d---D~~~~------r---pg~~a~---~~~~~~~PL~~~-~l~K~ 147 (252)
T TIGR00268 84 VEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNAD---DLFDH------R---PGYRAV---KEFNGVSPWAEF-GITKK 147 (252)
T ss_pred CCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCc---ccccc------c---HHHHHH---HHcCCCCcchhc-CCCHH
Confidence 45679999999999999999999999999999999 55431 1 111111 111111232211 14688
Q ss_pred HHHHHhHhccccEEE--------c----ccCCc-------chHHHHHHHHHhcCc-cccccCCcccc-ccC---------
Q psy16535 94 ALDRGAAMLGVDCVA--------T----GHNAD-------DIAETVLMNVLRGDI-ARLQRCTDIIT-YAY--------- 143 (333)
Q Consensus 94 ~l~~~a~~~g~~~ia--------~----aH~~d-------D~~ET~l~nl~rg~~-~~L~~~~~iiR-~i~--------- 143 (333)
.+.++|+++|++++. + |+..+ +.+|.+|..+ |-. .+++-.+.+.| +++
T Consensus 148 eIr~la~~~gl~~~~~ps~~Cl~sr~~~g~~it~~~l~~v~~~E~~l~~~--g~~~~rvr~~~~~a~ie~~~~~~~~~~~ 225 (252)
T TIGR00268 148 EIREIAKSLGISFPDKPSEACLASRFPFGREIDEEKLKMVDEAEEVLRNA--GVGQVRVRNYDNLAVIEVPEDELSKLLN 225 (252)
T ss_pred HHHHHHHHcCCCccCCCCCCceEeecCCCCcCCHHHHHHHHHHHHHHHHc--CCCeEEEEecCCeEEEEECHHHHHHHHh
Confidence 999999999987551 1 22233 2567777763 311 12222334444 333
Q ss_pred -HHHHHHHHHHcCCCcee
Q psy16535 144 -EKEIVMYAYYKKLVYFS 160 (333)
Q Consensus 144 -k~EI~~y~~~~~l~~~~ 160 (333)
+++|...+++.|+.++.
T Consensus 226 ~~~~i~~~~~~~gf~~v~ 243 (252)
T TIGR00268 226 EAEEVRDKFKDIGFRKVL 243 (252)
T ss_pred hHHHHHHHHHHcCCCeEE
Confidence 45566666777777664
No 55
>PF09179 TilS: TilS substrate binding domain; InterPro: IPR015262 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the substrate-binding domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 1NI5_A 3A2K_A.
Probab=97.09 E-value=0.00073 Score=50.12 Aligned_cols=59 Identities=19% Similarity=0.083 Sum_probs=44.2
Q ss_pred HHhccCCcccccHHHHHHHHHHhhcCCCCCCChHHHHHHHHHh-hCCCCCeeecCC------cccceeee
Q psy16535 233 GLNKGLPKLSLSKRSVQDRIRQENYSKVQSITGYRDDSLETVK-QNKEDYQMDLKI------LSYDELYG 295 (333)
Q Consensus 233 ~~~~~l~~~~~~~~r~i~~~l~~~~~~~~~~s~~hi~~i~~ll-~~~~g~~i~Lp~------~~y~~l~~ 295 (333)
..+..+|++. |+++|+.||.+.+ ...++.+|+++|.+.+ ...+++++++|. +.|+.||.
T Consensus 4 ~~l~~l~~~~--q~~lLR~wL~~~g--~~~ps~~~l~~i~~~l~~~~~~~~~~l~~~~~~vrr~~~~L~l 69 (69)
T PF09179_consen 4 SALRQLPPAR--QRRLLRRWLRQLG--LPMPSQAHLEQILRQLIQAKPDAQPQLPWAGGEVRRYRGRLYL 69 (69)
T ss_dssp HHHCCS-HHH--HHHHHHHHHHHTT---T--HHHHHHHHHHHCCTS-CCCEEEECCTTEEEEECTTEEEE
T ss_pred HHHhcCCHHH--HHHHHHHHHHHCC--CCCCCHHHHHHHHHHHhhhCCCCceEEEeCCEEEEEECCEEEC
Confidence 3467899999 9999999999983 3789999999999888 456689999993 46666663
No 56
>PLN00200 argininosuccinate synthase; Provisional
Probab=97.05 E-value=0.0047 Score=61.74 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=54.4
Q ss_pred hhhhHHHHHHHHHhHhccccEEEcccCC--cchHHHHHHHHHhcCccccccCCcccc--cc-CHHHHHHHHHHcCCCcee
Q psy16535 86 FCGVFRRQALDRGAAMLGVDCVATGHNA--DDIAETVLMNVLRGDIARLQRCTDIIT--YA-YEKEIVMYAYYKKLVYFS 160 (333)
Q Consensus 86 ~cr~~Rr~~l~~~a~~~g~~~ia~aH~~--dD~~ET~l~nl~rg~~~~L~~~~~iiR--~i-~k~EI~~y~~~~~l~~~~ 160 (333)
++|-+-...+.++|++.|+++|++|||. |||+. +..-++.-...+ ++..++| .+ +|+|+.+||+++|||+..
T Consensus 96 l~Rp~i~~~lv~~A~~~G~~~VahG~tgkGnDq~r--f~~~~~al~pel-~ViaPlre~~~~~r~e~~~~A~~~Gipv~~ 172 (404)
T PLN00200 96 MARPLIAKAMVDIAKEVGADAVAHGATGKGNDQVR--FELTFFALNPEL-KVVAPWREWDIKGREDLIEYAKKHNIPVPV 172 (404)
T ss_pred hhhHHHHHHHHHHHHHcCCCEEEeCCcCCCCcHHH--HHHHHHHhCCCC-eeeCchhhcCCCCHHHHHHHHHHcCCCCCC
Confidence 3455668888999999999999999999 99853 322233221122 2333455 56 599999999999999764
Q ss_pred c-CCCCC
Q psy16535 161 T-ECIFA 166 (333)
Q Consensus 161 D-~~n~~ 166 (333)
. ..||+
T Consensus 173 ~~~~~yS 179 (404)
T PLN00200 173 TKKSIYS 179 (404)
T ss_pred CCCCCCc
Confidence 3 34554
No 57
>PRK04527 argininosuccinate synthase; Provisional
Probab=96.85 E-value=0.011 Score=59.08 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=54.0
Q ss_pred cchhhhhHHHHHHHHHhHhccccEEEcccC--CcchHHHHHHHHHhcCccccccCCcccc--cc----CHHHHHHHHHHc
Q psy16535 83 NCTFCGVFRRQALDRGAAMLGVDCVATGHN--ADDIAETVLMNVLRGDIARLQRCTDIIT--YA----YEKEIVMYAYYK 154 (333)
Q Consensus 83 ~~~~cr~~Rr~~l~~~a~~~g~~~ia~aH~--~dD~~ET~l~nl~rg~~~~L~~~~~iiR--~i----~k~EI~~y~~~~ 154 (333)
+|. .|-+....+.++|++.|+++|++|+| .|||+. ++.-++-- ..+ +...++| .+ .|+|..+||+++
T Consensus 90 ~~~-nR~~~~~~l~e~A~~~G~~~IA~G~tgkgnDq~r--frpg~~Al-~el-~ViaPlre~~~~k~~~R~~~i~ya~~~ 164 (400)
T PRK04527 90 LVS-DRYLIVDAALKRAEELGTRIIAHGCTGMGNDQVR--FDLAVKAL-GDY-QIVAPIREIQKEHTQTRAYEQKYLEER 164 (400)
T ss_pred ccc-cHHHHHHHHHHHHHHCCCCEEEecCcCCCCchhh--ccHHHHHh-hcC-CccchHHHhcCcccccHHHHHHHHHHc
Confidence 443 56677889999999999999999999 899854 11111110 011 1223445 44 788889999999
Q ss_pred CCCceecCCCCC
Q psy16535 155 KLVYFSTECIFA 166 (333)
Q Consensus 155 ~l~~~~D~~n~~ 166 (333)
|||+-.+.-+|+
T Consensus 165 gipv~~~~~~yS 176 (400)
T PRK04527 165 GFGVRAKQKAYT 176 (400)
T ss_pred CCCCCCCCCCcc
Confidence 999865554454
No 58
>PRK08576 hypothetical protein; Provisional
Probab=96.74 E-value=0.0093 Score=60.24 Aligned_cols=105 Identities=10% Similarity=0.156 Sum_probs=68.0
Q ss_pred cHHHHHHHHHHh-hchhcccccchhhh----cC-CCccchhhhhHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHH
Q psy16535 52 DIAETVLMNVLR-GDIARLQRCTDIIT----IG-RKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVL 125 (333)
Q Consensus 52 D~~Etfv~nl~r-g~i~~l~~~~~v~~----~~-~~~~~~~cr~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~ 125 (333)
+....++.++++ .+++......+... .+ ...+|..|...++..+.++++++|++++++||. +|+.. .+...
T Consensus 273 pet~e~~~~lae~LGI~lii~~v~~~~~~~~~g~p~~~~rcCt~lK~~pL~raake~g~~~iatG~R-~dES~--~R~~~ 349 (438)
T PRK08576 273 PLTDEYVEKVAEKLGVDLIRAGVDVPMPIEKYGMPTHSNRWCTKLKVEALEEAIRELEDGLLVVGDR-DGESA--RRRLR 349 (438)
T ss_pred hHHHHHHHHHHHHcCCCEEEcccCHHHHhhhcCCCCcccchhhHHHHHHHHHHHHhCCCCEEEEEee-HHHhH--HhhcC
Confidence 456778899998 77776552222111 11 123577799999999999999999999999996 55433 22211
Q ss_pred h---cCccccccCCcccc---ccCHHHHHHHHHHcCCCcee
Q psy16535 126 R---GDIARLQRCTDIIT---YAYEKEIVMYAYYKKLVYFS 160 (333)
Q Consensus 126 r---g~~~~L~~~~~iiR---~i~k~EI~~y~~~~~l~~~~ 160 (333)
- .+..+. +....++ .++++||..|+..+|||+..
T Consensus 350 p~v~~~~~~~-~~v~rI~PL~~Wte~DV~~YI~~~gLP~np 389 (438)
T PRK08576 350 PPVVERKTNF-GKILVVMPIKFWSGAMVQLYILMNGLELNP 389 (438)
T ss_pred CcccccccCC-CCeEEEeChhhCCHHHHHHHHHHhCCCCCc
Confidence 0 000000 0111233 89999999999999999744
No 59
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=96.68 E-value=0.0052 Score=61.06 Aligned_cols=75 Identities=19% Similarity=0.297 Sum_probs=56.0
Q ss_pred CchHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhhhcCCCccchhhhhHHH
Q psy16535 14 RKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIITIGRKNNCTFCGVFRR 92 (333)
Q Consensus 14 ~~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~~~~~~~~~~cr~~Rr 92 (333)
....|..|+++++..+.+++++.|+++|++||+++ +.+.+.++|+.. ..-..+. ..+|... +..
T Consensus 261 ~~~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslg---qvaSQtl~Nl~~i~~~~~lp--------ilRPLi~----~dK 325 (381)
T PRK08384 261 ENYTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLG---QVASQTLENMYIVSQASDLP--------IYRPLIG----MDK 325 (381)
T ss_pred CCCchHHHHHHHHHHHHHHHHHcCCCEEEEcccch---hHHHHHHHHHHHHhccCCCc--------EEeeCCC----CCH
Confidence 34589999999999999999999999999999999 688888888754 2111110 1122221 456
Q ss_pred HHHHHHhHhcc
Q psy16535 93 QALDRGAAMLG 103 (333)
Q Consensus 93 ~~l~~~a~~~g 103 (333)
..+.++|++.|
T Consensus 326 ~EIi~~Ar~iG 336 (381)
T PRK08384 326 EEIVAIAKTIG 336 (381)
T ss_pred HHHHHHHHHcC
Confidence 78889999988
No 60
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=96.59 E-value=0.0015 Score=50.34 Aligned_cols=35 Identities=40% Similarity=0.385 Sum_probs=33.1
Q ss_pred HHHHHHHHHhHhccccEEEcccCCcchHHHHHHHH
Q psy16535 90 FRRQALDRGAAMLGVDCVATGHNADDIAETVLMNV 124 (333)
Q Consensus 90 ~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl 124 (333)
.|++.+.+++++.|+++|++|||.+|++|+.+.++
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~ 69 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRLGAS 69 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCch
Confidence 78999999999999999999999999999999864
No 61
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=96.59 E-value=0.0024 Score=61.30 Aligned_cols=85 Identities=13% Similarity=0.096 Sum_probs=59.7
Q ss_pred chHhhHHHHHHHHHHHHHHHhcC-CCEEEeccCCCCCCcHHHHHHHHHHhhchhccc---ccchhhhcCCCccchhhhhH
Q psy16535 15 KNNCTFCGVFRRQALDRGAAMLG-VDCVATGHNADDTDDIAETVLMNVLRGDIARLQ---RCTDIITIGRKNNCTFCGVF 90 (333)
Q Consensus 15 ~~~~~~~~~~r~~~L~~~~~~~g-~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~---~~~~v~~~~~~~~~~~cr~~ 90 (333)
..-|..|+..++..|.+.++++| +++|++|||.| |..|++.++.....+..+. +...........|.. .+
T Consensus 77 e~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~d---D~~Es~~~~~~~~~IKs~~n~~Gl~a~~~~~vi~PL~---~l 150 (295)
T cd01997 77 EEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYP---DVIESGSGKGSADTIKSHHNVGGLPEDMKLKLIEPLR---DL 150 (295)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCccc---chhhhcccccccccccccccccccchHhhCCcccccc---cC
Confidence 44688999999999999999999 99999999999 8999887554322232222 221111122112221 27
Q ss_pred HHHHHHHHhHhcccc
Q psy16535 91 RRQALDRGAAMLGVD 105 (333)
Q Consensus 91 Rr~~l~~~a~~~g~~ 105 (333)
....+.++++++|+.
T Consensus 151 ~K~EVR~lar~lGLp 165 (295)
T cd01997 151 FKDEVRELGRELGLP 165 (295)
T ss_pred cHHHHHHHHHHcCCC
Confidence 789999999999986
No 62
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=96.55 E-value=0.01 Score=50.66 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=51.2
Q ss_pred EEeccCCCCCCcHHHHHHHHHHhhchhcccccch---hh-----hc--CCCccchhhhhHHHHHHHHHhHhccccEEEcc
Q psy16535 41 VATGHNADDTDDIAETVLMNVLRGDIARLQRCTD---II-----TI--GRKNNCTFCGVFRRQALDRGAAMLGVDCVATG 110 (333)
Q Consensus 41 Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~---v~-----~~--~~~~~~~~cr~~Rr~~l~~~a~~~g~~~ia~a 110 (333)
+.++|.... +.+...+.++|+.+++......+ .. .. ....||..|+.+|+..+.++|++.|++.|++|
T Consensus 32 v~~~~g~~~--~~~~~~~~~~a~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~A~~~g~~~il~G 109 (154)
T cd01996 32 VTVDNGFNS--EEAVKNIKNLIKKGLDLDHLVINPEEMKDLQLARFKAKVGDPCWPCDTAIFTSLYKVALKFGIPLIITG 109 (154)
T ss_pred EEeCCCCCC--HHHHHHHHHHHHhCCCeEEEecCHHHHHHHHHHHHhcccCCCChhhhHHHHHHHHHHHHHhCcCEEEeC
Confidence 445666552 55667888888853332211111 11 10 13458999999999999999999999999999
Q ss_pred cCCcch
Q psy16535 111 HNADDI 116 (333)
Q Consensus 111 H~~dD~ 116 (333)
||+|+.
T Consensus 110 ~~~de~ 115 (154)
T cd01996 110 ENPAQE 115 (154)
T ss_pred cCHHHh
Confidence 999984
No 63
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=96.41 E-value=0.0078 Score=48.21 Aligned_cols=45 Identities=27% Similarity=0.257 Sum_probs=40.3
Q ss_pred hHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHh
Q psy16535 16 NNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLR 63 (333)
Q Consensus 16 ~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~r 63 (333)
.....|...||..+.+++++.|+++|++|||.+ |..|++.++...
T Consensus 40 ~~~~~~~~~r~~~~~~~a~~~g~~~i~~g~~~~---D~~~~~~~~~~~ 84 (103)
T cd01986 40 DAKEIAKEAREEAAKRIAKEKGAETIATGTRRD---DVANRALGLTAL 84 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcc---hHHHHHHHHHHH
Confidence 355666779999999999999999999999999 899999999883
No 64
>PRK00074 guaA GMP synthase; Reviewed
Probab=96.35 E-value=0.004 Score=64.19 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=59.1
Q ss_pred chHhhHHHHHHHHHHHHHHHhc-CCCEEEeccCCCCCCcHHHHHHHHHHh-hchhc---ccccchhhhcCCCccchhhhh
Q psy16535 15 KNNCTFCGVFRRQALDRGAAML-GVDCVATGHNADDTDDIAETVLMNVLR-GDIAR---LQRCTDIITIGRKNNCTFCGV 89 (333)
Q Consensus 15 ~~~~~~~~~~r~~~L~~~~~~~-g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~---l~~~~~v~~~~~~~~~~~cr~ 89 (333)
...|..|+..+|.+|.+++++. |+++|++|||+| |.+|++.++ . ..+.. +.+...........|. +.
T Consensus 293 ~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~d---D~~Et~~~~--~~~~ik~~~~l~Gl~~~~~~~ii~PL---~~ 364 (511)
T PRK00074 293 EEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYP---DVIESGGTK--KAATIKSHHNVGGLPEDMKLKLVEPL---RE 364 (511)
T ss_pred HHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCcc---hhhhhcCCC--CccccccccCccCcChhHhcccccch---hh
Confidence 3368899999999999999999 999999999999 899998776 4 33321 1222221111221122 12
Q ss_pred HHHHHHHHHhHhcccc
Q psy16535 90 FRRQALDRGAAMLGVD 105 (333)
Q Consensus 90 ~Rr~~l~~~a~~~g~~ 105 (333)
+.++.+.++|+++|+.
T Consensus 365 l~K~EIr~~a~~~gLp 380 (511)
T PRK00074 365 LFKDEVRKLGLELGLP 380 (511)
T ss_pred cCHHHHHHHHHHcCCC
Confidence 6789999999999987
No 65
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=96.28 E-value=0.018 Score=52.11 Aligned_cols=128 Identities=18% Similarity=0.195 Sum_probs=66.9
Q ss_pred HHhcCCCEEEeccCC----CC-CCcHHHHHHHHHHhhc----hhcc-cccchhh----hc-CCCccchhhhhHHHHHHHH
Q psy16535 33 AAMLGVDCVATGHNA----DD-TDDIAETVLMNVLRGD----IARL-QRCTDII----TI-GRKNNCTFCGVFRRQALDR 97 (333)
Q Consensus 33 ~~~~g~~~Ia~~H~l----d~-~~D~~Etfv~nl~rg~----i~~l-~~~~~v~----~~-~~~~~~~~cr~~Rr~~l~~ 97 (333)
..+.|+.+++++.+. ++ ..+.++.....+..+. ++.+ ....++. .. ...++|-.|+.+=+..-.+
T Consensus 23 m~krG~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~i~~~~~~~~~ci~ckr~M~r~A~~ 102 (197)
T PF02568_consen 23 MMKRGCEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDFTEVQKEILRGVKERNPCIDCKRFMYRIAEE 102 (197)
T ss_dssp HHCBT-EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECHHHHHHHHHHHS-GGGHHHHHHHHHHHHHHH
T ss_pred HHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECcHHHHHHHHhcCCccchhHHHHHHHHHHHHH
Confidence 445699999987542 11 1223444444444422 2221 1112221 11 2246899999888888999
Q ss_pred HhHhccccEEEcccCCcchHHHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcCC------CceecCCCC
Q psy16535 98 GAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKKL------VYFSTECIF 165 (333)
Q Consensus 98 ~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~l------~~~~D~~n~ 165 (333)
+|++.|++.|+||..+-..+.+-+-|+.-=+. .. ..+++| .+.|+||.+.|++.|. |+ |.|+.
T Consensus 103 ia~~~ga~~IvTGEsLGQvaSQTl~nL~~i~~--~~-~~pIlRPLig~dK~EIi~~Ar~Igtye~S~~~~--~~C~~ 174 (197)
T PF02568_consen 103 IAEEEGADAIVTGESLGQVASQTLENLRVIES--AS-DLPILRPLIGFDKEEIIEIARKIGTYEISIRPY--DCCSL 174 (197)
T ss_dssp HHHHTT--EEE----SSSTTS--HHHHHHHGG--G---S-EE-TTTT--HHHHHHHHHHTT-HHHHTS---------
T ss_pred HHHHCCCCEEEeCchhHHHHhhhHHHHhhhhc--cc-CCceeCCcCCCCHHHHHHHHHHhCchhhhcCCC--Cccee
Confidence 99999999999999999987777777654321 11 347888 7899999999999984 23 77874
No 66
>PRK13820 argininosuccinate synthase; Provisional
Probab=96.26 E-value=0.0084 Score=59.81 Aligned_cols=78 Identities=15% Similarity=0.124 Sum_probs=55.6
Q ss_pred hHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHH--HHHHHHHHhhchhcccccchhhhcCCCccchhhhhHHHH
Q psy16535 16 NNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIA--ETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQ 93 (333)
Q Consensus 16 ~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~--Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~ 93 (333)
..|+.||.+++.+|.+++++.|+++||.||+.+. .|+. |+.+..+ .+ ....+.... .+.|+
T Consensus 88 l~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~g-nDq~rfe~~~~a~---~l---~viaP~re~----------~ltK~ 150 (394)
T PRK13820 88 LGTALARPLIAEKIVEVAEKEGASAIAHGCTGKG-NDQLRFEAVFRAS---DL---EVIAPIREL----------NLTRE 150 (394)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCc-chHHHHHHhhHhh---cC---eeeCchhcc----------CCCHH
Confidence 4678999999999999999999999999995541 2676 6664444 22 122222211 13578
Q ss_pred HHHHHhHhccccEEEcc
Q psy16535 94 ALDRGAAMLGVDCVATG 110 (333)
Q Consensus 94 ~l~~~a~~~g~~~ia~a 110 (333)
.+.++|+++|+.+-.+.
T Consensus 151 ei~~ya~~~gip~~~~~ 167 (394)
T PRK13820 151 WEIEYAKEKGIPVPVGK 167 (394)
T ss_pred HHHHHHHHcCCCCCcCC
Confidence 99999999999875554
No 67
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=96.16 E-value=0.0063 Score=54.52 Aligned_cols=80 Identities=25% Similarity=0.318 Sum_probs=54.8
Q ss_pred chHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhHHHHH
Q psy16535 15 KNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQA 94 (333)
Q Consensus 15 ~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~ 94 (333)
...|..|+..++.++.+++++.|+++|++|||.+ |+.+. + +++....++. ..+ |..-+ .+.+..
T Consensus 73 ~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~d---D~~e~------~---~~~~~~~~~~--iir-PL~~~-~~~K~e 136 (202)
T cd01990 73 PDRCYLCKKALYEALKEIAEELGLDVVLDGTNAD---DLGDY------R---PGLKALRELG--VRS-PLAEA-GLGKAE 136 (202)
T ss_pred CCccchhHHHHHHHHHHHHHHCCCCEEEEcCccc---cCccc------C---hHHHHHHHcC--CcC-chhhc-CCCHHH
Confidence 4579999999999999999999999999999998 55542 1 1111111110 112 22100 256899
Q ss_pred HHHHhHhccccEEEcc
Q psy16535 95 LDRGAAMLGVDCVATG 110 (333)
Q Consensus 95 l~~~a~~~g~~~ia~a 110 (333)
+.++|++.|+.++...
T Consensus 137 i~~~a~~~gl~~~~~~ 152 (202)
T cd01990 137 IRELARELGLPTWDKP 152 (202)
T ss_pred HHHHHHHcCCCCcCCC
Confidence 9999999999874443
No 68
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=96.13 E-value=0.0024 Score=62.69 Aligned_cols=84 Identities=24% Similarity=0.175 Sum_probs=57.1
Q ss_pred chHhhHHHH-HHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHH-HHHHHHhhc-----hhc-ccccchhh-hcCCCccch
Q psy16535 15 KNNCTFCGV-FRRQALDRGAAMLGVDCVATGHNADDTDDIAET-VLMNVLRGD-----IAR-LQRCTDII-TIGRKNNCT 85 (333)
Q Consensus 15 ~~~~~~~~~-~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Et-fv~nl~rg~-----i~~-l~~~~~v~-~~~~~~~~~ 85 (333)
.++|..|.+ +|+.+|.+++++.|+++||+||+.+ |..++ ..+.+++|. ..+ +.+..... .....|..
T Consensus 90 pnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~---d~~~~~~~~~l~rg~d~~kdqsy~L~~~~~~~l~~ii~PL~- 165 (349)
T cd01998 90 PNPDILCNKEIKFGALLDYAKKLGADYIATGHYAR---IEEDNNGRYRLLRGVDPNKDQSYFLSQLSQEQLSRLIFPLG- 165 (349)
T ss_pred CCchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCC---eeecCCCceEEeecCCCCCCcceEeccCCHHHHhheeecCC-
Confidence 568999999 5899999999999999999999999 66666 555555532 111 12221100 01112222
Q ss_pred hhhhHHHHHHHHHhHhcccc
Q psy16535 86 FCGVFRRQALDRGAAMLGVD 105 (333)
Q Consensus 86 ~cr~~Rr~~l~~~a~~~g~~ 105 (333)
.+....+.++|++.|+.
T Consensus 166 ---~~~K~eVr~~A~~~gl~ 182 (349)
T cd01998 166 ---DLTKPEVREIAKELGLP 182 (349)
T ss_pred ---CCCHHHHHHHHHHcCCC
Confidence 25788899999999986
No 69
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=95.90 E-value=0.053 Score=50.37 Aligned_cols=120 Identities=11% Similarity=-0.006 Sum_probs=73.4
Q ss_pred HHHHHhcC--CCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchh------hhc---CC---CccchhhhhHHHHH
Q psy16535 30 DRGAAMLG--VDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDI------ITI---GR---KNNCTFCGVFRRQA 94 (333)
Q Consensus 30 ~~~~~~~g--~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v------~~~---~~---~~~~~~cr~~Rr~~ 94 (333)
..++.+.+ +.++.++.+.. -.+-..|+..++. .+++......+. ... .. +.+|..|..++..-
T Consensus 57 L~L~~~~~~~i~vvfiDTG~~--~pet~e~~~~~~~~~gl~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~K~~p 134 (241)
T PRK02090 57 LHLVAQVDPDIPVIFLDTGYL--FPETYRFIDELTERLLLNLKVYRPDASAAEQEARYGGLWEQSVEDRDECCRIRKVEP 134 (241)
T ss_pred HHHHHhcCCCCcEEEecCCCC--CHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHcCCCccccccCHHHHHHHHhhHH
Confidence 34444443 45555555443 2466678888887 655433221110 001 11 35688899999999
Q ss_pred HHHHhHhccccEEEcccCCcchHHHHHHHHHhcCccccccCCcccc-----ccCHHHHHHHHHHcCCCcee
Q psy16535 95 LDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT-----YAYEKEIVMYAYYKKLVYFS 160 (333)
Q Consensus 95 l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR-----~i~k~EI~~y~~~~~l~~~~ 160 (333)
|.+++++.++ +++||..|+- ..+.. ...+.....++| .++++||..|+..+|||+..
T Consensus 135 l~~~~~~~~~--~itG~R~~es---~~R~~----~~~~~~~~~~~rv~Pi~~Wt~~dV~~Yi~~~~lp~~p 196 (241)
T PRK02090 135 LNRALAGLDA--WITGLRREQS---GTRAN----LPVLEIDGGRFKINPLADWTNEDVWAYLKEHDLPYHP 196 (241)
T ss_pred HHHHHhcCCC--eEEEechhhC---chhcc----CceeeecCCeEEEeehhhCCHHHHHHHHHHcCCCCCh
Confidence 9999999887 7899998873 22221 111111112222 89999999999999999843
No 70
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=95.89 E-value=0.0047 Score=60.91 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=31.8
Q ss_pred chHhhHHHH-HHHHHHHHHHHhcCCCEEEeccCCC
Q psy16535 15 KNNCTFCGV-FRRQALDRGAAMLGVDCVATGHNAD 48 (333)
Q Consensus 15 ~~~~~~~~~-~r~~~L~~~~~~~g~~~Ia~~H~ld 48 (333)
.++|..|++ +|+.+|.+++++.|+++|++||+.+
T Consensus 90 pnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~ 124 (360)
T PRK14665 90 PVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVR 124 (360)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 579999999 7789999999999999999999997
No 71
>PRK14561 hypothetical protein; Provisional
Probab=95.44 E-value=0.016 Score=52.21 Aligned_cols=98 Identities=19% Similarity=0.122 Sum_probs=62.2
Q ss_pred chHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhHHHHH
Q psy16535 15 KNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQA 94 (333)
Q Consensus 15 ~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~ 94 (333)
+.+|..|..+++.+|...+ .|+++|++|||.| |..||+.++..++- ....+ +. -.+|.. .+.+..
T Consensus 74 ~~P~~~~~~l~~~~l~~~a--~g~~~Ia~G~n~D---D~~et~~r~~~~a~-~~~~g---i~--iirPL~----~~~K~e 138 (194)
T PRK14561 74 GYPNNAIQYVHEHALEALA--EEYDVIADGTRRD---DRVPKLSRSEIQSL-EDRKG---VQ--YIRPLL----GFGRKT 138 (194)
T ss_pred CCCCchhHHHHHHHHHHHH--cCCCEEEEEecCC---CcchhccHHHHhhh-hcCCC---cE--EEeeCC----CCCHHH
Confidence 4578888899999999988 8999999999999 89999999987721 11111 10 011211 245677
Q ss_pred HHHHhHhccccEEEcccC---CcchHHHHHHHHHhcCc
Q psy16535 95 LDRGAAMLGVDCVATGHN---ADDIAETVLMNVLRGDI 129 (333)
Q Consensus 95 l~~~a~~~g~~~ia~aH~---~dD~~ET~l~nl~rg~~ 129 (333)
+.++++++ =-|..|-+ .+--.||=++.+++-.+
T Consensus 139 I~~la~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
T PRK14561 139 IDRLVERL--FEIEEGESEEIPKSDYETELRELLRERG 174 (194)
T ss_pred HHHHHHhh--EEEEeccCCCcCccchHHHHHHHHHHhC
Confidence 77777763 12222221 22234777777776544
No 72
>PRK00919 GMP synthase subunit B; Validated
Probab=95.34 E-value=0.037 Score=53.51 Aligned_cols=79 Identities=15% Similarity=0.181 Sum_probs=54.7
Q ss_pred chHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhccc---ccchhhhcCCCccchhhhhHH
Q psy16535 15 KNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQ---RCTDIITIGRKNNCTFCGVFR 91 (333)
Q Consensus 15 ~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~---~~~~v~~~~~~~~~~~cr~~R 91 (333)
..-|..|++.++..+.+++++.|+++|+.|||.+ |..|+ ++++..+. +...........|. +.+.
T Consensus 97 e~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~d---D~iE~------r~~iks~~nv~gl~~~~~~~Ii~PL---~~l~ 164 (307)
T PRK00919 97 EEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAP---DWIES------EGGIKSHHNVGGLPEGMVLKIVEPL---RDLY 164 (307)
T ss_pred HHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCc---chhhc------cCcccccccccccChhhcCCcccCc---hhCc
Confidence 4468999999999999999999999999999999 77766 23322111 11111111111222 2267
Q ss_pred HHHHHHHhHhcccc
Q psy16535 92 RQALDRGAAMLGVD 105 (333)
Q Consensus 92 r~~l~~~a~~~g~~ 105 (333)
+..+.++++++|+.
T Consensus 165 K~EVr~la~~lGLp 178 (307)
T PRK00919 165 KDEVREVARALGLP 178 (307)
T ss_pred HHHHHHHHHHcCCC
Confidence 89999999999986
No 73
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=95.23 E-value=0.0042 Score=61.27 Aligned_cols=36 Identities=33% Similarity=0.512 Sum_probs=32.4
Q ss_pred CchHhhHHHH-HHHHHHHHHHHhcCCCEEEeccCCCC
Q psy16535 14 RKNNCTFCGV-FRRQALDRGAAMLGVDCVATGHNADD 49 (333)
Q Consensus 14 ~~~~~~~~~~-~r~~~L~~~~~~~g~~~Ia~~H~ld~ 49 (333)
..++|+.|.. +|+.+|.+++++.|+++||+||+.+.
T Consensus 84 tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~ 120 (362)
T PRK14664 84 TPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRL 120 (362)
T ss_pred CCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCcccc
Confidence 3579999996 58999999999999999999999973
No 74
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=95.19 E-value=0.022 Score=56.32 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=55.1
Q ss_pred chHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhHHHHH
Q psy16535 15 KNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQA 94 (333)
Q Consensus 15 ~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~ 94 (333)
...|..||+++|.++..++++.|++.|++|||++ |.++++++|+.--. . ....++ .+|.. .+....
T Consensus 253 ~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~---d~asqtl~nl~~i~--~-~~~~~I----~rPLi----~~~K~E 318 (371)
T TIGR00342 253 GYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLG---QVASQTLENLRVIQ--A-VSNTPI----LRPLI----GMDKEE 318 (371)
T ss_pred CceeHhHHHHHHHHHHHHHHHcCCCEEEEccChH---hhhccHHHHHHHHh--c-cCCCCE----EeCCC----CCCHHH
Confidence 4579999999999999999999999999999999 77877888864311 0 000011 12221 256788
Q ss_pred HHHHhHhccc
Q psy16535 95 LDRGAAMLGV 104 (333)
Q Consensus 95 l~~~a~~~g~ 104 (333)
+.++|++.|.
T Consensus 319 Ii~~a~~iG~ 328 (371)
T TIGR00342 319 IIELAKEIGT 328 (371)
T ss_pred HHHHHHHhCC
Confidence 8999999884
No 75
>PF10288 DUF2392: Protein of unknown function (DUF2392); InterPro: IPR019407 Cytoplasmic thiouridylase is a highly conserved complex responsible for the 2-thiolation of cytosolic tRNAs []. Inactivation of this complex leads to a loss of thiolation on tRNAs, decreased viability and aberrant cell development. This entry represents the second subunit of this complex.
Probab=95.10 E-value=0.099 Score=42.56 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCccccc--------c--C-Ccccc---ccCHHHHHHHHHHcCCCceecC---------CCCCCchhHHH
Q psy16535 117 AETVLMNVLRGDIARLQ--------R--C-TDIIT---YAYEKEIVMYAYYKKLVYFSTE---------CIFAPNAYRGH 173 (333)
Q Consensus 117 ~ET~l~nl~rg~~~~L~--------~--~-~~iiR---~i~k~EI~~y~~~~~l~~~~D~---------~n~~~~~~Rn~ 173 (333)
|..+|.+...|.|..+. + . -.++| ++..+||..|+...+++...-+ -......+..-
T Consensus 2 A~~~Ls~~~kGRG~sl~~~~~~~~~~~~~~i~~~rPLRd~l~kEi~~Y~~~~~l~~~~~~~~~~~~~~~~~~~~~SI~~L 81 (107)
T PF10288_consen 2 AIKTLSNVAKGRGFSLPWQVSDGDSRNGWDIKIIRPLRDLLKKEIAFYNRLCGLESVLVPSLDTDSSQSKSSKNMSINEL 81 (107)
T ss_pred HHHHHHHHHcCCceecchHHhCCcccCCCCceEEeehHhCCHHHHHHHHHHhCcchhhcccccccccccccCcCCCHHHH
Confidence 56778888888875432 1 1 12444 9999999999999999832211 11224456666
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Q psy16535 174 ARTFLKHLEKIRPASIMDIIHSGEQM 199 (333)
Q Consensus 174 iR~~lp~l~~~~p~~~~~l~~~~~~~ 199 (333)
+++++..|++.+|++..+++|++.++
T Consensus 82 ~~~fi~~Le~~ypstvsTV~RT~~KL 107 (107)
T PF10288_consen 82 TEDFIDNLEENYPSTVSTVVRTADKL 107 (107)
T ss_pred HHHHHHHHhCcCcchHhHHHHHhhcC
Confidence 67799999989999999999998754
No 76
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=95.08 E-value=0.086 Score=51.60 Aligned_cols=82 Identities=10% Similarity=-0.038 Sum_probs=60.1
Q ss_pred HHHHhcCCCEEE--eccCCCCCCcHHHHHHHHHHh-hchhcccccchhhh--------c-CCCccchhhhhHHHHHHHHH
Q psy16535 31 RGAAMLGVDCVA--TGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIIT--------I-GRKNNCTFCGVFRRQALDRG 98 (333)
Q Consensus 31 ~~~~~~g~~~Ia--~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~--------~-~~~~~~~~cr~~Rr~~l~~~ 98 (333)
-+.+.+|.+.++ ++|+.. ++.+...+.++++ -+++.+.-..+... . ....||..|...++..+.++
T Consensus 78 ll~~~~gl~~l~vt~~~~~~--~e~~~~n~~~~~~~lgvd~~~i~~d~~~~~~l~~~~~~~~~~pc~~c~~~~~~~l~~~ 155 (343)
T TIGR03573 78 VLKKKLGLNPLLVTVDPGWN--TELGVKNLNNLIKKLGFDLHTITINPETFRKLQRAYFKKVGDPEWPQDHAIFASVYQV 155 (343)
T ss_pred HHHHHhCCceEEEEECCCCC--CHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHhccCCCchhhhhHHHHHHHHH
Confidence 334667887654 456665 3678889999999 77775443322111 0 12358999999999999999
Q ss_pred hHhccccEEEcccCCc
Q psy16535 99 AAMLGVDCVATGHNAD 114 (333)
Q Consensus 99 a~~~g~~~ia~aH~~d 114 (333)
|+++|+++|++|||.|
T Consensus 156 A~~~gi~~Il~G~~~d 171 (343)
T TIGR03573 156 ALKFNIPLIIWGENIA 171 (343)
T ss_pred HHHhCCCEEEeCCCHH
Confidence 9999999999999999
No 77
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=95.04 E-value=0.0058 Score=60.11 Aligned_cols=88 Identities=22% Similarity=0.159 Sum_probs=52.2
Q ss_pred chHhhHHHHH-HHHHHHHHHHhc-CCCEEEeccCCCCCCcHHHHHHHHHHhhch---hcccccch-hhhcCCCccchhhh
Q psy16535 15 KNNCTFCGVF-RRQALDRGAAML-GVDCVATGHNADDTDDIAETVLMNVLRGDI---ARLQRCTD-IITIGRKNNCTFCG 88 (333)
Q Consensus 15 ~~~~~~~~~~-r~~~L~~~~~~~-g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i---~~l~~~~~-v~~~~~~~~~~~cr 88 (333)
.++|..|.+. |+.+|.+.+++. |+++||+||+++...|.....+++-..+.- -++..... .......|..
T Consensus 93 pnpC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya~~~~d~~~~~l~~~~d~~kDqsy~L~~l~~~~l~~~i~PL~---- 168 (352)
T TIGR00420 93 PNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIEGKSLLLRALDKNKDQSYFLYHLSHEQLAKLLFPLG---- 168 (352)
T ss_pred CCcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcceEeCCCCcEEEEEccCCCcCcceecccCCHHHhhhhcccCC----
Confidence 5799999885 579999999986 999999999996322322222222222111 11222111 0001112222
Q ss_pred hHHHHHHHHHhHhccccE
Q psy16535 89 VFRRQALDRGAAMLGVDC 106 (333)
Q Consensus 89 ~~Rr~~l~~~a~~~g~~~ 106 (333)
.+....+.++|+++|+.+
T Consensus 169 ~~~K~EVr~~A~~~gl~~ 186 (352)
T TIGR00420 169 ELLKPEVRQIAKNAGLPT 186 (352)
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 256888999999999863
No 78
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=94.81 E-value=0.15 Score=49.43 Aligned_cols=121 Identities=12% Similarity=0.035 Sum_probs=74.2
Q ss_pred CCCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchh-hhcCC----CccchhhhhHHHHHHHHHhHhccccEEEcc
Q psy16535 37 GVDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDI-ITIGR----KNNCTFCGVFRRQALDRGAAMLGVDCVATG 110 (333)
Q Consensus 37 g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v-~~~~~----~~~~~~cr~~Rr~~l~~~a~~~g~~~ia~a 110 (333)
.+.+++++.+..- .+--.|...+++ .+++..+...+. ...+. ..++..|+..+..-|.+++.++|++.+++|
T Consensus 67 ~~pvl~VDTG~~F--pEt~efrD~~a~~~gl~Liv~~~~~~~~~G~~~~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG 144 (312)
T PRK12563 67 PFPLLHVDTTWKF--REMIDFRDRRAKELGLDLVVHHNPDGIARGIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGG 144 (312)
T ss_pred CeeEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEecChHHHHhCCCcccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEe
Confidence 3456665433321 255668888888 776654432211 11111 234555666677999999999999999999
Q ss_pred cCCcchHHHHHHHHHh-------cCc----ccccc-------CCcccc-----ccCHHHHHHHHHHcCCCce
Q psy16535 111 HNADDIAETVLMNVLR-------GDI----ARLQR-------CTDIIT-----YAYEKEIVMYAYYKKLVYF 159 (333)
Q Consensus 111 H~~dD~~ET~l~nl~r-------g~~----~~L~~-------~~~iiR-----~i~k~EI~~y~~~~~l~~~ 159 (333)
+..|+.....-++++- ++. +.|.. .+..+| .+|+.+|-.|+..++||+.
T Consensus 145 ~RRdE~~sRak~~ifs~r~~~~~wD~~~qrPelw~~~n~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~ 216 (312)
T PRK12563 145 ARRDEEKSRAKERIFSFRSAFHRWDPKAQRPELWSLYNARLRRGESLRVFPLSNWTELDVWQYIAREKIPLV 216 (312)
T ss_pred cCHHHhhhhccCceecccccccccCccccChhhhhhccccccCCceEEEecchhCCHHHHHHHHHHcCCCCC
Confidence 9999965443333221 110 00110 122444 8999999999999999984
No 79
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=94.69 E-value=0.074 Score=49.51 Aligned_cols=107 Identities=14% Similarity=0.007 Sum_probs=66.5
Q ss_pred cHHHHHHHHHHh-hchhcccccc-hhhh-----c----C----CCccchhhhhHHHHHHHHHhHhccccEEEcccCCcch
Q psy16535 52 DIAETVLMNVLR-GDIARLQRCT-DIIT-----I----G----RKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDI 116 (333)
Q Consensus 52 D~~Etfv~nl~r-g~i~~l~~~~-~v~~-----~----~----~~~~~~~cr~~Rr~~l~~~a~~~g~~~ia~aH~~dD~ 116 (333)
..+...+..++. -+++...... ++.. . . ....|.+|..+|+..+..+|+++|+.++.||| .
T Consensus 64 ~~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn----~ 139 (248)
T cd00553 64 EETREDAKELAEALGIEHVNIDIDPAVEAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGN----K 139 (248)
T ss_pred HHHHHHHHHHHHHhCCeEEEeccHHHHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc----H
Confidence 456677788887 5555432111 1100 0 0 11247788889999999999999998899887 4
Q ss_pred HHHHHHHHHhcCccccccCCccccccCHHHHHHHHHHcCCCce-ecCCC
Q psy16535 117 AETVLMNVLRGDIARLQRCTDIITYAYEKEIVMYAYYKKLVYF-STECI 164 (333)
Q Consensus 117 ~ET~l~nl~rg~~~~L~~~~~iiR~i~k~EI~~y~~~~~l~~~-~D~~n 164 (333)
+|+++...... |.+ .+...++..++|.||..+|+..|+|.. .+.+|
T Consensus 140 ~E~~~G~~t~~-gd~-~~~i~Pl~~l~K~eV~~la~~~~ip~~i~~k~p 186 (248)
T cd00553 140 SELLLGYFTKY-GDG-AADINPIGDLYKTQVRELARYLGVPESIIDKPP 186 (248)
T ss_pred hHHHhCCeecc-CCc-ccCccccCCCcHHHHHHHHHHHCchHHHhcCCC
Confidence 56665322110 000 111123349999999999999999964 45555
No 80
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=94.48 E-value=0.071 Score=51.62 Aligned_cols=82 Identities=15% Similarity=0.248 Sum_probs=55.3
Q ss_pred chHhhHHHHHHHHHHHHHHHhcC-CCEEEeccCCCCCCcHHHHHH--HHHHh--hchhcccccchhhhcCCCccchhhhh
Q psy16535 15 KNNCTFCGVFRRQALDRGAAMLG-VDCVATGHNADDTDDIAETVL--MNVLR--GDIARLQRCTDIITIGRKNNCTFCGV 89 (333)
Q Consensus 15 ~~~~~~~~~~r~~~L~~~~~~~g-~~~Ia~~H~ld~~~D~~Etfv--~nl~r--g~i~~l~~~~~v~~~~~~~~~~~cr~ 89 (333)
...|..|+..++..|.+++++.| ++.|++|||.| |..|++. .++.. .++.++. .........|. . .
T Consensus 94 ~~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~d---D~~Es~~G~~~~iks~~~~~gl~---~~~~~~ii~PL--~-~ 164 (311)
T TIGR00884 94 EEKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYP---DVIESAAGTAHVIKSHHNVGGLP---EDMKLKLVEPL--R-E 164 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCh---hhhhhccChhHhhhccCccccCC---hhhcCceEEEc--c-c
Confidence 34588999999999999999999 99999999999 8888874 11111 1111111 11111111122 1 2
Q ss_pred HHHHHHHHHhHhcccc
Q psy16535 90 FRRQALDRGAAMLGVD 105 (333)
Q Consensus 90 ~Rr~~l~~~a~~~g~~ 105 (333)
+.+..+.++++++|+.
T Consensus 165 l~K~EVr~la~~lgLp 180 (311)
T TIGR00884 165 LFKDEVRKLGKELGLP 180 (311)
T ss_pred CcHHHHHHHHHHcCCC
Confidence 7789999999999986
No 81
>PLN02347 GMP synthetase
Probab=93.92 E-value=0.14 Score=53.09 Aligned_cols=137 Identities=13% Similarity=0.105 Sum_probs=77.8
Q ss_pred HhhHHHHHHHHHHHHHHHh-cCCCEEE--eccCCCCCCcHHHHHHHHHHh-hchhcccccc-h--hhh-cCCCc---cch
Q psy16535 17 NCTFCGVFRRQALDRGAAM-LGVDCVA--TGHNADDTDDIAETVLMNVLR-GDIARLQRCT-D--IIT-IGRKN---NCT 85 (333)
Q Consensus 17 ~~~~~~~~r~~~L~~~~~~-~g~~~Ia--~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~-~--v~~-~~~~~---~~~ 85 (333)
.+.+.|-+--..+..++.+ .|-++++ +.+.+-.. .+.+..+..+++ -+++...... + ... .+..+ -|.
T Consensus 233 vvalSGGVDSsvla~l~~~alG~~v~av~id~g~~~~-~E~~~~~~~~a~~lgi~~~vvd~~e~fl~~l~~~~~pe~k~~ 311 (536)
T PLN02347 233 ICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRY-KEQERVMETFKRDLHLPVTCVDASERFLSKLKGVTDPEKKRK 311 (536)
T ss_pred EEEecCChhHHHHHHHHHHHhCCcEEEEEEeCCCCCh-hHHHHHHHHHHHHcCCcEEEEeCcHHHHhhCCCCCChHHhcc
Confidence 4445555555566666655 5655544 45554321 346677777876 5565432211 1 111 01112 455
Q ss_pred hhhhHHHHHHHHHhHh----ccc--cEEEcccCCcchHHHHHHHHHhcC----c---------cccc-----cCCccccc
Q psy16535 86 FCGVFRRQALDRGAAM----LGV--DCVATGHNADDIAETVLMNVLRGD----I---------ARLQ-----RCTDIITY 141 (333)
Q Consensus 86 ~cr~~Rr~~l~~~a~~----~g~--~~ia~aH~~dD~~ET~l~nl~rg~----~---------~~L~-----~~~~iiR~ 141 (333)
.|+..-...|.+.+++ +|. ++++.|++.+|..|+..+ .|. . .+|. ++..+++.
T Consensus 312 ~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~es~~r---~g~~~~~~~~ik~hhn~~~l~~~~~~~ii~PL~~ 388 (536)
T PLN02347 312 IIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVIESCPP---PGSGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKL 388 (536)
T ss_pred hhCchHHHHHHHHHHHHHHhhCCCCcEEccCCcccccccccCC---CCCccccccceeeecccccChHHHHCccccchhh
Confidence 5665444666666633 444 899999999999887211 121 0 1111 12233458
Q ss_pred cCHHHHHHHHHHcCCC
Q psy16535 142 AYEKEIVMYAYYKKLV 157 (333)
Q Consensus 142 i~k~EI~~y~~~~~l~ 157 (333)
++|+||++.+++.|+|
T Consensus 389 l~K~eVR~la~~lgl~ 404 (536)
T PLN02347 389 LFKDEVRKLGRLLGVP 404 (536)
T ss_pred CcHHHHHHHHHHcCCC
Confidence 9999999999999999
No 82
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=92.47 E-value=0.24 Score=49.40 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=50.6
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhHHHHHHH
Q psy16535 17 NCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQALD 96 (333)
Q Consensus 17 ~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~l~ 96 (333)
.|..|+++++..+..++++.|+.+|++||+++ |...+++.++.. +..... .++ .+ |.. .+....+.
T Consensus 259 ~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~---d~~sqt~~~l~~--i~~~~~-~~V----~r-PLi---g~~K~EI~ 324 (394)
T PRK01565 259 LMTLMRRFMMRIADKIAEKRGALAIVTGESLG---QVASQTLESMYA--INAVTN-LPV----LR-PLI---GMDKEEII 324 (394)
T ss_pred EEEeHHHHHHHHHHHHHHHcCCCEEEEccccc---cccHHHHHHHHH--HhhccC-cEE----EE-CCC---CCCHHHHH
Confidence 47899999999999999999999999999998 555566666641 110000 000 01 211 24577788
Q ss_pred HHhHhccc
Q psy16535 97 RGAAMLGV 104 (333)
Q Consensus 97 ~~a~~~g~ 104 (333)
++|++.|.
T Consensus 325 ~lAr~iG~ 332 (394)
T PRK01565 325 EIAKEIGT 332 (394)
T ss_pred HHHHHhCC
Confidence 88888884
No 83
>PRK05370 argininosuccinate synthase; Validated
Probab=91.96 E-value=2 Score=43.49 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=52.2
Q ss_pred chhhhhHHHHHHHHHhHhccccEEEcccC--CcchHHHHHHHHH-hcCccccccCCcccc--cc-----CHHHHHHHHHH
Q psy16535 84 CTFCGVFRRQALDRGAAMLGVDCVATGHN--ADDIAETVLMNVL-RGDIARLQRCTDIIT--YA-----YEKEIVMYAYY 153 (333)
Q Consensus 84 ~~~cr~~Rr~~l~~~a~~~g~~~ia~aH~--~dD~~ET~l~nl~-rg~~~~L~~~~~iiR--~i-----~k~EI~~y~~~ 153 (333)
-+++|-+-...+-++|++.|++.|+-|-+ -+||+ -+.+. +--.+.|. ...++| .+ +|+|..+||++
T Consensus 103 t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQv---RFE~~~~aL~P~l~-ViaPwRd~~~~~~f~sR~e~i~Ya~~ 178 (447)
T PRK05370 103 TPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIE---RFYRYGLLTNPELK-IYKPWLDQDFIDELGGRAEMSEFLIA 178 (447)
T ss_pred CcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCchH---HHHHHHHHhCCCCe-EecchhhhhcccccCCHHHHHHHHHH
Confidence 34566666788899999999999998886 67873 22222 11111221 223456 44 89999999999
Q ss_pred cCCCceec-CCCCC
Q psy16535 154 KKLVYFST-ECIFA 166 (333)
Q Consensus 154 ~~l~~~~D-~~n~~ 166 (333)
+|||+..+ ..||+
T Consensus 179 hGIpv~~~~~~~yS 192 (447)
T PRK05370 179 HGFDYKMSVEKAYS 192 (447)
T ss_pred cCCCCCccCCCCcc
Confidence 99997543 23454
No 84
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=91.78 E-value=0.14 Score=43.33 Aligned_cols=80 Identities=19% Similarity=0.163 Sum_probs=56.7
Q ss_pred CchHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhHHHH
Q psy16535 14 RKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQ 93 (333)
Q Consensus 14 ~~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~ 93 (333)
..+.|.-|+.+|+..+.+.+++.|..++++||+.| |..++..++...+ .....+. ....++. .++++
T Consensus 82 ~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~d---e~~~r~~~~~~~~----~~~~~~~-----~~~~Pl~-~w~~~ 148 (173)
T cd01713 82 SPDRRWCCRILKVEPLRRALKELGVVAWITGIRRD---ESARRALLPVVWT----DDGKGGI-----LKVNPLL-DWTYE 148 (173)
T ss_pred cccHHHhhccccchHHHHHHHhcCCeEEEEEeccc---cchhhhhCccccc----cCCCCCc-----EEEcchh-cCCHH
Confidence 35678889999999999999999999999999999 7888888776611 0000000 0011111 26778
Q ss_pred HHHHHhHhccccE
Q psy16535 94 ALDRGAAMLGVDC 106 (333)
Q Consensus 94 ~l~~~a~~~g~~~ 106 (333)
.+.++++++|+.+
T Consensus 149 di~~~~~~~~l~~ 161 (173)
T cd01713 149 DVWAYLARHGLPY 161 (173)
T ss_pred HHHHHHHHcCCCC
Confidence 8889999888754
No 85
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=91.62 E-value=0.16 Score=43.22 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=32.6
Q ss_pred CchHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCC
Q psy16535 14 RKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNAD 48 (333)
Q Consensus 14 ~~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld 48 (333)
...+|..|+..|+.++.+++++.|+++|++||+.+
T Consensus 79 ~~~p~~~~~~~~~~~~~~~A~~~g~~~il~G~~~d 113 (154)
T cd01996 79 VGDPCWPCDTAIFTSLYKVALKFGIPLIITGENPA 113 (154)
T ss_pred cCCCChhhhHHHHHHHHHHHHHhCcCEEEeCcCHH
Confidence 35689999999999999999999999999999987
No 86
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=91.39 E-value=0.44 Score=47.52 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=44.2
Q ss_pred chhhhhHHHHHHHHHhHhccccEEEcccCC--cchHHHHHHHHHhcCc-cccccCCcccc--ccCHHHHHHHHHHcCCCc
Q psy16535 84 CTFCGVFRRQALDRGAAMLGVDCVATGHNA--DDIAETVLMNVLRGDI-ARLQRCTDIIT--YAYEKEIVMYAYYKKLVY 158 (333)
Q Consensus 84 ~~~cr~~Rr~~l~~~a~~~g~~~ia~aH~~--dD~~ET~l~nl~rg~~-~~L~~~~~iiR--~i~k~EI~~y~~~~~l~~ 158 (333)
.+++|-+=-+.+-++|++.|+++|+-|-+. +||+ -+++.-.+. +.|+ ...++| .++|+|..+||+++|||+
T Consensus 86 tsl~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqv---RFe~~~~al~P~l~-viaP~Rd~~~~R~~~i~ya~~~gIpv 161 (388)
T PF00764_consen 86 TSLARPLIAKKLVEVAREEGADAVAHGCTGKGNDQV---RFELSIRALAPELK-VIAPWRDWEFSREEEIEYAKKHGIPV 161 (388)
T ss_dssp CCCHHHHHHHHHHHHHHHHT-SEEE----TTSSHHH---HHHHHHHHHSTTSE-EE-GGGHHHHHHHHHHHHHHHTT---
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEeccCCcCCCchh---HHHHHHHHhCcCCc-EecccchhhhhHHHHHHHHHHcCCCC
Confidence 455666666788899999999999988765 8874 222222111 1222 123566 778999999999999987
Q ss_pred eecC-CCC
Q psy16535 159 FSTE-CIF 165 (333)
Q Consensus 159 ~~D~-~n~ 165 (333)
.... .||
T Consensus 162 ~~~~~~~y 169 (388)
T PF00764_consen 162 PVTKKKPY 169 (388)
T ss_dssp -SS---SS
T ss_pred CCCCCCCC
Confidence 6542 444
No 87
>PRK13980 NAD synthetase; Provisional
Probab=91.37 E-value=1 Score=42.39 Aligned_cols=107 Identities=17% Similarity=-0.018 Sum_probs=66.5
Q ss_pred EEEeccCCCCCCcHHHHHHHHHHh-hchhccccc-chhhh-----c---CCCccchhhhhHHHHHHHHHhHhccccEEEc
Q psy16535 40 CVATGHNADDTDDIAETVLMNVLR-GDIARLQRC-TDIIT-----I---GRKNNCTFCGVFRRQALDRGAAMLGVDCVAT 109 (333)
Q Consensus 40 ~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~-~~v~~-----~---~~~~~~~~cr~~Rr~~l~~~a~~~g~~~ia~ 109 (333)
.+.+.|... +..+...+..+|+ -+++..... .++.. . .....|.+|.++|+..+..+|+++|...+.|
T Consensus 61 av~~~~~~~--~~~~~~~a~~la~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g~lvlgT 138 (265)
T PRK13980 61 ALLMPSSVS--PPEDLEDAELVAEDLGIEYKVIEITPIVDAFFSAIPDADRLRVGNIMARTRMVLLYDYANRENRLVLGT 138 (265)
T ss_pred EEEeeCCCC--CHHHHHHHHHHHHHhCCCeEEEECHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcCCEEEcC
Confidence 333445432 2567888889998 666643221 11111 0 1123578889999999999999999877777
Q ss_pred ccCCcchHHHHHHHHHhcCcc--c-cccCCccccccCHHHHHHHHHHcCCC
Q psy16535 110 GHNADDIAETVLMNVLRGDIA--R-LQRCTDIITYAYEKEIVMYAYYKKLV 157 (333)
Q Consensus 110 aH~~dD~~ET~l~nl~rg~~~--~-L~~~~~iiR~i~k~EI~~y~~~~~l~ 157 (333)
| |.+ |.++ |-+. | ......++..++|.||.+.|+..|+|
T Consensus 139 g-n~s---E~~~-----G~~t~~gD~~~~l~Pl~~l~K~eV~~la~~lgip 180 (265)
T PRK13980 139 G-NKS---ELLL-----GYFTKYGDGAVDLNPIGDLYKTQVRELARHLGVP 180 (265)
T ss_pred C-CHh---HHHh-----CCccCCCCcccCcccCCCCcHHHHHHHHHHHCch
Confidence 6 333 3322 2111 1 11111234599999999999999998
No 88
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=91.33 E-value=1.6 Score=43.46 Aligned_cols=129 Identities=15% Similarity=0.129 Sum_probs=85.1
Q ss_pred HHhcCCCEEEeccCCC-CCCcHHHHHHHHHH-h-h-----chhc-ccccchhhhc----CCC-ccchhhhhHHHHHHHHH
Q psy16535 33 AAMLGVDCVATGHNAD-DTDDIAETVLMNVL-R-G-----DIAR-LQRCTDIITI----GRK-NNCTFCGVFRRQALDRG 98 (333)
Q Consensus 33 ~~~~g~~~Ia~~H~ld-~~~D~~Etfv~nl~-r-g-----~i~~-l~~~~~v~~~----~~~-~~~~~cr~~Rr~~l~~~ 98 (333)
+-+.|+.+.+++-+.. ..++.+..-++.+. . . .+.. .....++... ... -.|.+||+.=|+.=.++
T Consensus 195 ~mkRG~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f~~v~~~i~~~~~~~y~~v~~rR~M~riA~~i 274 (383)
T COG0301 195 MMKRGVEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYVVPFTEVQEEILEKVPESYRCVLLKRMMYRIAEKL 274 (383)
T ss_pred HHhcCCEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEEEEchHHHHHHHHhhcCccceehHHHHHHHHHHHHH
Confidence 3456888888764333 23445444444444 2 1 1221 1233333322 222 37888888778888899
Q ss_pred hHhccccEEEcccCCcchHHHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcCC-----CceecCCC
Q psy16535 99 AAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKKL-----VYFSTECI 164 (333)
Q Consensus 99 a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~l-----~~~~D~~n 164 (333)
|++.|+..|+||-.+-..|-+.+-|+.-=+. ....|++| .+.|+||.+.|++-|- ...+|.|.
T Consensus 275 ae~~g~~aIvtGEsLGQVASQTl~nL~~i~~---~t~~pIlRPLI~~DK~eIi~~Ar~IgT~eiSi~p~e~cc~ 345 (383)
T COG0301 275 AEEFGAKAIVTGESLGQVASQTLENLRVIDS---VTNTPVLRPLIGLDKEEIIEIARRIGTYEISIEPPEDCCV 345 (383)
T ss_pred HHHhCCeEEEecCcchhhhHhHHHHHHHHHh---ccCCceeccccCCCHHHHHHHHHHhCChhhhccCCCCCcC
Confidence 9999999999999999999888888754211 01247888 8899999999999874 34578887
No 89
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=91.25 E-value=0.2 Score=38.30 Aligned_cols=35 Identities=40% Similarity=0.385 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHH
Q psy16535 24 FRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNV 61 (333)
Q Consensus 24 ~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl 61 (333)
.++..+.+++++.|+++|++|||.+ |..|+++.+.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~---d~~~~~~~~~ 69 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNAD---DVAGRRLGAS 69 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCch---hhhhhccCch
Confidence 7899999999999999999999999 8888888763
No 90
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=90.93 E-value=2.6 Score=39.06 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=52.0
Q ss_pred ccchhhhhHHHHHHHH-HhHhccccEEEcccCCcchH------HHHHHH---HHh-cCccccccCCccccccCHHHHHHH
Q psy16535 82 NNCTFCGVFRRQALDR-GAAMLGVDCVATGHNADDIA------ETVLMN---VLR-GDIARLQRCTDIITYAYEKEIVMY 150 (333)
Q Consensus 82 ~~~~~cr~~Rr~~l~~-~a~~~g~~~ia~aH~~dD~~------ET~l~n---l~r-g~~~~L~~~~~iiR~i~k~EI~~y 150 (333)
+.|.-||+.-+-.+.. +|...|++.|++|-|.+|.. ..|+.- +++ |+..++. +..++..++|.||.+.
T Consensus 93 ~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~~~YpDcr~~Fi~A~~~~~~~~~~~~i~-I~aPl~~lsK~eI~~l 171 (231)
T PRK11106 93 NTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVSLGMAKDIR-FETPLMWLNKAETWAL 171 (231)
T ss_pred CEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcCCCCCCCCHHHHHHHHHHHHhccCCCcE-EEecCCCCCHHHHHHH
Confidence 3566689888887877 89999999999999999942 223333 222 2111111 1111226999999999
Q ss_pred HHHcC-CCc
Q psy16535 151 AYYKK-LVY 158 (333)
Q Consensus 151 ~~~~~-l~~ 158 (333)
+.+.| +||
T Consensus 172 ~~~lg~v~~ 180 (231)
T PRK11106 172 ADYYGQLDL 180 (231)
T ss_pred HHHcCCccc
Confidence 99999 887
No 91
>KOG2805|consensus
Probab=90.38 E-value=0.2 Score=48.24 Aligned_cols=130 Identities=18% Similarity=0.091 Sum_probs=78.7
Q ss_pred HHHHhcCCCEEEec---------cCCCCCCcHHHHHHHHHHh-hchhcccccc------hhh-----hc--C-CCccchh
Q psy16535 31 RGAAMLGVDCVATG---------HNADDTDDIAETVLMNVLR-GDIARLQRCT------DII-----TI--G-RKNNCTF 86 (333)
Q Consensus 31 ~~~~~~g~~~Ia~~---------H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~------~v~-----~~--~-~~~~~~~ 86 (333)
.+.+..|.++..+- |...--++.|..-+.+.|+ -+||+..... +|- .+ + ..+|-..
T Consensus 23 ~Ll~~~g~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~kEYW~~Vfs~~L~~Y~~G~TPNPDI~ 102 (377)
T KOG2805|consen 23 RLLAARGYNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNFVKEYWNDVFSPFLEEYENGRTPNPDIL 102 (377)
T ss_pred HHHHhcCCCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEeeHHHHHHHHHHHHHHHHhcCCCCCCCcc
Confidence 34566678777752 1111125678889999999 7888754331 121 11 1 1346667
Q ss_pred hh-hHHHH-HHHHHhHhccccEEEcccCCcchHHHHHH---HHHhcCcc----c--cccCC--------ccccccCHHHH
Q psy16535 87 CG-VFRRQ-ALDRGAAMLGVDCVATGHNADDIAETVLM---NVLRGDIA----R--LQRCT--------DIITYAYEKEI 147 (333)
Q Consensus 87 cr-~~Rr~-~l~~~a~~~g~~~ia~aH~~dD~~ET~l~---nl~rg~~~----~--L~~~~--------~iiR~i~k~EI 147 (333)
|. .++.. ++....+.+|.+||+|||.+.-..|-..- +++.+... . |..+. .++..++|+|+
T Consensus 103 CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~~~~~~l~~~~d~~KDQt~FL~~in~~~L~r~lfPlg~~~K~eV 182 (377)
T KOG2805|consen 103 CNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDEDNAESHLLISKDMVKDQTYFLSTINQTQLKRLLFPLGCLTKSEV 182 (377)
T ss_pred ccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCcccCcceeEeecccccCCceeEeecccHHHHHhhhccCcccCHHHH
Confidence 77 47778 56666677899999999998765544331 12222110 0 11110 11228999999
Q ss_pred HHHHHHcCCCcee
Q psy16535 148 VMYAYYKKLVYFS 160 (333)
Q Consensus 148 ~~y~~~~~l~~~~ 160 (333)
...|++.|+|..+
T Consensus 183 k~lA~~~gf~~ae 195 (377)
T KOG2805|consen 183 KKLAKQAGFPNAE 195 (377)
T ss_pred HHHHHhcCCcccc
Confidence 9999999999544
No 92
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=90.03 E-value=0.23 Score=46.23 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=30.5
Q ss_pred hHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCC
Q psy16535 16 NNCTFCGVFRRQALDRGAAMLGVDCVATGHNAD 48 (333)
Q Consensus 16 ~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld 48 (333)
..|..|.++|+.+|..++++.|+.+|+++|+.+
T Consensus 107 ~~~n~car~R~~~L~~~A~~~g~~~laTgh~~E 139 (250)
T TIGR00552 107 AKGNLKARLRMAALYAIANKHNLLVLGTGNKSE 139 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHHH
Confidence 368999999999999999999999999999865
No 93
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=88.40 E-value=0.82 Score=42.99 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=57.9
Q ss_pred CCchHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhHHH
Q psy16535 13 GRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRR 92 (333)
Q Consensus 13 ~~~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~Rr 92 (333)
+..+.|++|.+..+..|...+.+.|+++|+=|-|.++ . .+.=|++ ....+.+.++|..-|+ +..
T Consensus 89 n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasD---l---------~~~RPG~---rA~kE~gi~sPl~e~g-itk 152 (269)
T COG1606 89 NPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASD---L---------FDYRPGL---RALKELGIRSPLAEFG-ITK 152 (269)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHH---h---------cCCCcch---hhHHhcCCCChHHHhC-CcH
Confidence 3456899999999999999999999999998888873 2 2222332 2233334455665555 567
Q ss_pred HHHHHHhHhccccEE
Q psy16535 93 QALDRGAAMLGVDCV 107 (333)
Q Consensus 93 ~~l~~~a~~~g~~~i 107 (333)
..+.++|+.+|+++.
T Consensus 153 ~eIre~a~~lgl~~~ 167 (269)
T COG1606 153 KEIREIAKSLGLPTW 167 (269)
T ss_pred HHHHHHHHHcCCCcc
Confidence 889999999999865
No 94
>PRK00509 argininosuccinate synthase; Provisional
Probab=87.34 E-value=1.7 Score=43.59 Aligned_cols=79 Identities=20% Similarity=0.125 Sum_probs=51.1
Q ss_pred chHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhH-HHH
Q psy16535 15 KNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVF-RRQ 93 (333)
Q Consensus 15 ~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~-Rr~ 93 (333)
-++|+.|+.+-...|.+++++.|+++|+.||+... .|+.. | +-++..+.+...+. .|..-. .+ .|.
T Consensus 87 pl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~kG-nDq~r-f-----~~g~~al~pel~Vi-----sPlre~-~~~tK~ 153 (399)
T PRK00509 87 PLGTALARPLIAKKLVEIARKEGADAVAHGCTGKG-NDQVR-F-----ELGIAALAPDLKVI-----APWREW-DLKSRE 153 (399)
T ss_pred CCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCcCC-CCHHH-H-----HHHHHHhCCCCeee-----cchhhc-CCCCHH
Confidence 45899999999999999999999999999999831 16642 2 21111111111111 111000 13 688
Q ss_pred HHHHHhHhccccE
Q psy16535 94 ALDRGAAMLGVDC 106 (333)
Q Consensus 94 ~l~~~a~~~g~~~ 106 (333)
...++|+++|+..
T Consensus 154 eir~~A~~~Gipv 166 (399)
T PRK00509 154 ELIAYAEEHGIPI 166 (399)
T ss_pred HHHHHHHHcCCCC
Confidence 9999999999974
No 95
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=85.89 E-value=1.6 Score=37.68 Aligned_cols=74 Identities=16% Similarity=0.115 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCCEEEeccCCCCC---CcHHHHHHHHHHh-hchhcccccchhhhcCCCccchhhhhHHHHHHHHHhH
Q psy16535 25 RRQALDRGAAMLGVDCVATGHNADDT---DDIAETVLMNVLR-GDIARLQRCTDIITIGRKNNCTFCGVFRRQALDRGAA 100 (333)
Q Consensus 25 r~~~L~~~~~~~g~~~Ia~~H~ld~~---~D~~Etfv~nl~r-g~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~l~~~a~ 100 (333)
.+.++..++++.|++.|++||+.++. .|.-++|+..+.. -.+..-.+.. ..+ |.. .+....+.++++
T Consensus 64 ~~~~l~~~a~~~g~~~i~~G~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~-PL~---~~~K~ei~~~~~ 134 (169)
T cd01995 64 FLSIAAAYAEALGAEAIIIGVNAEDYSGYPDCRPEFIEAMNKALNLGTENGIK-----IHA-PLI---DLSKAEIVRLGG 134 (169)
T ss_pred HHHHHHHHHHHCCCCEEEEeeccCccCCCCCCCHHHHHHHHHHHHhhcCCCeE-----EEe-Ccc---cCCHHHHHHHHh
Confidence 44678889999999999999999841 1123566655443 1111000000 001 111 145666777788
Q ss_pred hccccEE
Q psy16535 101 MLGVDCV 107 (333)
Q Consensus 101 ~~g~~~i 107 (333)
+.|+.+.
T Consensus 135 ~~g~~~~ 141 (169)
T cd01995 135 ELGVPLE 141 (169)
T ss_pred HcCCChh
Confidence 8887544
No 96
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=84.90 E-value=3 Score=41.75 Aligned_cols=80 Identities=16% Similarity=0.137 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhHHHHHHHH
Q psy16535 18 CTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQALDR 97 (333)
Q Consensus 18 ~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~l~~ 97 (333)
++.||.+++..|.+++++.|+++|+.||+... .|+.. +...+...-|.+....|..+. + +.+..+.+
T Consensus 87 t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~g-nDqvr--f~r~~~~~~~~l~viaPLrew---------~-l~r~ei~~ 153 (394)
T TIGR00032 87 TALARPLIAKKLVEAAKKEGANAVAHGCTGKG-NDQER--FERSIRLLNPDLKVIAPWRDL---------N-FTREEEIE 153 (394)
T ss_pred chhhHHHHHHHHHHHHHHcCCCEEEECccCCc-chHHH--HHHHHHHhCCCCeEECchhhc---------C-CCHHHHHH
Confidence 44677899999999999999999999997642 14533 122222111222222222211 1 23677899
Q ss_pred HhHhccccEEEcc
Q psy16535 98 GAAMLGVDCVATG 110 (333)
Q Consensus 98 ~a~~~g~~~ia~a 110 (333)
+++++|+.+..+.
T Consensus 154 ya~~~Gip~~~~~ 166 (394)
T TIGR00032 154 YAIQCGIPYPMSK 166 (394)
T ss_pred HHHHcCCCeeEec
Confidence 9999999998764
No 97
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=84.65 E-value=3.7 Score=40.84 Aligned_cols=81 Identities=19% Similarity=0.118 Sum_probs=52.9
Q ss_pred hhhhhHHHHHHHHHhHhccccEEEcccCC--cchHHHHHHHHHhcCccccccCCcccc--ccCHHHHHHHHHHcCCCcee
Q psy16535 85 TFCGVFRRQALDRGAAMLGVDCVATGHNA--DDIAETVLMNVLRGDIARLQRCTDIIT--YAYEKEIVMYAYYKKLVYFS 160 (333)
Q Consensus 85 ~~cr~~Rr~~l~~~a~~~g~~~ia~aH~~--dD~~ET~l~nl~rg~~~~L~~~~~iiR--~i~k~EI~~y~~~~~l~~~~ 160 (333)
+++|-+-=..+-++|++.|++.|+-|-+- +||+-.-+- ++...+.|+- ..++| .++|+|..+|++++|||+-.
T Consensus 94 alaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQvRFe~~--~~al~p~lki-iAP~Rew~~~R~~~i~Ya~~~gipv~~ 170 (403)
T COG0137 94 ALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQVRFELA--ILALNPDLKI-IAPWREWNLTREEEIEYAEEHGIPVKA 170 (403)
T ss_pred hhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCceeeeeee--hhhhCCCcEE-EeehhhhccChHHHHHHHHHcCCCccc
Confidence 45666666888999999999999988774 565311000 0000011111 12456 78899999999999999877
Q ss_pred c-CCCCCCc
Q psy16535 161 T-ECIFAPN 168 (333)
Q Consensus 161 D-~~n~~~~ 168 (333)
+ ..||+.+
T Consensus 171 ~~~kpySiD 179 (403)
T COG0137 171 TKEKPYSID 179 (403)
T ss_pred cCCCCcccc
Confidence 6 5676643
No 98
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=84.02 E-value=1.1 Score=45.96 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=49.6
Q ss_pred hhHHH-HHHHHHH---HHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhhhcCCCccchhhhhHHH
Q psy16535 18 CTFCG-VFRRQAL---DRGAAMLGVDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIITIGRKNNCTFCGVFRR 92 (333)
Q Consensus 18 ~~~~~-~~r~~~L---~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~~~~~~~~~~cr~~Rr 92 (333)
|..|. .+|+.+| ..++++.|++.|++|||++ |.+.+.++|+.. .... ...+. +|... +..
T Consensus 257 ~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~---dvasqtl~nl~~~~~~~----~~~v~----rPLi~----~dK 321 (482)
T PRK01269 257 DGQMGVVLKRMMLRAASKVAERYGIQALVTGEALG---QVSSQTLTNLRLIDNVT----DTLIL----RPLIA----MDK 321 (482)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCCEEEECcChH---hhhhHHHHHHHhhhhhc----CCcee----cCCcC----CCH
Confidence 55455 6666777 8999999999999999999 677888888777 3210 01111 22211 446
Q ss_pred HHHHHHhHhcccc
Q psy16535 93 QALDRGAAMLGVD 105 (333)
Q Consensus 93 ~~l~~~a~~~g~~ 105 (333)
..+-++|++.|..
T Consensus 322 ~EIi~~a~~ig~~ 334 (482)
T PRK01269 322 EDIIDLAREIGTE 334 (482)
T ss_pred HHHHHHHHHhCCh
Confidence 7788888888863
No 99
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=82.55 E-value=1.7 Score=42.00 Aligned_cols=92 Identities=10% Similarity=0.076 Sum_probs=55.1
Q ss_pred chHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCc-HHHHHHH---HHHhhchhccccc-ch-----hhhcCCCccc
Q psy16535 15 KNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDD-IAETVLM---NVLRGDIARLQRC-TD-----IITIGRKNNC 84 (333)
Q Consensus 15 ~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D-~~Etfv~---nl~rg~i~~l~~~-~~-----v~~~~~~~~~ 84 (333)
.+.|..|+.+++..|.+.++++|++++++||+.|+++. ..|+++. ++.+|+.....+. +. ..........
T Consensus 105 ~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE~~~Ra~e~~fs~r~~~~~wd~~~q~Pelw~~~~~~~~~g~~~rV~ 184 (301)
T PRK05253 105 HGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDEEKSRAKERIFSFRDEFGQWDPKNQRPELWNLYNGRINKGEHIRVF 184 (301)
T ss_pred CChHHHHHHHHHHHHHHHHHHcCCCEEEeccccchhhhhccCccccccccccccCccccChhhhhhccccccCCCeEEEe
Confidence 45799999999999999999999999999999995322 2344442 2222332111100 00 0000000112
Q ss_pred hhhhhHHHHHHHHHhHhccccEE
Q psy16535 85 TFCGVFRRQALDRGAAMLGVDCV 107 (333)
Q Consensus 85 ~~cr~~Rr~~l~~~a~~~g~~~i 107 (333)
+++ .+....+-.|+..+|+.+.
T Consensus 185 PL~-~Wte~DIw~Yi~~~~IP~~ 206 (301)
T PRK05253 185 PLS-NWTELDIWQYIERENIPIV 206 (301)
T ss_pred ehh-hCCHHHHHHHHHHcCCCCC
Confidence 221 3677888899999988753
No 100
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=82.41 E-value=2.3 Score=37.97 Aligned_cols=78 Identities=17% Similarity=0.074 Sum_probs=50.7
Q ss_pred HhhHHHHHHH-HHHHHHHHhcCCCEEEeccCCCCC---CcHHHHHHHHHHhh-chhcccccchhhhcCCCccchhhhhHH
Q psy16535 17 NCTFCGVFRR-QALDRGAAMLGVDCVATGHNADDT---DDIAETVLMNVLRG-DIARLQRCTDIITIGRKNNCTFCGVFR 91 (333)
Q Consensus 17 ~~~~~~~~r~-~~L~~~~~~~g~~~Ia~~H~ld~~---~D~~Etfv~nl~rg-~i~~l~~~~~v~~~~~~~~~~~cr~~R 91 (333)
.|..||...+ ..+..++++.|++.|++|||.++. .|.-++|++++-.. .+-. ..++. ..+ |.. .+.
T Consensus 90 ~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~~~~~d~~~~f~~~~~~~~~~~~---~~~~~--i~~-Pl~---~~~ 160 (201)
T TIGR00364 90 TFVPGRNAIFLSIAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKAFNHALNLGM---LTPVK--IRA-PLM---DLT 160 (201)
T ss_pred eeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcCCCCCCCcHHHHHHHHHHHHhhc---CCCeE--EEE-CCc---CCC
Confidence 3445665554 777899999999999999999852 14457888887762 2110 01111 011 221 167
Q ss_pred HHHHHHHhHhcc
Q psy16535 92 RQALDRGAAMLG 103 (333)
Q Consensus 92 r~~l~~~a~~~g 103 (333)
...+.++++++|
T Consensus 161 K~eI~~la~~~g 172 (201)
T TIGR00364 161 KAEIVQLADELG 172 (201)
T ss_pred HHHHHHHHHHcC
Confidence 888999999999
No 101
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=80.98 E-value=1.2 Score=43.97 Aligned_cols=35 Identities=40% Similarity=0.581 Sum_probs=32.5
Q ss_pred chHhhHH-HHHHHHHHHHHHHhcCCCEEEeccCCCC
Q psy16535 15 KNNCTFC-GVFRRQALDRGAAMLGVDCVATGHNADD 49 (333)
Q Consensus 15 ~~~~~~~-~~~r~~~L~~~~~~~g~~~Ia~~H~ld~ 49 (333)
-|+|..| +.+....|.+.+.++|++.||+||.++.
T Consensus 93 PNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~ 128 (356)
T COG0482 93 PNPCILCNKEIKFKALLDYAKELGADYIATGHYARQ 128 (356)
T ss_pred CCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEee
Confidence 5699999 9999999999999999999999999863
No 102
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=75.93 E-value=11 Score=36.16 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=49.3
Q ss_pred HHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcccccc----------CC----ccccccCHHHHHHHHHHcCCC
Q psy16535 92 RQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQR----------CT----DIITYAYEKEIVMYAYYKKLV 157 (333)
Q Consensus 92 r~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~----------~~----~iiR~i~k~EI~~y~~~~~l~ 157 (333)
.+.|++.|++.+++|++-|+=.-|.+|+. .|.+..++. |. .++|++-|+|++....+.|+|
T Consensus 110 I~VFe~ea~k~~~~~LaQGTiYpDvIES~-----~g~~~~IKSHHNVGGLP~~m~lkLvEPLr~LfKDEVR~lg~~LGlp 184 (315)
T COG0519 110 IEVFEEEAKKLGAEFLAQGTIYPDVIESG-----TGKAGTIKSHHNVGGLPEDMKLKLVEPLRELFKDEVRELGRELGLP 184 (315)
T ss_pred HHHHHHHHHhCCcceEEecccccceeeec-----CCCCCccccccccCCCccccceeeeHHHHHHhHHHHHHHHHHhCCC
Confidence 56788999999999999999999999987 333222432 11 245699999999999999999
Q ss_pred ce
Q psy16535 158 YF 159 (333)
Q Consensus 158 ~~ 159 (333)
-.
T Consensus 185 ~~ 186 (315)
T COG0519 185 EE 186 (315)
T ss_pred HH
Confidence 43
No 103
>KOG2594|consensus
Probab=71.16 E-value=17 Score=35.97 Aligned_cols=82 Identities=18% Similarity=0.188 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhh---chhcccccchhhhcC----CCccchhhhhH
Q psy16535 18 CTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRG---DIARLQRCTDIITIG----RKNNCTFCGVF 90 (333)
Q Consensus 18 ~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg---~i~~l~~~~~v~~~~----~~~~~~~cr~~ 90 (333)
...=+..|-..|.++|.+.|++.|+.+|+.. |.++.++-.++.| +|++++...+.+..+ .+|.+ .+
T Consensus 177 qDLl~~lk~kll~~vA~~~g~~~i~~g~~~t---~la~~vlt~v~~GRG~sis~~v~~~d~r~~~d~~llrPLr----Dl 249 (396)
T KOG2594|consen 177 QDLLLHLKMKLLQKVAAENGYNRIVLGDSTT---DLASHVLTAVVKGRGGSISTDVQVVDKRPKGDVKLLRPLR----DL 249 (396)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEecCchh---HHHHHHHHHHHhccCccceehhhhhccccCCCceeehhHH----HH
Confidence 3445678889999999999999999999999 8999999999983 366655444433221 12332 34
Q ss_pred HHHHHHHHhHhccccE
Q psy16535 91 RRQALDRGAAMLGVDC 106 (333)
Q Consensus 91 Rr~~l~~~a~~~g~~~ 106 (333)
-...+..|+.-.|..+
T Consensus 250 ~~~Ei~~y~~l~~l~~ 265 (396)
T KOG2594|consen 250 LSLEITSYCLLDGLAY 265 (396)
T ss_pred HHHHHHHHHHhhcCCc
Confidence 4566777776666654
No 104
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=70.84 E-value=38 Score=30.38 Aligned_cols=122 Identities=13% Similarity=-0.001 Sum_probs=72.4
Q ss_pred HHHHhcCCCEEEeccCCCCCCcH------HHHHHHHHHh-hchhcccccchhhhcCCCccchhhhhHHHHHHHHHhHhcc
Q psy16535 31 RGAAMLGVDCVATGHNADDTDDI------AETVLMNVLR-GDIARLQRCTDIITIGRKNNCTFCGVFRRQALDRGAAMLG 103 (333)
Q Consensus 31 ~~~~~~g~~~Ia~~H~ld~~~D~------~Etfv~nl~r-g~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~l~~~a~~~g 103 (333)
.++.+.|.+++++.+......+. .-..+..+++ -++|......+. .... .- ..-+..+.+++++ |
T Consensus 17 ~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~-----~~e~-~~-~~l~~~l~~~~~~-g 88 (194)
T cd01994 17 YRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISG-----EEED-EV-EDLKELLRKLKEE-G 88 (194)
T ss_pred HHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCC-----CchH-HH-HHHHHHHHHHHHc-C
Confidence 34445688777764333221121 3456666777 667754322211 0111 11 1235667777777 9
Q ss_pred ccEEEcccCCcchHHHHHHHHHhcCccccccCCccccccCHHHHHHHHHHcCCCceecCC
Q psy16535 104 VDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIITYAYEKEIVMYAYYKKLVYFSTEC 163 (333)
Q Consensus 104 ~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR~i~k~EI~~y~~~~~l~~~~D~~ 163 (333)
++.|++|.+.+|..-+...+++... ||....|++. .+.+++..=....|+..+.-..
T Consensus 89 ~~~vv~G~i~sd~~~~~~e~~~~~~--gl~~~~PLW~-~~~~~ll~e~~~~g~~~~iv~v 145 (194)
T cd01994 89 VDAVVFGAILSEYQRTRVERVCERL--GLEPLAPLWG-RDQEELLREMIEAGFKAIIIKV 145 (194)
T ss_pred CCEEEECccccHHHHHHHHHHHHHc--CCEEEecccC-CCHHHHHHHHHHcCCeEEEEEe
Confidence 9999999999998888888888874 3333334443 4555666666688888666433
No 105
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=68.24 E-value=13 Score=37.26 Aligned_cols=81 Identities=20% Similarity=0.117 Sum_probs=50.1
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhHHHHHHH
Q psy16535 17 NCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQALD 96 (333)
Q Consensus 17 ~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~l~ 96 (333)
.|+.||.+-...+.+++++.|+++|+.|++... .|+.. | +..++.+.+...+. .|..-...+.++.+.
T Consensus 86 ~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~~g-nDq~r-f-----~~~~~al~pel~Vi-----aPlre~~~~sr~ev~ 153 (385)
T cd01999 86 GTALARPLIAKALVEVAKEEGADAVAHGCTGKG-NDQVR-F-----ELAFYALNPDLKII-----APWRDWEFLSREEEI 153 (385)
T ss_pred CcHhHHHHHHHHHHHHHHHcCCCEEEeCCCCCC-CcHHH-H-----HHHHHhhCCCCEEE-----cchhhhhcCCHHHHH
Confidence 578899999999999999999999999888641 25541 1 11111111111110 111111113688999
Q ss_pred HHhHhccccEEEc
Q psy16535 97 RGAAMLGVDCVAT 109 (333)
Q Consensus 97 ~~a~~~g~~~ia~ 109 (333)
++|+++|+..-.+
T Consensus 154 ~~A~~~Gip~~~~ 166 (385)
T cd01999 154 EYAEEHGIPVPVT 166 (385)
T ss_pred HHHHHcCCCCccc
Confidence 9999999976443
No 106
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=67.77 E-value=19 Score=32.05 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=24.9
Q ss_pred cchhhhhHHHHHHHHHhHhccccEEEc
Q psy16535 83 NCTFCGVFRRQALDRGAAMLGVDCVAT 109 (333)
Q Consensus 83 ~~~~cr~~Rr~~l~~~a~~~g~~~ia~ 109 (333)
-|..|=.+|-..-.++|+++|+++..|
T Consensus 84 RC~~Cy~~RL~~tA~~A~e~gfd~FtT 110 (176)
T PF02677_consen 84 RCRVCYDLRLEKTAQYAKELGFDYFTT 110 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEc
Confidence 689999999999999999999998877
No 107
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=67.73 E-value=98 Score=28.76 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=63.5
Q ss_pred ccchhhhhHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCccccccCCcccc-------ccCHHHHHHHHHHc
Q psy16535 82 NNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT-------YAYEKEIVMYAYYK 154 (333)
Q Consensus 82 ~~~~~cr~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR-------~i~k~EI~~y~~~~ 154 (333)
+||--|..+=.....+.+++.+++.|++|--+. .|.+. +..-..++| ..||.|+...+..+
T Consensus 133 hpCGRCh~~I~~~V~~k~re~di~~vafGDlLs-----------~G~~s-vy~eD~i~rlnlPAflAltK~Elr~il~~~ 200 (255)
T COG1365 133 HPCGRCHSMIENAVMDKARELDIDVVAFGDLLS-----------TGYGS-VYREDGIFRLNLPAFLALTKDELRSILKWN 200 (255)
T ss_pred CCcchHHHHHHHHHHHHHHhcCCeEEEEccccc-----------ccccc-eeccCCEEEEccHHHHhhCcHHHHHHHHhc
Confidence 599999988888899999999999999984433 23221 222223444 68999999999999
Q ss_pred CCCce-ecCCCCCCchhHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHH
Q psy16535 155 KLVYF-STECIFAPNAYRGHARTFLKHLEKIRPASI-MDIIHSGEQMA 200 (333)
Q Consensus 155 ~l~~~-~D~~n~~~~~~Rn~iR~~lp~l~~~~p~~~-~~l~~~~~~~~ 200 (333)
++.+- .=.||. +|. .-+.+|..+ .+|.+..+.++
T Consensus 201 ~~e~~~kygCPl----l~e--------~hkr~p~lkRfsIQRVLRE~R 236 (255)
T COG1365 201 GYELEMKYGCPL----LRE--------VHKRHPHLKRFSIQRVLREVR 236 (255)
T ss_pred CccchhccCCch----HHH--------HHHhCchhHHHHHHHHHHHHh
Confidence 99651 134543 332 224677776 66766655443
No 108
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=67.68 E-value=51 Score=30.27 Aligned_cols=115 Identities=11% Similarity=0.103 Sum_probs=66.3
Q ss_pred CCCEEEeccCCCCCCcHHHHHHHHHHh-hc--hhccc--ccchhh----hcCC----CccchhhhhHHHHHHHHHhHhcc
Q psy16535 37 GVDCVATGHNADDTDDIAETVLMNVLR-GD--IARLQ--RCTDII----TIGR----KNNCTFCGVFRRQALDRGAAMLG 103 (333)
Q Consensus 37 g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~--i~~l~--~~~~v~----~~~~----~~~~~~cr~~Rr~~l~~~a~~~g 103 (333)
.+.+|.++.+..- .+-..|+..+.+ .+ +.... ...... ..+. ..+..-|+..+-+=|.++.++++
T Consensus 52 ~i~vv~vDTg~~f--pET~e~~d~~~~~~~~~l~v~~~~~~~~~~~~~~~~G~~~~~~~~~~cc~~~Kv~Pl~ral~~~~ 129 (226)
T TIGR02057 52 MIPVIFIDTLYHF--PQTLTLKDELTKKYYQTLNLYKYDGCESEADFEAKYGKLLWQKDIEKYDYIAKVEPMQRALKELN 129 (226)
T ss_pred CCCEEEEeCCCCC--HHHHHHHHHHHHHhCCceEEEEeCCchhHHHHHHhcCCCccccCHHHHHHHHhhHHHHHHHHhcC
Confidence 4778887665542 355668888877 65 33221 111110 1111 12333455555677888888888
Q ss_pred ccEEEcccCCcchHHHHHHHHHhcCccccc--cCCcccc-----ccCHHHHHHHHHHcCCCcee
Q psy16535 104 VDCVATGHNADDIAETVLMNVLRGDIARLQ--RCTDIIT-----YAYEKEIVMYAYYKKLVYFS 160 (333)
Q Consensus 104 ~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~--~~~~iiR-----~i~k~EI~~y~~~~~l~~~~ 160 (333)
.+.+.+|--.++-. .|..-..+. ..+.+++ +.+..||-.|+.+++|||..
T Consensus 130 ~~~~itG~Rr~es~-------~Ra~~~~~~~d~~~~~~kv~Pi~~Wt~~dVw~Yi~~~~lP~np 186 (226)
T TIGR02057 130 ASAWFTGRRRDQGS-------ARANLPVIEIDEQNGILKVNPLIDWTFEQVYQYLDAHNVPYNP 186 (226)
T ss_pred CCEEEEecchhhCc-------cccCCccccccCCCCeEEEeehhhCCHHHHHHHHHHcCCCCCc
Confidence 88888887766521 121111111 1122333 89999999999999999843
No 109
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=67.15 E-value=4.9 Score=39.30 Aligned_cols=34 Identities=9% Similarity=-0.121 Sum_probs=32.2
Q ss_pred chHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCC
Q psy16535 15 KNNCTFCGVFRRQALDRGAAMLGVDCVATGHNAD 48 (333)
Q Consensus 15 ~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld 48 (333)
..+|..|..+++..+.+++++.|+++|+.|||.+
T Consensus 138 ~~pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~~d 171 (343)
T TIGR03573 138 GDPEWPQDHAIFASVYQVALKFNIPLIIWGENIA 171 (343)
T ss_pred CCCchhhhhHHHHHHHHHHHHhCCCEEEeCCCHH
Confidence 4689999999999999999999999999999988
No 110
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=66.09 E-value=3.6 Score=40.70 Aligned_cols=34 Identities=41% Similarity=0.592 Sum_probs=25.8
Q ss_pred chHhhHHHH-HHHHHHHHHHHh-cCCCEEEeccCCC
Q psy16535 15 KNNCTFCGV-FRRQALDRGAAM-LGVDCVATGHNAD 48 (333)
Q Consensus 15 ~~~~~~~~~-~r~~~L~~~~~~-~g~~~Ia~~H~ld 48 (333)
-|+|..|-+ ++..+|.+.+++ .|+++|||||-.+
T Consensus 92 PNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAr 127 (356)
T PF03054_consen 92 PNPCVLCNRFIKFGALLEYADEGLGADYIATGHYAR 127 (356)
T ss_dssp --HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEE
T ss_pred CChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEE
Confidence 579999987 889999999999 9999999999775
No 111
>PRK08557 hypothetical protein; Provisional
Probab=59.79 E-value=1.2e+02 Score=30.72 Aligned_cols=121 Identities=12% Similarity=-0.005 Sum_probs=66.9
Q ss_pred CCCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccch-----hhhcCC--CccchhhhhHHHHHHHHHhHh---cccc
Q psy16535 37 GVDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTD-----IITIGR--KNNCTFCGVFRRQALDRGAAM---LGVD 105 (333)
Q Consensus 37 g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~-----v~~~~~--~~~~~~cr~~Rr~~l~~~a~~---~g~~ 105 (333)
.+.++.++++... .+...|+.++++ .+++......+ +...+. .....-|...+-.-+.++.++ .+..
T Consensus 207 ~i~vvfvDTG~ef--pET~e~ve~v~~~ygl~i~v~~~~~f~~~~~~~G~Ps~~~RwCc~~lKi~Pl~r~lk~~~~~~~~ 284 (417)
T PRK08557 207 DLEVIFIDTGLEY--PETINYVKDFAKKYDLNLDTLDGDNFWENLEKEGIPTKDNRWCNSACKLMPLKEYLKKKYGNKKV 284 (417)
T ss_pred CCEEEEEECCCCC--HHHHHHHHHHHHHhCCCEEEEechHHHHHHhhccCCcccchhhhHHHhHHHHHHHHHhhcCcCce
Confidence 3667777777653 566779999999 77765432211 111111 111111334555666777665 3344
Q ss_pred EEEcccCCcchHHHHHHHHHhcCccccccCC--ccccccCHHHHHHHHHHcCCCcee
Q psy16535 106 CVATGHNADDIAETVLMNVLRGDIARLQRCT--DIITYAYEKEIVMYAYYKKLVYFS 160 (333)
Q Consensus 106 ~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~--~iiR~i~k~EI~~y~~~~~l~~~~ 160 (333)
...+|--.++-....-+...+.++ ...+.. .+|...+..|+-.|+..+++||-.
T Consensus 285 l~i~G~Rr~ES~~Ra~~~~~~~~~-~~~~~~~i~PI~~Wt~~dVW~YI~~~~lp~np 340 (417)
T PRK08557 285 LTIDGSRKYESFTRANLDYERKSG-FIDFQTNVFPILDWNSLDIWSYIYLNDILYNP 340 (417)
T ss_pred EEEEeeecccchhhccCceecccc-cccCceeEEecccCCHHHHHHHHHHcCCCCCc
Confidence 667787777643222111222211 011111 233489999999999999999855
No 112
>PLN00200 argininosuccinate synthase; Provisional
Probab=58.81 E-value=18 Score=36.40 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=47.9
Q ss_pred hHhhHHHH-----HHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhH
Q psy16535 16 NNCTFCGV-----FRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVF 90 (333)
Q Consensus 16 ~~~~~~~~-----~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~ 90 (333)
.-|+.|.. +-...|.+++++.|+++|+.||+..+ .|+.. | +-++..+.+...+. .|..-. .+
T Consensus 87 e~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgkG-nDq~r-f-----~~~~~al~pel~Vi-----aPlre~-~~ 153 (404)
T PLN00200 87 EGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGKG-NDQVR-F-----ELTFFALNPELKVV-----APWREW-DI 153 (404)
T ss_pred cceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCCC-CcHHH-H-----HHHHHHhCCCCeee-----Cchhhc-CC
Confidence 34677766 88899999999999999999988831 26642 2 11111111111111 011000 13
Q ss_pred -HHHHHHHHhHhccccEE
Q psy16535 91 -RRQALDRGAAMLGVDCV 107 (333)
Q Consensus 91 -Rr~~l~~~a~~~g~~~i 107 (333)
.+....++|+++|+..-
T Consensus 154 ~~r~e~~~~A~~~Gipv~ 171 (404)
T PLN00200 154 KGREDLIEYAKKHNIPVP 171 (404)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 38899999999999643
No 113
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=56.03 E-value=37 Score=30.85 Aligned_cols=66 Identities=18% Similarity=0.037 Sum_probs=33.7
Q ss_pred HHHHhHhccccEEEcccCCcchH------HHHHHHHHhcCccccccCCcc---ccccCHHHHHHHHHHcCCCcee
Q psy16535 95 LDRGAAMLGVDCVATGHNADDIA------ETVLMNVLRGDIARLQRCTDI---ITYAYEKEIVMYAYYKKLVYFS 160 (333)
Q Consensus 95 l~~~a~~~g~~~ia~aH~~dD~~------ET~l~nl~rg~~~~L~~~~~i---iR~i~k~EI~~y~~~~~l~~~~ 160 (333)
-..+|...|++.|++|.|.+|.. ..|+..+-+=-..+......+ ...++|.||...+.+.|+|+-.
T Consensus 105 Aa~~A~~~g~~~i~~G~~~~D~~~ypDc~~~F~~~~~~~~~~~~~~~v~i~~P~~~~tK~eiv~~~~~lg~~~~~ 179 (209)
T PF06508_consen 105 AASYAESLGAEAIYIGVNAEDASGYPDCRPEFIDAMNRLLNLGEGGPVRIETPLIDLTKAEIVKLGVELGVPLEL 179 (209)
T ss_dssp HHHHHHHHT-SEEEE---S-STT--GGGSHHHHHHHHHHHHHHHTS--EEE-TTTT--HHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHCCCCEEEEEECcCccCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCHHHHHHHHHHcCCCHHH
Confidence 34678899999999999999932 334333321100010000111 2278999999999999976544
No 114
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=54.62 E-value=60 Score=29.39 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=27.4
Q ss_pred CCchHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCC
Q psy16535 13 GRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADD 49 (333)
Q Consensus 13 ~~~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~ 49 (333)
...+.|-.|+++=+..-.+++++.|+..|++|..+.+
T Consensus 84 ~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQ 120 (197)
T PF02568_consen 84 KERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQ 120 (197)
T ss_dssp -GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSS
T ss_pred CccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHH
Confidence 3467999999999999999999999999999999985
No 115
>PRK02628 nadE NAD synthetase; Reviewed
Probab=52.92 E-value=17 Score=38.94 Aligned_cols=65 Identities=20% Similarity=0.043 Sum_probs=49.2
Q ss_pred hhhhHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCccccccCCccccccCHHHHHHHHHHcC
Q psy16535 86 FCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIITYAYEKEIVMYAYYKK 155 (333)
Q Consensus 86 ~cr~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR~i~k~EI~~y~~~~~ 155 (333)
+|.++|+..|..+|.+.|..+++|| |..|+.+.+....-|.+. ++..++-.++|.++.+.++..+
T Consensus 458 ~qaR~R~~~L~~~An~~g~lvl~Tg----n~sE~~~Gy~T~~~GD~~-~~~~~~~~l~Kt~v~~l~~~~~ 522 (679)
T PRK02628 458 VQAGERTQILFRLANQHGGIVIGTG----DLSELALGWCTYGVGDHM-SHYNVNASVPKTLIQHLIRWVI 522 (679)
T ss_pred hhHHHHHHHHHHHHhhcCcEEEcCC----chhhHHhCceecCCCCcc-cccccccCCcHHHHHHHHHHHH
Confidence 4788999999999999999999999 778888887766512211 1223456889999988888764
No 116
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=47.13 E-value=2e+02 Score=25.68 Aligned_cols=128 Identities=9% Similarity=0.038 Sum_probs=65.4
Q ss_pred HHHHHHhc--CCCEEEeccCCCCCCcHHHHHHHHHHh-hchhc--ccccchhhh----cC----CCccchhhhhHHHHHH
Q psy16535 29 LDRGAAML--GVDCVATGHNADDTDDIAETVLMNVLR-GDIAR--LQRCTDIIT----IG----RKNNCTFCGVFRRQAL 95 (333)
Q Consensus 29 L~~~~~~~--g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~--l~~~~~v~~----~~----~~~~~~~cr~~Rr~~l 95 (333)
|..++.+. .+.++.++.+..- .+...|+..+.. .++.. +....+... .+ ...+..-|...+-.-|
T Consensus 29 ll~L~~~~~~~~~v~f~DTg~ef--peT~efv~~~~~~~~l~i~~~~~~~~~~~~~~~~g~~~~~~~~~~cc~~~K~~pl 106 (212)
T TIGR00434 29 LLDLVSKISPDIPVIFLDTGYHF--PETYELIDELTERYPLNIKVYKPDLSLAEQAAKYGDKLWEQDPNKYDYLRKVEPM 106 (212)
T ss_pred HHHHHHhcCCCCcEEEecCCCCC--HHHHHHHHHHHHHhCCceEEECCchhHHHHHHhcCCCccccChHHHhhHHhHHHH
Confidence 34444433 3556665544432 344556888877 54332 221111111 11 0122333555556778
Q ss_pred HHHhHhccccEEEcccCCcchHHHHHHHHHh-cCccccccCCccccccCHHHHHHHHHHcCCCce
Q psy16535 96 DRGAAMLGVDCVATGHNADDIAETVLMNVLR-GDIARLQRCTDIITYAYEKEIVMYAYYKKLVYF 159 (333)
Q Consensus 96 ~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~r-g~~~~L~~~~~iiR~i~k~EI~~y~~~~~l~~~ 159 (333)
.++.++++...+.+|--.||-..-..+..+. ....+.-+ ..+|.+.+.+||-+|+..+||||.
T Consensus 107 ~~~l~~~~~~~~i~GiR~~Es~~R~~~~~~~~~~~~~~~~-v~PI~dWt~~dVw~Yi~~~~lp~n 170 (212)
T TIGR00434 107 HRALKELHASAWFTGLRRDQGPSRANLSILNIDEKFGILK-VLPLIDWTWKDVYQYIDAHNLPYN 170 (212)
T ss_pred HHHHHhcCCcEEEEecccccCccccCCceeeecCCCCcEE-EeehhhCCHHHHHHHHHHcCCCCC
Confidence 8888888777777887777631110000000 00000000 012338999999999999999984
No 117
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=47.10 E-value=20 Score=33.12 Aligned_cols=69 Identities=25% Similarity=0.190 Sum_probs=44.8
Q ss_pred hHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhhhcCCCccchhhhhHHHHH
Q psy16535 16 NNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIITIGRKNNCTFCGVFRRQA 94 (333)
Q Consensus 16 ~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~ 94 (333)
..|..|.++|...|..++++.|+-+++++| .+|.++..+.. |. ...++ .|.. .+....
T Consensus 109 ~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn-------~~E~~~G~~t~~gd-----~~~~i-----~Pl~----~l~K~e 167 (248)
T cd00553 109 ALGNIQARLRMVILYALANKLGGLVLGTGN-------KSELLLGYFTKYGD-----GAADI-----NPIG----DLYKTQ 167 (248)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCEEEcCCc-------HhHHHhCCeeccCC-----cccCc-----cccC----CCcHHH
Confidence 369999999999999999999987777766 44555432222 21 01111 1211 245778
Q ss_pred HHHHhHhcccc
Q psy16535 95 LDRGAAMLGVD 105 (333)
Q Consensus 95 l~~~a~~~g~~ 105 (333)
+.++|+.+|+.
T Consensus 168 V~~la~~~~ip 178 (248)
T cd00553 168 VRELARYLGVP 178 (248)
T ss_pred HHHHHHHHCch
Confidence 88888888843
No 118
>KOG0098|consensus
Probab=46.57 E-value=27 Score=31.76 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=29.3
Q ss_pred ccCHHHHHHHHHHcCCCceecCCCCCC---chhHHHHHHHHHHH
Q psy16535 141 YAYEKEIVMYAYYKKLVYFSTECIFAP---NAYRGHARTFLKHL 181 (333)
Q Consensus 141 ~i~k~EI~~y~~~~~l~~~~D~~n~~~---~~~Rn~iR~~lp~l 181 (333)
.++++|-++||+++|+.|.+.+++-.. +.++|..+.+.+.+
T Consensus 128 ~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~ 171 (216)
T KOG0098|consen 128 EVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKI 171 (216)
T ss_pred cccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999987776432 23444444444433
No 119
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=42.27 E-value=45 Score=21.67 Aligned_cols=20 Identities=0% Similarity=-0.067 Sum_probs=16.8
Q ss_pred cCHHHHHHHHHHcCCCceec
Q psy16535 142 AYEKEIVMYAYYKKLVYFST 161 (333)
Q Consensus 142 i~k~EI~~y~~~~~l~~~~D 161 (333)
.+.+++..|+..+||++-..
T Consensus 4 Ws~~~L~~wL~~~gi~~~~~ 23 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIPVPKS 23 (38)
T ss_pred CCHHHHHHHHHHcCCCCCCC
Confidence 57899999999999987543
No 120
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=40.30 E-value=24 Score=29.94 Aligned_cols=114 Identities=15% Similarity=0.135 Sum_probs=57.5
Q ss_pred CEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhh------hcC-CCccc--hhhhhHHHHHHHHHhHhccccEEE
Q psy16535 39 DCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDII------TIG-RKNNC--TFCGVFRRQALDRGAAMLGVDCVA 108 (333)
Q Consensus 39 ~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~------~~~-~~~~~--~~cr~~Rr~~l~~~a~~~g~~~ia 108 (333)
.++.++++.. -.+..+|+..+.. .+++......+.. ... ..+.. ..|..++-.-+.++.++++...++
T Consensus 27 ~vv~~dtg~e--~p~t~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~K~~p~~~~~~~~~~~~~~ 104 (174)
T PF01507_consen 27 PVVFIDTGYE--FPETYEFVDELAKRYGIPIIVYRPPETFEQRFILYGWPSKLWRWWCCSILKVKPLRRALKEYGKDVWI 104 (174)
T ss_dssp EEEEEE-STB---HHHHHHHHHHHHHTTCEEEEEETTSHHHHHHHHHHHSTTHHHHHHHHHHTHHHHHHHHHHTTESEEE
T ss_pred cEEEEecCcc--CHHHHHHHHHHHhhhhhhhhhcccccchhhccccccccchhhhHHHHHHHHHHHHhhhhcchHHHHHH
Confidence 3566655554 2567788888888 6665222111110 011 11111 135567777888889999999999
Q ss_pred cccCCcchHHHHHHHHHhcCcccccc-CCcc-----ccccCHHHHHHHHHHcCCCce
Q psy16535 109 TGHNADDIAETVLMNVLRGDIARLQR-CTDI-----ITYAYEKEIVMYAYYKKLVYF 159 (333)
Q Consensus 109 ~aH~~dD~~ET~l~nl~rg~~~~L~~-~~~i-----iR~i~k~EI~~y~~~~~l~~~ 159 (333)
+|--.|+-......+.. .... .... |-..+++||-.|+..+|+|+-
T Consensus 105 ~G~R~~Es~~R~~~~~~-----~~~~~~~~~~~~~Pi~~wt~~dV~~yi~~~~l~~~ 156 (174)
T PF01507_consen 105 IGVRADESPRRAKLPMF-----EFDEDNPKIIRVYPIADWTEEDVWDYIKANGLPYN 156 (174)
T ss_dssp ----TTSTTGCCGSSSE-----EEETTTTSEEEE-TTTT--HHHHHHHHHHHT--B-
T ss_pred HHHHhhchhhhhhchhh-----hcccccCCEEEEEehhhCCHHHHHHHHHHhcCCCc
Confidence 99988873211110000 1111 1112 228999999999999999863
No 121
>PRK04527 argininosuccinate synthase; Provisional
Probab=39.73 E-value=55 Score=32.99 Aligned_cols=78 Identities=21% Similarity=0.150 Sum_probs=45.2
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCCEEEeccC--CCCCCcHHHHHHHHHHh-hchhcccccchhhhcCCCccchhhhhHHHH
Q psy16535 17 NCTFCGVFRRQALDRGAAMLGVDCVATGHN--ADDTDDIAETVLMNVLR-GDIARLQRCTDIITIGRKNNCTFCGVFRRQ 93 (333)
Q Consensus 17 ~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~--ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~ 93 (333)
+|. .|-+....|.+++++.|+++|+.|.+ .+ |+.. |=..+-. ..+ ....|....... .. --|+
T Consensus 90 ~~~-nR~~~~~~l~e~A~~~G~~~IA~G~tgkgn---Dq~r-frpg~~Al~el---~ViaPlre~~~~-k~-----~~R~ 155 (400)
T PRK04527 90 LVS-DRYLIVDAALKRAEELGTRIIAHGCTGMGN---DQVR-FDLAVKALGDY---QIVAPIREIQKE-HT-----QTRA 155 (400)
T ss_pred ccc-cHHHHHHHHHHHHHHCCCCEEEecCcCCCC---chhh-ccHHHHHhhcC---CccchHHHhcCc-cc-----ccHH
Confidence 443 66677789999999999999999886 45 5532 2222111 111 111222221110 00 1267
Q ss_pred HHHHHhHhccccEEE
Q psy16535 94 ALDRGAAMLGVDCVA 108 (333)
Q Consensus 94 ~l~~~a~~~g~~~ia 108 (333)
...+||+++|+..=.
T Consensus 156 ~~i~ya~~~gipv~~ 170 (400)
T PRK04527 156 YEQKYLEERGFGVRA 170 (400)
T ss_pred HHHHHHHHcCCCCCC
Confidence 788999999997533
No 122
>PTZ00323 NAD+ synthase; Provisional
Probab=38.93 E-value=83 Score=30.27 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=37.5
Q ss_pred HHHHhHhccccEEEccc-CCcchHHHHHHHHHhcCccccc--cCCc--cccccCHHHHHHHHHHcCCC
Q psy16535 95 LDRGAAMLGVDCVATGH-NADDIAETVLMNVLRGDIARLQ--RCTD--IITYAYEKEIVMYAYYKKLV 157 (333)
Q Consensus 95 l~~~a~~~g~~~ia~aH-~~dD~~ET~l~nl~rg~~~~L~--~~~~--iiR~i~k~EI~~y~~~~~l~ 157 (333)
+...+.+.|.+.+++|. |.||.... |-.. +. +++. ++-.++|.||...++..|+|
T Consensus 152 la~~~~~~g~~~lV~GT~N~sE~~~~-------Gy~t-~~GDg~~d~~pia~L~K~eVr~LAr~l~lp 211 (294)
T PTZ00323 152 VAQLLSQEGTPAVVMGTGNFDEDGYL-------GYFC-KAGDGVVDVQLISDLHKSEVFLVARELGVP 211 (294)
T ss_pred HHHHHhhcCCCeEEECCCCchhhhHh-------chHh-hcCCCCcCchhhcCCcHHHHHHHHHHcCCC
Confidence 44455577889999999 99994221 3111 11 1222 33389999999999999998
No 123
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=38.68 E-value=1.1e+02 Score=27.30 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhHHHHHHHHHhHhccc
Q psy16535 25 RRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQALDRGAAMLGV 104 (333)
Q Consensus 25 r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~l~~~a~~~g~ 104 (333)
..+.+..+++..|+..+.+.-.-+ ..+..+.+...+-+..- - +...+. .+. .+...-+..++++|.+.|+
T Consensus 46 ~~e~~~~~A~~lgipl~~i~~~~~-~e~~~~~l~~~l~~~~~--~-g~~~vv--~G~----i~sd~~~~~~e~~~~~~gl 115 (194)
T cd01994 46 NHELLELQAEAMGIPLIRIEISGE-EEDEVEDLKELLRKLKE--E-GVDAVV--FGA----ILSEYQRTRVERVCERLGL 115 (194)
T ss_pred CHHHHHHHHHHcCCcEEEEeCCCC-chHHHHHHHHHHHHHHH--c-CCCEEE--ECc----cccHHHHHHHHHHHHHcCC
Confidence 456778888999998776543222 11333333322222110 0 111111 011 1112457778889999998
Q ss_pred cEEEcccCCcchHHHHHHHHHhcCcc-ccc---c--CC-cccc-ccCHHHHHHHHHHcCCCceecCCCC
Q psy16535 105 DCVATGHNADDIAETVLMNVLRGDIA-RLQ---R--CT-DIIT-YAYEKEIVMYAYYKKLVYFSTECIF 165 (333)
Q Consensus 105 ~~ia~aH~~dD~~ET~l~nl~rg~~~-~L~---~--~~-~iiR-~i~k~EI~~y~~~~~l~~~~D~~n~ 165 (333)
..+..==+. |+- .++..++..... -+. . .+ ..+. .++++-+.. .+...++--|+|-.
T Consensus 116 ~~~~PLW~~-~~~-~ll~e~~~~g~~~~iv~v~~~~L~~~~lG~~~~~~~~~~--~~~~~~~g~~~~GE 180 (194)
T cd01994 116 EPLAPLWGR-DQE-ELLREMIEAGFKAIIIKVAAEGLDESWLGREIDEMFIEL--LELNEKYGVDPCGE 180 (194)
T ss_pred EEEecccCC-CHH-HHHHHHHHcCCeEEEEEeccCCCCHHHCCCCccHhhHHH--HHhhhhcCcCccCC
Confidence 766554443 432 366666643211 121 1 11 1222 666665643 33444555566653
No 124
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=35.99 E-value=50 Score=31.79 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=29.6
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCC
Q psy16535 17 NCTFCGVFRRQALDRGAAMLGVDCVATGHNADD 49 (333)
Q Consensus 17 ~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~ 49 (333)
....|+.++.+.|.+..+++|++++++||..|+
T Consensus 99 ~~~~c~vlK~~pL~~al~e~g~da~itG~RRDE 131 (294)
T TIGR02039 99 SALHTDIMKTEALRQALDKNQFDAAFGGARRDE 131 (294)
T ss_pred hHHHhhHHHHHHHHHHHHHcCCCEEEecCChhh
Confidence 455789999999999999999999999998884
No 125
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=35.52 E-value=37 Score=32.76 Aligned_cols=31 Identities=26% Similarity=0.135 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHhHhccccEEEcccCCcchH
Q psy16535 87 CGVFRRQALDRGAAMLGVDCVATGHNADDIA 117 (333)
Q Consensus 87 cr~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ 117 (333)
++.-=|+|+.++.++++++.+.|.|..+|.+
T Consensus 191 aq~~ir~Flke~n~~~~aTVllTTH~~~di~ 221 (325)
T COG4586 191 AQANIREFLKEYNEERQATVLLTTHIFDDIA 221 (325)
T ss_pred HHHHHHHHHHHHHHhhCceEEEEecchhhHH
Confidence 4444589999999999999999999999964
No 126
>PRK13795 hypothetical protein; Provisional
Probab=31.61 E-value=5.2e+02 Score=27.63 Aligned_cols=120 Identities=11% Similarity=0.065 Sum_probs=60.7
Q ss_pred CCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccch--h----hhcCC--CccchhhhhHHHHHHHHHhHhc--cccE
Q psy16535 38 VDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTD--I----ITIGR--KNNCTFCGVFRRQALDRGAAML--GVDC 106 (333)
Q Consensus 38 ~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~--v----~~~~~--~~~~~~cr~~Rr~~l~~~a~~~--g~~~ 106 (333)
+.++.+++++.. .+...++..++. .+++......+ . ...+. +....-|...+-.-+.++.++. +...
T Consensus 270 ~~vvfiDTg~ef--pet~e~v~~~~~~~gi~i~~~~~~~~f~~~~~~~g~P~~~~rwCc~~~K~~Pl~r~l~~~~~~~~~ 347 (636)
T PRK13795 270 FKAFFNNTGLEF--PETVENVKEVAEEYGIELIEADAGDAFWRAVEKFGPPARDYRWCCKVCKLGPITRAIKENFPKGCL 347 (636)
T ss_pred cEEEEEeCCCCC--HHHHHHHHHHHHHcCCcEEEEcccHhHHHhhhccCCCccccccchhhHhHHHHHHHHHhhCCCceE
Confidence 455666555542 345567888887 66665432211 1 11110 1111123344455566666655 2235
Q ss_pred EEcccCCcchHHHHHHHHHhcCccccccCC--ccccccCHHHHHHHHHHcCCCcee
Q psy16535 107 VATGHNADDIAETVLMNVLRGDIARLQRCT--DIITYAYEKEIVMYAYYKKLVYFS 160 (333)
Q Consensus 107 ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~--~iiR~i~k~EI~~y~~~~~l~~~~ 160 (333)
.++|--.++-....-+..+..+ ....+.. .+|...+..|+-.|+..+++||-+
T Consensus 348 ~i~G~Rr~ES~~R~~~~~~~~~-~~~~~~~~~~PI~~Wt~~dVw~YI~~~~lp~np 402 (636)
T PRK13795 348 TFVGQRKYESFSRAKSPRVWRN-PWVPNQIGASPIQDWTALEVWLYIFWRKLPYNP 402 (636)
T ss_pred EEEEEEccchHHHhhCcccccC-CCCCCcEEEechHhCCHHHHHHHHHHhCCCCCh
Confidence 6678777774322211111100 0011111 123388999999999999999864
No 127
>PRK08576 hypothetical protein; Provisional
Probab=31.12 E-value=47 Score=33.83 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=28.2
Q ss_pred hHhhHHHHHHHHHHHHHHHhcCCCEEEeccC
Q psy16535 16 NNCTFCGVFRRQALDRGAAMLGVDCVATGHN 46 (333)
Q Consensus 16 ~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ 46 (333)
..|..|...++..|.+.++++|++++++||.
T Consensus 309 ~~~rcCt~lK~~pL~raake~g~~~iatG~R 339 (438)
T PRK08576 309 HSNRWCTKLKVEALEEAIRELEDGLLVVGDR 339 (438)
T ss_pred cccchhhHHHHHHHHHHHHhCCCCEEEEEee
Confidence 3688899999999999999999999999983
No 128
>PF05047 L51_S25_CI-B8: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain ; InterPro: IPR007741 Proteins containing this domain are located in the mitochondrion and include ribosomal protein L51, and S25. This domain is also found in mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) 1.6.5.3 from EC. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins.; PDB: 1S3A_A.
Probab=28.54 E-value=54 Score=22.57 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHCCCHHHH
Q psy16535 170 YRGHARTFLKHLEKIRPASIMD 191 (333)
Q Consensus 170 ~Rn~iR~~lp~l~~~~p~~~~~ 191 (333)
.|.++++-||.|...||++.-.
T Consensus 1 ~R~F~~~~lp~l~~~NP~v~~~ 22 (52)
T PF05047_consen 1 ARDFLKNNLPTLKYHNPQVQFE 22 (52)
T ss_dssp HHHHHHHTHHHHHHHSTT--EE
T ss_pred CHhHHHHhHHHHHHHCCCcEEE
Confidence 4889988999999999997543
No 129
>PF15396 FAM60A: Protein Family FAM60A
Probab=27.80 E-value=61 Score=29.72 Aligned_cols=46 Identities=28% Similarity=0.232 Sum_probs=34.2
Q ss_pred hhhhhhhcCcchhhhhhHHhhHHHHhccCCcccccHHHHHHHHHHhhcC
Q psy16535 210 REVCELCGFLSSQKICKACSLLEGLNKGLPKLSLSKRSVQDRIRQENYS 258 (333)
Q Consensus 210 ~~~~~~~g~~~~~~ic~~c~l~~~~~~~l~~~~~~~~r~i~~~l~~~~~ 258 (333)
...|..-.++-+++||-.|+|..+.|++||+-. . +=+..++....|
T Consensus 37 f~~CF~L~E~RsGeICNACVLLVKRwKKLP~Gs--~-rnW~HVVDARaG 82 (213)
T PF15396_consen 37 FMSCFGLHETRSGEICNACVLLVKRWKKLPPGS--K-RNWNHVVDARAG 82 (213)
T ss_pred HHHhhccCCcccchhhHHHHHHHHHHhhCCCCc--c-cchhHHhhhccC
Confidence 456666666778999999999999999999876 3 445666655443
No 130
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=27.70 E-value=2e+02 Score=26.17 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCCEEEec
Q psy16535 25 RRQALDRGAAMLGVDCVATG 44 (333)
Q Consensus 25 r~~~L~~~~~~~g~~~Ia~~ 44 (333)
....+..+++..|+....+.
T Consensus 44 ~~~~~~~~A~~lgip~~~i~ 63 (218)
T TIGR03679 44 NIELTRLQAEALGIPLVKIE 63 (218)
T ss_pred CHHHHHHHHHHhCCCEEEEE
Confidence 34566677777777765543
No 131
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.97 E-value=1.8e+02 Score=26.44 Aligned_cols=88 Identities=18% Similarity=0.283 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCEEE--eccCCCCCCc--HHHHHHHHHHh-hchhcccccc-hhh----------hcCC-
Q psy16535 18 CTFCGVFRRQALDRGAAMLGVDCVA--TGHNADDTDD--IAETVLMNVLR-GDIARLQRCT-DII----------TIGR- 80 (333)
Q Consensus 18 ~~~~~~~r~~~L~~~~~~~g~~~Ia--~~H~ld~~~D--~~Etfv~nl~r-g~i~~l~~~~-~v~----------~~~~- 80 (333)
|+.|..- +|..+.+. |++.+. .+-|..+.+. .=-..+..+|. .+|++.-+.. +.. ....
T Consensus 12 CAPcs~y---~le~l~~~-~~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~iegdY~~~~~w~~~vKg~E~EpE~ 87 (204)
T COG1636 12 CAPCSGY---VLEKLRDS-GIKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINFIEGDYEDLEKWFERVKGMEDEPEG 87 (204)
T ss_pred cCCCcHH---HHHHHHhc-CcceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCeeeecCcccHHHHHHHhhcchhCCCC
Confidence 6666654 56666655 666533 3444443101 11122334455 4555544332 211 1111
Q ss_pred CccchhhhhHHHHHHHHHhHhccccEEEc
Q psy16535 81 KNNCTFCGVFRRQALDRGAAMLGVDCVAT 109 (333)
Q Consensus 81 ~~~~~~cr~~Rr~~l~~~a~~~g~~~ia~ 109 (333)
.--|..|=.+|.+.-.++|.++|.+++.+
T Consensus 88 G~RC~~Cfd~Rle~tA~~A~e~G~d~ftt 116 (204)
T COG1636 88 GKRCTMCFDMRLEKTAKKAKELGFDVFTT 116 (204)
T ss_pred CchhHhHHHHHHHHHHHHHHHcCCchhhh
Confidence 12699999999999999999999986654
No 132
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=26.54 E-value=2.3e+02 Score=25.73 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=47.3
Q ss_pred HHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCccccccCCccccccCHHHHHHHHHHcCCCceecCC
Q psy16535 92 RQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIITYAYEKEIVMYAYYKKLVYFSTEC 163 (333)
Q Consensus 92 r~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR~i~k~EI~~y~~~~~l~~~~D~~ 163 (333)
+..+.+++++ |++.|++|.+.+|..-+...++.... ++.-..|++ ..++.|+..-+...|+....-..
T Consensus 76 ~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~v~~~~--gl~~~~PLw-~~~~~el~~~~~~~G~~~~i~~v 143 (218)
T TIGR03679 76 KGALKELKRE-GVEGIVTGAIASRYQKSRIERICEEL--GLKVFAPLW-GRDQEEYLRELVERGFRFIIVSV 143 (218)
T ss_pred HHHHHHHHHc-CCCEEEECCcccHhHHHHHHHHHHhC--CCeEEeehh-cCCHHHHHHHHHHCCCEEEEEEE
Confidence 4555665555 99999999999997766666666542 222111222 68899999999999999766333
No 133
>PRK13980 NAD synthetase; Provisional
Probab=26.20 E-value=70 Score=29.95 Aligned_cols=30 Identities=17% Similarity=-0.092 Sum_probs=25.6
Q ss_pred chHhhHHHHHHHHHHHHHHHhcCCCEEEec
Q psy16535 15 KNNCTFCGVFRRQALDRGAAMLGVDCVATG 44 (333)
Q Consensus 15 ~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~ 44 (333)
...|..|.++|+.+|..++++.|+-++.++
T Consensus 110 ~~~~n~~aR~R~~~L~~~A~~~g~lvlgTg 139 (265)
T PRK13980 110 LRVGNIMARTRMVLLYDYANRENRLVLGTG 139 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCCEEEcCC
Confidence 357999999999999999999997666664
No 134
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=25.83 E-value=70 Score=29.26 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=30.6
Q ss_pred ccchhhhhHHHHHHHHHhHhccccEEEcccCCcchH
Q psy16535 82 NNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIA 117 (333)
Q Consensus 82 ~~~~~cr~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ 117 (333)
.|+..+..+....+.+.+++.|+..+.+||..|+..
T Consensus 95 ~p~~~~~~~~~~~l~~~a~~~~~~v~l~G~g~Delf 130 (269)
T cd01991 95 EPFADSSAIPLYLLSRLARKHGIKVVLSGEGADELF 130 (269)
T ss_pred CCCCCcHHHHHHHHHHHHHHhCCEEEEecCCccccc
Confidence 466666677888999999999999999999999953
No 135
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=24.27 E-value=5e+02 Score=22.91 Aligned_cols=121 Identities=19% Similarity=0.129 Sum_probs=63.0
Q ss_pred HHHHHHhc--CCCEEEeccCCCCCCcHHHH--HHHHHHh-hchhcccccchh---h----hcCC----Cc-cchhhhhHH
Q psy16535 29 LDRGAAML--GVDCVATGHNADDTDDIAET--VLMNVLR-GDIARLQRCTDI---I----TIGR----KN-NCTFCGVFR 91 (333)
Q Consensus 29 L~~~~~~~--g~~~Ia~~H~ld~~~D~~Et--fv~nl~r-g~i~~l~~~~~v---~----~~~~----~~-~~~~cr~~R 91 (333)
|.+++.+. .+.++.++.+.. ..|| |+..+.+ .++.......+. . ..+. +. +-.-|...+
T Consensus 8 ll~L~~~~~~~~~vifvDTg~~----FpET~~~~d~~~~~~~l~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~cc~~~K 83 (191)
T TIGR02055 8 LVDLAAKVRPDVKVFFLDTGRL----FKETYETIDQVRERYDILIDVLSPPPLTVEEQVKEYGLNLFYRSVPHECCGIRK 83 (191)
T ss_pred HHHHHHhcCCCCcEEEecCCCC----CHHHHHHHHHHHHHhCCceEEEcCCcccHHHHHHHcCcccccccchHHHHHHHh
Confidence 44555443 356666644443 4555 8888887 655432221111 0 1111 11 222355555
Q ss_pred HHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCccccccCCcccc-----ccCHHHHHHHHHHcCCCcee
Q psy16535 92 RQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT-----YAYEKEIVMYAYYKKLVYFS 160 (333)
Q Consensus 92 r~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR-----~i~k~EI~~y~~~~~l~~~~ 160 (333)
-.=|.++.++ .+.+.+|--.++-.....+..+.. .....+++ ..+..||-.|...+|||+-.
T Consensus 84 ~~Pl~~~l~~--~~~~i~G~Rr~Es~~R~~~~~~~~-----~~~~~~~~~~Pi~~Wt~~dVw~Yi~~~~lp~np 150 (191)
T TIGR02055 84 VEPLKRALAG--VSAWITGLRRDQSPTRAQAPFLEI-----DEAFGLVKINPLADWTSEDVWEYIADNELPYNP 150 (191)
T ss_pred HHHHHHHHhc--CCEEEEEeccccCchhcCCceeee-----cCCCCeEEEEecccCCHHHHHHHHHHcCCCCCh
Confidence 6667777664 456667777776322111111111 00111333 89999999999999999854
No 136
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=23.27 E-value=3.2e+02 Score=21.48 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=16.9
Q ss_pred ccCHHHHHHHHHHcCCCc
Q psy16535 141 YAYEKEIVMYAYYKKLVY 158 (333)
Q Consensus 141 ~i~k~EI~~y~~~~~l~~ 158 (333)
.+|-+|+..||+++|+|.
T Consensus 14 ~iT~~eLlkyskqy~i~i 31 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISI 31 (85)
T ss_pred cCCHHHHHHHHHHhCCCC
Confidence 789999999999999986
No 137
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=22.51 E-value=1.2e+02 Score=23.99 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=29.2
Q ss_pred HHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcc
Q psy16535 92 RQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIA 130 (333)
Q Consensus 92 r~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~ 130 (333)
.+.+.+++++++++.|..|+|..- .+.+++.|+..
T Consensus 74 ~~~I~~~~~~~~~dllviG~~~~~----~~~~~~~Gs~~ 108 (124)
T cd01987 74 AEAIVEFAREHNVTQIVVGKSRRS----RWRELFRGSLV 108 (124)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCc----hHHHHhcccHH
Confidence 477889999999999999999874 77788888753
No 138
>PF02132 RecR: RecR protein; InterPro: IPR023628 The bacterial protein RecR seems to play a role in a recombinational process of DNA repair []. It may act with RecF and RecO. RecR's structure consists of a N-terminal helix-hairpin-helix (HhH) motif, followed by a Cys4 zinc-finger motif, a Toprim domain and a Walker B motif []. This entry represents the C4-type zinc finger.; PDB: 1VDD_D 2V1C_B.
Probab=22.03 E-value=60 Score=21.54 Aligned_cols=20 Identities=40% Similarity=0.999 Sum_probs=12.6
Q ss_pred hhhhhhhcCcchhhhhhHHh
Q psy16535 210 REVCELCGFLSSQKICKACS 229 (333)
Q Consensus 210 ~~~~~~~g~~~~~~ic~~c~ 229 (333)
...|..||..+..++|..|.
T Consensus 17 i~~C~~C~nlse~~~C~IC~ 36 (41)
T PF02132_consen 17 IKFCSICGNLSEEDPCEICS 36 (41)
T ss_dssp -EE-SSS--EESSSS-HHHH
T ss_pred CCccCCCCCcCCCCcCcCCC
Confidence 47899999988888998875
No 139
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=21.59 E-value=75 Score=25.73 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=19.5
Q ss_pred ccCHHHHHHHHHHcCCCceecCCC
Q psy16535 141 YAYEKEIVMYAYYKKLVYFSTECI 164 (333)
Q Consensus 141 ~i~k~EI~~y~~~~~l~~~~D~~n 164 (333)
+-++++=+.||+.+|++|...+-+
T Consensus 55 F~skE~Ai~yaer~G~~Y~V~~p~ 78 (101)
T PF04800_consen 55 FDSKEDAIAYAERNGWDYEVEEPK 78 (101)
T ss_dssp ESSHHHHHHHHHHCT-EEEEE-ST
T ss_pred eCCHHHHHHHHHHcCCeEEEeCCC
Confidence 779999999999999999876544
Done!