Query psy16535
Match_columns 333
No_of_seqs 261 out of 2575
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 23:45:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16535.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16535hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2k_A TRNA(Ile)-lysidine synt 100.0 4.8E-35 1.6E-39 293.3 22.4 272 16-297 28-328 (464)
2 1wy5_A TILS, hypothetical UPF0 100.0 7.7E-34 2.6E-38 271.3 17.5 249 29-296 44-314 (317)
3 1ni5_A Putative cell cycle pro 100.0 8.4E-33 2.9E-37 274.9 20.0 264 16-296 23-311 (433)
4 3k32_A Uncharacterized protein 99.4 3.9E-13 1.4E-17 120.1 5.2 139 32-179 25-178 (203)
5 2der_A TRNA-specific 2-thiouri 99.1 2.1E-11 7.2E-16 119.0 1.4 156 32-187 36-231 (380)
6 3a2k_A TRNA(Ile)-lysidine synt 99.0 1.3E-10 4.4E-15 116.1 5.5 110 14-133 96-211 (464)
7 2hma_A Probable tRNA (5-methyl 99.0 5.5E-11 1.9E-15 115.9 0.4 156 32-187 28-223 (376)
8 1wy5_A TILS, hypothetical UPF0 99.0 3.6E-10 1.2E-14 107.4 5.4 107 14-130 102-209 (317)
9 2c5s_A THII, probable thiamine 98.9 1.9E-09 6.6E-14 106.1 9.5 162 32-198 206-391 (413)
10 1ni5_A Putative cell cycle pro 98.8 8.9E-10 3E-14 109.2 2.6 106 13-130 86-196 (433)
11 3tqi_A GMP synthase [glutamine 98.8 2.8E-09 9.6E-14 108.1 5.8 129 37-166 255-408 (527)
12 3bl5_A Queuosine biosynthesis 98.8 1.7E-08 5.8E-13 89.7 10.2 122 34-157 24-176 (219)
13 2dpl_A GMP synthetase, GMP syn 98.8 5.6E-08 1.9E-12 92.1 12.8 120 37-159 45-181 (308)
14 2pg3_A Queuosine biosynthesis 98.4 6.1E-07 2.1E-11 80.9 8.4 123 34-158 23-181 (232)
15 2ywb_A GMP synthase [glutamine 98.3 1.4E-06 4.6E-11 87.9 10.1 126 32-159 228-374 (503)
16 1sur_A PAPS reductase; assimil 98.3 3.4E-07 1.2E-11 81.7 4.2 117 37-160 70-202 (215)
17 1kor_A Argininosuccinate synth 98.2 2.9E-06 9.8E-11 83.2 9.5 122 35-166 23-173 (400)
18 1zun_A Sulfate adenylyltransfe 98.2 2.1E-06 7E-11 82.0 6.5 122 37-160 76-226 (325)
19 1k92_A Argininosuccinate synth 98.1 5.2E-06 1.8E-10 82.5 9.1 133 29-166 26-191 (455)
20 2vxo_A GMP synthase [glutamine 98.1 6E-06 2.1E-10 86.2 8.6 76 91-166 348-443 (697)
21 2nz2_A Argininosuccinate synth 98.1 9.8E-06 3.3E-10 79.7 9.2 129 32-166 24-181 (413)
22 1gpm_A GMP synthetase, XMP ami 98.1 6.5E-06 2.2E-10 83.3 7.9 120 37-158 252-395 (525)
23 2o8v_A Phosphoadenosine phosph 97.9 4.9E-06 1.7E-10 76.3 3.5 117 37-160 71-203 (252)
24 3p52_A NH(3)-dependent NAD(+) 97.7 0.00011 3.9E-09 67.3 8.3 115 36-161 50-181 (249)
25 2oq2_A Phosphoadenosine phosph 97.6 4.7E-05 1.6E-09 70.1 5.4 115 37-160 70-208 (261)
26 3uow_A GMP synthetase; structu 97.5 0.00018 6.2E-09 73.3 8.6 131 35-166 278-437 (556)
27 3k32_A Uncharacterized protein 97.5 2.9E-05 9.8E-10 68.8 1.7 97 17-129 83-181 (203)
28 1xng_A NH(3)-dependent NAD(+) 97.3 0.00093 3.2E-08 61.4 10.1 114 40-164 55-182 (268)
29 2e18_A NH(3)-dependent NAD(+) 97.2 0.00025 8.5E-09 64.8 4.8 106 40-158 53-172 (257)
30 3fiu_A NH(3)-dependent NAD(+) 97.1 0.0033 1.1E-07 57.4 11.5 117 32-160 48-189 (249)
31 1vbk_A Hypothetical protein PH 97.0 0.0016 5.3E-08 61.4 7.8 113 24-156 189-307 (307)
32 2goy_A Adenosine phosphosulfat 97.0 0.00068 2.3E-08 62.8 5.1 119 37-160 79-217 (275)
33 2c5s_A THII, probable thiamine 96.6 0.0027 9.1E-08 62.2 6.2 75 16-105 269-344 (413)
34 1vl2_A Argininosuccinate synth 96.5 0.0074 2.5E-07 59.3 9.0 79 85-166 102-190 (421)
35 2dpl_A GMP synthetase, GMP syn 96.1 0.0056 1.9E-07 57.5 5.3 77 17-106 100-180 (308)
36 2der_A TRNA-specific 2-thiouri 95.6 0.0011 3.8E-08 64.3 -1.6 93 15-114 108-209 (380)
37 3tqi_A GMP synthase [glutamine 95.5 0.0027 9.1E-08 64.2 0.6 84 16-106 309-397 (527)
38 3bl5_A Queuosine biosynthesis 95.0 0.025 8.7E-07 49.3 5.1 78 15-104 90-175 (219)
39 2hma_A Probable tRNA (5-methyl 94.7 0.0015 5.2E-08 63.2 -4.0 88 15-108 100-195 (376)
40 2ywb_A GMP synthase [glutamine 92.7 0.058 2E-06 53.9 3.2 84 17-105 287-372 (503)
41 1gpm_A GMP synthetase, XMP ami 89.5 0.12 4.3E-06 51.8 2.0 81 17-105 307-394 (525)
42 1kor_A Argininosuccinate synth 89.3 0.63 2.2E-05 45.2 6.8 76 19-109 89-167 (400)
43 2pg3_A Queuosine biosynthesis 87.6 0.23 8E-06 43.9 2.3 35 15-49 93-128 (232)
44 2nz2_A Argininosuccinate synth 87.5 0.89 3E-05 44.3 6.5 81 21-111 95-177 (413)
45 2wsi_A FAD synthetase; transfe 84.9 3.7 0.00013 38.1 9.1 103 38-160 102-215 (306)
46 1k92_A Argininosuccinate synth 84.4 2.7 9.1E-05 41.5 8.2 85 17-109 101-185 (455)
47 1sur_A PAPS reductase; assimil 79.4 0.36 1.2E-05 42.2 -0.2 73 18-106 128-200 (215)
48 3p52_A NH(3)-dependent NAD(+) 74.7 1.4 4.6E-05 39.9 2.3 70 15-105 105-175 (249)
49 1wxi_A NH(3)-dependent NAD(+) 66.7 4.8 0.00017 36.7 4.2 60 89-157 140-202 (275)
50 2vxo_A GMP synthase [glutamine 66.2 4.1 0.00014 42.4 3.9 78 25-106 348-434 (697)
51 3dpi_A NAD+ synthetase; ssgcid 65.9 5 0.00017 37.1 4.1 67 84-157 144-211 (285)
52 1kqp_A NAD+ synthase, NH(3)-de 64.4 5.6 0.00019 36.1 4.1 60 89-157 137-199 (271)
53 2e18_A NH(3)-dependent NAD(+) 62.9 4.1 0.00014 36.4 2.9 33 16-48 102-134 (257)
54 3uow_A GMP synthetase; structu 62.6 3.2 0.00011 41.9 2.2 85 17-105 336-425 (556)
55 2o8v_A Phosphoadenosine phosph 61.7 2.4 8.2E-05 38.1 1.0 74 17-106 128-201 (252)
56 3fiu_A NH(3)-dependent NAD(+) 55.6 4.9 0.00017 36.1 2.0 31 15-45 109-144 (249)
57 1xng_A NH(3)-dependent NAD(+) 55.1 7 0.00024 35.2 3.0 70 16-105 105-174 (268)
58 3q4g_A NH(3)-dependent NAD(+) 51.3 18 0.00061 33.1 5.1 65 84-157 144-211 (279)
59 3ilv_A Glutamine-dependent NAD 48.6 42 0.0014 34.1 7.9 113 26-157 386-505 (634)
60 1zun_A Sulfate adenylyltransfe 47.1 12 0.00042 34.9 3.4 33 17-49 126-158 (325)
61 1vl2_A Argininosuccinate synth 42.3 47 0.0016 32.3 6.7 81 18-107 101-182 (421)
62 1vbk_A Hypothetical protein PH 36.2 23 0.00078 32.7 3.3 19 31-49 249-267 (307)
63 3n05_A NH(3)-dependent NAD(+) 32.5 35 0.0012 34.3 4.2 59 88-155 412-473 (590)
64 2oq2_A Phosphoadenosine phosph 32.3 32 0.0011 30.7 3.5 77 17-107 131-207 (261)
65 2jya_A AGR_C_3324P, uncharacte 23.3 45 0.0015 26.1 2.4 23 141-163 58-80 (106)
No 1
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=100.00 E-value=4.8e-35 Score=293.31 Aligned_cols=272 Identities=15% Similarity=0.065 Sum_probs=217.3
Q ss_pred hHhhHHHHHHHHHHHHHHHhcCCC--EEEeccCCC-CCCcHHHHHHHHHHh-hchhcccccchhhh---cCCCccchhhh
Q psy16535 16 NNCTFCGVFRRQALDRGAAMLGVD--CVATGHNAD-DTDDIAETVLMNVLR-GDIARLQRCTDIIT---IGRKNNCTFCG 88 (333)
Q Consensus 16 ~~~~~~~~~r~~~L~~~~~~~g~~--~Ia~~H~ld-~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~---~~~~~~~~~cr 88 (333)
+..|.+... +|.++....|++ +++++|+++ .+|+.++.++..+|+ .++|+.+...++.. ..+.++|.+||
T Consensus 28 G~DS~~Ll~---ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR 104 (464)
T 3a2k_A 28 GPDSLALLH---VFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAAR 104 (464)
T ss_dssp SHHHHHHHH---HHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHTTTTCCSHHHHH
T ss_pred cHHHHHHHH---HHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEEEEechhhhhhccCCCHHHHHH
Confidence 455555443 555555556655 556789988 567889999999999 88998776655443 22346899999
Q ss_pred hHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcc-ccccC--------Ccccc---ccCHHHHHHHHHHcCC
Q psy16535 89 VFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIA-RLQRC--------TDIIT---YAYEKEIVMYAYYKKL 156 (333)
Q Consensus 89 ~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~-~L~~~--------~~iiR---~i~k~EI~~y~~~~~l 156 (333)
.+||.+|.++|+++|+++|+||||+||++||+|||++||+|. ||.+| +.++| .++|+||.+||+.+|+
T Consensus 105 ~~Ry~~l~~~a~~~g~~~IatgH~~dD~aEt~L~~l~rG~g~~gL~gm~~~~~~~~~~iiRPLl~~~k~eI~~ya~~~gl 184 (464)
T 3a2k_A 105 ICRYRFFAELMEKHQAGYVAVGHHGDDQVETILMRLVRGSTSKGYAGIPVKRPFHGGYLIRPFLAVSRAEIEAYCRQMGL 184 (464)
T ss_dssp HHHHHHHHHHHHTTTCCEEECCCCHHHHHHHHHHHHHHCCCSSSTTCSCSEEECSSSEEECGGGGSCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCcCEEEEeCChHHHHHHHHHHHHcCCCcccccCCCccccCCCCEEECCCccCcHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999985 67765 34677 8999999999999999
Q ss_pred CceecCCCCCCchhHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHhccCCCc-hhhhhhhc-CcchhhhhhHHhhHHH
Q psy16535 157 VYFSTECIFAPNAYRGHART-FLKHLEKIRPASIMDIIHSGEQMAIKEGVKLPN-REVCELCG-FLSSQKICKACSLLEG 233 (333)
Q Consensus 157 ~~~~D~~n~~~~~~Rn~iR~-~lp~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~ic~~c~l~~~ 233 (333)
||++|+||++..|.||+||+ ++|.|++.||++..+++++++.+++++++++.. ......+. ... +. ..++..
T Consensus 185 ~~~~d~sn~~~~~~Rn~iR~~~lp~L~~~~p~~~~~l~r~a~~~~~~~~~l~~~~~~~~~~~~~~~~-~~----~~l~~~ 259 (464)
T 3a2k_A 185 SPRCDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDEQFLEELAADALNKVMEKQH-RD----AALSIG 259 (464)
T ss_dssp SSCSCTTCCCTTSHHHHHHHTHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECSS-SS----CEECHH
T ss_pred CeEECCCCCCccchHHHHHHHHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-Cc----EEEEHH
Confidence 99999999999999999998 999999999999999999999999988775532 22222221 111 11 134455
Q ss_pred HhccCCcccccHHHHHHHHHHhhcCC-CCCCChHHHHHHHHHhhCCC-CCeeecCC-----cccceeeeec
Q psy16535 234 LNKGLPKLSLSKRSVQDRIRQENYSK-VQSITGYRDDSLETVKQNKE-DYQMDLKI-----LSYDELYGWT 297 (333)
Q Consensus 234 ~~~~l~~~~~~~~r~i~~~l~~~~~~-~~~~s~~hi~~i~~ll~~~~-g~~i~Lp~-----~~y~~l~~~~ 297 (333)
.+..+|+++ |+++|+.||....+. ...++..|+++|.+++.++. +++++||. +.|+.++++.
T Consensus 260 ~l~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 328 (464)
T 3a2k_A 260 PFLELPRPL--QRRVLQLLLLRLYGGVPPTLTSVHIGHILMLCERGRPSGMIDLPKGLKVIRSYDRCLFTF 328 (464)
T ss_dssp HHHHSCHHH--HHHHHHHHHHHTTSCCTTCCHHHHHHHHHHHHHCSCSEEEEECSTTCEEEEETTEEEEES
T ss_pred HHhcCCHHH--HHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCCCEEEEEECCEEEEEe
Confidence 567889999 999999999887543 46799999999999997653 57899994 6899988853
No 2
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=100.00 E-value=7.7e-34 Score=271.34 Aligned_cols=249 Identities=16% Similarity=0.128 Sum_probs=199.6
Q ss_pred HHHHHHhcCCC---EEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhhhc---CCCccchhhhhHHHHHHHHHhHh
Q psy16535 29 LDRGAAMLGVD---CVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIITI---GRKNNCTFCGVFRRQALDRGAAM 101 (333)
Q Consensus 29 L~~~~~~~g~~---~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~~---~~~~~~~~cr~~Rr~~l~~~a~~ 101 (333)
|.++.+..|++ +++++|+++++++.++.++..+|+ .++|+.....++... .+.++|..||.+||.+|.++|++
T Consensus 44 l~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lgi~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~ 123 (317)
T 1wy5_A 44 LLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILES 123 (317)
T ss_dssp HHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33333345666 455788888667889999999999 888877655544322 23568999999999999999999
Q ss_pred ccccEEEcccCCcchHHHHHHHHHhcCcc-ccccCC----cccc---ccCHHHHHHHHHHcCCCceecCCCCCCchhHHH
Q psy16535 102 LGVDCVATGHNADDIAETVLMNVLRGDIA-RLQRCT----DIIT---YAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGH 173 (333)
Q Consensus 102 ~g~~~ia~aH~~dD~~ET~l~nl~rg~~~-~L~~~~----~iiR---~i~k~EI~~y~~~~~l~~~~D~~n~~~~~~Rn~ 173 (333)
.|+++|+||||+||++||+++|++||+|. ||.++. .++| .++|+||.+||+.+|+||++|+||.+..|.||+
T Consensus 124 ~g~~~i~~Gh~~dD~~Et~l~~l~rg~g~~gl~~~~~~~~~iirPLl~~~k~eI~~~~~~~gl~~~~d~sn~~~~~~Rn~ 203 (317)
T 1wy5_A 124 EGFDCIATAHHLNDLLETSLLFFTRGTGLDGLIGFLPKEEVIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYEVSIPRNR 203 (317)
T ss_dssp TTCSEEECCCCHHHHHHHHHHHHHHCCCHHHHHCSCSEETTEECTTTTCCHHHHHHHHHHTTCCCCCCGGGGTCCHHHHH
T ss_pred cCCCEEEEeCchhHHHHHHHHHHHhCCCcccccCCCCCCCeEECCCccCCHHHHHHHHHHcCCCeeECCCCCCCccHHHH
Confidence 99999999999999999999999999985 677653 5777 899999999999999999999999999999999
Q ss_pred HHH-HHHHHHHHCCCHHHHHHHHHHHHHHHhccCCCc-hhhhhhhcCcchhhhhhHHhhHHHHhccCCcccccHHHHHHH
Q psy16535 174 ART-FLKHLEKIRPASIMDIIHSGEQMAIKEGVKLPN-REVCELCGFLSSQKICKACSLLEGLNKGLPKLSLSKRSVQDR 251 (333)
Q Consensus 174 iR~-~lp~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~ic~~c~l~~~~~~~l~~~~~~~~r~i~~ 251 (333)
||+ ++|.|++.||++..+++++++.++++.++++.. ......+.. . ..++...+..+|+++ |+++|+.
T Consensus 204 iR~~~lp~L~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~----~----~~l~~~~l~~~~~~~--~~~~l~~ 273 (317)
T 1wy5_A 204 IRHRVIPELKRINENLEDTFLKMVKVLRAEREFLEEEAQKLYKEVKK----G----NCLDVKKLKEKPLAL--QRRVIRK 273 (317)
T ss_dssp HHHTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE----T----TEECHHHHTTSCHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----C----cEEcHHHHhcCCHHH--HHHHHHH
Confidence 999 999999999999999999999999988765432 222222210 0 124455668889999 9999999
Q ss_pred HHHhhcCCCCCCChHHHHHHHHHhhCCCCCeeecCC-----cccceeeee
Q psy16535 252 IRQENYSKVQSITGYRDDSLETVKQNKEDYQMDLKI-----LSYDELYGW 296 (333)
Q Consensus 252 ~l~~~~~~~~~~s~~hi~~i~~ll~~~~g~~i~Lp~-----~~y~~l~~~ 296 (333)
|+... +..|+++|.+++.+ +++++||+ +.|+.+++.
T Consensus 274 ~l~~~-------~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~l~~~ 314 (317)
T 1wy5_A 274 FIGEK-------DYEKVELVRSLLEK--GGEVNLGKGKVLKRKERWLCFS 314 (317)
T ss_dssp HHTCC-------CHHHHHHHHGGGTS--CCEEESSSEEEEETTEEBC---
T ss_pred HHHHC-------CHHHHHHHHHHHhc--CCEEEcCCCEEEEEECCEEEEE
Confidence 99542 89999999998877 67999995 567777764
No 3
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=100.00 E-value=8.4e-33 Score=274.86 Aligned_cols=264 Identities=16% Similarity=0.072 Sum_probs=205.3
Q ss_pred hHhhHHHHHHHHHHHHHHHh-cCCC--EEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhhhcCCCccchhhhhHH
Q psy16535 16 NNCTFCGVFRRQALDRGAAM-LGVD--CVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIITIGRKNNCTFCGVFR 91 (333)
Q Consensus 16 ~~~~~~~~~r~~~L~~~~~~-~g~~--~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~~~~~~~~~~cr~~R 91 (333)
+..|.+... +|.++..+ .|++ +++++|++++++|.++.++..+|. .++|+.+...++. ..+.++|..||.+|
T Consensus 23 G~DS~~Ll~---ll~~~~~~~~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~~~~~-~~~~~~e~~aR~~R 98 (433)
T 1ni5_A 23 GLDSTVLLH---QLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLA-QEGLGIEAQARQAR 98 (433)
T ss_dssp BHHHHHHHH---HHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEECCCCC-CSSSTTTTHHHHHH
T ss_pred hHHHHHHHH---HHHHHHHhcCCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEEecCC-CCCCCHHHHHHHHH
Confidence 355555433 45555544 5655 455789998778889999999999 8899876655543 22356899999999
Q ss_pred HHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcc-ccccCC--------cccc---ccCHHHHHHHHHHcCCCce
Q psy16535 92 RQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIA-RLQRCT--------DIIT---YAYEKEIVMYAYYKKLVYF 159 (333)
Q Consensus 92 r~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~-~L~~~~--------~iiR---~i~k~EI~~y~~~~~l~~~ 159 (333)
|.+|.++|++ +++|+||||+||++||+|||++||+|. ||.+|. .++| .++|+||.+||+.+|+||+
T Consensus 99 y~~l~~~a~~--~~~i~tgH~~dD~aEt~L~~l~RG~g~~gL~gm~~~~~~~~~~iiRPLl~~~k~eI~~y~~~~gl~~~ 176 (433)
T 1ni5_A 99 YQAFARTLLP--GEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRWI 176 (433)
T ss_dssp HHHHHHTCCT--TEEEECCCCHHHHHHHHHHHHTTTCCTTGGGCCCSEEEETTEEEECGGGSCCHHHHHHHHHHTTCCCB
T ss_pred HHHHHHHHhh--CCeEEeeccchHHHHHHHHHHHcCCCcccccCCCCccccCCceEEccCccCCHHHHHHHHHHcCCCeE
Confidence 9999999974 899999999999999999999999986 677653 3667 8999999999999999999
Q ss_pred ecCCCCCCchhHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHhccCCC-chhhhhhhcCcchhhhhhHHhhHHHHhcc
Q psy16535 160 STECIFAPNAYRGHART-FLKHLEKIRPASIMDIIHSGEQMAIKEGVKLP-NREVCELCGFLSSQKICKACSLLEGLNKG 237 (333)
Q Consensus 160 ~D~~n~~~~~~Rn~iR~-~lp~l~~~~p~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~ic~~c~l~~~~~~~ 237 (333)
+|+||++..|.||+||+ ++|.|++.||++..+++++++.++++.++++. .......+..... .++...+..
T Consensus 177 ~D~sn~~~~~~Rn~iR~~~lp~L~~~~p~~~~~l~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~l~~~~l~~ 249 (433)
T 1ni5_A 177 EDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQSPQG-------TLQIVPMLA 249 (433)
T ss_dssp CCCCGGGTTSHHHHHHHTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSS-------CEESGGGTT
T ss_pred ECCCCCCcccchHHHHHHHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------eEcHHHHhc
Confidence 99999999999999997 99999999999999999999999998877543 2222233321111 233445678
Q ss_pred CCcccccHHHHHHHHHHhhcCCCCCCChHHHHHHHH-HhhCCCC--CeeecCC---ccc-ceeeee
Q psy16535 238 LPKLSLSKRSVQDRIRQENYSKVQSITGYRDDSLET-VKQNKED--YQMDLKI---LSY-DELYGW 296 (333)
Q Consensus 238 l~~~~~~~~r~i~~~l~~~~~~~~~~s~~hi~~i~~-ll~~~~g--~~i~Lp~---~~y-~~l~~~ 296 (333)
+|+++ |+++|++|+..... ..++..|+++|.. ++..+.| ..+.+++ +.| +.+++.
T Consensus 250 ~~~~~--~~~~l~~~l~~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 311 (433)
T 1ni5_A 250 MSDAR--RAAIIRRWLAGQNA--PMPSRDALVRIWQEVALAREDASPCLRLGAFEIRRYQSQLWWI 311 (433)
T ss_dssp SCHHH--HHHHHHHHHHHTTC--CCCCHHHHHHHHHHTTTSCGGGCCEEEETTEEEEESSSEEEEE
T ss_pred CCHHH--HHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHhcCCCCCceEEcCCEEEEEECCEEEEE
Confidence 89999 99999999988743 4689999999987 6655543 5788885 334 355543
No 4
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=99.36 E-value=3.9e-13 Score=120.11 Aligned_cols=139 Identities=14% Similarity=0.001 Sum_probs=92.1
Q ss_pred HHHhcCCCEEE--eccCCCCCCcHHHHHHHHHHh-hchhcccccchhhh-------cC-CCccchhhhhHHHHHHHHHhH
Q psy16535 32 GAAMLGVDCVA--TGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIIT-------IG-RKNNCTFCGVFRRQALDRGAA 100 (333)
Q Consensus 32 ~~~~~g~~~Ia--~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~-------~~-~~~~~~~cr~~Rr~~l~~~a~ 100 (333)
++.+.|+++++ ++|+..+ +..++..+|. .++|......+... .. ...++..|...||.+|.++|+
T Consensus 25 ll~~~g~~v~~~~v~~~~~~----~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~l~~~A~ 100 (203)
T 3k32_A 25 ILKKLGYNPHLITINFGVIP----SYKLAEETAKILGFKHKVITLDRKIVEKAADMIIEHKYPGPAIQYVHKTVLEILAD 100 (203)
T ss_dssp HHHHTTEEEEEEEEECSSSC----TTHHHHHHHHHHTCEEEEEECCTHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCeEEEEEeCCCch----HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhc
Confidence 34456665544 5677663 4578888998 77876544332210 00 122566677788889998888
Q ss_pred hccccEEEcccCCcchHHHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcCCCceecCCCCCCch-hHHHHHH
Q psy16535 101 MLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKKLVYFSTECIFAPNA-YRGHART 176 (333)
Q Consensus 101 ~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~l~~~~D~~n~~~~~-~Rn~iR~ 176 (333)
|+++|+||||+||++||+.+.-+++-.. .....++| .++|+||.+||+++ ++|.+|+||.++.+ .+..||+
T Consensus 101 --g~~~i~tGh~~dD~~et~~~~gl~~~~~--~~~~~iirPLl~~~k~eI~~~a~~~-l~~~~~~sn~~~~~dy~~~~r~ 175 (203)
T 3k32_A 101 --EYSILADGTRRDDRVPKLSYSEIQSLEM--RKNIQYITPLMGFGYKTLRHLASEF-FILEEIKSGTKLSSDYEAEIRH 175 (203)
T ss_dssp --TCSEEECCCCTTCCSSCCCHHHHHHHHH--HHTCEEECGGGGCCHHHHHHHHHHH-EEEEEECC------CTHHHHHH
T ss_pred --CCCEEEECCCcccchhhcchhhccCccc--ccCCeEEeccCCCCHHHHHHHHHHh-CCcccCCCCCCCCCcHHHHHHH
Confidence 9999999999999999987644333111 01235677 89999999999999 99999999976543 3477776
Q ss_pred HHH
Q psy16535 177 FLK 179 (333)
Q Consensus 177 ~lp 179 (333)
.|.
T Consensus 176 ~l~ 178 (203)
T 3k32_A 176 ILK 178 (203)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
No 5
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=99.07 E-value=2.1e-11 Score=119.02 Aligned_cols=156 Identities=18% Similarity=0.066 Sum_probs=99.9
Q ss_pred HHHhcCCCEEEe--ccCCCC------CCcHHHHHHHHHHh-hchhcccccch-----------hhhc---CCCccchhhh
Q psy16535 32 GAAMLGVDCVAT--GHNADD------TDDIAETVLMNVLR-GDIARLQRCTD-----------IITI---GRKNNCTFCG 88 (333)
Q Consensus 32 ~~~~~g~~~Ia~--~H~ld~------~~D~~Etfv~nl~r-g~i~~l~~~~~-----------v~~~---~~~~~~~~cr 88 (333)
++.+.|++++++ .|..+. .++.+...+..+|. -++|....... +.++ ...+||..|+
T Consensus 36 lL~~~G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp~~vvd~~~~f~~~v~~~~~~ey~~G~tpnpc~~Cn 115 (380)
T 2der_A 36 LLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCN 115 (380)
T ss_dssp HHHTTCCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHcCCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCcEEEEeCcHHHHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 344558887765 344432 13467788999999 77886543322 1121 1246999998
Q ss_pred h-HHHHHHHHHhHh-ccccEEEcccCCcchHHHHHHHHHhcCcc-c-----cccC-----Ccccc---ccCHHHHHHHHH
Q psy16535 89 V-FRRQALDRGAAM-LGVDCVATGHNADDIAETVLMNVLRGDIA-R-----LQRC-----TDIIT---YAYEKEIVMYAY 152 (333)
Q Consensus 89 ~-~Rr~~l~~~a~~-~g~~~ia~aH~~dD~~ET~l~nl~rg~~~-~-----L~~~-----~~iiR---~i~k~EI~~y~~ 152 (333)
. +|+..|.++|.+ +|+++|+||||++|+++|.++++++|... + |.++ ..+++ .++|+||.+||+
T Consensus 116 r~ik~~~l~~~A~~~~Gad~IatGH~a~d~~~~~~~~l~rg~~~~kdqsy~L~~l~~~~l~~~i~PL~~~~K~eVr~~A~ 195 (380)
T 2der_A 116 KEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAE 195 (380)
T ss_dssp HHTTTTHHHHHHHHTTCCSEEECCCSCEEEEETTEEEEECCSSTTTCCGGGGSSCCHHHHHHEECCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEccccccccccchHHHhcccccccccceeecCCChhhcceeEccCCCCCHHHHHHHHH
Confidence 6 589999999998 99999999999999999999999998752 1 3332 12444 899999999999
Q ss_pred HcCCCceecCCCCCCchh-HHHHHHHHHHHHHHCCC
Q psy16535 153 YKKLVYFSTECIFAPNAY-RGHARTFLKHLEKIRPA 187 (333)
Q Consensus 153 ~~~l~~~~D~~n~~~~~~-Rn~iR~~lp~l~~~~p~ 187 (333)
++|+++.+++++.+.-+. +..++.+|..+...+|+
T Consensus 196 ~~Gl~~~~kp~s~~~cf~~~~~~~~fL~~~~~~~pG 231 (380)
T 2der_A 196 DLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPG 231 (380)
T ss_dssp HTTCC----------------CHHHHHHTTSCCCCC
T ss_pred HcCCCCccCCCCCCccccCchHHHHHHHHhhhhCCC
Confidence 999999988877665442 23455555544334566
No 6
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=99.04 E-value=1.3e-10 Score=116.15 Aligned_cols=110 Identities=19% Similarity=0.185 Sum_probs=90.6
Q ss_pred CchHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhc-hhcccccchhhhcC----CCccchhhh
Q psy16535 14 RKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGD-IARLQRCTDIITIG----RKNNCTFCG 88 (333)
Q Consensus 14 ~~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~-i~~l~~~~~v~~~~----~~~~~~~cr 88 (333)
+.++|.+||.+||.+|.+++++.|+++|++|||+| |++|||+|++++|+ +.++.++.+..... .+|..
T Consensus 96 ~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~d---D~aEt~L~~l~rG~g~~gL~gm~~~~~~~~~~iiRPLl---- 168 (464)
T 3a2k_A 96 GLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGD---DQVETILMRLVRGSTSKGYAGIPVKRPFHGGYLIRPFL---- 168 (464)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHH---HHHHHHHHHHHHCCCSSSTTCSCSEEECSSSEEECGGG----
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChH---HHHHHHHHHHHcCCCcccccCCCccccCCCCEEECCCc----
Confidence 46789999999999999999999999999999999 99999999999954 56666665544221 13332
Q ss_pred hHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcc-ccc
Q psy16535 89 VFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIA-RLQ 133 (333)
Q Consensus 89 ~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~-~L~ 133 (333)
.+.+..+.++|+++|+.++.+.+|.|+ .+.+|.+|.... .|.
T Consensus 169 ~~~k~eI~~ya~~~gl~~~~d~sn~~~---~~~Rn~iR~~~lp~L~ 211 (464)
T 3a2k_A 169 AVSRAEIEAYCRQMGLSPRCDPSNEKD---DYTRNRFRHHIVPLLR 211 (464)
T ss_dssp GSCHHHHHHHHHHTCCSSCSCTTCCCT---TSHHHHHHHTHHHHHH
T ss_pred cCcHHHHHHHHHHcCCCeEECCCCCCc---cchHHHHHHHHHHHHH
Confidence 367899999999999999999999998 488999998654 354
No 7
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=98.98 E-value=5.5e-11 Score=115.89 Aligned_cols=156 Identities=19% Similarity=0.114 Sum_probs=104.3
Q ss_pred HHHhcCCCEEEe--ccCCCC------CCcHHHHHHHHHHh-hchhcccccchh-----------hhc---CCCccchhhh
Q psy16535 32 GAAMLGVDCVAT--GHNADD------TDDIAETVLMNVLR-GDIARLQRCTDI-----------ITI---GRKNNCTFCG 88 (333)
Q Consensus 32 ~~~~~g~~~Ia~--~H~ld~------~~D~~Etfv~nl~r-g~i~~l~~~~~v-----------~~~---~~~~~~~~cr 88 (333)
++.+.|++++++ .|+.++ .++.+...+..+|. -++|........ .++ ...+||..|.
T Consensus 28 lL~~~G~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~~~~~~~~v~~~~l~~y~~G~tpnpc~~C~ 107 (376)
T 2hma_A 28 LLKEQGYDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCN 107 (376)
T ss_dssp HHHHTTCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHcCCcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcEEEEeChHHHHHHHHHHHHHHHhcCCCCChHHHHH
Confidence 444568877665 454432 13467888999999 778865433211 111 1246999996
Q ss_pred -hHHHHHHHHHhHhccccEEEcccCCcchH-HHHHHHHHhcCcc-c-----cccC-----Ccccc---ccCHHHHHHHHH
Q psy16535 89 -VFRRQALDRGAAMLGVDCVATGHNADDIA-ETVLMNVLRGDIA-R-----LQRC-----TDIIT---YAYEKEIVMYAY 152 (333)
Q Consensus 89 -~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~-ET~l~nl~rg~~~-~-----L~~~-----~~iiR---~i~k~EI~~y~~ 152 (333)
.+|+..|.++|+++|+++|+||||++|++ +|.+++++||.+. + |.++ ..+++ .++|+||.+||+
T Consensus 108 r~ik~~~l~~~A~~~G~d~IatGH~a~d~~~~~~~~~l~rg~d~~kdqsyfL~~l~~~~l~~~i~PL~~~~K~eVr~~A~ 187 (376)
T 2hma_A 108 KEIKFKAFLDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVRRLAE 187 (376)
T ss_dssp HHTTTTHHHHHHHTTTCSEEECCCSEEEEECSSSCEEEEECSSTTTCCGGGGTTCCHHHHTTEECTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcchhhhhCCCchhhhhhccccccccchhccCCChhhcCcEEecCcCCCHHHHHHHHH
Confidence 46789999999999999999999999998 8888888888652 1 3332 23444 899999999999
Q ss_pred HcCCCceecCCCCCCchh-HHHHHHHHHHHHHHCCC
Q psy16535 153 YKKLVYFSTECIFAPNAY-RGHARTFLKHLEKIRPA 187 (333)
Q Consensus 153 ~~~l~~~~D~~n~~~~~~-Rn~iR~~lp~l~~~~p~ 187 (333)
++|+++.+++.+.+.-+. +..++.+|..+...+|+
T Consensus 188 ~~gl~~~~k~~s~~~cf~~~~~~~~fL~~~~~~~pG 223 (376)
T 2hma_A 188 EAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPG 223 (376)
T ss_dssp HTTCTTTTCCCCCSCTTTTTSCHHHHHHTTSCCCCE
T ss_pred HcCCCcccCCCCCCccccCchhHHHHHHHHhhcCCC
Confidence 999999876544332222 22234444433233565
No 8
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=98.97 E-value=3.6e-10 Score=107.40 Aligned_cols=107 Identities=22% Similarity=0.265 Sum_probs=87.7
Q ss_pred CchHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhc-hhcccccchhhhcCCCccchhhhhHHH
Q psy16535 14 RKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGD-IARLQRCTDIITIGRKNNCTFCGVFRR 92 (333)
Q Consensus 14 ~~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~-i~~l~~~~~v~~~~~~~~~~~cr~~Rr 92 (333)
+.++|..||.+||.+|.+++++.|+++|++|||.| |++||+++++++|+ ++++.++.+......+|.. .+.+
T Consensus 102 ~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~d---D~~Et~l~~l~rg~g~~gl~~~~~~~~~iirPLl----~~~k 174 (317)
T 1wy5_A 102 RMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLN---DLLETSLLFFTRGTGLDGLIGFLPKEEVIRRPLY----YVKR 174 (317)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHH---HHHHHHHHHHHHCCCHHHHHCSCSEETTEECTTT----TCCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchh---HHHHHHHHHHHhCCCcccccCCCCCCCeEECCCc----cCCH
Confidence 46789999999999999999999999999999999 99999999999954 5666665443211223333 2578
Q ss_pred HHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcc
Q psy16535 93 QALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIA 130 (333)
Q Consensus 93 ~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~ 130 (333)
..+.++++++|+.++.+..|.|+ .+.+|.+|....
T Consensus 175 ~eI~~~~~~~gl~~~~d~sn~~~---~~~Rn~iR~~~l 209 (317)
T 1wy5_A 175 SEIEEYAKFKGLRWVEDETNYEV---SIPRNRIRHRVI 209 (317)
T ss_dssp HHHHHHHHHTTCCCCCCGGGGTC---CHHHHHHHHTHH
T ss_pred HHHHHHHHHcCCCeeECCCCCCC---ccHHHHHHHHHH
Confidence 99999999999999999999998 478999998643
No 9
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=98.94 E-value=1.9e-09 Score=106.14 Aligned_cols=162 Identities=12% Similarity=-0.017 Sum_probs=95.0
Q ss_pred HHHhcCCCEEEeccCCCC-CCcHHHHHHHHHHh-h-----chhcccccchh-h----hcC-CCccchhhhhHHHHHHHHH
Q psy16535 32 GAAMLGVDCVATGHNADD-TDDIAETVLMNVLR-G-----DIARLQRCTDI-I----TIG-RKNNCTFCGVFRRQALDRG 98 (333)
Q Consensus 32 ~~~~~g~~~Ia~~H~ld~-~~D~~Etfv~nl~r-g-----~i~~l~~~~~v-~----~~~-~~~~~~~cr~~Rr~~l~~~ 98 (333)
++.+.|++++++.-+..+ .++.++..+..+|+ - ++|......+. . ... ...+|..||..++..+.++
T Consensus 206 ll~~~G~~v~av~v~~~~~~~~~~~~~v~~~a~~l~~~~ggi~~~vv~~~~~~~~i~~~~~~~~~c~~~Rr~~~~~~~~~ 285 (413)
T 2c5s_A 206 LTMKRGVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQKTINKEIPSSYSMTVMRRMMMRITERI 285 (413)
T ss_dssp HHHHBTEEEEEEEEECTTTSCHHHHHHHHHHHHHHGGGSSCEEEEEEECHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence 344568887775322211 23455566666666 3 56654432211 1 111 1237788999999999999
Q ss_pred hHhccccEEEcccCCcchHHHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcCC-----CceecCCCCC---C
Q psy16535 99 AAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKKL-----VYFSTECIFA---P 167 (333)
Q Consensus 99 a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~l-----~~~~D~~n~~---~ 167 (333)
|++.|+++|++|||+||++||+++|+...... ...+++| .++|+||.+||+..|+ ++..|.|+.- .
T Consensus 286 A~~~g~~~I~tG~~~dD~ae~~l~~l~~~~~~---~~~~virPL~~l~K~eI~~~a~~~Gl~~~~~~p~~~~c~~~~~~~ 362 (413)
T 2c5s_A 286 AEERNALAITTGESLGQVASQTLDSMHTINEV---TNYPVIRPLITMDKLEIIKIAEEIGTYDISIRPYEDCCTVFTPAS 362 (413)
T ss_dssp HHHTTCCEEECCCCSSSTTSCCHHHHHHHGGG---CCSCEECTTTTCCHHHHHHHHHHTTCHHHHTSCC-----------
T ss_pred HHHcCCCEEEEcccchhhHHHHHHHHhccccc---CCCEEEeccCCCCHHHHHHHHHHcCCCccccCCCCCCCeeeCCCC
Confidence 99999999999999999999999998742111 1124555 8999999999999996 4455667521 1
Q ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy16535 168 NAYRGHARTFLKHLEKIRPASIMDIIHSGEQ 198 (333)
Q Consensus 168 ~~~Rn~iR~~lp~l~~~~p~~~~~l~~~~~~ 198 (333)
..+|.++ ..+..+++.. ++...+.++.+.
T Consensus 363 ~~t~~~l-~~l~~~E~~l-~~~~~~~~a~~~ 391 (413)
T 2c5s_A 363 PATKPKR-EKANRFEAKY-DFTPLIDEAVAN 391 (413)
T ss_dssp ---CCCH-HHHHHHHTTS-CCHHHHHHHHHH
T ss_pred CchHHHH-HHHHHHHHhc-CHHHHHHHHHhc
Confidence 2222222 2444455433 444444444433
No 10
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=98.83 E-value=8.9e-10 Score=109.17 Aligned_cols=106 Identities=22% Similarity=0.173 Sum_probs=86.4
Q ss_pred CCchHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhc-hhcccccchhhhcC----CCccchhh
Q psy16535 13 GRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGD-IARLQRCTDIITIG----RKNNCTFC 87 (333)
Q Consensus 13 ~~~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~-i~~l~~~~~v~~~~----~~~~~~~c 87 (333)
.+.++|..||.+||.+|.+++++ +++|++|||+| |++|||+|+++||+ +.++.++.+..... .+|..
T Consensus 86 ~~~~~e~~aR~~Ry~~l~~~a~~--~~~i~tgH~~d---D~aEt~L~~l~RG~g~~gL~gm~~~~~~~~~~iiRPLl--- 157 (433)
T 1ni5_A 86 EGLGIEAQARQARYQAFARTLLP--GEVLVTAQHLD---DQCETFLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLL--- 157 (433)
T ss_dssp SSSTTTTHHHHHHHHHHHHTCCT--TEEEECCCCHH---HHHHHHHHHHTTTCCTTGGGCCCSEEEETTEEEECGGG---
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh--CCeEEeeccch---HHHHHHHHHHHcCCCcccccCCCCccccCCceEEccCc---
Confidence 35689999999999999999974 89999999999 99999999999954 56666665543221 23332
Q ss_pred hhHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcc
Q psy16535 88 GVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIA 130 (333)
Q Consensus 88 r~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~ 130 (333)
.+.+..+.+||+++|+.++.+.+|.|+ .|.+|.+|....
T Consensus 158 -~~~k~eI~~y~~~~gl~~~~D~sn~~~---~~~Rn~iR~~~l 196 (433)
T 1ni5_A 158 -ARTRGELVQWARQYDLRWIEDESNQDD---SYDRNFLRLRVV 196 (433)
T ss_dssp -SCCHHHHHHHHHHTTCCCBCCCCGGGT---TSHHHHHHHTHH
T ss_pred -cCCHHHHHHHHHHcCCCeEECCCCCCc---ccchHHHHHHHH
Confidence 267899999999999999999999998 488999997654
No 11
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=98.81 E-value=2.8e-09 Score=108.11 Aligned_cols=129 Identities=12% Similarity=0.067 Sum_probs=83.7
Q ss_pred CCC--EEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhhh---cCC-Cc---cchhhhhHHHHHHHHHhHhccccE
Q psy16535 37 GVD--CVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIIT---IGR-KN---NCTFCGVFRRQALDRGAAMLGVDC 106 (333)
Q Consensus 37 g~~--~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~---~~~-~~---~~~~cr~~Rr~~l~~~a~~~g~~~ 106 (333)
|.+ .++++|++.. ++..+.++..+|+ .+++......+... ..+ .+ .|.+|+..+++.|.++|++.|+++
T Consensus 255 G~~v~av~vd~g~~~-~~e~~~~~~~~a~~lgi~~~vv~~~~~~~~~l~g~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~ 333 (527)
T 3tqi_A 255 GDQLVCVLVDTGLLR-LNEVDEVLNVFQKHLGAKVICVDAKDRFMKALKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKW 333 (527)
T ss_dssp GGGEEEEEECCSCSC-TTHHHHHHHHHTTSSCCEEEEECCHHHHHSSSSSCCCHHHHHHHHHHHHHHHHHHTTTTTTCCE
T ss_pred CCeEEEEEeccCCCC-hhHHHHHHHHHHHHcCCcEEEEeChHHHHHhhcCCCChhhhhhhhHHHHHHHHHHHHHHcCCCE
Confidence 554 4556777753 3566777777998 77886544332211 111 12 355677789999999999999999
Q ss_pred EEcccCCcchHHHHHHHH-----HhcCc-c-cccc--CCcccc---ccCHHHHHHHHHHcCCCc---eecCCCCC
Q psy16535 107 VATGHNADDIAETVLMNV-----LRGDI-A-RLQR--CTDIIT---YAYEKEIVMYAYYKKLVY---FSTECIFA 166 (333)
Q Consensus 107 ia~aH~~dD~~ET~l~nl-----~rg~~-~-~L~~--~~~iiR---~i~k~EI~~y~~~~~l~~---~~D~~n~~ 166 (333)
|++|||+||++||+++|. +++.. . ++.. ...++| .++|+||++|++++|+|+ +.++||..
T Consensus 334 la~Gh~~dD~~Et~~~~~g~~~~ik~~~~l~gl~~~~~~~iirPL~~l~K~EIr~~a~~lGlp~~~v~~~P~p~~ 408 (527)
T 3tqi_A 334 LGQGTIYPDVIESAKTKTGKGHIIKTHHNVGGLPLNMELKLIEPLRELFKDEVRKLGLELGLPADLIYRHPFPGP 408 (527)
T ss_dssp EECCCCHHHHHCC--------------------------CEECTTTTCCHHHHHHHHHHHTCCHHHHTCCCCCTT
T ss_pred EEccccCCccccccccCCChhheeeeecccccCcccccCccccchhcCCHHHHHHHHHHcCCChhhhccCCCCCC
Confidence 999999999999999884 22211 0 1221 123555 899999999999999999 67887754
No 12
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=98.81 E-value=1.7e-08 Score=89.69 Aligned_cols=122 Identities=11% Similarity=-0.087 Sum_probs=74.8
Q ss_pred HhcCCCE--EEeccCCCCCCcHHHHHHHHHHh-hchhcccccchh-hh----------c-------CCCccchhhhhHHH
Q psy16535 34 AMLGVDC--VATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDI-IT----------I-------GRKNNCTFCGVFRR 92 (333)
Q Consensus 34 ~~~g~~~--Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v-~~----------~-------~~~~~~~~cr~~Rr 92 (333)
.+.|.++ ++++|+... +.+..++..++. .+++......+. .. . ...++|..||.++|
T Consensus 24 ~~~~~~v~~~~~~~~~~~--~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~ 101 (219)
T 3bl5_A 24 LKEFEEVETVTFHYNQRH--SQEVEVAKSIAEKLGVKNHLLDMSLLNQLAPNALTRNDIEIEVKDGELPSTFVPGRNLVF 101 (219)
T ss_dssp HHHCSEEEEEEEESSCTT--CHHHHHHHHHHHTTCCCEEEEECGGGGGGSTGGGC--------------CCCCTTHHHHH
T ss_pred HHcCCceEEEEEeCCCCC--HHHHHHHHHHHHHhCCCeEEEeChHHhhhcccccccccccccccccCCCCceeechHHHH
Confidence 3335544 445676653 466789999998 667653322211 10 1 12347888999999
Q ss_pred -HHHHHHhHhccccEEEcccCCcchHHH------HHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcCCC
Q psy16535 93 -QALDRGAAMLGVDCVATGHNADDIAET------VLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKKLV 157 (333)
Q Consensus 93 -~~l~~~a~~~g~~~ia~aH~~dD~~ET------~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~l~ 157 (333)
.++.++|+++|+++|++|||+||+++. ++..+-+....+......++| .++|+||.+|++++|+|
T Consensus 102 ~~~~~~~a~~~g~~~i~tG~~~dd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ii~PL~~~~K~ei~~~a~~~glp 176 (219)
T 3bl5_A 102 LSFASILAYQIGARHIITGVCETDFSGYPDCRDEFVKSCNVTVNLAMEKPFVIHTPLMWLNKAETWKLADELGAL 176 (219)
T ss_dssp HHHHHHHHHHHTCSEEECCCCC----CCGGGSHHHHHHHHHHHHHHHTSCCEEECTTTTCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCCEEEEeccccccCCCCCCCHHHHHHHHHHHHhccCCCeEEEeccccCCHHHHHHHHHHcCCC
Confidence 788999999999999999999998862 222222111001111224555 89999999999999994
No 13
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=98.77 E-value=5.6e-08 Score=92.10 Aligned_cols=120 Identities=14% Similarity=0.054 Sum_probs=69.0
Q ss_pred CCCE--EEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhh---hcCC-Ccc---chhhhhHHHHHHHHHhHhccccE
Q psy16535 37 GVDC--VATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDII---TIGR-KNN---CTFCGVFRRQALDRGAAMLGVDC 106 (333)
Q Consensus 37 g~~~--Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~---~~~~-~~~---~~~cr~~Rr~~l~~~a~~~g~~~ 106 (333)
|.++ +.++|+... .+..+.+...+++ .+++......+.. ...+ .+| |.+|+..|+..|.++|+++|+++
T Consensus 45 g~~v~av~vd~g~~~-~~e~~~~~~~~a~~lgi~~~vv~~~~~f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~ 123 (308)
T 2dpl_A 45 GDRLHAVFVNTGFLR-KGEPEFVVKTFRDEFGMNLHYVDAQDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVAKKIGAEY 123 (308)
T ss_dssp GGGEEEEEEECSCCC-TTHHHHHHHHHTTTTCCEEEEEECHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred CCCEEEEEEcCCCCC-hHHHHHHHHHHHHHcCCcEEEEECCHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHcCcCE
Confidence 5554 445677643 1344444444665 6677544332211 1111 123 45677889999999999999999
Q ss_pred EEcccCCcchHHHHHHHHHhcC-cc-cccc--CCcccc---ccCHHHHHHHHHHcCCCce
Q psy16535 107 VATGHNADDIAETVLMNVLRGD-IA-RLQR--CTDIIT---YAYEKEIVMYAYYKKLVYF 159 (333)
Q Consensus 107 ia~aH~~dD~~ET~l~nl~rg~-~~-~L~~--~~~iiR---~i~k~EI~~y~~~~~l~~~ 159 (333)
|++|||.||++||.. -+++. .. ++.. ...++| .++|+||.+|++.+|+|+.
T Consensus 124 la~Gh~~dD~~Et~~--~iks~~~~~~l~~~~~~~virPL~~l~K~EI~~~a~~~glp~~ 181 (308)
T 2dpl_A 124 LIQGTIAPDWIESQG--KIKSHHNVGGLPEKLNLKLIEPLRDLYKDEVRELAKFLGLPEK 181 (308)
T ss_dssp EECCCCCC-----------------------CCCEEECTTTTCCHHHHHHHHHHTTCCHH
T ss_pred EEECCCCccchhhcc--chhhhhccccCCccCCCeEEEEcccCCHHHHHHHHHHhCCCce
Confidence 999999999999953 11110 01 1211 123555 8999999999999999973
No 14
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=98.40 E-value=6.1e-07 Score=80.86 Aligned_cols=123 Identities=14% Similarity=-0.023 Sum_probs=76.5
Q ss_pred HhcCCCEEE--eccCCCCCCcHHHHHHHHHHh-hchh-cccccch-hh--------h------------cCCCccchhhh
Q psy16535 34 AMLGVDCVA--TGHNADDTDDIAETVLMNVLR-GDIA-RLQRCTD-II--------T------------IGRKNNCTFCG 88 (333)
Q Consensus 34 ~~~g~~~Ia--~~H~ld~~~D~~Etfv~nl~r-g~i~-~l~~~~~-v~--------~------------~~~~~~~~~cr 88 (333)
.+.+.++++ ++|+.++ ..+..++..+|+ .+++ ......+ +. . ....++|..||
T Consensus 23 ~~~~~~v~av~~~~g~~~--~~e~~~a~~~a~~lgi~~~~vi~~~~l~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~R 100 (232)
T 2pg3_A 23 LQDYDDVHCITFDYGQRH--RAEIEVAQELSQKLGAAAHKVLDVGLLNELATSSLTRDSIPVPDYDANAQGIPNTFVPGR 100 (232)
T ss_dssp HHHCSEEEEEEEESSSSC--HHHHHHHHHHHHHHTCSEEEEEECTHHHHTSHHHHHHTTCCCCC---------CCCCTTH
T ss_pred HHcCCCEEEEEEECCCCC--HHHHHHHHHHHHHhCCCceEEEeChhHHHHhhhhcccccccccccccccCCCCCCeEech
Confidence 333455444 4566553 466788999998 7777 5432222 11 0 01134788899
Q ss_pred hHHHHHH-HHHhHhccccEEEcccCCcchHHH------HHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcCC-C
Q psy16535 89 VFRRQAL-DRGAAMLGVDCVATGHNADDIAET------VLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKKL-V 157 (333)
Q Consensus 89 ~~Rr~~l-~~~a~~~g~~~ia~aH~~dD~~ET------~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~l-~ 157 (333)
..++..+ .++|++.|+++|++|||+||+++. ++..+-.-...+......+++ .++|.||.+|+.++|+ |
T Consensus 101 ~~~~~~la~~~A~~~g~~~I~~G~~~~D~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~PL~~~~K~ei~~~a~~~gl~~ 180 (232)
T 2pg3_A 101 NILFLTLASIYAYQVGAEAVITGVCETDFSGYPDCRDEFVKALNQAIVLGIARDIRFETPLMWLNKAETWALADYYQQLD 180 (232)
T ss_dssp HHHHHHHHHHHHHHHTCSEEECCCCSCSSSCCGGGSHHHHHHHHHHHHHHHTSCCEEECTTTTCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCcCEEEEccCccccCCCCCCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHHHcCCCc
Confidence 9988777 899999999999999999998641 111110000000001123455 8999999999999999 7
Q ss_pred c
Q psy16535 158 Y 158 (333)
Q Consensus 158 ~ 158 (333)
+
T Consensus 181 ~ 181 (232)
T 2pg3_A 181 T 181 (232)
T ss_dssp H
T ss_pred c
Confidence 4
No 15
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=98.34 E-value=1.4e-06 Score=87.85 Aligned_cols=126 Identities=15% Similarity=0.049 Sum_probs=77.5
Q ss_pred HHHhcCCCEE--EeccCCCCCCcHHHHHHHHHHh-hchhcccccchhh---hcCC-Cc---cchhhhhHHHHHHHHHhHh
Q psy16535 32 GAAMLGVDCV--ATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDII---TIGR-KN---NCTFCGVFRRQALDRGAAM 101 (333)
Q Consensus 32 ~~~~~g~~~I--a~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~---~~~~-~~---~~~~cr~~Rr~~l~~~a~~ 101 (333)
++.+.|.+++ .++|++.. +.+...+..+|+ .+++......+.. ...+ .. .|.+|+..|++.|.++|++
T Consensus 228 ll~~~g~~v~av~vd~g~~~--~~e~~~v~~~~~~lgi~~~vv~~~~~f~~~l~g~~~pe~~r~~~~~~~~~~l~~~A~~ 305 (503)
T 2ywb_A 228 LLAKAGVDHLAVFVDHGLLR--LGEREEVEGALRALGVNLLVVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARE 305 (503)
T ss_dssp HHHHHTCEEEEEEEECSCSC--TTHHHHHHHHHHHTTCCEEEEECHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEEEEeCCCCC--hHHHHHHHHHHHHhCCCEEEEECcHHHHHhhcCCCChHHHhhhhhHHHHHHHHHHHHh
Confidence 3333365544 45677642 345667888888 6677644332211 1111 12 3456677899999999999
Q ss_pred c-cccEEEcccCCcchHHHHHHH---HHhc-Ccc-cccc-C-Ccccc---ccCHHHHHHHHHHcCCCce
Q psy16535 102 L-GVDCVATGHNADDIAETVLMN---VLRG-DIA-RLQR-C-TDIIT---YAYEKEIVMYAYYKKLVYF 159 (333)
Q Consensus 102 ~-g~~~ia~aH~~dD~~ET~l~n---l~rg-~~~-~L~~-~-~~iiR---~i~k~EI~~y~~~~~l~~~ 159 (333)
+ |+++|++|||.||++||.++. .++. .+. ++.. . ..+++ .++|+||.+|++++|+|+.
T Consensus 306 ~~g~~~la~G~~~~D~~Et~~~g~~~~iks~~~l~~l~~~~~~~ii~PL~~l~K~EVr~~a~~~glp~~ 374 (503)
T 2ywb_A 306 RGPFRFLAQGTLYPDVIESAGGHGAAKIKSHHNVGGLPEDLEFELLEPFRLLFKDEVRELALLLGLPDT 374 (503)
T ss_dssp HCCCSEEECCCCHHHHHC-----------------CCCSSCCCEEECTTTTCCHHHHHHHHHHTTCCHH
T ss_pred cCCCCEEEECCcCccchhhccCCcccccccccccccccccccCceEehhhcCCHHHHHHHHHHcCCChh
Confidence 9 999999999999999996541 0000 011 1221 1 23455 8999999999999999974
No 16
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=98.31 E-value=3.4e-07 Score=81.71 Aligned_cols=117 Identities=11% Similarity=0.038 Sum_probs=79.4
Q ss_pred CCCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhhh------cCC------CccchhhhhHHHHHHHHHhHhcc
Q psy16535 37 GVDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIIT------IGR------KNNCTFCGVFRRQALDRGAAMLG 103 (333)
Q Consensus 37 g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~------~~~------~~~~~~cr~~Rr~~l~~~a~~~g 103 (333)
.+.+++++|+.+. ++...|+..+|+ .+++......++.. .+. .+.+..|...+...|.++++++|
T Consensus 70 ~v~~v~vd~g~~~--~e~~~~v~~~~~~~gi~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~ 147 (215)
T 1sur_A 70 DIPVILTDTGYLF--PETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELN 147 (215)
T ss_dssp TCEEEEEECSCBC--HHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred CCeEEEeeCCCCC--HHHHHHHHHHHHHhCCcEEEEeCCCCHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHhcC
Confidence 4557777888764 678899999999 88886554333210 110 01233456677788999999999
Q ss_pred ccEEEcccCCcchHHHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcCCCcee
Q psy16535 104 VDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKKLVYFS 160 (333)
Q Consensus 104 ~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~l~~~~ 160 (333)
+++|++|||.||..++..++.++. .+...++| .++++||..|++.+||||..
T Consensus 148 ~~~i~~G~r~dd~~~r~~~~~~~~-----~~~~~~i~PLl~~t~~dI~~y~~~~~lp~~~ 202 (215)
T 1sur_A 148 AQTWFAGLRREQSGSRANLPVLAI-----QRGVFKVLPIIDWDNRTIYQYLQKHGLKYHP 202 (215)
T ss_dssp EEEEECCCCTTSSSTTTTCCSEEE-----ETTEEEECTTTTCCHHHHHHHHHHHTCCCCG
T ss_pred CceEEEEeehhhhhhhcCCCcccc-----CCCEEEEechHhCCHHHHHHHHHHhCCCCCh
Confidence 999999999999654333222211 01112444 89999999999999999853
No 17
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=98.24 E-value=2.9e-06 Score=83.21 Aligned_cols=122 Identities=13% Similarity=0.029 Sum_probs=76.2
Q ss_pred hcCCCEEEe--ccCCCCCCcHHHHHHHHHHh-hch-hcccccch-----------hhhcCCC-----ccchhhhhHHHHH
Q psy16535 35 MLGVDCVAT--GHNADDTDDIAETVLMNVLR-GDI-ARLQRCTD-----------IITIGRK-----NNCTFCGVFRRQA 94 (333)
Q Consensus 35 ~~g~~~Ia~--~H~ld~~~D~~Etfv~nl~r-g~i-~~l~~~~~-----------v~~~~~~-----~~~~~cr~~Rr~~ 94 (333)
.+|++++++ +|+.+ .+..++..+|. -++ +....... +...... .-.+.||..++..
T Consensus 23 ~~g~~V~av~vd~g~~----~e~e~a~~~A~~lGi~~~~vvd~~~ef~~~~~~~~i~~~~~~e~~y~~g~~~~R~~~~~~ 98 (400)
T 1kor_A 23 TYRAEVIAFTADIGQG----EEVEEAREKALRTGASKAIALDLKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKH 98 (400)
T ss_dssp HHTCEEEEEEEESSCS----SCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHHTTCCBTTTBCCTTTTHHHHHHHH
T ss_pred hhCCcEEEEEEeCCCH----HHHHHHHHHHHHhCCCeEEEEeCcHHHHHHhhHHHHHcCCccccccccCCccchHHHHHH
Confidence 347776654 45542 34677888888 666 55432211 1110000 0123488899999
Q ss_pred HHHHhHhccccEEEcccCCc--chHHHHHHHHHhcCccccccCCcccc---cc---CHHHHHHHHHHcCCCcee-cCCCC
Q psy16535 95 LDRGAAMLGVDCVATGHNAD--DIAETVLMNVLRGDIARLQRCTDIIT---YA---YEKEIVMYAYYKKLVYFS-TECIF 165 (333)
Q Consensus 95 l~~~a~~~g~~~ia~aH~~d--D~~ET~l~nl~rg~~~~L~~~~~iiR---~i---~k~EI~~y~~~~~l~~~~-D~~n~ 165 (333)
+.++|++.|+++|++|||.| ||+++-+ . +.+ +.....+++ .+ +|+||.+|++.+|||+.. .+||+
T Consensus 99 L~~~A~~~G~~~IatG~~~d~nDq~~f~~-g-~~~----l~p~l~ii~PL~~~~~~tK~eI~~ya~~~gip~~~~~~~py 172 (400)
T 1kor_A 99 LVRIAEEEGAEAIAHGATGKGNDQVRFEL-T-AYA----LKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKPY 172 (400)
T ss_dssp HHHHHHHHTCSEEECCCCTTSSHHHHHHH-H-HHH----HCTTCEEECGGGTCCCCSHHHHHHHHHHTTCCCC-----CC
T ss_pred HHHHHHHcCCCEEEECCCCCcccHHHHHH-H-HHh----cCCCCEEEEeecccccCCHHHHHHHHHHcCCCcccCCCCCC
Confidence 99999999999999999997 9988521 1 111 111112333 55 999999999999999985 55665
Q ss_pred C
Q psy16535 166 A 166 (333)
Q Consensus 166 ~ 166 (333)
+
T Consensus 173 s 173 (400)
T 1kor_A 173 S 173 (400)
T ss_dssp E
T ss_pred c
Confidence 4
No 18
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=98.17 E-value=2.1e-06 Score=81.99 Aligned_cols=122 Identities=11% Similarity=0.087 Sum_probs=82.7
Q ss_pred CCCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhhhc-C----CCccchhhhhHHHHHHHHHhHhccccEEEcc
Q psy16535 37 GVDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIITI-G----RKNNCTFCGVFRRQALDRGAAMLGVDCVATG 110 (333)
Q Consensus 37 g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~~-~----~~~~~~~cr~~Rr~~l~~~a~~~g~~~ia~a 110 (333)
.+.+++++|+... ++...|+..+|. .+++......+.... + ..+++..|...++..|.++++++|++++++|
T Consensus 76 ~i~vv~vDtg~~~--~et~~~v~~~~~~~gi~l~v~~~~~~~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG 153 (325)
T 1zun_A 76 PFPVMHVDTRWKF--QEMYRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGG 153 (325)
T ss_dssp SSCEEEECCSCCC--HHHHHHHHHHHHTTTCCEEEECC--------------CCHHHHHHTHHHHHHHHHHHTCSEEECC
T ss_pred CEEEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEeCchHHhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 5678888888874 678899999999 888876544332211 1 1124455666777899999999999999999
Q ss_pred cCCcchHHHHHHHHHh--cCccccc----c------------CCcc--cc---ccCHHHHHHHHHHcCCCcee
Q psy16535 111 HNADDIAETVLMNVLR--GDIARLQ----R------------CTDI--IT---YAYEKEIVMYAYYKKLVYFS 160 (333)
Q Consensus 111 H~~dD~~ET~l~nl~r--g~~~~L~----~------------~~~i--iR---~i~k~EI~~y~~~~~l~~~~ 160 (333)
|+.||......+++++ |+..+.. + .+.. ++ .++++||..|+..+||||..
T Consensus 154 ~R~Des~~Ra~~~~~~~r~~~~~~d~~~~rp~l~~~~n~~~~~g~~~~i~PLl~wt~~dIw~Yi~~~~lp~~~ 226 (325)
T 1zun_A 154 ARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVP 226 (325)
T ss_dssp CCTTSSGGGGGCCSEEEECTTCCBCGGGCCCCCSSCCCCCCCTTCEEEECTTTTCCHHHHHHHHHHHTCCCCS
T ss_pred cccchhhhhhcccceeccccccccCccccCcchhhhccccccCCCeEEEEchhhCCHHHHHHHHHHhCCCcch
Confidence 9999876544444443 3211110 0 0112 34 89999999999999999954
No 19
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=98.14 E-value=5.2e-06 Score=82.50 Aligned_cols=133 Identities=13% Similarity=-0.045 Sum_probs=82.7
Q ss_pred HHHHHHhcCCCEEEe--ccCCCCCCcHHHHHHHHHHh-hch-hcccccc----------hhhh---c--CCC----ccch
Q psy16535 29 LDRGAAMLGVDCVAT--GHNADDTDDIAETVLMNVLR-GDI-ARLQRCT----------DIIT---I--GRK----NNCT 85 (333)
Q Consensus 29 L~~~~~~~g~~~Ia~--~H~ld~~~D~~Etfv~nl~r-g~i-~~l~~~~----------~v~~---~--~~~----~~~~ 85 (333)
+..++++.|++++++ +|+... +.+..++..+|. -++ +..+... .+.. . .++ ...+
T Consensus 26 ll~~L~e~G~eViavtvd~Gq~~--~~ele~a~~~A~~lGi~~~~vvD~~eef~~~v~p~i~~na~y~~eg~rcY~l~t~ 103 (455)
T 1k92_A 26 ALLWMRQKGAVPYAYTANLGQPD--EEDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTP 103 (455)
T ss_dssp HHHHHHHTTCEEEEEEEECCCTT--CSCTTHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHTCCCCEETTEECCCHHH
T ss_pred HHHHHHHcCCEEEEEEEEcCCCC--HHHHHHHHHHHHHhCCCeEEEEeChHHHHHHhHHHHHcCCcccccCceecccCCc
Confidence 334445558887764 465432 345677888888 666 4332211 0111 0 111 1235
Q ss_pred hhhhHHHHHHHHHhHhccccEEEcccC--CcchHHHHHHHH-HhcCccccccCCcccc------ccCHHHHHHHHHHcCC
Q psy16535 86 FCGVFRRQALDRGAAMLGVDCVATGHN--ADDIAETVLMNV-LRGDIARLQRCTDIIT------YAYEKEIVMYAYYKKL 156 (333)
Q Consensus 86 ~cr~~Rr~~l~~~a~~~g~~~ia~aH~--~dD~~ET~l~nl-~rg~~~~L~~~~~iiR------~i~k~EI~~y~~~~~l 156 (333)
.||.+++..+.++|++.|+++|++||| .|||+. +++ +.+...++..+.|+.. .++|+||.+||+++||
T Consensus 104 ~aRp~i~~~l~e~A~e~Gad~IAtGht~kgnDq~r---f~~~~~al~p~l~viaPlr~~~ll~~~lsK~EI~~yA~~~GI 180 (455)
T 1k92_A 104 LGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIER---FYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGF 180 (455)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEECCCCTTSSHHHH---HHHHHHHHCTTCEEECGGGCHHHHHHSSSHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHH---HHHHHHhcCCCCEEECeeccccccccCCCHHHHHHHHHHcCC
Confidence 678889999999999999999999997 588863 222 2111112333333221 1899999999999999
Q ss_pred Ccee-cCCCCC
Q psy16535 157 VYFS-TECIFA 166 (333)
Q Consensus 157 ~~~~-D~~n~~ 166 (333)
|+.. ..|||+
T Consensus 181 p~~~t~~~pyS 191 (455)
T 1k92_A 181 DYKMSVEKAYS 191 (455)
T ss_dssp CCCCCCCCSSE
T ss_pred CcccCCCCCCc
Confidence 9975 456655
No 20
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=98.08 E-value=6e-06 Score=86.25 Aligned_cols=76 Identities=12% Similarity=0.039 Sum_probs=59.0
Q ss_pred HHHHHHHHhHhcccc----EEEcccCCcchHHHHHHHHHhcCcc--------cc----ccCCcccc---ccCHHHHHHHH
Q psy16535 91 RRQALDRGAAMLGVD----CVATGHNADDIAETVLMNVLRGDIA--------RL----QRCTDIIT---YAYEKEIVMYA 151 (333)
Q Consensus 91 Rr~~l~~~a~~~g~~----~ia~aH~~dD~~ET~l~nl~rg~~~--------~L----~~~~~iiR---~i~k~EI~~y~ 151 (333)
+++++.++|++.|++ ++++||+.+|++||+.+.+.+|++. ++ .....+++ .++|+||.+|+
T Consensus 348 ~~~v~~~~A~~~g~~~~~~~LatG~~~~D~iEs~~~~l~~g~~~iks~~nv~g~~~~~~~~~~~i~PL~~L~K~EVr~la 427 (697)
T 2vxo_A 348 FVKIANEVIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKDFHKDEVRILG 427 (697)
T ss_dssp HHHHHHHHHHHTCCCTTSEEEECCCSSCCSBCCHHHHHHSCCCGGGSCCSSCHHHHHHHHTTCEECGGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccEEEEEeccChhhhhhhhhhhhcCccccccccccchhhHHhccCCEEEEecccCCHHHHHHHH
Confidence 456667888999988 9999999999999999888887542 11 11234555 89999999999
Q ss_pred HHcCCCce-ecCCCCC
Q psy16535 152 YYKKLVYF-STECIFA 166 (333)
Q Consensus 152 ~~~~l~~~-~D~~n~~ 166 (333)
++.|+|+. .+.||+.
T Consensus 428 ~~lGlP~~i~~r~Ps~ 443 (697)
T 2vxo_A 428 RELGLPEELVSRHPFP 443 (697)
T ss_dssp HHTTCCHHHHTCCCCC
T ss_pred HHcCCCcceeeCCCCC
Confidence 99999985 4666654
No 21
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=98.06 E-value=9.8e-06 Score=79.74 Aligned_cols=129 Identities=10% Similarity=-0.035 Sum_probs=77.7
Q ss_pred HHHhcCCCEEE--eccCCCCCCcHHHHHHHHHHh-hchh-cccccc------hhh-----hcCC---Cccc--hhhhhHH
Q psy16535 32 GAAMLGVDCVA--TGHNADDTDDIAETVLMNVLR-GDIA-RLQRCT------DII-----TIGR---KNNC--TFCGVFR 91 (333)
Q Consensus 32 ~~~~~g~~~Ia--~~H~ld~~~D~~Etfv~nl~r-g~i~-~l~~~~------~v~-----~~~~---~~~~--~~cr~~R 91 (333)
++.+.|+++++ ++|+.. .+..++..+|. -+++ ...... ++. .... .-+| ..+|.++
T Consensus 24 lL~e~G~eV~av~vd~g~~----~e~e~a~~~A~~lGi~~~~vvd~~~ef~~~~~~~~i~~~a~~e~~y~~g~~~aRp~i 99 (413)
T 2nz2_A 24 WLKEQGYDVIAYLANIGQK----EDFEEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCI 99 (413)
T ss_dssp HHHHTTEEEEEEEEESSCC----CCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHHTTCCBTTTBCCTTTTHHHHH
T ss_pred HHHHcCCEEEEEEEECCcH----HHHHHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHHhCcccccccccccccchHHH
Confidence 33444777655 456654 23567888888 6666 433211 111 0010 0122 2366778
Q ss_pred HHHHHHHhHhccccEEEcccCC--cchHHHHHHHHHhcCccccccCCcccc-----cc-CHHHHHHHHHHcCCCceec-C
Q psy16535 92 RQALDRGAAMLGVDCVATGHNA--DDIAETVLMNVLRGDIARLQRCTDIIT-----YA-YEKEIVMYAYYKKLVYFST-E 162 (333)
Q Consensus 92 r~~l~~~a~~~g~~~ia~aH~~--dD~~ET~l~nl~rg~~~~L~~~~~iiR-----~i-~k~EI~~y~~~~~l~~~~D-~ 162 (333)
+..+.++|++.|+++|++|||. |||++..+. +.+...++..+.|+.. .+ +|+||.+||+++|||+..+ .
T Consensus 100 ~~~l~~~A~~~Ga~~IatGh~~~~nDq~rf~lg--~~~l~p~l~ii~Pl~d~~~ll~~~sK~EI~~yA~~~Gip~~~~~~ 177 (413)
T 2nz2_A 100 ARKQVEIAQREGAKYVSHGATGKGNDQVRFELS--CYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPK 177 (413)
T ss_dssp HHHHHHHHHHHTCSEEECCCCTTSSHHHHHHHH--HHHHCTTCEEECGGGCHHHHTTCC-CHHHHHHHHHTTCCCCSSCC
T ss_pred HHHHHHHHHHcCCCEEEECCcCcccchHHHHHH--HHhcCCCCceeccccchhhhccCCCHHHHHHHHHHcCCCeecCCC
Confidence 9999999999999999999999 899873221 1111112322233331 46 9999999999999999864 4
Q ss_pred CCCC
Q psy16535 163 CIFA 166 (333)
Q Consensus 163 ~n~~ 166 (333)
||++
T Consensus 178 ~~~S 181 (413)
T 2nz2_A 178 NPWS 181 (413)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 4443
No 22
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=98.05 E-value=6.5e-06 Score=83.33 Aligned_cols=120 Identities=16% Similarity=0.144 Sum_probs=74.2
Q ss_pred CCC--EEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchh---hhcCC-Ccc---chhhhhHHHHHHHHHhHhc-ccc
Q psy16535 37 GVD--CVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDI---ITIGR-KNN---CTFCGVFRRQALDRGAAML-GVD 105 (333)
Q Consensus 37 g~~--~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v---~~~~~-~~~---~~~cr~~Rr~~l~~~a~~~-g~~ 105 (333)
|.+ .+.++|++... +..+.....+|+ .+++......+. ....+ .+| |.+|+..+++.|.++|+++ |++
T Consensus 252 G~~v~av~v~~g~~~~-~e~~~~~~~la~~lgi~~~~v~~~~~f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~~g~~ 330 (525)
T 1gpm_A 252 GKNLTCVFVDNGLLRL-NEAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVK 330 (525)
T ss_dssp GGGEEEEEEECSCSCT-THHHHHHHHHTTTTCCCEEEEECHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHSSSEE
T ss_pred CCCEEEEEEeCCCCCc-hHHHHHHHHHHHHhCCcEEEEeccHHHHHhhcCCCChHHhhhhhhHHHHHHHHHHHHhcCCCC
Confidence 544 45567776532 334444445787 667754332221 11111 223 4567788999999999999 999
Q ss_pred EEEcccCCcchHHHHHHHHHhcCcc-----ccccC-----Ccccc---ccCHHHHHHHHHHcCCCc
Q psy16535 106 CVATGHNADDIAETVLMNVLRGDIA-----RLQRC-----TDIIT---YAYEKEIVMYAYYKKLVY 158 (333)
Q Consensus 106 ~ia~aH~~dD~~ET~l~nl~rg~~~-----~L~~~-----~~iiR---~i~k~EI~~y~~~~~l~~ 158 (333)
+|++|||.+|++||+ ....+|++. ++.++ ..++| .++|+||.+|+++.|+|+
T Consensus 331 ~l~~Gt~~~D~~E~~-~~~~~~s~~iks~~~l~gl~~~~~~~~i~PL~~l~K~EVr~la~~lglp~ 395 (525)
T 1gpm_A 331 WLAQGTIYPDVIESA-ASATGKAHVIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKIGLELGLPY 395 (525)
T ss_dssp EEECCCCHHHHHHTT-C----------------------CCEEECTTTTCCHHHHHHHHHHTTCCH
T ss_pred EEEeCCCCcchhhhc-CccccccccccccccccccccccCCcEEehhhcCCHHHHHHHHHHcCCCH
Confidence 999999999999995 112244321 12221 23555 899999999999999996
No 23
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=97.91 E-value=4.9e-06 Score=76.30 Aligned_cols=117 Identities=11% Similarity=0.056 Sum_probs=78.0
Q ss_pred CCCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhh------hcCC------CccchhhhhHHHHHHHHHhHhcc
Q psy16535 37 GVDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDII------TIGR------KNNCTFCGVFRRQALDRGAAMLG 103 (333)
Q Consensus 37 g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~------~~~~------~~~~~~cr~~Rr~~l~~~a~~~g 103 (333)
.+.++.++|+... ++...|+..++. .+++......+.. ..+. ..++..|...+..-|.++++++|
T Consensus 71 ~v~vv~idtg~~~--~et~~~~~~~~~~~gi~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~cc~~~K~~pl~~~l~~~~ 148 (252)
T 2o8v_A 71 DIPVILTDTGYLF--PETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELN 148 (252)
T ss_dssp TCEEEECCCSCBC--HHHHHHHHHHHHHTTCEEEECCCSSCHHHHHHHTCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred CCeEEEecCCCCC--HHHHHHHHHHHHHhCCceEEEcCCCCHHHHHHHcCCccccCCchHHHHHHHHHHHHHHHHHHhcC
Confidence 4556777787763 677889999999 8887654433221 0110 01233566667778899999999
Q ss_pred ccEEEcccCCcchHHHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcCCCcee
Q psy16535 104 VDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKKLVYFS 160 (333)
Q Consensus 104 ~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~l~~~~ 160 (333)
++++++||+.||..++..++.+. ......+++ .++++||..|++.+||||..
T Consensus 149 ~~~~~tG~r~dds~~R~~l~~~~-----~~~~~~~i~PL~~wt~~dV~~y~~~~~lp~~~ 203 (252)
T 2o8v_A 149 AQTWFAGLRREQSGSRANLPVLA-----IQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHP 203 (252)
T ss_dssp CSEEEECCCSTTTTCCTTSCSEE-----ESSSSEEECGGGSCCHHHHHHHHHHTTCCCCT
T ss_pred CcEEEEecccccccccccCceee-----cCCCeEEEechhhCCHHHHHHHHHHcCCCCCh
Confidence 99999999999965432222211 001112344 89999999999999999854
No 24
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=97.66 E-value=0.00011 Score=67.30 Aligned_cols=115 Identities=14% Similarity=0.091 Sum_probs=73.4
Q ss_pred cCCCEEEe--ccCCCCCCcHHHHHHHHHHh-hchhcccccc-hhh-hc-------CCCccchhhhhHHHHHHHHHhHhcc
Q psy16535 36 LGVDCVAT--GHNADDTDDIAETVLMNVLR-GDIARLQRCT-DII-TI-------GRKNNCTFCGVFRRQALDRGAAMLG 103 (333)
Q Consensus 36 ~g~~~Ia~--~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~-~v~-~~-------~~~~~~~~cr~~Rr~~l~~~a~~~g 103 (333)
.|.+++++ +|... +..+...+..+|+ -++++..... ++. .. .....|.+|+.+|+..+.++|+++|
T Consensus 50 ~g~~v~av~~~~~~~--~~~~~~~a~~~a~~lgi~~~~v~i~~~~~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g 127 (249)
T 3p52_A 50 LKENVFALLMPTQIS--NKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLVSLGNFAARIRMSLLYDYSALKN 127 (249)
T ss_dssp HTTSEEEEECCSCCS--SCHHHHHHHHHHHHHTCEEEECCCHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcEEEEEecCCCC--CHHHHHHHHHHHHHhCCCEEEEECcHHHHHHHHhccccCCccHhHHHHHHHHHHHHHHHHHCC
Confidence 36666654 44433 3567778888888 6677543222 211 11 1113788999999999999999999
Q ss_pred ccEEEcccCCcchHHHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcCCC--ceec
Q psy16535 104 VDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKKLV--YFST 161 (333)
Q Consensus 104 ~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~l~--~~~D 161 (333)
+.+++|||. +| +++ |-...-......++ .++|.||.++|+..|+| ++..
T Consensus 128 ~~vl~tgn~-se---~~~-----g~~t~~gd~~~~i~PL~~l~K~eV~~la~~~gip~~i~~k 181 (249)
T 3p52_A 128 SLVIGTSNK-SE---LLL-----GYGTIYGDLACAFNPIGSLYKSEIYALAKYLNLHENFIKK 181 (249)
T ss_dssp EEEBCCCCH-HH---HHH-----TCSCTTTTTCCSEETTTTSCHHHHHHHHHHTTCCHHHHHC
T ss_pred CeEEeCCCH-HH---HHc-----cchhhhccccCccccccCCcHHHHHHHHHHcCCcHHhcCC
Confidence 998888764 33 332 21110001123344 89999999999999999 4443
No 25
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=97.63 E-value=4.7e-05 Score=70.13 Aligned_cols=115 Identities=12% Similarity=0.046 Sum_probs=76.2
Q ss_pred CCCEEEeccCCCCCCcHHHHHHHHHHh-hch----hcccccch----hhh----cCC----CccchhhhhHHHHHHHHHh
Q psy16535 37 GVDCVATGHNADDTDDIAETVLMNVLR-GDI----ARLQRCTD----IIT----IGR----KNNCTFCGVFRRQALDRGA 99 (333)
Q Consensus 37 g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i----~~l~~~~~----v~~----~~~----~~~~~~cr~~Rr~~l~~~a 99 (333)
.+.+++++|+... .+...|+..++. .++ +......+ +.. .+. .+++..|...+..-|.+++
T Consensus 70 ~i~vv~iDtg~~~--~et~~~v~~~~~~~gl~~~~~l~v~~~~~~~~~~~~~~~~G~~~~~~~~~~cc~~~K~~pl~~~l 147 (261)
T 2oq2_A 70 MPELLFIDTLHHF--PQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDDDKYDYLAKVEPAHRAY 147 (261)
T ss_dssp CCEEEEECCSCBC--HHHHHHHHHHHHHHTGGGTCCCEEECSTTCSSHHHHHHHHCTTHHHHCHHHHHHHHTHHHHHHHH
T ss_pred CeeEEEecCCCCC--HHHHHHHHHHHHHhCCCCCCCeEEEecCCccCHHHHHHHhCCCccccChHHHHHHHhHHHHHHHH
Confidence 4567778888764 678899999999 777 65443332 111 111 1234445555567788899
Q ss_pred HhccccEEEcccCCcchHHHHHHHHHhcCccccc--cCCcc--cc---ccCHHHHHHHHHHcCCCcee
Q psy16535 100 AMLGVDCVATGHNADDIAETVLMNVLRGDIARLQ--RCTDI--IT---YAYEKEIVMYAYYKKLVYFS 160 (333)
Q Consensus 100 ~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~--~~~~i--iR---~i~k~EI~~y~~~~~l~~~~ 160 (333)
+++|++.+++||+.||... |.....+. ....+ ++ .++++||..|+..+||||..
T Consensus 148 ~~~g~~~~~tG~R~dds~~-------R~~~~~~~~~~~~~~~ki~PL~~wt~~dV~~Yi~~~~lp~~p 208 (261)
T 2oq2_A 148 KELHISAVFTGRRKSQGSA-------RSQLSIIEIDELNGILKINPLINWTFEQVKQYIDANNVPYNE 208 (261)
T ss_dssp HHTTCSEEECCCCGGGCGG-------GGGCCSEEEETTTTEEEECTTTTCCHHHHHHHHHHHTCCCCG
T ss_pred HHcCCCEEEEeccccchHH-------HccCCceeecCCCCeEEEechHhCCHHHHHHHHHHcCCCCCc
Confidence 9999999999999999522 32111111 11112 33 89999999999999999865
No 26
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=97.53 E-value=0.00018 Score=73.26 Aligned_cols=131 Identities=9% Similarity=0.060 Sum_probs=81.2
Q ss_pred hcCCCE--EEeccCCCCCCcHHHHHHHHHHh-h-chhcccccchhh---hcCC-Ccc---chhhhhHHHHHHHHHhHhcc
Q psy16535 35 MLGVDC--VATGHNADDTDDIAETVLMNVLR-G-DIARLQRCTDII---TIGR-KNN---CTFCGVFRRQALDRGAAMLG 103 (333)
Q Consensus 35 ~~g~~~--Ia~~H~ld~~~D~~Etfv~nl~r-g-~i~~l~~~~~v~---~~~~-~~~---~~~cr~~Rr~~l~~~a~~~g 103 (333)
..|.++ |.++|.+.. .++.+.++..++. . +++......+.. ...+ ..+ +.+|+..+++.|.++|++.|
T Consensus 278 ~~G~~v~~v~vd~g~~~-~~e~~~~~~~~~~~l~gi~~~~vd~~~~f~~~l~g~~~pe~kr~iig~~f~~vf~~~A~~~~ 356 (556)
T 3uow_A 278 IFKERFFGIFIDNGLLR-KNEAENVYTFLKSTFPDMNITKIDASENFLSNLQGVTDPEQKRKIIGKLFIEEFEKAVNNID 356 (556)
T ss_dssp HHGGGEEEEEEECSCSC-TTHHHHHHHHHHHHCTTSEEEEEECHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhCCeEEEEEEecCCCC-hHHHHHHHHHHHHhcCCCCeEEeccHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHcC
Confidence 335444 445677653 3567777788888 5 777544332211 1111 112 23455567899999999999
Q ss_pred c----cEEEcccCCcchHHHHHHHH----Hh-cCc-ccccc-C-Ccccc---ccCHHHHHHHHHHcCCC---ceecCCCC
Q psy16535 104 V----DCVATGHNADDIAETVLMNV----LR-GDI-ARLQR-C-TDIIT---YAYEKEIVMYAYYKKLV---YFSTECIF 165 (333)
Q Consensus 104 ~----~~ia~aH~~dD~~ET~l~nl----~r-g~~-~~L~~-~-~~iiR---~i~k~EI~~y~~~~~l~---~~~D~~n~ 165 (333)
. +++++|||.+|++|++.++- +. +.. .++.. + ..+++ .++|+||++|+++.|+| .+.-|||.
T Consensus 357 ~~~~~~~la~Gt~y~D~ies~~~~g~~~~iks~~n~~gl~~~~~~~li~PL~~l~K~EVr~la~~lGlp~~~~~r~P~p~ 436 (556)
T 3uow_A 357 IDINKTFLLQGTLYPDIIESKCSKNLSDTIKTHHNVGGLPKNLKFKLFEPFKYLFKDDVKTLSRELNLPEEITNRHPFPG 436 (556)
T ss_dssp CCGGGEEEECCCCHHHHHHHSCC-------------------CCCEEECTTTTCCHHHHHHHHHTTTCCHHHHHCCCCCT
T ss_pred CcccccccccCccChHHHhhcccccccceecccccccccccccccceEeecccCcHHHHHHHHHHcCCCHHHhCCCCCCC
Confidence 6 89999999999999986441 10 000 11211 1 12344 89999999999999999 55567775
Q ss_pred C
Q psy16535 166 A 166 (333)
Q Consensus 166 ~ 166 (333)
.
T Consensus 437 p 437 (556)
T 3uow_A 437 P 437 (556)
T ss_dssp T
T ss_pred C
Confidence 4
No 27
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=97.48 E-value=2.9e-05 Score=68.81 Aligned_cols=97 Identities=14% Similarity=0.039 Sum_probs=64.8
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhHHHHHHH
Q psy16535 17 NCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQALD 96 (333)
Q Consensus 17 ~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~l~ 96 (333)
+|..|..+|+.+|.++++ |+++|++|||+| |++||+.+ .++..+....++. -.+|.. .+.+..+.
T Consensus 83 ~~~~c~~~~~~~l~~~A~--g~~~i~tGh~~d---D~~et~~~----~gl~~~~~~~~~~--iirPLl----~~~k~eI~ 147 (203)
T 3k32_A 83 PGPAIQYVHKTVLEILAD--EYSILADGTRRD---DRVPKLSY----SEIQSLEMRKNIQ--YITPLM----GFGYKTLR 147 (203)
T ss_dssp SHHHHHHHHHHHHHHHTT--TCSEEECCCCTT---CCSSCCCH----HHHHHHHHHHTCE--EECGGG----GCCHHHHH
T ss_pred CccHHHHHHHHHHHHHhc--CCCEEEECCCcc---cchhhcch----hhccCcccccCCe--EEeccC----CCCHHHHH
Confidence 567788888889988887 999999999999 78887644 2222111100000 113322 25678899
Q ss_pred HHhHhccccEEEcccCCcc--hHHHHHHHHHhcCc
Q psy16535 97 RGAAMLGVDCVATGHNADD--IAETVLMNVLRGDI 129 (333)
Q Consensus 97 ~~a~~~g~~~ia~aH~~dD--~~ET~l~nl~rg~~ 129 (333)
++|+++ +.|+.+..|.|. -.|+.++++++..+
T Consensus 148 ~~a~~~-l~~~~~~sn~~~~~dy~~~~r~~l~~~~ 181 (203)
T 3k32_A 148 HLASEF-FILEEIKSGTKLSSDYEAEIRHILKERG 181 (203)
T ss_dssp HHHHHH-EEEEEECC------CTHHHHHHHHHHHT
T ss_pred HHHHHh-CCcccCCCCCCCCCcHHHHHHHHHhhcC
Confidence 999998 999999999653 24689998988754
No 28
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=97.33 E-value=0.00093 Score=61.44 Aligned_cols=114 Identities=11% Similarity=0.027 Sum_probs=72.9
Q ss_pred EEEeccCCCCCCcHHHHHHHHHHh-hchhcccccc-hh-hhc----CC---CccchhhhhHHHHHHHHHhHhccccEEEc
Q psy16535 40 CVATGHNADDTDDIAETVLMNVLR-GDIARLQRCT-DI-ITI----GR---KNNCTFCGVFRRQALDRGAAMLGVDCVAT 109 (333)
Q Consensus 40 ~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~-~v-~~~----~~---~~~~~~cr~~Rr~~l~~~a~~~g~~~ia~ 109 (333)
.+.++|... ++.+...+..+|+ -+++...... +. ... .. ...|.+|+.+|+..+.++|++.|+.+|+|
T Consensus 55 av~~~~~~~--~~~e~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~t 132 (268)
T 1xng_A 55 ALLMPSSVS--MPENKTDALNLCEKFSIPYTEYSIAPYDAIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGT 132 (268)
T ss_dssp EEECCCSSS--CHHHHHHHHHHHHHHTCCEEECCCHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCC
T ss_pred EEEeCCCCC--CHHHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHCCCEEEEC
Confidence 444555543 3677888999998 6666543221 11 111 11 12566777899999999999999999999
Q ss_pred ccCCcchHHHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcCCCc-eecCCC
Q psy16535 110 GHNADDIAETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKKLVY-FSTECI 164 (333)
Q Consensus 110 aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~l~~-~~D~~n 164 (333)
||. .|++ +|.+........+++ .++|.||.+|++..|+|. ..+.||
T Consensus 133 g~~----~E~~-----~Gy~t~~gd~~~~i~PL~~l~K~ev~~la~~~gip~~i~~k~p 182 (268)
T 1xng_A 133 SNK----SERM-----LGYGTLFGDLACAINPIGELFKTEVYELARRLNIPKKILNKPP 182 (268)
T ss_dssp CCH----HHHH-----HTCSCTTTTTCCSEETTTTSCHHHHHHHHHHTTCCHHHHTSCC
T ss_pred CcH----HHHh-----cCcccccCCCCeeEEecCCCCHHHHHHHHHHcCCcHHHhcCCC
Confidence 974 4554 343221111123444 899999999999999994 334444
No 29
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=97.22 E-value=0.00025 Score=64.82 Aligned_cols=106 Identities=13% Similarity=-0.040 Sum_probs=68.8
Q ss_pred EEEeccCCCCCCcHHHHHHHHHHh-hchhcccccch-h-hh----cCC----CccchhhhhHHHHHHHHHhHhccccEEE
Q psy16535 40 CVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTD-I-IT----IGR----KNNCTFCGVFRRQALDRGAAMLGVDCVA 108 (333)
Q Consensus 40 ~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~-v-~~----~~~----~~~~~~cr~~Rr~~l~~~a~~~g~~~ia 108 (333)
.+.++|+. + .+...+..+|+ -+++......+ . .. ... ...|.+|..+|+..+.++|++.|+.+|+
T Consensus 53 av~~~~~~---~-~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~l~~~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~ 128 (257)
T 2e18_A 53 GLIMPYFE---N-KDVEDAKLVAEKLGIGYKVINIKPIVDSFVENLELNLDRKGLGNIMSRTRMIMLYAHANSLGRIVLG 128 (257)
T ss_dssp EEECCSSC---S-THHHHHHHHHHHHTCEEEECCCHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred EEEeCCCC---c-hHHHHHHHHHHHhCCCEEEEEChHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 34455553 2 55778888888 66665432221 1 11 111 1145556679999999999999999999
Q ss_pred cccCCcchHHHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcCCCc
Q psy16535 109 TGHNADDIAETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKKLVY 158 (333)
Q Consensus 109 ~aH~~dD~~ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~l~~ 158 (333)
|||+.||. +|.+..-.....+++ .++|.||..|++.+|+|+
T Consensus 129 tg~~~e~~---------~Gy~t~~g~~~~~i~Pl~~l~K~ev~~la~~~gip~ 172 (257)
T 2e18_A 129 TSNRSEFL---------TGYFTKWGDGASDYAPIINLYKTEVWEIAKRIGVPE 172 (257)
T ss_dssp CCCHHHHH---------HTCSCTTSTTCSSBCTTTTSCHHHHHHHHHHHTCCH
T ss_pred cCchhHHh---------cCCeeccCCCccCEeecCCCcHHHHHHHHHHcCCCH
Confidence 99987763 343221111122344 899999999999999995
No 30
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=97.14 E-value=0.0033 Score=57.43 Aligned_cols=117 Identities=11% Similarity=0.031 Sum_probs=71.7
Q ss_pred HHHhcCCCEEEe--ccCCCCCCcHHHHHHHHHHh-hchhcccccc-hh----hh-c----C-CCccchhh-----hhHHH
Q psy16535 32 GAAMLGVDCVAT--GHNADDTDDIAETVLMNVLR-GDIARLQRCT-DI----IT-I----G-RKNNCTFC-----GVFRR 92 (333)
Q Consensus 32 ~~~~~g~~~Ia~--~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~-~v----~~-~----~-~~~~~~~c-----r~~Rr 92 (333)
++.+.+...+++ +|.. .++.+...+..+|+ -+++...... +. .. . . ...+|..| +.+|+
T Consensus 48 l~~~~~~~~~av~~~~~~--~~~~~~~~a~~~a~~lgi~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~r~R~ 125 (249)
T 3fiu_A 48 LAVKTGLPTTALILPSDN--NQHQDMQDALELIEMLNIEHYTISIQPAYEAFLASTQSFTNLQNNRQLVIKGNAQARLRM 125 (249)
T ss_dssp HHHHTTSCEEEEECCCTT--SCHHHHHHHHHHHHHHTCEEEECCCHHHHHHHHHHTGGGC------CHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEecCCC--CCHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHHHHhhccCCCCcChhHHHHHHHHHHH
Confidence 344444454443 3332 24677888888998 6666543221 11 00 0 1 13477777 78999
Q ss_pred HHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcccccc-CCcccc---ccCHHHHHHHHHHcCCC--cee
Q psy16535 93 QALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQR-CTDIIT---YAYEKEIVMYAYYKKLV--YFS 160 (333)
Q Consensus 93 ~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~~L~~-~~~iiR---~i~k~EI~~y~~~~~l~--~~~ 160 (333)
..+..+|+++|+.+++|||. + |++. |-.. +.+ ...+++ .++|.||.++|+..|+| ++.
T Consensus 126 ~~l~~~A~~~g~~vl~TGn~-s---E~~~-----G~~t-~~gd~~~~i~PL~~l~K~eVr~lA~~lglp~~i~~ 189 (249)
T 3fiu_A 126 MYLYAYAQQYNRIVIGTDNA-C---EWYM-----GYFT-KFGDGAADILPLVNLKKSQVFELGKYLDVPKNILD 189 (249)
T ss_dssp HHHHHHHHHHTEEEBCCCCH-H---HHHH-----TCSC-TTTTTCCSBCTTTTCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHcCCEEEECCCH-H---HHhc-----Cchh-ccCCCCcceeecccCcHHHHHHHHHHcCCcHHHcc
Confidence 99999999999999999954 3 4442 3111 111 122333 89999999999999999 554
No 31
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=96.97 E-value=0.0016 Score=61.45 Aligned_cols=113 Identities=13% Similarity=-0.049 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHh-h-chhcccccchhhhcCCCccchhhhhHHHHHHHHHhHh
Q psy16535 24 FRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLR-G-DIARLQRCTDIITIGRKNNCTFCGVFRRQALDRGAAM 101 (333)
Q Consensus 24 ~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g-~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~l~~~a~~ 101 (333)
+---....++.+.|++++++.-+. ++.++..+..+|+ - .+.+ . ..+ ++.+...+| ..+ ++|++
T Consensus 189 vDS~vaa~ll~~~G~~v~~v~~~~---~~~~~~~a~~~a~~l~~~~~-~--~~i-------~~~vv~~~~-~~~-~~A~~ 253 (307)
T 1vbk_A 189 ELSALAIFLMMKRGVEVIPVYIGK---DDKNLEKVRSLWNLLKRYSY-G--SKG-------FLVVAESFD-RVL-KLIRD 253 (307)
T ss_dssp HHHHHHHHHHHHBTCEEEEEEESC---SSHHHHHHHHHHHHHHTTCT-T--SCC-------CCEEESSHH-HHH-HHHHH
T ss_pred CcHHHHHHHHHhCCCeEEEEEEEE---CHHHHHHHHHHHHHHhhhcc-C--CCC-------cEEEeCCCH-HHH-HHHHH
Confidence 444444556677899888774332 3667777888887 2 1100 0 001 111100011 122 89999
Q ss_pred ccccEEEcccCCcchH-HHHHHHHHhcCccccccCCcccc---ccCHHHHHHHHHHcCC
Q psy16535 102 LGVDCVATGHNADDIA-ETVLMNVLRGDIARLQRCTDIIT---YAYEKEIVMYAYYKKL 156 (333)
Q Consensus 102 ~g~~~ia~aH~~dD~~-ET~l~nl~rg~~~~L~~~~~iiR---~i~k~EI~~y~~~~~l 156 (333)
.|+++|+||||++|.+ +|+.++.+... ...+++| .++|+||.++|++.|+
T Consensus 254 ~ga~~I~tG~~~~~~~~qt~~l~~~~~~-----~~~~vl~PL~~~~K~eI~~~a~~iGl 307 (307)
T 1vbk_A 254 FGVKGVIKGLRPNDLNSEVSEITEDFKM-----FPVPVYYPLIALPEEYIKSVKERLGL 307 (307)
T ss_dssp HTCCEEECCCCGGGCCTTCHHHHHHHHH-----CSSCEECHHHHSCHHHHHHHHHHHTC
T ss_pred cCCCEEEECcccchhccccHHHhhhccC-----cCCeEEEccCCCCHHHHHHHHHHcCC
Confidence 9999999999998754 56655444321 1235666 8999999999999875
No 32
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=96.96 E-value=0.00068 Score=62.75 Aligned_cols=119 Identities=20% Similarity=0.120 Sum_probs=73.0
Q ss_pred CCCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchh---hh----cCC-----CccchhhhhHHHHHHHHHhHhcc
Q psy16535 37 GVDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDI---IT----IGR-----KNNCTFCGVFRRQALDRGAAMLG 103 (333)
Q Consensus 37 g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v---~~----~~~-----~~~~~~cr~~Rr~~l~~~a~~~g 103 (333)
.+.++.++|+... .+...|+..++. .+++......+. .. .+. .+++..|...+..-+.++++.
T Consensus 79 ~i~vv~iDtg~~~--~et~~~v~~~~~~~gi~l~v~~~~~~~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~r~l~~-- 154 (275)
T 2goy_A 79 NVKVFSLDTGRLH--PETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAG-- 154 (275)
T ss_dssp TCCEEEECCSCCC--HHHHHHHHHHHHHHTCCCEEECCCHHHHHHHHHHHCSCHHHHHCTHHHHHHHTHHHHHHHHHT--
T ss_pred CceEEEEeCCCCC--HHHHHHHHHHHHHHCCeEEEEeCCccCHHHHHHHhCCCCccccCHHHHHHHHHHHHHHHHHHh--
Confidence 4667778888764 678899999999 788765443332 11 111 123444555556667777764
Q ss_pred ccEEEcccCCcchH-HHHHHHHHhcCcccc--ccCC-cccc---ccCHHHHHHHHHHcCCCcee
Q psy16535 104 VDCVATGHNADDIA-ETVLMNVLRGDIARL--QRCT-DIIT---YAYEKEIVMYAYYKKLVYFS 160 (333)
Q Consensus 104 ~~~ia~aH~~dD~~-ET~l~nl~rg~~~~L--~~~~-~iiR---~i~k~EI~~y~~~~~l~~~~ 160 (333)
.+.+++||+.||.. ....++.+..+. ++ ...+ ..++ .++++||..|+..+||||..
T Consensus 155 ~~~~itG~r~dds~~~R~~~~~~~~d~-~~~~~~~g~~~i~PL~~wt~~dV~~Yi~~~~lp~~~ 217 (275)
T 2goy_A 155 VRAWATGQRRDQSPGTRSQVAVLEIDG-AFSTPEKPLYKFNPLSSMTSEEVWGYIRMLELPYNS 217 (275)
T ss_dssp CSEEECCCCGGGTTSCSCCCCSEEECT-TTCCSSSCCEEECTTTTCCHHHHHHHHHHTTCCCCG
T ss_pred cCchhcCchhhhhhhhhhhCccccccc-ccccCCCCeEEEechHhCCHHHHHHHHHHhCCCCCh
Confidence 56899999999952 111111111110 00 0011 1233 89999999999999999854
No 33
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=96.57 E-value=0.0027 Score=62.19 Aligned_cols=75 Identities=12% Similarity=0.090 Sum_probs=56.0
Q ss_pred hHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhhhcCCCccchhhhhHHHHH
Q psy16535 16 NNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIITIGRKNNCTFCGVFRRQA 94 (333)
Q Consensus 16 ~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~ 94 (333)
..|..||+.++.++.+++++.|+++|++|||+| |.++++++++.. .... +... .+|.. .+.+..
T Consensus 269 ~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~d---D~ae~~l~~l~~~~~~~---~~~v-----irPL~----~l~K~e 333 (413)
T 2c5s_A 269 YSMTVMRRMMMRITERIAEERNALAITTGESLG---QVASQTLDSMHTINEVT---NYPV-----IRPLI----TMDKLE 333 (413)
T ss_dssp GHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSS---STTSCCHHHHHHHGGGC---CSCE-----ECTTT----TCCHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCCEEEEcccch---hhHHHHHHHHhcccccC---CCEE-----EeccC----CCCHHH
Confidence 478999999999999999999999999999999 788888888875 2110 1000 12221 245788
Q ss_pred HHHHhHhcccc
Q psy16535 95 LDRGAAMLGVD 105 (333)
Q Consensus 95 l~~~a~~~g~~ 105 (333)
+.++|++.|+.
T Consensus 334 I~~~a~~~Gl~ 344 (413)
T 2c5s_A 334 IIKIAEEIGTY 344 (413)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHcCCC
Confidence 89999999973
No 34
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=96.52 E-value=0.0074 Score=59.31 Aligned_cols=79 Identities=13% Similarity=0.042 Sum_probs=50.0
Q ss_pred hhhhhHHHHHHHHHhHhccccEEEcccCC--cchHHHHHHHHHhcCccccccCCccccc-------cCHHHHHHHHHHcC
Q psy16535 85 TFCGVFRRQALDRGAAMLGVDCVATGHNA--DDIAETVLMNVLRGDIARLQRCTDIITY-------AYEKEIVMYAYYKK 155 (333)
Q Consensus 85 ~~cr~~Rr~~l~~~a~~~g~~~ia~aH~~--dD~~ET~l~nl~rg~~~~L~~~~~iiR~-------i~k~EI~~y~~~~~ 155 (333)
..||..-...+.++|++.|+++|++|||. +|+..- ...++.....++-..| ++. ++|+||.+||+++|
T Consensus 102 ~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~kgnDq~rf--~~~~~al~p~~~IiaP-l~d~~~l~~~lsK~Eir~~A~e~G 178 (421)
T 1vl2_A 102 AIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVRF--ELTYAALNPNLKVISP-WKDPEFLAKFKGRTDLINYAMEKG 178 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHH--HHHHHHHCTTSEEECG-GGCHHHHHHTC--CHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHcCCCEEEECCeeCCCChHHH--HHHHHhcCCCCeEEcc-cCchhhccccCCHHHHHHHHHHcC
Confidence 34676667889999999999999999997 576421 1111221112221122 333 79999999999999
Q ss_pred CCcee-cCCCCC
Q psy16535 156 LVYFS-TECIFA 166 (333)
Q Consensus 156 l~~~~-D~~n~~ 166 (333)
||+.. ..+|++
T Consensus 179 lp~~~t~~kp~S 190 (421)
T 1vl2_A 179 IPIKVSKKRPYS 190 (421)
T ss_dssp CCCCSSCCCSSE
T ss_pred CCcccCCCCCCc
Confidence 99864 345543
No 35
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=96.09 E-value=0.0056 Score=57.53 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=46.4
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhccc---ccchhhhc-CCCccchhhhhHHH
Q psy16535 17 NCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQ---RCTDIITI-GRKNNCTFCGVFRR 92 (333)
Q Consensus 17 ~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~---~~~~v~~~-~~~~~~~~cr~~Rr 92 (333)
.|..|+..|+.+|.+++++.|+++|++|||.| |+.|++. ++..+. +..+.... ..+|.. .+.+
T Consensus 100 ~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~d---D~~Et~~------~iks~~~~~~l~~~~~~~virPL~----~l~K 166 (308)
T 2dpl_A 100 KRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAP---DWIESQG------KIKSHHNVGGLPEKLNLKLIEPLR----DLYK 166 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC------------------------------CCCEEECTTT----TCCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcCEEEECCCCc---cchhhcc------chhhhhccccCCccCCCeEEEEcc----cCCH
Confidence 47889999999999999999999999999999 8888842 222111 11110000 112221 2568
Q ss_pred HHHHHHhHhccccE
Q psy16535 93 QALDRGAAMLGVDC 106 (333)
Q Consensus 93 ~~l~~~a~~~g~~~ 106 (333)
..+.++++++|+.+
T Consensus 167 ~EI~~~a~~~glp~ 180 (308)
T 2dpl_A 167 DEVRELAKFLGLPE 180 (308)
T ss_dssp HHHHHHHHHTTCCH
T ss_pred HHHHHHHHHhCCCc
Confidence 88999999999874
No 36
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=95.65 E-value=0.0011 Score=64.32 Aligned_cols=93 Identities=20% Similarity=0.131 Sum_probs=57.0
Q ss_pred chHhhHHHHH-HHHHHHHHHHh-cCCCEEEeccCCCCCCcHHHHHHHHHHhhc-hh-----cccccchhh-hcCCCccch
Q psy16535 15 KNNCTFCGVF-RRQALDRGAAM-LGVDCVATGHNADDTDDIAETVLMNVLRGD-IA-----RLQRCTDII-TIGRKNNCT 85 (333)
Q Consensus 15 ~~~~~~~~~~-r~~~L~~~~~~-~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~-i~-----~l~~~~~v~-~~~~~~~~~ 85 (333)
.++|..|.+. |+.+|.+++.+ +|+++|++||+++ |..++..++++++. .. ++.....-. .....|+
T Consensus 108 pnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~---d~~~~~~~~l~rg~~~~kdqsy~L~~l~~~~l~~~i~PL-- 182 (380)
T 2der_A 108 PNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVR---RADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPV-- 182 (380)
T ss_dssp CCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCE---EEEETTEEEEECCSSTTTCCGGGGSSCCHHHHHHEECCG--
T ss_pred CChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccc---cccccchHHHhcccccccccceeecCCChhhcceeEccC--
Confidence 5799999885 89999999998 9999999999999 66566666666632 10 111111100 0111222
Q ss_pred hhhhHHHHHHHHHhHhccccEEEcccCCc
Q psy16535 86 FCGVFRRQALDRGAAMLGVDCVATGHNAD 114 (333)
Q Consensus 86 ~cr~~Rr~~l~~~a~~~g~~~ia~aH~~d 114 (333)
. .+.+..+.++|+++|+.++....+.|
T Consensus 183 -~-~~~K~eVr~~A~~~Gl~~~~kp~s~~ 209 (380)
T 2der_A 183 -G-ELEKPQVRKIAEDLGLVTAKKKDSTG 209 (380)
T ss_dssp -G-GSCHHHHHHHHHHTTCC---------
T ss_pred -C-CCCHHHHHHHHHHcCCCCccCCCCCC
Confidence 1 25688899999999998765555544
No 37
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=95.54 E-value=0.0027 Score=64.16 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=51.7
Q ss_pred hHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhh-chhcc---cccchhhhcC-CCccchhhhhH
Q psy16535 16 NNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRG-DIARL---QRCTDIITIG-RKNNCTFCGVF 90 (333)
Q Consensus 16 ~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg-~i~~l---~~~~~v~~~~-~~~~~~~cr~~ 90 (333)
..|..|++.++.+|.+++++.|+++|++|||++ |.+|+++++--++ .+..+ .+........ .+|.. .+
T Consensus 309 ~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~~d---D~~Et~~~~~g~~~~ik~~~~l~gl~~~~~~~iirPL~----~l 381 (527)
T 3tqi_A 309 EKRKIAGEQFIRVFEEQAKKLNVKWLGQGTIYP---DVIESAKTKTGKGHIIKTHHNVGGLPLNMELKLIEPLR----EL 381 (527)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCCEEECCCCHH---HHHCC--------------------------CEECTTT----TC
T ss_pred hhhhhhHHHHHHHHHHHHHHcCCCEEEccccCC---ccccccccCCChhheeeeecccccCcccccCccccchh----cC
Confidence 368889999999999999999999999999999 9999998774221 12211 1111111111 12221 26
Q ss_pred HHHHHHHHhHhccccE
Q psy16535 91 RRQALDRGAAMLGVDC 106 (333)
Q Consensus 91 Rr~~l~~~a~~~g~~~ 106 (333)
.+..+.++++++|+.+
T Consensus 382 ~K~EIr~~a~~lGlp~ 397 (527)
T 3tqi_A 382 FKDEVRKLGLELGLPA 397 (527)
T ss_dssp CHHHHHHHHHHHTCCH
T ss_pred CHHHHHHHHHHcCCCh
Confidence 7899999999999873
No 38
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=94.98 E-value=0.025 Score=49.35 Aligned_cols=78 Identities=12% Similarity=-0.022 Sum_probs=47.3
Q ss_pred chHhhHHHHHHH-HHHHHHHHhcCCCEEEeccCCCCCCcHHH------HHHHHHHh-hchhcccccchhhhcCCCccchh
Q psy16535 15 KNNCTFCGVFRR-QALDRGAAMLGVDCVATGHNADDTDDIAE------TVLMNVLR-GDIARLQRCTDIITIGRKNNCTF 86 (333)
Q Consensus 15 ~~~~~~~~~~r~-~~L~~~~~~~g~~~Ia~~H~ld~~~D~~E------tfv~nl~r-g~i~~l~~~~~v~~~~~~~~~~~ 86 (333)
.+.|..||..+| .++.+++++.|+++|++|||.| |+.+ +|+..+.. ..... ..++. ..+|..
T Consensus 90 ~~~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~d---d~~~~~~~~~~~~~~l~~~~~~~~---~~~~~--ii~PL~-- 159 (219)
T 3bl5_A 90 PSTFVPGRNLVFLSFASILAYQIGARHIITGVCET---DFSGYPDCRDEFVKSCNVTVNLAM---EKPFV--IHTPLM-- 159 (219)
T ss_dssp -CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC-------CCGGGSHHHHHHHHHHHHHHH---TSCCE--EECTTT--
T ss_pred CCceeechHHHHHHHHHHHHHHcCCCEEEEecccc---ccCCCCCCCHHHHHHHHHHHHhcc---CCCeE--EEeccc--
Confidence 446888999999 7889999999999999999999 5543 22333222 10000 00000 012222
Q ss_pred hhhHHHHHHHHHhHhccc
Q psy16535 87 CGVFRRQALDRGAAMLGV 104 (333)
Q Consensus 87 cr~~Rr~~l~~~a~~~g~ 104 (333)
.+.+..+.++++++|+
T Consensus 160 --~~~K~ei~~~a~~~gl 175 (219)
T 3bl5_A 160 --WLNKAETWKLADELGA 175 (219)
T ss_dssp --TCCHHHHHHHHHHTTC
T ss_pred --cCCHHHHHHHHHHcCC
Confidence 2567889999999998
No 39
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=94.67 E-value=0.0015 Score=63.22 Aligned_cols=88 Identities=25% Similarity=0.280 Sum_probs=55.6
Q ss_pred chHhhHHHH-HHHHHHHHHHHhcCCCEEEeccCCCCCCcHH-HHHHHHHHhhc-hh-----cccccchhhhcCCCccchh
Q psy16535 15 KNNCTFCGV-FRRQALDRGAAMLGVDCVATGHNADDTDDIA-ETVLMNVLRGD-IA-----RLQRCTDIITIGRKNNCTF 86 (333)
Q Consensus 15 ~~~~~~~~~-~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~-Etfv~nl~rg~-i~-----~l~~~~~v~~~~~~~~~~~ 86 (333)
.++|..|.+ +|+.+|.++++++|+++|++||+++ |.. ++..++++++. .. ++.....- .. .....++
T Consensus 100 pnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~---d~~~~~~~~~l~rg~d~~kdqsyfL~~l~~~-~l-~~~i~PL 174 (376)
T 2hma_A 100 PNPDVMCNKEIKFKAFLDYAITLGADYVATGHYAR---VARDEDGTVHMLRGVDNGKDQTYFLSQLSQE-QL-QKTMFPL 174 (376)
T ss_dssp CCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEE---EEECSSSCEEEEECSSTTTCCGGGGTTCCHH-HH-TTEECTT
T ss_pred CChHHHHHHHHHHHHHHHHHHhCCCCEEEECcchh---hhhCCCchhhhhhccccccccchhccCCChh-hc-CcEEecC
Confidence 579999966 4789999999999999999999999 554 44444444432 10 11111110 00 0111112
Q ss_pred hhhHHHHHHHHHhHhccccEEE
Q psy16535 87 CGVFRRQALDRGAAMLGVDCVA 108 (333)
Q Consensus 87 cr~~Rr~~l~~~a~~~g~~~ia 108 (333)
. .+.+..+.++|+++|+.+..
T Consensus 175 ~-~~~K~eVr~~A~~~gl~~~~ 195 (376)
T 2hma_A 175 G-HLEKPEVRRLAEEAGLSTAK 195 (376)
T ss_dssp T-TCCHHHHHHHHHHTTCTTTT
T ss_pred c-CCCHHHHHHHHHHcCCCccc
Confidence 1 25678889999999998543
No 40
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=92.67 E-value=0.058 Score=53.95 Aligned_cols=84 Identities=14% Similarity=0.025 Sum_probs=49.1
Q ss_pred HhhHHHHHHHHHHHHHHHhc-CCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcC-CCccchhhhhHHHHH
Q psy16535 17 NCTFCGVFRRQALDRGAAML-GVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIG-RKNNCTFCGVFRRQA 94 (333)
Q Consensus 17 ~~~~~~~~r~~~L~~~~~~~-g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~-~~~~~~~cr~~Rr~~ 94 (333)
.|..|+..|+..|.++++++ |+++|++|||.+ |..|+..+.. .+.+..+.....+.... ..-..++ +.+.+..
T Consensus 287 ~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~~~---D~~Et~~~g~-~~~iks~~~l~~l~~~~~~~ii~PL-~~l~K~E 361 (503)
T 2ywb_A 287 KRKIIGREFVAAFSQVARERGPFRFLAQGTLYP---DVIESAGGHG-AAKIKSHHNVGGLPEDLEFELLEPF-RLLFKDE 361 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCSEEECCCCHH---HHHC------------------CCCSSCCCEEECTT-TTCCHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCEEEECCcCc---cchhhccCCc-ccccccccccccccccccCceEehh-hcCCHHH
Confidence 57888999999999999999 999999999999 8988865310 01122111111111000 0001111 1256788
Q ss_pred HHHHhHhcccc
Q psy16535 95 LDRGAAMLGVD 105 (333)
Q Consensus 95 l~~~a~~~g~~ 105 (333)
+.++++++|+.
T Consensus 362 Vr~~a~~~glp 372 (503)
T 2ywb_A 362 VRELALLLGLP 372 (503)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHcCCC
Confidence 99999999976
No 41
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=89.49 E-value=0.12 Score=51.83 Aligned_cols=81 Identities=15% Similarity=0.122 Sum_probs=49.6
Q ss_pred HhhHHHHHHHHHHHHHHHhc-CCCEEEeccCCCCCCcHHHHHHHHHHhhc--hh---cccccchhhhc-CCCccchhhhh
Q psy16535 17 NCTFCGVFRRQALDRGAAML-GVDCVATGHNADDTDDIAETVLMNVLRGD--IA---RLQRCTDIITI-GRKNNCTFCGV 89 (333)
Q Consensus 17 ~~~~~~~~r~~~L~~~~~~~-g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~--i~---~l~~~~~v~~~-~~~~~~~~cr~ 89 (333)
.|..|+..++.+|.++++++ |++.|++|||.+ |..|++ ....+|. +. .+.+....... ..+|.. .
T Consensus 307 ~~~~~~~~~~~~l~~~A~~~~g~~~l~~Gt~~~---D~~E~~-~~~~~~s~~iks~~~l~gl~~~~~~~~i~PL~----~ 378 (525)
T 1gpm_A 307 KRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYP---DVIESA-ASATGKAHVIKSHHNVGGLPKEMKMGLVEPLK----E 378 (525)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSEEEEECCCCHH---HHHHTT-C----------------------CCEEECTTT----T
T ss_pred hhhhhhHHHHHHHHHHHHhcCCCCEEEeCCCCc---chhhhc-CccccccccccccccccccccccCCcEEehhh----c
Confidence 47889999999999999999 999999999999 899885 1011211 11 11111111111 112221 2
Q ss_pred HHHHHHHHHhHhcccc
Q psy16535 90 FRRQALDRGAAMLGVD 105 (333)
Q Consensus 90 ~Rr~~l~~~a~~~g~~ 105 (333)
+.+..+.++++++|+.
T Consensus 379 l~K~EVr~la~~lglp 394 (525)
T 1gpm_A 379 LFKDEVRKIGLELGLP 394 (525)
T ss_dssp CCHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHcCCC
Confidence 4577899999999965
No 42
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=89.35 E-value=0.63 Score=45.16 Aligned_cols=76 Identities=18% Similarity=0.167 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhH---HHHHH
Q psy16535 19 TFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVF---RRQAL 95 (333)
Q Consensus 19 ~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~---Rr~~l 95 (333)
+.||.+++..|.+++++.|+++|++||+.|+ .|+.+. -..+. .+.+ ++. ... |. +.+ .+..+
T Consensus 89 ~~~R~~~~~~L~~~A~~~G~~~IatG~~~d~-nDq~~f-~~g~~-----~l~p--~l~--ii~-PL---~~~~~~tK~eI 153 (400)
T 1kor_A 89 SIARPLIAKHLVRIAEEEGAEAIAHGATGKG-NDQVRF-ELTAY-----ALKP--DIK--VIA-PW---REWSFQGRKEM 153 (400)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEECCCCTTS-SHHHHH-HHHHH-----HHCT--TCE--EEC-GG---GTCCCCSHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCEEEECCCCCc-ccHHHH-HHHHH-----hcCC--CCE--EEE-ee---cccccCCHHHH
Confidence 3489999999999999999999999999962 166652 21111 1111 000 011 11 113 67889
Q ss_pred HHHhHhccccEEEc
Q psy16535 96 DRGAAMLGVDCVAT 109 (333)
Q Consensus 96 ~~~a~~~g~~~ia~ 109 (333)
.++|+++|+.+..+
T Consensus 154 ~~ya~~~gip~~~~ 167 (400)
T 1kor_A 154 IAYAEAHGIPVPVT 167 (400)
T ss_dssp HHHHHHTTCCCC--
T ss_pred HHHHHHcCCCcccC
Confidence 99999999987643
No 43
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=87.57 E-value=0.23 Score=43.87 Aligned_cols=35 Identities=23% Similarity=0.098 Sum_probs=30.2
Q ss_pred chHhhHHHHHHHHHH-HHHHHhcCCCEEEeccCCCC
Q psy16535 15 KNNCTFCGVFRRQAL-DRGAAMLGVDCVATGHNADD 49 (333)
Q Consensus 15 ~~~~~~~~~~r~~~L-~~~~~~~g~~~Ia~~H~ld~ 49 (333)
.+.|..||..++..+ ..++++.|+++|++|||.++
T Consensus 93 ~~~~~~~R~~~~~~la~~~A~~~g~~~I~~G~~~~D 128 (232)
T 2pg3_A 93 PNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETD 128 (232)
T ss_dssp -CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCS
T ss_pred CCCeEechHHHHHHHHHHHHHHcCcCEEEEccCccc
Confidence 346888999998777 89999999999999999984
No 44
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=87.48 E-value=0.89 Score=44.34 Aligned_cols=81 Identities=15% Similarity=0.082 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhch-hcccccchhhhcCCCccchhhhhH-HHHHHHHH
Q psy16535 21 CGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDI-ARLQRCTDIITIGRKNNCTFCGVF-RRQALDRG 98 (333)
Q Consensus 21 ~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i-~~l~~~~~v~~~~~~~~~~~cr~~-Rr~~l~~~ 98 (333)
+|.+++.+|.+++++.|+++|++|||.++ .|+.+ |- +....+ |.+....+... . .+...+ .+..+.++
T Consensus 95 aRp~i~~~l~~~A~~~Ga~~IatGh~~~~-nDq~r-f~--lg~~~l~p~l~ii~Pl~d-----~-~~ll~~~sK~EI~~y 164 (413)
T 2nz2_A 95 ARPCIARKQVEIAQREGAKYVSHGATGKG-NDQVR-FE--LSCYSLAPQIKVIAPWRM-----P-EFYNRFKGRNDLMEY 164 (413)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEECCCCTTS-SHHHH-HH--HHHHHHCTTCEEECGGGC-----H-HHHTTCC-CHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCEEEECCcCcc-cchHH-HH--HHHHhcCCCCceeccccc-----h-hhhccCCCHHHHHHH
Confidence 56678999999999999999999999842 26655 32 221111 11111111110 0 000123 67889999
Q ss_pred hHhccccEEEccc
Q psy16535 99 AAMLGVDCVATGH 111 (333)
Q Consensus 99 a~~~g~~~ia~aH 111 (333)
|+++|+.+..++.
T Consensus 165 A~~~Gip~~~~~~ 177 (413)
T 2nz2_A 165 AKQHGIPIPVTPK 177 (413)
T ss_dssp HHHTTCCCCSSCC
T ss_pred HHHcCCCeecCCC
Confidence 9999999875543
No 45
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=84.89 E-value=3.7 Score=38.12 Aligned_cols=103 Identities=10% Similarity=0.010 Sum_probs=61.3
Q ss_pred CCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhhhcCCCccchhhhhHHHHHHHHHhHh-ccccEEEcccCCcc
Q psy16535 38 VDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIITIGRKNNCTFCGVFRRQALDRGAAM-LGVDCVATGHNADD 115 (333)
Q Consensus 38 ~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~l~~~a~~-~g~~~ia~aH~~dD 115 (333)
+.++.++.... .++...|+..++. .+++......+.. . ... + +..+.++++. -+...|++|++.||
T Consensus 102 i~vv~iDtg~~--fpet~~fv~~~~~~ygl~l~v~~~~~~-~-~~~-------l-~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 102 LPTVFIDQEET--FPTLENFVLETSERYCLSLYESQRQSG-A-SVN-------M-ADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp EEEEECCCTTC--CHHHHHHHHHHHHHTTEEEEECCC-------CC-------H-HHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred eeEEEEeCCCC--CHHHHHHHHHHHHHcCCCEEEEeCCcc-c-ccc-------H-HHHHHHHHhhCCCCcEEEEEEeccc
Confidence 33444443322 4789999999999 7777544332211 0 001 1 2334455665 36789999999999
Q ss_pred hHHHHHHHHHhcCccccc----cCCcccc-----ccCHHHHHHHHHHcCCCcee
Q psy16535 116 IAETVLMNVLRGDIARLQ----RCTDIIT-----YAYEKEIVMYAYYKKLVYFS 160 (333)
Q Consensus 116 ~~ET~l~nl~rg~~~~L~----~~~~iiR-----~i~k~EI~~y~~~~~l~~~~ 160 (333)
.. .|+. ..+. +...++| .++++||..|+..++|||.+
T Consensus 170 s~-------~r~l-~~~~~~d~~~p~~~ri~PL~dWt~~DVw~Yi~~~~lpy~p 215 (306)
T 2wsi_A 170 PF-------GEAL-KPIQRTDSNWPDFMRLQPLLHWDLTNIWSFLLYSNEPICG 215 (306)
T ss_dssp SS-------CCCC-CSEEECCTTSCSCEEECTTTTCCHHHHHHHHHHHCCCBCH
T ss_pred cc-------cccc-CceeccCCCCCCcEEEeChHHCCHHHHHHHHHHcCCCCCh
Confidence 53 1211 1121 1112333 89999999999999999943
No 46
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=84.39 E-value=2.7 Score=41.52 Aligned_cols=85 Identities=14% Similarity=0.022 Sum_probs=51.8
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhHHHHHHH
Q psy16535 17 NCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQALD 96 (333)
Q Consensus 17 ~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~l~ 96 (333)
.+..||-+++.+|.+++++.|+++|++||+... .|+. .|-+- +....|.+....+... +..+...+.+..+.
T Consensus 101 ~t~~aRp~i~~~l~e~A~e~Gad~IAtGht~kg-nDq~-rf~~~-~~al~p~l~viaPlr~-----~~ll~~~lsK~EI~ 172 (455)
T 1k92_A 101 TTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKG-NDIE-RFYRY-GLLTNAELQIYKPWLD-----TDFIDELGGRHEMS 172 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTS-SHHH-HHHHH-HHHHCTTCEEECGGGC-----HHHHHHSSSHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHcCCCEEEECCcCCC-CCHH-HHHHH-HHhcCCCCEEECeecc-----ccccccCCCHHHHH
Confidence 456789999999999999999999999997521 1554 23221 1111122222222221 00001114588899
Q ss_pred HHhHhccccEEEc
Q psy16535 97 RGAAMLGVDCVAT 109 (333)
Q Consensus 97 ~~a~~~g~~~ia~ 109 (333)
++|+++|+.+..+
T Consensus 173 ~yA~~~GIp~~~t 185 (455)
T 1k92_A 173 EFMIACGFDYKMS 185 (455)
T ss_dssp HHHHHTTCCCCCC
T ss_pred HHHHHcCCCcccC
Confidence 9999999987643
No 47
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=79.36 E-value=0.36 Score=42.19 Aligned_cols=73 Identities=8% Similarity=0.106 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhHHHHHHHH
Q psy16535 18 CTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQALDR 97 (333)
Q Consensus 18 ~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~l~~ 97 (333)
+..|..++...|.+++++.|++++++||+.|+ ... +..++.+....+. ...+|.. .+.++.+.+
T Consensus 128 ~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd---~~~-------r~~~~~~~~~~~~--~~i~PLl----~~t~~dI~~ 191 (215)
T 1sur_A 128 EKYNDINKVEPMNRALKELNAQTWFAGLRREQ---SGS-------RANLPVLAIQRGV--FKVLPII----DWDNRTIYQ 191 (215)
T ss_dssp HHHHHHHTHHHHHHHHHHTTEEEEECCCCTTS---SST-------TTTCCSEEEETTE--EEECTTT----TCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEeehhh---hhh-------hcCCCccccCCCE--EEEechH----hCCHHHHHH
Confidence 56777888889999999999989999999984 221 2222222110010 0112322 267899999
Q ss_pred HhHhccccE
Q psy16535 98 GAAMLGVDC 106 (333)
Q Consensus 98 ~a~~~g~~~ 106 (333)
+++++|+.+
T Consensus 192 y~~~~~lp~ 200 (215)
T 1sur_A 192 YLQKHGLKY 200 (215)
T ss_dssp HHHHHTCCC
T ss_pred HHHHhCCCC
Confidence 999999876
No 48
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=74.71 E-value=1.4 Score=39.89 Aligned_cols=70 Identities=17% Similarity=0.117 Sum_probs=45.3
Q ss_pred chHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhhhcCCCccchhhhhHHHH
Q psy16535 15 KNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIITIGRKNNCTFCGVFRRQ 93 (333)
Q Consensus 15 ~~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~ 93 (333)
...|..|+++|+.+|..++++.|+.+++++| .+|+++..... |... ..+ + | ++ .+.+.
T Consensus 105 ~~~~n~~~r~R~~~l~~~A~~~g~~vl~tgn-------~se~~~g~~t~~gd~~-----~~i-----~-P--L~-~l~K~ 163 (249)
T 3p52_A 105 VSLGNFAARIRMSLLYDYSALKNSLVIGTSN-------KSELLLGYGTIYGDLA-----CAF-----N-P--IG-SLYKS 163 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEEEBCCCC-------HHHHHHTCSCTTTTTC-----CSE-----E-T--TT-TSCHH
T ss_pred ccHhHHHHHHHHHHHHHHHHHCCCeEEeCCC-------HHHHHccchhhhcccc-----Ccc-----c-c--cc-CCcHH
Confidence 4689999999999999999999998777765 23333211111 1110 011 1 1 12 25578
Q ss_pred HHHHHhHhcccc
Q psy16535 94 ALDRGAAMLGVD 105 (333)
Q Consensus 94 ~l~~~a~~~g~~ 105 (333)
.+.++|+..|+.
T Consensus 164 eV~~la~~~gip 175 (249)
T 3p52_A 164 EIYALAKYLNLH 175 (249)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCc
Confidence 899999999865
No 49
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=66.75 E-value=4.8 Score=36.73 Aligned_cols=60 Identities=15% Similarity=-0.064 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcc--c-cccCCccccccCHHHHHHHHHHcCCC
Q psy16535 89 VFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIA--R-LQRCTDIITYAYEKEIVMYAYYKKLV 157 (333)
Q Consensus 89 ~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~--~-L~~~~~iiR~i~k~EI~~y~~~~~l~ 157 (333)
++|...+..+|.+.|+.++.|||..++ ..|-.. | +.+...++..++|.||.+.++..|+|
T Consensus 140 R~r~~~l~~~A~~~g~lvlgTgn~~E~---------~~Gy~t~~gd~~~~~~PL~~l~K~eVr~la~~lglp 202 (275)
T 1wxi_A 140 RERMKAQYSIAGMTSGVVVGTDHAAEA---------ITGFFTKYGDGGTDINPLYRLNKRQGKQLLAALACP 202 (275)
T ss_dssp HHHHHHHHHHHHHTTEEEBCCCCHHHH---------TTTCSCTTTTTCCSBCTTTTCCHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHCCCEEEECccHHHH---------ccCcccccCCCccceeeccCCCHHHHHHHHHHhCCc
Confidence 467788889999999988888876543 133211 1 11222344589999999999999998
No 50
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=66.18 E-value=4.1 Score=42.35 Aligned_cols=78 Identities=12% Similarity=0.043 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCCC----EEEeccCCCCCCcHHHHHHHHHHhhc--hhcc---cccchhhhcCCCccchhhhhHHHHHH
Q psy16535 25 RRQALDRGAAMLGVD----CVATGHNADDTDDIAETVLMNVLRGD--IARL---QRCTDIITIGRKNNCTFCGVFRRQAL 95 (333)
Q Consensus 25 r~~~L~~~~~~~g~~----~Ia~~H~ld~~~D~~Etfv~nl~rg~--i~~l---~~~~~v~~~~~~~~~~~cr~~Rr~~l 95 (333)
++.++..++++.|++ ++++||+.+ |..|++...+.+|. +..+ .+..........-..++ +.+.+..+
T Consensus 348 ~~~v~~~~A~~~g~~~~~~~LatG~~~~---D~iEs~~~~l~~g~~~iks~~nv~g~~~~~~~~~~~i~PL-~~L~K~EV 423 (697)
T 2vxo_A 348 FVKIANEVIGEMNLKPEEVFLAQGTLRP---DLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPL-KDFHKDEV 423 (697)
T ss_dssp HHHHHHHHHHHTCCCTTSEEEECCCSSC---CSBCCHHHHHHSCCCGGGSCCSSCHHHHHHHHTTCEECGG-GGSCHHHH
T ss_pred HHHHHHHHHHHcCCCcccEEEEEeccCh---hhhhhhhhhhhcCccccccccccchhhHHhccCCEEEEec-ccCCHHHH
Confidence 556667778999988 899999999 88899876666542 2111 11111001111111222 23668889
Q ss_pred HHHhHhccccE
Q psy16535 96 DRGAAMLGVDC 106 (333)
Q Consensus 96 ~~~a~~~g~~~ 106 (333)
.++|+++|+.+
T Consensus 424 r~la~~lGlP~ 434 (697)
T 2vxo_A 424 RILGRELGLPE 434 (697)
T ss_dssp HHHHHHTTCCH
T ss_pred HHHHHHcCCCc
Confidence 99999999864
No 51
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=65.89 E-value=5 Score=37.05 Aligned_cols=67 Identities=16% Similarity=-0.036 Sum_probs=43.8
Q ss_pred chhhhhHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHh-cCccccccCCccccccCHHHHHHHHHHcCCC
Q psy16535 84 CTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLR-GDIARLQRCTDIITYAYEKEIVMYAYYKKLV 157 (333)
Q Consensus 84 ~~~cr~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~r-g~~~~L~~~~~iiR~i~k~EI~~y~~~~~l~ 157 (333)
|-++.++|...+..+|.++|+-.+.|||-. |..+-.... |++.+ ...++-.++|.||.+.++..|+|
T Consensus 144 ~NiqaR~Rm~~L~~~A~~~g~lVlgTgn~s----E~~~Gy~T~~GD~~~---~~~Pl~~l~K~eV~~la~~lg~p 211 (285)
T 3dpi_A 144 GNIKARERMIAQYAVAGARNGVVIGTDHAA----ESVMGFFTKFGDGGA---DVLPLAGLTKRRVRALARMLGAD 211 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHTTEEEBCCCCHH----HHHHHHHHCCCCCCC---SBCTTTTCCHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHHHHHHCCCEEEeCccHH----hhhCCcccccCCCce---eEeeecCCcHHHHHHHHHHcCCC
Confidence 444557899999999999998655555443 333332222 32211 11223389999999999999987
No 52
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=64.40 E-value=5.6 Score=36.10 Aligned_cols=60 Identities=13% Similarity=-0.116 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcc--c-cccCCccccccCHHHHHHHHHHcCCC
Q psy16535 89 VFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIA--R-LQRCTDIITYAYEKEIVMYAYYKKLV 157 (333)
Q Consensus 89 ~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~--~-L~~~~~iiR~i~k~EI~~y~~~~~l~ 157 (333)
++|...+..+|.+.|+.++.|||..++ ..|-.. | +.+...++..++|.||.+.++..|+|
T Consensus 137 R~r~~~l~~~A~~~g~lvl~tgn~~E~---------~~Gy~t~~gd~~~~~~Pl~~l~K~eVr~la~~lglp 199 (271)
T 1kqp_A 137 RTRMIAQYAIGGQEGLLVLGTDHAAEA---------VTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAP 199 (271)
T ss_dssp HHHHHHHHHHHHHHTCEEBCCCCHHHH---------TTTCSCTTTTTCCSBCTTTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCEEEECccHHHh---------ccCCccccccccccccccccCCHHHHHHHHHHcCCC
Confidence 477888899999999888888775332 233221 1 11122344589999999999999997
No 53
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=62.89 E-value=4.1 Score=36.41 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=28.8
Q ss_pred hHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCC
Q psy16535 16 NNCTFCGVFRRQALDRGAAMLGVDCVATGHNAD 48 (333)
Q Consensus 16 ~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld 48 (333)
..|..|.++|+.+|..++.+.|+.+|+++|+.+
T Consensus 102 ~~~n~~ar~r~~~l~~~A~~~g~~vl~tg~~~e 134 (257)
T 2e18_A 102 GLGNIMSRTRMIMLYAHANSLGRIVLGTSNRSE 134 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEEECCCCHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCEEEEcCchhH
Confidence 468888899999999999999999999988543
No 54
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=62.59 E-value=3.2 Score=41.91 Aligned_cols=85 Identities=12% Similarity=0.089 Sum_probs=49.7
Q ss_pred HhhHHHHHHHHHHHHHHHhcCC----CEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhc-CCCccchhhhhHH
Q psy16535 17 NCTFCGVFRRQALDRGAAMLGV----DCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITI-GRKNNCTFCGVFR 91 (333)
Q Consensus 17 ~~~~~~~~r~~~L~~~~~~~g~----~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~-~~~~~~~~cr~~R 91 (333)
.+..|+..++..+.+.+++.|. ++++.||+.+ |..|++..+-....+..+.....+... ..+-..++ +.+.
T Consensus 336 kr~iig~~f~~vf~~~A~~~~~~~~~~~la~Gt~y~---D~ies~~~~g~~~~iks~~n~~gl~~~~~~~li~PL-~~l~ 411 (556)
T 3uow_A 336 KRKIIGKLFIEEFEKAVNNIDIDINKTFLLQGTLYP---DIIESKCSKNLSDTIKTHHNVGGLPKNLKFKLFEPF-KYLF 411 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCGGGEEEECCCCHH---HHHHHSCC-------------------CCCEEECTT-TTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccccCccCh---HHHhhcccccccceecccccccccccccccceEeec-ccCc
Confidence 4567788889999999999986 8999999999 888887532100111111110011100 00001112 2356
Q ss_pred HHHHHHHhHhcccc
Q psy16535 92 RQALDRGAAMLGVD 105 (333)
Q Consensus 92 r~~l~~~a~~~g~~ 105 (333)
...+.++++++|+.
T Consensus 412 K~EVr~la~~lGlp 425 (556)
T 3uow_A 412 KDDVKTLSRELNLP 425 (556)
T ss_dssp HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 88999999999986
No 55
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=61.69 E-value=2.4 Score=38.06 Aligned_cols=74 Identities=8% Similarity=0.089 Sum_probs=49.0
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhHHHHHHH
Q psy16535 17 NCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQALD 96 (333)
Q Consensus 17 ~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~l~ 96 (333)
.+..|...+...|.+.++++|+.++++||+.|+ ..+ |..++.+....+ ...-+|.. .+.++.+.
T Consensus 128 ~~~cc~~~K~~pl~~~l~~~~~~~~~tG~r~dd---s~~-------R~~l~~~~~~~~---~~~i~PL~---~wt~~dV~ 191 (252)
T 2o8v_A 128 IEKYNDINKVEPMNRALKELNAQTWFAGLRREQ---SGS-------RANLPVLAIQRG---VFKVLPII---DWDNRTIY 191 (252)
T ss_dssp HHHHHHHHTHHHHHHHHHHTTCSEEEECCCSTT---TTC-------CTTSCSEEESSS---SEEECGGG---SCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEeccccc---ccc-------cccCceeecCCC---eEEEechh---hCCHHHHH
Confidence 466788888889999999999999999999983 221 233333211100 00112221 26789999
Q ss_pred HHhHhccccE
Q psy16535 97 RGAAMLGVDC 106 (333)
Q Consensus 97 ~~a~~~g~~~ 106 (333)
+|++++|+.+
T Consensus 192 ~y~~~~~lp~ 201 (252)
T 2o8v_A 192 QYLQKHGLKY 201 (252)
T ss_dssp HHHHHTTCCC
T ss_pred HHHHHcCCCC
Confidence 9999999975
No 56
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=55.57 E-value=4.9 Score=36.11 Aligned_cols=31 Identities=16% Similarity=0.006 Sum_probs=26.0
Q ss_pred chHhhHH-----HHHHHHHHHHHHHhcCCCEEEecc
Q psy16535 15 KNNCTFC-----GVFRRQALDRGAAMLGVDCVATGH 45 (333)
Q Consensus 15 ~~~~~~~-----~~~r~~~L~~~~~~~g~~~Ia~~H 45 (333)
...|..| +++|+..|..++++.|+.++++||
T Consensus 109 ~~~~~~~~~Ni~~r~R~~~l~~~A~~~g~~vl~TGn 144 (249)
T 3fiu_A 109 NNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTDN 144 (249)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCC
T ss_pred CCcChhHHHHHHHHHHHHHHHHHHHHcCCEEEECCC
Confidence 4578888 999999999999999999999986
No 57
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=55.07 E-value=7 Score=35.17 Aligned_cols=70 Identities=16% Similarity=0.113 Sum_probs=44.2
Q ss_pred hHhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhHHHHHH
Q psy16535 16 NNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQAL 95 (333)
Q Consensus 16 ~~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~l 95 (333)
..|..|+++|+.+|..++++.|+.+|+++| .+|++ .|- ....+ + .....+|. + .+.+..+
T Consensus 105 ~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~-------~~E~~-----~Gy-~t~~g--d-~~~~i~PL---~-~l~K~ev 164 (268)
T 1xng_A 105 RKGNFCARLRMAFLYDYSLKSDSLVIGTSN-------KSERM-----LGY-GTLFG--D-LACAINPI---G-ELFKTEV 164 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEEBCCCC-------HHHHH-----HTC-SCTTT--T-TCCSEETT---T-TSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCc-------HHHHh-----cCc-ccccC--C-CCeeEEec---C-CCCHHHH
Confidence 478899999999999999999998877765 34554 211 00011 0 00011121 1 2457888
Q ss_pred HHHhHhcccc
Q psy16535 96 DRGAAMLGVD 105 (333)
Q Consensus 96 ~~~a~~~g~~ 105 (333)
.++++.+|+.
T Consensus 165 ~~la~~~gip 174 (268)
T 1xng_A 165 YELARRLNIP 174 (268)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCc
Confidence 9999998875
No 58
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=51.31 E-value=18 Score=33.10 Aligned_cols=65 Identities=14% Similarity=-0.028 Sum_probs=42.7
Q ss_pred chhhhhHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcc--c-cccCCccccccCHHHHHHHHHHcCCC
Q psy16535 84 CTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIA--R-LQRCTDIITYAYEKEIVMYAYYKKLV 157 (333)
Q Consensus 84 ~~~cr~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~--~-L~~~~~iiR~i~k~EI~~y~~~~~l~ 157 (333)
|-++.++|...+..+|.++|+-++.|||-.+ .+ .|-.. | ..+...++-.++|.|+.+.|+..|+|
T Consensus 144 ~NiqaR~R~~~Ly~~A~~~g~lVlgTgn~sE----~~-----~Gy~TkyGD~~~di~Pl~dl~Kt~Vr~LA~~lgiP 211 (279)
T 3q4g_A 144 GNVKARARMVAQYEIAGYVGGLVLGTDHSAE----NI-----TGFYTKFGDGACDLAPLFGLNKRQVRLLAKTLGAP 211 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHTEEEBCCCCHHH----HH-----HTCSCTTTTTCCSBCTTTTCCHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHHHHHHCCCEEecCccHHh----hh-----ccchhhcCCcccceeecCCCcHHHHHHHHHHhCCc
Confidence 3444568899999999999985555554433 22 23111 1 11112234599999999999999998
No 59
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=48.61 E-value=42 Score=34.11 Aligned_cols=113 Identities=9% Similarity=-0.130 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhHHHHHHHHHhHhcccc
Q psy16535 26 RQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQALDRGAAMLGVD 105 (333)
Q Consensus 26 ~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~l~~~a~~~g~~ 105 (333)
..--.++++.+|++...++ .+ +..+.|+..+..-. +......... ...+-...++|-..+..+|++.|..
T Consensus 386 ~~dA~~la~~LGi~~~~Id--I~---~~~~~~~~~~~~~~--g~~p~~~~~~---~~~~N~qaR~R~~~l~~~A~~~g~l 455 (634)
T 3ilv_A 386 YTSAKTLAESIGATFYNWS--VD---EEIEQYKATIENVI--ERPLTWEKDD---ITLQNIQARGRAPIIWMLTNVKQAL 455 (634)
T ss_dssp HHHHHHHHHHHTCEEEEEE--CH---HHHHHHHHHHHHHT--TSCCCTTTCH---HHHHHHHHHTTHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHhCCcEEEEc--cH---HHHHHHHHHHHHhh--CCCcccccCc---chhhhhhHHHHHHHHHHHHHhcCCE
Confidence 3344567777887655542 23 45555544443310 1110000000 0122333346778899999999998
Q ss_pred EEEcccCCcchHHHHHHHHHhcCcc--c-cccCCccccccCHHHHHHHHHHc----CCC
Q psy16535 106 CVATGHNADDIAETVLMNVLRGDIA--R-LQRCTDIITYAYEKEIVMYAYYK----KLV 157 (333)
Q Consensus 106 ~ia~aH~~dD~~ET~l~nl~rg~~~--~-L~~~~~iiR~i~k~EI~~y~~~~----~l~ 157 (333)
.+.||| ..|. ..|-.. + +.+...+++.++|.||.+.++.. |+|
T Consensus 456 vlgTgn----ksE~-----~~Gy~T~ygD~~~~~~Pl~~l~KteVr~la~~l~~~~glp 505 (634)
T 3ilv_A 456 LITTSN----RSEG-----DVGYATMDGDTAGGIAPIAGVDKDFIRSWLRWAEKNRNQH 505 (634)
T ss_dssp EBCCCC----HHHH-----HTTCSCTTTTTCSSBBTTTTSCHHHHHHHHHHHHHHSCCG
T ss_pred EeccCc----hhhH-----hhCCccccCCcccCCcccCCCcHHHHHHHHHHHHHcCCCc
Confidence 887775 2233 334221 1 22333456799999999999988 887
No 60
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=47.06 E-value=12 Score=34.85 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=28.7
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCC
Q psy16535 17 NCTFCGVFRRQALDRGAAMLGVDCVATGHNADD 49 (333)
Q Consensus 17 ~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~ 49 (333)
.+..|..++...|.+.++++|++++++||+.|+
T Consensus 126 ~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~De 158 (325)
T 1zun_A 126 SAKHTDIMKTEGLKQALDKHGFDAAFGGARRDE 158 (325)
T ss_dssp CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTS
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCEEEEecccch
Confidence 456777888899999999999999999999984
No 61
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=42.28 E-value=47 Score=32.26 Aligned_cols=81 Identities=15% Similarity=0.029 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhh-HHHHHHH
Q psy16535 18 CTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGV-FRRQALD 96 (333)
Q Consensus 18 ~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~-~Rr~~l~ 96 (333)
.+.||-+-...+.+++++.|++.|++||+... .|+. .|-..+ ...-|.+....|... +. +... +.+..+.
T Consensus 101 ~~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~kg-nDq~-rf~~~~-~al~p~~~IiaPl~d-----~~-~l~~~lsK~Eir 171 (421)
T 1vl2_A 101 TAIARPLIAKRQVEIAEKEGAQYVAHGATGKG-NDQV-RFELTY-AALNPNLKVISPWKD-----PE-FLAKFKGRTDLI 171 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEECCCCTTS-SHHH-HHHHHH-HHHCTTSEEECGGGC-----HH-HHHHTC--CHHH
T ss_pred CcccHHHHHHHHHHHHHHcCCCEEEECCeeCC-CChH-HHHHHH-HhcCCCCeEEcccCc-----hh-hccccCCHHHHH
Confidence 44577777788999999999999999999852 1332 222111 111111111111110 00 1111 4678899
Q ss_pred HHhHhccccEE
Q psy16535 97 RGAAMLGVDCV 107 (333)
Q Consensus 97 ~~a~~~g~~~i 107 (333)
++|+++|+..-
T Consensus 172 ~~A~e~Glp~~ 182 (421)
T 1vl2_A 172 NYAMEKGIPIK 182 (421)
T ss_dssp HHHHHHTCCCC
T ss_pred HHHHHcCCCcc
Confidence 99999999754
No 62
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=36.25 E-value=23 Score=32.69 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=17.5
Q ss_pred HHHHhcCCCEEEeccCCCC
Q psy16535 31 RGAAMLGVDCVATGHNADD 49 (333)
Q Consensus 31 ~~~~~~g~~~Ia~~H~ld~ 49 (333)
+++++.|++.|++||++++
T Consensus 249 ~~A~~~ga~~I~tG~~~~~ 267 (307)
T 1vbk_A 249 KLIRDFGVKGVIKGLRPND 267 (307)
T ss_dssp HHHHHHTCCEEECCCCGGG
T ss_pred HHHHHcCCCEEEECcccch
Confidence 8899999999999999874
No 63
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=32.46 E-value=35 Score=34.30 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcc--c-cccCCccccccCHHHHHHHHHHcC
Q psy16535 88 GVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIA--R-LQRCTDIITYAYEKEIVMYAYYKK 155 (333)
Q Consensus 88 r~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~--~-L~~~~~iiR~i~k~EI~~y~~~~~ 155 (333)
..+|...+..+|.+.|+..|.|| |.++. + .|-.. + ..+...++..++|.||.+.++..|
T Consensus 412 ar~r~~~l~~~A~~~g~~vl~TG-n~se~---~-----~Gy~t~~gd~~~~~~Pl~~l~K~eVr~la~~lg 473 (590)
T 3n05_A 412 SRLRGTTLMAISNQEGHIVLAPG-NKSEL---A-----VGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRN 473 (590)
T ss_dssp HHHHHHHHHHHHHHHTCEEBCCC-CHHHH---H-----HTCCCSSCTTSCSBCTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEeCC-CHHHH---h-----cCchhhcCCCccceeecCCCcHHHHHHHHHHhC
Confidence 34678889999999999999999 55542 2 23211 1 111222345899999999999887
No 64
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=32.28 E-value=32 Score=30.70 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=49.3
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCCEEEeccCCCCCCcHHHHHHHHHHhhchhcccccchhhhcCCCccchhhhhHHHHHHH
Q psy16535 17 NCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQALD 96 (333)
Q Consensus 17 ~~~~~~~~r~~~L~~~~~~~g~~~Ia~~H~ld~~~D~~Etfv~nl~rg~i~~l~~~~~v~~~~~~~~~~~cr~~Rr~~l~ 96 (333)
.+..|...+..-|.+.++++|++++++||+.| |.. .|.+++.+... +......-+|.. .+.+..+.
T Consensus 131 ~~~cc~~~K~~pl~~~l~~~g~~~~~tG~R~d---ds~-------~R~~~~~~~~~-~~~~~~ki~PL~---~wt~~dV~ 196 (261)
T 2oq2_A 131 DDKYDYLAKVEPAHRAYKELHISAVFTGRRKS---QGS-------ARSQLSIIEID-ELNGILKINPLI---NWTFEQVK 196 (261)
T ss_dssp HHHHHHHHTHHHHHHHHHHTTCSEEECCCCGG---GCG-------GGGGCCSEEEE-TTTTEEEECTTT---TCCHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHcCCCEEEEecccc---chH-------HHccCCceeec-CCCCeEEEechH---hCCHHHHH
Confidence 46667777778899999999999999999987 321 24444432211 001111112222 26789999
Q ss_pred HHhHhccccEE
Q psy16535 97 RGAAMLGVDCV 107 (333)
Q Consensus 97 ~~a~~~g~~~i 107 (333)
+|++++|+.+.
T Consensus 197 ~Yi~~~~lp~~ 207 (261)
T 2oq2_A 197 QYIDANNVPYN 207 (261)
T ss_dssp HHHHHHTCCCC
T ss_pred HHHHHcCCCCC
Confidence 99999998763
No 65
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=23.27 E-value=45 Score=26.15 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.4
Q ss_pred ccCHHHHHHHHHHcCCCceecCC
Q psy16535 141 YAYEKEIVMYAYYKKLVYFSTEC 163 (333)
Q Consensus 141 ~i~k~EI~~y~~~~~l~~~~D~~ 163 (333)
+-++++=+.||+.+|++|...+-
T Consensus 58 F~skE~AiayAek~G~~y~V~ep 80 (106)
T 2jya_A 58 FETQEQAEAYAQRKGIEYRVILP 80 (106)
T ss_dssp ESSHHHHHHHHHHHTCEEEECCC
T ss_pred cCCHHHHHHHHHHcCCEEEEeCC
Confidence 77999999999999999987653
Done!