RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16535
         (333 letters)



>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI,
           C-terminal domain {Bacillus anthracis [TaxId: 1392]}
          Length = 218

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 9/132 (6%)

Query: 81  KNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT 140
             + T       +  +R A       + TG +   +A   L ++   +          + 
Sbjct: 85  SYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMHTINEVTNYPVIRPLI 144

Query: 141 YAYEKEIVMYAYYKKLVYFST----ECIFAPNAYRGHARTFLKHLEKI-----RPASIMD 191
              + EI+  A        S     +C           +   +   +          I +
Sbjct: 145 TMDKLEIIKIAEEIGTYDISIRPYEDCCTVFTPASPATKPKREKANRFEAKYDFTPLIDE 204

Query: 192 IIHSGEQMAIKE 203
            + + E M ++ 
Sbjct: 205 AVANKETMVLQT 216


>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 216

 Score = 35.3 bits (80), Expect = 0.005
 Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 10/125 (8%)

Query: 70  QRCTDIITIGRKNNCTFCGVFRR-QALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGD 128
           +          + +    G F R + L       G DC+AT H+ +D+ ET L+   RG 
Sbjct: 91  KEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSLLFFTRGT 150

Query: 129 IAR--------LQRCTDIITYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHAR-TFLK 179
                       +     + Y    EI  YA +K L +   E  +  +  R   R   + 
Sbjct: 151 GLDGLIGFLPKEEVIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYEVSIPRNRIRHRVIP 210

Query: 180 HLEKI 184
            L++I
Sbjct: 211 ELKRI 215


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0448    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,234,122
Number of extensions: 56950
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 5
Length of query: 333
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 247
Effective length of database: 1,226,816
Effective search space: 303023552
Effective search space used: 303023552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.9 bits)