RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16535
(333 letters)
>gnl|CDD|238951 cd01993, Alpha_ANH_like_II, This is a subfamily of Adenine
nucleotide alpha hydrolases superfamily.Adeninosine
nucleotide alpha hydrolases superfamily includes N type
ATP PPases and ATP sulphurylases. It forms a
apha/beta/apha fold which binds to Adenosine group.
This subfamily of proteins is predicted to bind ATP.
This domainhas a strongly conserved motif SGGKD at the
N terminus.
Length = 185
Score = 137 bits (347), Expect = 2e-39
Identities = 48/106 (45%), Positives = 59/106 (55%), Gaps = 13/106 (12%)
Query: 77 TIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCT 136
G K+ C+ CGV RR L++ A LG D +ATGHN DD AET+LMN+LRG I RL R
Sbjct: 80 KRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAETLLMNLLRGGILRLMRPG 139
Query: 137 DIIT-------------YAYEKEIVMYAYYKKLVYFSTECIFAPNA 169
I+ Y EKEIV+YA L + EC +A NA
Sbjct: 140 PILYLDEGDVTRIRPLVYVREKEIVLYAELNGLPFVEEECPYAGNA 185
Score = 99.6 bits (249), Expect = 3e-25
Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 11 EIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQ 70
+ G K+ C+ CGV RR L++ A LG D +ATGHN DD AET+LMN+LRG I RL
Sbjct: 80 KRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNL---DDEAETLLMNLLRGGILRLM 136
Query: 71 RCTDIITIGRK 81
R I+ +
Sbjct: 137 RPGPILYLDEG 147
Score = 39.2 bits (92), Expect = 0.001
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 263 ITGYRDDSLETVKQNKEDYQMDLKILSYDELYGWTMDAIVNQGIGPRSPAC 313
I GYRD+SLE V++ E+ ++L+I+S+ E Y T D V C
Sbjct: 41 IPGYRDESLEVVERLAEELGIELEIVSFKEEY--TDDIEVK--KRGGKSPC 87
>gnl|CDD|223115 COG0037, MesJ, tRNA(Ile)-lysidine synthase MesJ [Cell cycle
control, cell division, chromosome partitioning].
Length = 298
Score = 104 bits (262), Expect = 4e-26
Identities = 61/201 (30%), Positives = 79/201 (39%), Gaps = 20/201 (9%)
Query: 77 TIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARL---- 132
T+ K+ C C RR L + A LG D +ATGH+ DD AET LMN+LRG R
Sbjct: 94 TLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQAETFLMNLLRGSGLRGLRGM 153
Query: 133 -----QRCTDIIT----YAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKHLEK 183
+I Y EKEI +YA K L Y E + R R L LE+
Sbjct: 154 PPKRPFEGGLLIIRPLLYVREKEIELYAKEKGLPYIEDESNYDLRYTRNRIREELLPLEE 213
Query: 184 IRPASIMDII----HSGEQMAIKEGVKLPNREVCELCGF-LSSQKICKACSLLEGLNKGL 238
RP + E + E + C CG S KIC C L K
Sbjct: 214 ERPGLKFSLARAFELLRELRLLLEKLSDEKLLRCLACGAKPSLGKICAFCRKELALEKL- 272
Query: 239 PKLSLSKRSVQDRIRQENYSK 259
+ R ++ R + +K
Sbjct: 273 -PFASRVRLIRKRFEKGGLAK 292
>gnl|CDD|129370 TIGR00269, TIGR00269, TIGR00269 family protein. [Hypothetical
proteins, Conserved].
Length = 104
Score = 62.9 bits (153), Expect = 1e-12
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 141 YAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSGEQMA 200
Y EKE+V+YA+ +L EC ++ + R R FL LE +P ++ E++
Sbjct: 9 YIPEKEVVLYAFLNELKVHLDECPYSSLSVRARIRDFLYDLENKKPGVKFSVLRGFEKLI 68
Query: 201 I--KEGVKLPNREVCELCGFLSSQKICKACSLLEGL 234
KE + + CE CG +S +ICKAC LE L
Sbjct: 69 PLLKELSEQEDLRRCERCGEPTSGRICKACKFLEEL 104
>gnl|CDD|238950 cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the
PP-loop faimly implicated in cell cycle control [Cell
division and chromosome partitioning]. This is a
subfamily of Adenine nucleotide alpha hydrolases
superfamily.Adeninosine nucleotide alpha hydrolases
superfamily includes N type ATP PPases and ATP
sulphurylases. It forms a apha/beta/apha fold which
binds to Adenosine group. This domain has a strongly
conserved motif SGGXD at the N terminus.
Length = 185
Score = 53.7 bits (130), Expect = 1e-08
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 90 FRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRG 127
R A G D + T H+ADD AETVLM +LRG
Sbjct: 83 ARYDFFAEIAKEHGADVLLTAHHADDQAETVLMRLLRG 120
Score = 48.7 bits (117), Expect = 7e-07
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 24 FRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRG 64
R A G D + T H+ADD AETVLM +LRG
Sbjct: 83 ARYDFFAEIAKEHGADVLLTAHHADDQ---AETVLMRLLRG 120
>gnl|CDD|233864 TIGR02432, lysidine_TilS_N, tRNA(Ile)-lysidine synthetase,
N-terminal domain. The only examples in which the
wobble position of a tRNA must discriminate between G
and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop)
vs. UGG (Trp). In all bacteria, the wobble position of
the tRNA(Ile) recognizing AUA is lysidine, a lysine
derivative of cytidine. This family describes a protein
domain found, apparently, in all bacteria in a single
copy. Eukaryotic sequences appear to be organellar. The
domain archictecture of this protein family is variable;
some, including characterized proteins of E. coli and B.
subtilis known to be tRNA(Ile)-lysidine synthetase,
include a conserved 50-residue domain that many other
members lack. This protein belongs to the ATP-binding
PP-loop family ( pfam01171). It appears in the
literature and protein databases as TilS, YacA, and
putative cell cycle protein MesJ (a misnomer) [Protein
synthesis, tRNA and rRNA base modification].
Length = 189
Score = 50.3 bits (121), Expect = 2e-07
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 90 FRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRG 127
R + A G D + T H+ADD AET+L+ +LRG
Sbjct: 86 ARYDFFEEIAKKHGADYILTAHHADDQAETILLRLLRG 123
Score = 45.3 bits (108), Expect = 1e-05
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 24 FRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRG 64
R + A G D + T H+ADD AET+L+ +LRG
Sbjct: 86 ARYDFFEEIAKKHGADYILTAHHADDQ---AETILLRLLRG 123
>gnl|CDD|216343 pfam01171, ATP_bind_3, PP-loop family. This family of proteins
belongs to the PP-loop superfamily.
Length = 182
Score = 47.2 bits (113), Expect = 2e-06
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 90 FRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRG 127
R + A G + + T H+ADD AET LM +LRG
Sbjct: 83 ARYDFFEEIAKKNGAEVLLTAHHADDQAETFLMRLLRG 120
Score = 42.2 bits (100), Expect = 1e-04
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 24 FRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRG 64
R + A G + + T H+ADD AET LM +LRG
Sbjct: 83 ARYDFFEEIAKKNGAEVLLTAHHADDQ---AETFLMRLLRG 120
>gnl|CDD|236737 PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA;
Provisional.
Length = 258
Score = 43.3 bits (103), Expect = 7e-05
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 81 KNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQ------- 133
K C+ C RR L R A LG +A GH+ DDI ET+ +N+ G +L+
Sbjct: 109 KTTCSLCSRLRRGILYRTARELGATKIALGHHRDDILETLFLNMFYG--GKLKAMPPKLL 166
Query: 134 ----RCTDI--ITYAYEKEIVMYAYYK 154
+ I + Y EK+I+ +A K
Sbjct: 167 SDDGKHIVIRPLAYVAEKDIIKFAEAK 193
Score = 37.5 bits (88), Expect = 0.006
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 15 KNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRG 64
K C+ C RR L R A LG +A GH+ DDI ET+ +N+ G
Sbjct: 109 KTTCSLCSRLRRGILYRTARELGATKIALGHHR---DDILETLFLNMFYG 155
>gnl|CDD|238942 cd01984, AANH_like, Adenine nucleotide alpha hydrolases superfamily
including N type ATP PPases, ATP sulphurylases
Universal Stress Response protein and electron transfer
flavoprotein (ETF). The domain forms a apha/beta/apha
fold which binds to Adenosine nucleotide.
Length = 86
Score = 39.0 bits (91), Expect = 3e-04
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 89 VFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT 140
V + L R AA G D + GHNADD+A L + ++T
Sbjct: 34 VAFVRILKRLAAEEGADVIILGHNADDVAGRRLGASANVLVVIKGAGIPVLT 85
Score = 33.9 bits (78), Expect = 0.014
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 23 VFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITI 78
V + L R AA G D + GHNA DD+A L + ++T
Sbjct: 34 VAFVRILKRLAAEEGADVIILGHNA---DDVAGRRLGASANVLVVIKGAGIPVLTP 86
>gnl|CDD|238948 cd01990, Alpha_ANH_like_I, This is a subfamily of Adenine
nucleotide alpha hydrolases superfamily. Adenine
nucleotide alpha hydrolases superfamily includes N type
ATP PPases and ATP sulphurylases. It forms a
apha/beta/apha fold which binds to Adenosine group.
This subfamily of proteins probably binds ATP. This
domain is about 200 amino acids long with a strongly
conserved motif SGGKD at the N terminus.
Length = 202
Score = 33.4 bits (77), Expect = 0.085
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 16 NNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDD 52
+ C C +AL A LG+D V G NADD D
Sbjct: 74 DRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGD 110
Score = 33.4 bits (77), Expect = 0.096
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 82 NNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAE 118
+ C C +AL A LG+D V G NADD+ +
Sbjct: 74 DRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGD 110
>gnl|CDD|238944 cd01986, Alpha_ANH_like, Adenine nucleotide alpha hydrolases
superfamily including N type ATP PPases and ATP
sulphurylases. The domain forms a apha/beta/apha fold
which binds to Adenosine group..
Length = 103
Score = 31.3 bits (71), Expect = 0.18
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 91 RRQALDRGAAMLGVDCVATGHNADDIAETVLMNV 124
R +A R A G + +ATG DD+A L
Sbjct: 49 REEAAKRIAKEKGAETIATGTRRDDVANRALGLT 82
Score = 26.7 bits (59), Expect = 6.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 25 RRQALDRGAAMLGVDCVATGHNADD 49
R +A R A G + +ATG DD
Sbjct: 49 REEAAKRIAKEKGAETIATGTRRDD 73
>gnl|CDD|224522 COG1606, COG1606, ATP-utilizing enzymes of the PP-loop superfamily
[General function prediction only].
Length = 269
Score = 31.2 bits (71), Expect = 0.66
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 82 NNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAE 118
N C C L A G D VA G NA D+ +
Sbjct: 92 NRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFD 128
Score = 30.0 bits (68), Expect = 1.5
Identities = 13/34 (38%), Positives = 13/34 (38%)
Query: 16 NNCTFCGVFRRQALDRGAAMLGVDCVATGHNADD 49
N C C L A G D VA G NA D
Sbjct: 92 NRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASD 125
>gnl|CDD|184640 PRK14351, ligA, NAD-dependent DNA ligase LigA; Provisional.
Length = 689
Score = 31.3 bits (71), Expect = 0.74
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 108 ATGHNADDIAETVLMNVLRGDIARLQRCTDIITYAYE 144
A+ HN +I E + V GD R++R D+I Y E
Sbjct: 377 ASLHNPAEIEE---LGVNVGDRVRVKRAGDVIPYVEE 410
>gnl|CDD|223430 COG0353, RecR, Recombinational DNA repair protein (RecF pathway)
[DNA replication, recombination, and repair].
Length = 198
Score = 29.1 bits (66), Expect = 2.3
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 180 HLEKIRPASIMDIIHSGEQMAIKEGVKLPNREVCELCGFLSSQKICKACS 229
HL + + + A+ E + N + C +CG L+ C CS
Sbjct: 31 HLLQRDREDVERLAK-----ALLEAKE--NIKHCSVCGNLTESDPCDICS 73
>gnl|CDD|215195 PLN02341, PLN02341, pfkB-type carbohydrate kinase family protein.
Length = 470
Score = 29.4 bits (66), Expect = 3.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 99 AAMLGVDCVATGHNADDIAETVLMNVLR 126
AA LG+ C GH D+I L++VL
Sbjct: 129 AARLGLRCSTIGHVGDEIYGKFLLDVLA 156
>gnl|CDD|237426 PRK13558, PRK13558, bacterio-opsin activator; Provisional.
Length = 665
Score = 29.4 bits (66), Expect = 3.4
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 26 RQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARL 69
A DR A +DCV H D D +A L+ +R A
Sbjct: 41 VAARDRVEAG-EIDCVVADHEPDGFDGLA---LLEAVRQTTAVP 80
>gnl|CDD|234426 TIGR03975, rSAM_ocin_1, bacteriocin maturation radical SAM protein
1. Models TIGR03793 and TIGR03798 describe bacteriocin
precursor families to occur often in large paralogous
families and are subject to various modifications,
including by LanM family lantibiotic synthases and by
cyclodehydratases. This model represents a radical SAM
protein family that regularly occurs in the context of
these bacteriocins, and may occur where other familiar
peptide modification enzymes are absent [Cellular
processes, Toxin production and resistance].
Length = 606
Score = 28.8 bits (65), Expect = 5.0
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 6/25 (24%)
Query: 13 GRKNNCTFCGV------FRRQALDR 31
G+K++CTFCG+ FR ++ DR
Sbjct: 273 GQKHHCTFCGLNGGGMQFRSKSPDR 297
Score = 28.8 bits (65), Expect = 5.0
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 6/25 (24%)
Query: 79 GRKNNCTFCGV------FRRQALDR 97
G+K++CTFCG+ FR ++ DR
Sbjct: 273 GQKHHCTFCGLNGGGMQFRSKSPDR 297
>gnl|CDD|236137 PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.
Length = 665
Score = 28.6 bits (65), Expect = 6.2
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 108 ATGHNADDIAETVLMNVLRGDIARLQRCTDII 139
AT HNAD+I ++ GD ++R D+I
Sbjct: 355 ATLHNADEIER---KDIRIGDTVVVRRAGDVI 383
>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein
Serine/Threonine Kinase, Yank1. Serine/Threonine
Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Yank1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily
contains uncharacterized STKs with similarity to the
human protein designated Yank1 or STK32A.
Length = 258
Score = 27.7 bits (62), Expect = 7.5
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 14/63 (22%)
Query: 146 EIVMYAYYKKLV-YFST-----ECIFAPNAYRGHART--------FLKHLEKIRPASIMD 191
E++ Y V ++S EC+ YRGH+RT +
Sbjct: 169 EVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQETADVLYPATWSTE 228
Query: 192 IIH 194
I
Sbjct: 229 AID 231
>gnl|CDD|204544 pfam10712, NAD-GH, NAD-specific glutamate dehydrogenase. The
members of this are annotated as being NAD-specific
glutamate dehydrogenase encoded in antisense gene pair
with DnaK-J. However, this could not be confirmed.
Length = 574
Score = 28.0 bits (63), Expect = 7.8
Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 17/75 (22%)
Query: 43 TGHNADDTDDIAETVLMN--VLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQALDRGAA 100
G AD DD+ + L VL +ARL D + QA GA
Sbjct: 235 AGLAADQ-DDVVDVALGQAGVLERLLARLDGALDQVL--------------DQAFQLGAG 279
Query: 101 MLGVDCVATGHNADD 115
L V+ + T D
Sbjct: 280 QLHVEVLRTRVVGGD 294
>gnl|CDD|225320 COG2522, COG2522, Predicted transcriptional regulator [General
function prediction only].
Length = 119
Score = 26.6 bits (59), Expect = 8.6
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 170 YRGHARTFLKHLEKIRPASIMDIIHSGEQMAIKEGVKLPNREVCELCGFLSSQKICKACS 229
RG AR E I ++ + ++ + E L + CKA
Sbjct: 46 KRGSAR-LEDIGETDE--EIRSLVAELIKNLVEGFEIVKTIE-RIFLLSLGKEYFCKAYE 101
Query: 230 LLEGL 234
L G+
Sbjct: 102 RLSGI 106
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.411
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,667,636
Number of extensions: 1584231
Number of successful extensions: 1366
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1356
Number of HSP's successfully gapped: 41
Length of query: 333
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 236
Effective length of database: 6,635,264
Effective search space: 1565922304
Effective search space used: 1565922304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)