Query psy1654
Match_columns 459
No_of_seqs 155 out of 1345
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 23:50:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00150 phosphoglucomutase-2- 100.0 3.4E-81 7.3E-86 667.2 46.1 432 4-446 18-454 (584)
2 cd05799 PGM2 This CD includes 100.0 5.1E-77 1.1E-81 625.9 44.1 415 32-455 1-426 (487)
3 KOG1220|consensus 100.0 5.3E-76 1.2E-80 590.5 36.4 423 21-449 48-474 (607)
4 cd03089 PMM_PGM The phosphoman 100.0 1.2E-75 2.5E-80 608.7 37.3 373 34-455 1-375 (443)
5 cd05800 PGM_like2 This PGM-lik 100.0 2.9E-75 6.3E-80 608.9 39.2 384 33-455 1-387 (461)
6 cd05803 PGM_like4 This PGM-lik 100.0 3.3E-75 7.1E-80 605.4 36.7 379 34-455 1-382 (445)
7 PRK14321 glmM phosphoglucosami 100.0 1.4E-74 3.1E-79 600.5 34.8 370 33-456 3-373 (449)
8 cd05805 MPG1_transferase GTP-m 100.0 1.4E-74 3E-79 600.4 33.4 373 34-456 1-376 (441)
9 PRK14315 glmM phosphoglucosami 100.0 3.9E-74 8.6E-79 597.4 36.8 378 31-453 2-383 (448)
10 PRK14317 glmM phosphoglucosami 100.0 7.7E-74 1.7E-78 597.5 38.9 386 28-455 12-405 (465)
11 PRK10887 glmM phosphoglucosami 100.0 7E-74 1.5E-78 594.8 37.1 375 32-452 1-376 (443)
12 cd03087 PGM_like1 This archaea 100.0 7.8E-74 1.7E-78 594.6 35.0 369 34-454 1-370 (439)
13 PRK15414 phosphomannomutase Cp 100.0 2.4E-73 5.3E-78 592.0 38.3 378 32-454 4-388 (456)
14 PRK14324 glmM phosphoglucosami 100.0 2E-73 4.3E-78 591.1 37.1 373 33-451 2-380 (446)
15 PRK09542 manB phosphomannomuta 100.0 3.1E-73 6.8E-78 589.9 36.4 374 35-456 1-374 (445)
16 cd05802 GlmM GlmM is a bacteri 100.0 6E-73 1.3E-77 586.9 37.8 372 34-450 1-373 (434)
17 COG1109 {ManB} Phosphomannomut 100.0 8.8E-73 1.9E-77 588.6 37.7 381 29-453 4-387 (464)
18 cd03085 PGM1 Phosphoglucomutas 100.0 1.4E-72 3.1E-77 594.6 38.3 395 31-456 9-427 (548)
19 PLN02371 phosphoglucosamine mu 100.0 1.7E-72 3.7E-77 599.2 38.8 394 33-452 66-484 (583)
20 PRK14323 glmM phosphoglucosami 100.0 1.6E-72 3.5E-77 584.4 36.3 370 31-451 2-372 (440)
21 TIGR01455 glmM phosphoglucosam 100.0 2E-72 4.4E-77 584.1 36.1 378 35-455 1-379 (443)
22 PRK14314 glmM phosphoglucosami 100.0 4.1E-72 8.8E-77 582.6 38.2 380 32-456 3-385 (450)
23 PRK14318 glmM phosphoglucosami 100.0 3.3E-72 7.1E-77 583.1 37.5 378 33-455 3-382 (448)
24 TIGR01132 pgm phosphoglucomuta 100.0 1E-71 2.2E-76 590.3 38.6 392 31-455 37-455 (543)
25 PRK07564 phosphoglucomutase; V 100.0 5.1E-72 1.1E-76 592.6 36.2 408 15-455 21-454 (543)
26 PRK14316 glmM phosphoglucosami 100.0 1.1E-71 2.3E-76 579.8 37.3 366 33-440 2-368 (448)
27 PRK14322 glmM phosphoglucosami 100.0 7.9E-72 1.7E-76 577.2 34.1 368 32-454 3-371 (429)
28 cd05801 PGM_like3 This bacteri 100.0 4.2E-71 9E-76 583.5 36.8 388 31-455 19-439 (522)
29 PRK14320 glmM phosphoglucosami 100.0 1.1E-70 2.3E-75 570.9 35.7 374 33-455 3-377 (443)
30 PLN02307 phosphoglucomutase 100.0 1.3E-69 2.8E-74 572.8 38.5 392 31-448 21-448 (579)
31 PRK14319 glmM phosphoglucosami 100.0 2.4E-69 5.1E-74 558.9 33.9 362 33-450 2-364 (430)
32 cd03088 ManB ManB is a bacteri 100.0 4.5E-68 9.7E-73 553.3 37.5 372 34-455 1-383 (459)
33 cd03084 phosphohexomutase The 100.0 6.4E-59 1.4E-63 470.4 28.9 311 34-443 1-312 (355)
34 cd03086 PGM3 PGM3 (phosphogluc 100.0 2.3E-44 4.9E-49 376.3 30.1 297 75-450 101-441 (513)
35 COG0033 Pgm Phosphoglucomutase 100.0 1.1E-44 2.4E-49 353.1 25.0 393 30-452 13-428 (524)
36 KOG0625|consensus 100.0 1.4E-43 3.1E-48 341.6 26.9 388 32-455 15-427 (558)
37 PLN02895 phosphoacetylglucosam 100.0 8.8E-38 1.9E-42 325.6 28.8 286 76-437 127-467 (562)
38 PTZ00302 N-acetylglucosamine-p 100.0 2.5E-37 5.3E-42 324.6 31.6 293 76-437 152-493 (585)
39 PF02878 PGM_PMM_I: Phosphoglu 100.0 1.3E-33 2.7E-38 247.2 13.4 132 32-170 1-132 (137)
40 PF02880 PGM_PMM_III: Phosphog 99.9 5.4E-24 1.2E-28 179.8 8.1 113 314-442 1-113 (113)
41 PF02879 PGM_PMM_II: Phosphogl 99.8 7.6E-21 1.6E-25 158.3 9.5 104 199-308 1-104 (104)
42 KOG2537|consensus 99.6 7.9E-15 1.7E-19 146.8 19.2 262 59-397 106-381 (539)
43 PLN02895 phosphoacetylglucosam 98.4 1.9E-06 4.1E-11 91.2 12.9 57 93-158 31-87 (562)
44 PTZ00302 N-acetylglucosamine-p 98.3 1.1E-06 2.4E-11 93.6 6.3 39 129-167 75-113 (585)
45 cd03086 PGM3 PGM3 (phosphogluc 98.0 5.9E-06 1.3E-10 87.4 5.4 29 130-158 36-64 (513)
46 KOG2537|consensus 96.5 0.0068 1.5E-07 62.1 7.5 87 128-239 58-144 (539)
47 PF02502 LacAB_rpiB: Ribose/Ga 87.0 3 6.5E-05 36.4 7.5 57 78-138 1-66 (140)
48 PRK12613 galactose-6-phosphate 86.3 3.7 8.1E-05 35.8 7.6 57 78-138 2-64 (141)
49 TIGR01118 lacA galactose-6-pho 85.7 4.3 9.3E-05 35.4 7.7 56 78-137 2-64 (141)
50 PRK08621 galactose-6-phosphate 85.6 5.1 0.00011 35.0 8.1 43 78-124 2-47 (142)
51 TIGR01120 rpiB ribose 5-phosph 84.4 4.8 0.0001 35.2 7.4 33 78-114 1-33 (143)
52 PRK05571 ribose-5-phosphate is 83.6 5.8 0.00013 34.9 7.7 33 78-114 2-34 (148)
53 TIGR01119 lacB galactose-6-pho 82.5 6.5 0.00014 35.4 7.7 33 78-114 2-34 (171)
54 PTZ00215 ribose 5-phosphate is 82.3 6.8 0.00015 34.6 7.6 34 77-114 3-38 (151)
55 TIGR00689 rpiB_lacA_lacB sugar 81.4 6.9 0.00015 34.3 7.3 32 79-114 1-32 (144)
56 PRK08622 galactose-6-phosphate 81.3 7.7 0.00017 35.0 7.7 33 78-114 2-34 (171)
57 TIGR02133 RPI_actino ribose 5- 80.5 8.8 0.00019 33.8 7.7 57 78-138 2-68 (148)
58 PRK12615 galactose-6-phosphate 79.9 8.8 0.00019 34.6 7.6 33 78-114 2-34 (171)
59 COG0426 FpaA Uncharacterized f 71.2 21 0.00045 36.6 8.4 75 56-137 230-305 (388)
60 COG0698 RpiB Ribose 5-phosphat 68.6 24 0.00052 31.1 7.2 31 78-111 2-32 (151)
61 COG1867 TRM1 N2,N2-dimethylgua 60.5 25 0.00054 35.6 6.5 163 34-244 59-239 (380)
62 PRK02261 methylaspartate mutas 53.4 1E+02 0.0022 26.6 8.5 56 76-137 3-62 (137)
63 PLN02739 serine acetyltransfer 51.3 15 0.00031 37.1 3.2 32 50-87 323-354 (355)
64 PTZ00090 40S ribosomal protein 46.6 1.1E+02 0.0024 28.6 7.9 61 49-118 158-218 (233)
65 PRK08621 galactose-6-phosphate 44.5 92 0.002 27.2 6.8 70 221-303 2-73 (142)
66 COG2185 Sbm Methylmalonyl-CoA 42.2 54 0.0012 28.6 5.0 44 76-124 12-60 (143)
67 PF03646 FlaG: FlaG protein; 40.9 61 0.0013 26.5 5.0 54 271-325 40-96 (107)
68 PRK04523 N-acetylornithine car 40.7 79 0.0017 31.8 6.7 43 68-111 160-205 (335)
69 PRK13398 3-deoxy-7-phosphohept 40.6 74 0.0016 30.9 6.3 62 219-283 196-261 (266)
70 TIGR01118 lacA galactose-6-pho 40.3 1.3E+02 0.0027 26.3 7.0 70 221-303 2-73 (141)
71 PF03602 Cons_hypoth95: Conser 40.3 63 0.0014 29.4 5.5 51 82-135 18-71 (183)
72 PRK11921 metallo-beta-lactamas 39.7 1.7E+02 0.0037 30.0 9.2 51 56-111 231-284 (394)
73 cd02072 Glm_B12_BD B12 binding 39.7 90 0.0019 26.7 5.9 45 81-130 7-52 (128)
74 COG0505 CarA Carbamoylphosphat 39.7 46 0.00099 33.6 4.6 57 221-281 182-247 (368)
75 PRK08622 galactose-6-phosphate 38.5 1.1E+02 0.0025 27.5 6.6 64 221-296 2-68 (171)
76 TIGR02370 pyl_corrinoid methyl 37.9 3.2E+02 0.0069 25.0 11.1 61 76-138 84-144 (197)
77 TIGR02133 RPI_actino ribose 5- 37.3 1.3E+02 0.0028 26.5 6.7 74 221-304 2-77 (148)
78 PRK08673 3-deoxy-7-phosphohept 36.9 58 0.0013 32.8 5.0 63 218-283 261-327 (335)
79 TIGR01501 MthylAspMutase methy 36.8 1E+02 0.0022 26.6 5.9 51 81-137 9-60 (134)
80 cd02069 methionine_synthase_B1 36.8 2E+02 0.0044 26.8 8.4 59 76-137 88-147 (213)
81 TIGR01120 rpiB ribose 5-phosph 36.0 1.5E+02 0.0034 25.8 6.9 64 221-296 1-67 (143)
82 PRK05571 ribose-5-phosphate is 35.9 1.6E+02 0.0034 25.9 7.0 65 221-297 2-70 (148)
83 PRK08868 flagellar protein Fla 35.9 1.3E+02 0.0027 26.4 6.2 54 271-325 74-130 (144)
84 PF02502 LacAB_rpiB: Ribose/Ga 35.8 88 0.0019 27.2 5.3 62 221-294 1-65 (140)
85 PRK12615 galactose-6-phosphate 35.0 1.5E+02 0.0032 26.8 6.8 65 221-297 2-69 (171)
86 TIGR00640 acid_CoA_mut_C methy 34.8 1.1E+02 0.0025 26.1 5.9 51 81-137 10-61 (132)
87 PRK12613 galactose-6-phosphate 34.2 1.7E+02 0.0036 25.6 6.8 69 221-303 2-72 (141)
88 PTZ00215 ribose 5-phosphate is 33.8 1.6E+02 0.0035 25.9 6.7 65 220-296 3-72 (151)
89 cd02071 MM_CoA_mut_B12_BD meth 33.0 2.7E+02 0.0058 23.2 7.9 50 83-137 9-58 (122)
90 PRK14719 bifunctional RNAse/5- 32.4 41 0.00089 34.2 3.2 31 77-108 68-98 (360)
91 cd03364 TOPRIM_DnaG_primases T 32.3 1E+02 0.0022 23.5 4.8 34 77-111 44-77 (79)
92 PF07676 PD40: WD40-like Beta 31.6 37 0.00079 21.9 1.8 22 283-304 7-28 (39)
93 PRK05452 anaerobic nitric oxid 31.1 3.1E+02 0.0068 29.0 9.7 49 58-111 237-288 (479)
94 PRK05309 30S ribosomal protein 30.6 3E+02 0.0066 23.5 7.7 79 30-118 38-116 (128)
95 PRK08452 flagellar protein Fla 29.6 2E+02 0.0043 24.5 6.3 53 272-325 57-112 (124)
96 PRK07738 flagellar protein Fla 29.2 2E+02 0.0044 24.2 6.2 54 271-325 49-105 (117)
97 PRK13396 3-deoxy-7-phosphohept 28.9 89 0.0019 31.7 4.8 64 218-284 270-337 (352)
98 TIGR01119 lacB galactose-6-pho 28.6 2.2E+02 0.0048 25.7 6.8 65 221-297 2-69 (171)
99 PF11576 DUF3236: Protein of u 28.6 1.6E+02 0.0034 25.7 5.5 82 221-315 37-123 (154)
100 TIGR03632 bact_S11 30S ribosom 27.9 3.4E+02 0.0075 22.3 7.6 76 33-118 24-99 (108)
101 PF13167 GTP-bdg_N: GTP-bindin 27.7 2E+02 0.0043 23.3 5.7 45 235-288 13-60 (95)
102 COG2085 Predicted dinucleotide 27.5 4.4E+02 0.0095 24.7 8.7 78 58-144 11-98 (211)
103 PRK09271 flavodoxin; Provision 27.0 1.4E+02 0.0031 26.2 5.4 32 78-110 2-34 (160)
104 PF13662 Toprim_4: Toprim doma 26.8 54 0.0012 25.2 2.3 34 77-111 47-80 (81)
105 PF00861 Ribosomal_L18p: Ribos 26.7 1.5E+02 0.0033 24.8 5.2 50 52-108 69-119 (119)
106 PLN02204 diacylglycerol kinase 26.7 3.4E+02 0.0073 29.7 8.9 86 195-297 138-230 (601)
107 TIGR02883 spore_cwlD N-acetylm 26.1 2.8E+02 0.0061 25.1 7.4 59 234-296 34-94 (189)
108 COG1004 Ugd Predicted UDP-gluc 25.7 78 0.0017 32.5 3.7 66 50-126 146-211 (414)
109 PHA02031 putative DnaG-like pr 25.5 1.9E+02 0.0041 28.1 6.1 34 77-111 207-240 (266)
110 PRK07200 aspartate/ornithine c 25.3 2.1E+02 0.0046 29.5 6.9 35 74-111 185-224 (395)
111 PRK12457 2-dehydro-3-deoxyphos 25.0 2.7E+02 0.0059 27.2 7.1 59 219-280 191-264 (281)
112 PRK09607 rps11p 30S ribosomal 24.9 3.6E+02 0.0079 23.2 7.1 80 34-118 35-117 (132)
113 TIGR01362 KDO8P_synth 3-deoxy- 24.7 2.4E+02 0.0052 27.2 6.6 61 218-281 174-249 (258)
114 cd02067 B12-binding B12 bindin 24.5 3.9E+02 0.0085 21.8 8.0 51 82-137 8-58 (119)
115 CHL00041 rps11 ribosomal prote 24.4 4.2E+02 0.0092 22.1 7.6 76 33-118 37-112 (116)
116 TIGR00689 rpiB_lacA_lacB sugar 24.4 1.9E+02 0.0042 25.2 5.5 52 233-296 14-66 (144)
117 PLN02958 diacylglycerol kinase 24.3 3.8E+02 0.0081 28.5 8.8 84 195-297 91-180 (481)
118 TIGR01361 DAHP_synth_Bsub phos 23.7 2.1E+02 0.0046 27.6 6.3 60 219-281 194-257 (260)
119 COG2949 SanA Uncharacterized m 23.4 4.3E+02 0.0094 24.7 7.7 99 33-141 61-163 (235)
120 PRK05198 2-dehydro-3-deoxyphos 23.4 2.9E+02 0.0063 26.8 6.9 63 217-282 181-258 (264)
121 PRK10834 vancomycin high tempe 23.2 3.3E+02 0.0071 26.0 7.3 87 50-141 61-151 (239)
122 smart00135 LY Low-density lipo 22.8 80 0.0017 20.1 2.3 17 288-304 12-28 (43)
123 KOG1322|consensus 22.7 5.7E+02 0.012 25.8 8.9 108 37-155 52-166 (371)
124 cd02070 corrinoid_protein_B12- 22.5 6E+02 0.013 23.2 10.6 56 76-137 82-141 (201)
125 COG0100 RpsK Ribosomal protein 22.5 3.3E+02 0.0072 23.4 6.3 61 50-118 57-117 (129)
126 COG0698 RpiB Ribose 5-phosphat 22.4 3.4E+02 0.0073 24.0 6.6 66 221-298 2-71 (151)
127 cd06533 Glyco_transf_WecG_TagA 22.3 1.7E+02 0.0038 26.1 5.1 57 84-143 26-83 (171)
128 PF03808 Glyco_tran_WecB: Glyc 21.9 3.3E+02 0.0071 24.3 6.8 56 85-143 29-85 (172)
129 COG1105 FruK Fructose-1-phosph 21.7 7.6E+02 0.016 24.6 9.7 28 196-229 142-169 (310)
130 COG0860 AmiC N-acetylmuramoyl- 21.6 3.4E+02 0.0073 25.7 7.1 65 217-297 40-123 (231)
131 TIGR00670 asp_carb_tr aspartat 21.5 1.8E+02 0.004 28.7 5.4 40 69-111 143-182 (301)
132 PLN03033 2-dehydro-3-deoxyphos 21.5 3E+02 0.0064 27.0 6.6 59 217-278 187-265 (290)
133 COG0683 LivK ABC-type branched 21.1 3.3E+02 0.0072 27.3 7.5 49 58-110 133-181 (366)
134 PRK00979 tetrahydromethanopter 21.0 8.1E+02 0.018 24.4 9.7 75 195-294 81-157 (308)
135 TIGR00646 MG010 DNA primase-re 20.9 2.8E+02 0.006 26.1 6.2 34 77-111 155-188 (218)
136 PRK02102 ornithine carbamoyltr 20.9 2.6E+02 0.0056 28.1 6.4 39 69-111 148-186 (331)
137 PRK03692 putative UDP-N-acetyl 20.8 1.3E+02 0.0029 28.7 4.2 55 85-142 86-140 (243)
138 PRK10909 rsmD 16S rRNA m(2)G96 20.6 3.7E+02 0.008 24.7 7.0 46 76-124 22-71 (199)
139 PTZ00129 40S ribosomal protein 20.2 2.2E+02 0.0047 25.1 4.9 84 30-118 49-136 (149)
140 PF04868 PDE6_gamma: Retinal c 20.2 41 0.00089 25.8 0.4 7 449-455 62-68 (83)
No 1
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=100.00 E-value=3.4e-81 Score=667.25 Aligned_cols=432 Identities=47% Similarity=0.811 Sum_probs=365.4
Q ss_pred CHHHHHHHHhc--cchhcCCHHHHHHhhcCCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCC-CCCCeEE
Q psy1654 4 NEDVVREMMKK--DDAFFKNKEAMSDLFLKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPN-FKESGII 80 (459)
Q Consensus 4 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~-~~~~~Vv 80 (459)
++..++|+..+ . .+.++|+++|.+++.|||+||||+++.+++.+|+.++.++|+|+|.+|.+.++. .++++|+
T Consensus 18 ~~~~~~~~~~~~~~----~~~~~l~~~f~~~i~FGT~GiRG~~g~~~~~~n~~~v~~~~~a~a~~l~~~~~~~~~~~~Vv 93 (584)
T PTZ00150 18 DPETRKEIEELLAS----KDEEELKRRFLKRMEFGTAGLRGKMGAGFNCMNDLTVQQTAQGLCAYVIETFGQALKSRGVV 93 (584)
T ss_pred CHHHHHHHHHHHhC----CCHHHHHHHhCCCCcccCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcccccCCCcEE
Confidence 45566666655 1 126899999999999999999999999999999999999999999999765431 1135699
Q ss_pred EEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCc
Q psy1654 81 VGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISP 160 (459)
Q Consensus 81 Vg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~ 160 (459)
||||+|.+|++|++++++||+++|+ +|+++++.+|||+++|+++++++.|||||||||||++||||||++++|.++.++
T Consensus 94 Vg~D~R~~S~~fa~~~a~~L~a~Gi-~V~~~g~~~pTP~lsfav~~~~a~gGImITASHNP~eyNGiK~~~~~G~~i~~~ 172 (584)
T PTZ00150 94 IGYDGRYHSRRFAEITASVFLSKGF-KVYLFGQTVPTPFVPYAVRKLKCLAGVMVTASHNPKEDNGYKVYWSNGAQIIPP 172 (584)
T ss_pred EEeCCCCCcHHHHHHHHHHHHHCCC-EEEEeCCCCCcHHHHHHHHHhCCCeEEEEeccCCCCCCCCEEEeCCCCcccCCc
Confidence 9999999999999999999999999 999993399999999999999999999999999999999999999999999888
Q ss_pred chHHHHHHHHhhccccccccchhhccCCCCCCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHH
Q psy1654 161 IDKQIQEEIMRNLEIEDHIWNIDRIRDQIQPCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFK 240 (459)
Q Consensus 161 ~~~~i~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~ 240 (459)
.++++++.|++.+..+.+.|++. ..+.+.....++.+.|++.+.+.++. +.++.+++|||+||+||+++.+++++|+
T Consensus 173 ~~~~i~~~Ie~~~~~~~~~~~~~--~~~~~~~~~~d~~~~Yi~~l~~~i~~-~~i~~~~lkIv~d~~~G~g~~~~~~iL~ 249 (584)
T PTZ00150 173 HDKNISAKILSNLEPWSSSWEYL--TETLVEDPLAEVSDAYFATLKSEYNP-ACCDRSKVKIVYTAMHGVGTRFVQKALH 249 (584)
T ss_pred ccHHHHHHHHHhccccccchhhh--ccccccchhhhhHHHHHHHHHhhcCh-hhhccCCCeEEEeCCCCccHHHHHHHHH
Confidence 78889888887642222233221 10112111236688999999988762 3356679999999999999999999999
Q ss_pred HcCCCCeEEeccccccCCCCCCCCCCCCCC-chhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhh
Q psy1654 241 LFKFKPLVLVDAQCSPDPEFPTVRFPNPEE-PSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELG 319 (459)
Q Consensus 241 ~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~-~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~ 319 (459)
+|||+.++++.+++.|||.||+.+.|+|+. +++++.+.+.+++.++|+|+++||||||++++++.+ ++|+++++|+++
T Consensus 250 ~lG~~~~~~v~~~~~pDg~Fp~~~~PnPe~~~~~l~~~~~~v~~~~adlgia~DpDaDR~~vvd~~g-~~~~~l~gd~l~ 328 (584)
T PTZ00150 250 TVGLPNLLSVAQQAEPDPEFPTVTFPNPEEGKGALKLSMETAEAHGSTVVLANDPDADRLAVAEKLN-NGWKIFTGNELG 328 (584)
T ss_pred hcCCCCceEeccccccCcCCCCCCCcChhhhHHHHHHHHHHHHHhCCCEEEEeCCCCCceEEEEEcC-CceEEcChhHHH
Confidence 999975445778999999999877899987 889999999999999999999999999999999742 267999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEeccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCC-eEEEEEecCCc
Q psy1654 320 ALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGK-HVLLAFEEAIG 398 (459)
Q Consensus 320 ~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~-~~~l~~E~sgg 398 (459)
+|+++++++..+. .+...++..||.|++||.+++++|+++|+++++|+||||||+++|.+..+.+. .++||||||||
T Consensus 329 aLla~~ll~~~~~--~g~~~~~~~Vv~tv~sS~~l~~ia~~~g~~v~~t~tGfk~I~~~m~~~~~~~~~~~~~ggEeSgG 406 (584)
T PTZ00150 329 ALLAWWAMKRYRR--QGIDKSKCFFICTVVSSRMLKKMAEKEGFQYDETLTGFKWIGNKAIELNAENGLTTLFAYEEAIG 406 (584)
T ss_pred HHHHHHHHHhhhh--cCCCCCCcEEEEehhhhHHHHHHHHHcCCEEEECCCChHHHHHHHHHHHhcCCceEEEEEeccCc
Confidence 9999999876322 12111234699999999999999999999999999999999999987543332 48999999999
Q ss_pred cccCCCcccCcHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccccc
Q psy1654 399 FMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADVYDKGNCIT 446 (459)
Q Consensus 399 ~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~Ls~ll~~lp~~y~~~~ 446 (459)
|++++|.+++|||+++++++|++++++.+|++|++++++||++||+++
T Consensus 407 ~~~~~~~~~kDgi~aal~ile~~~~l~~~g~sL~e~l~~l~~~~G~~~ 454 (584)
T PTZ00150 407 FMLGTRVRDKDGVTAAAVVAEMALYLYERGKTLVEHLESLYKQYGYHF 454 (584)
T ss_pred ccCCCCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCc
Confidence 999999999999999999999988888899999999999999999555
No 2
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=100.00 E-value=5.1e-77 Score=625.91 Aligned_cols=415 Identities=44% Similarity=0.728 Sum_probs=345.9
Q ss_pred CcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 32 RLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 32 ~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
++.|||+||||+++.+|+++|++++.++|+|||++++++.++.++++|+||||+|.+|+++++++++||+++|+ +|+++
T Consensus 1 ~~~Fgt~giRg~~~~~~~~l~~~~~~~l~~a~~~~l~~~~~~~~~~~V~Vg~D~R~~s~~~~~a~~~gL~s~Gi-~V~~~ 79 (487)
T cd05799 1 RLEFGTAGLRGKMGAGTNRMNDYTVRQATQGLANYLKKKGPDAKNRGVVIGYDSRHNSREFAELTAAVLAANGI-KVYLF 79 (487)
T ss_pred CCcccCcccccccCCCCccccHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCCCChHHHHHHHHHHHHHCCC-EEEEe
Confidence 47899999999999999999999999999999999986542222467999999999999999999999999999 99999
Q ss_pred CC-CccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccch---hhccC
Q psy1654 112 SR-VCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNI---DRIRD 187 (459)
Q Consensus 112 ~g-~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~---~~~~~ 187 (459)
| .+|||+++|++++++++|||||||||||++||||||++++|.++.++..++|++.+++.. .+.+ .....
T Consensus 80 -g~~~ptP~~~~~i~~~~~~gGI~iTaSHnp~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~-----~~~~~~~~~~~~ 153 (487)
T cd05799 80 -DDLRPTPLLSFAVRHLGADAGIMITASHNPKEYNGYKVYWEDGAQIIPPHDAEIAEEIEAVL-----EPLDIKFEEALD 153 (487)
T ss_pred -CCCCCCcHHHHHHHHhCCCeeEEEEeeCCCcccCCEEEecCCCCcCCCHHHHHHHHHHHhcc-----cccccchhhhcc
Confidence 8 999999999999999999999999999999999999999999998765555554443211 1111 00011
Q ss_pred -CCCCCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCC
Q psy1654 188 -QIQPCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFP 266 (459)
Q Consensus 188 -~~~~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p 266 (459)
+.+.....++.+.|++.|++.++...+++.+++||||||+||+++.+++.+|++|||+.++++.+++.|||.||+.+.|
T Consensus 154 ~g~~~~~~~~~~~~Y~~~l~~~i~~~~~~~~~~~kVvvD~~~G~~~~~~~~il~~LG~~~v~~~~~~~~~d~~F~~~~~p 233 (487)
T cd05799 154 SGLIKYIGEEIDDAYLEAVKKLLVNPELNEGKDLKIVYTPLHGVGGKFVPRALKEAGFTNVIVVEEQAEPDPDFPTVKFP 233 (487)
T ss_pred CCceEEcchHHHHHHHHHHHhhhcccccccCCCCcEEEeCCCCccHHHHHHHHHHcCCCCcEEeeeccCCCcCCCCCCCC
Confidence 3322111267899999999988732233678999999999999999999999999998224566799999999986679
Q ss_pred CCCCchhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEE
Q psy1654 267 NPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLA 346 (459)
Q Consensus 267 ~p~~~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~ 346 (459)
+|+.+.+|+.+.+.|++.++|+|+++||||||+.++|++++|+|+++++|++++|+++++++..+.. +....+..||.
T Consensus 234 ~p~~~~~l~~l~~~v~~~~ad~Gia~D~DgDR~~vvd~~~~~~g~~~~~d~l~aL~a~~ll~~~~~~--~~~~~~~~vV~ 311 (487)
T cd05799 234 NPEEPGALDLAIELAKKVGADLILATDPDADRLGVAVKDKDGEWRLLTGNEIGALLADYLLEQRKEK--GKLPKNPVIVK 311 (487)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEeCCCCCeEEEEEEcCCCCEEEECHHHHHHHHHHHHHHhHhhc--cCCCCCcEEEE
Confidence 9998889999999999999999999999999999999742255699999999999999988763210 00001335999
Q ss_pred eccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHh
Q psy1654 347 STVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDS 426 (459)
Q Consensus 347 ~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~ 426 (459)
|+.||++++++|+++|++|+||||||++++++|.+....+.+++||||+|||++|+++.+++|||+++++++||++.+++
T Consensus 312 ~v~sS~~i~~ia~~~g~~v~~t~~G~~~i~~~m~~~~~~~~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~lle~la~~~~ 391 (487)
T cd05799 312 TIVSSELLRKIAKKYGVKVEETLTGFKWIGNKIEELESGGKKFLFGFEESIGYLVGPFVRDKDGISAAALLAEMAAYLKA 391 (487)
T ss_pred eehhHHHHHHHHHHcCCeEEECCCCchHHHHHHHHHhccCceEEEEEeccceeeeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976533334689999999999999999999999999999999997777
Q ss_pred CCCCHHHHHHHHHHhccccc---CcccC---CCCc
Q psy1654 427 QGKDLHQLLADVYDKGNCIT---GGFID---PKSK 455 (459)
Q Consensus 427 ~~~~Ls~ll~~lp~~y~~~~---~~~~~---~~~~ 455 (459)
++++|+++++++|++|++.+ ..++| ||..
T Consensus 392 ~~~~Ls~l~~~l~~~y~~~~~~~~~i~~~~~~~~~ 426 (487)
T cd05799 392 QGKTLLDRLDELYEKYGYYKEKTISITFEGKEGPE 426 (487)
T ss_pred cCCCHHHHHHHHHHHhCceEEeeeeEEEeCCCCHH
Confidence 89999999999999886443 24778 6754
No 3
>KOG1220|consensus
Probab=100.00 E-value=5.3e-76 Score=590.52 Aligned_cols=423 Identities=45% Similarity=0.739 Sum_probs=377.1
Q ss_pred CHHHHHHhhcCCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHH
Q psy1654 21 NKEAMSDLFLKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVF 100 (459)
Q Consensus 21 ~~~~~~~~~~~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL 100 (459)
+...|++++..|+.|||.|+||.+..||+.||+.++.++|+.||.++.++++. ++..|+||||.|++|+.|+++++++|
T Consensus 48 d~~~L~~~~d~Ri~fgt~GlRg~m~agf~~mnel~~iq~~qg~a~yl~~~~~~-~~~giviG~D~R~~S~~fA~l~a~vf 126 (607)
T KOG1220|consen 48 DWDALQKRLDTRIKFGTAGLRGEMRAGFSRMNELTAIQFGQGLAAYLKNQFPS-KNLGIVIGHDGRYNSKRFAELVAAVF 126 (607)
T ss_pred HHHHHHhhcccceeeeccccccccccCchhhhHHHHHHHHHHHHHHHHHhCCc-ccceEEEecCCccchHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999875 45689999999999999999999999
Q ss_pred HhCCCcEEEEcCCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhcccccccc
Q psy1654 101 LNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIW 180 (459)
Q Consensus 101 ~~~G~~~V~~~~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~ 180 (459)
..+|+ .|++++..+|||++.|++..++|++||||||||||+++||+|+|+.||++|.+|++++|.+.|++.+.+....|
T Consensus 127 ~~~g~-~v~lf~~~v~TP~vpfav~~l~~dAgIMiTASHnPk~dNGyKvYwsNG~qii~PhD~~I~~~~~~nl~p~~s~w 205 (607)
T KOG1220|consen 127 LLNGF-KVYLFSELVPTPFVPFAVLTLGADAGIMITASHNPKEDNGYKVYWSNGAQIISPHDEKISDSIEANLEPRLSSW 205 (607)
T ss_pred HhCCc-eEEEeccccCCCcchhHHHHhccCceEEEeccCCccccCCEEEEecCCccccCchhHHHHHHHHhccCcccchh
Confidence 99999 99999449999999999999999999999999999999999999999999999999999999999887655445
Q ss_pred chhhccC-CCCCCCcchHHHHHHHHHHhcccc--cCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccC
Q psy1654 181 NIDRIRD-QIQPCPLDSVLEKYGQSVLDGAYD--LGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPD 257 (459)
Q Consensus 181 ~~~~~~~-~~~~~~~~~~~~~Y~~~l~~~~~~--~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd 257 (459)
+...+.. ....++..-..+.|.+.+.+++.. ++.+...++++|++++||+++.++..+|+++|+...+.+.++++||
T Consensus 206 d~slv~s~~l~~d~~~~~~~~~~e~~k~~l~~~~~e~n~~s~~~fVyta~hGvG~~F~~~al~~~~~~~~~~v~eq~~Pd 285 (607)
T KOG1220|consen 206 DDSLVKSHPLLHDILAVIIPPYFEVYKELLPCFHREANPLSGLKFVYTAGHGVGGFFVKKALEKLGLDTMISVPEQLEPD 285 (607)
T ss_pred hhhHHhcchhhcCchhccchHHHHHHHhcCccHhhhhccCCCceEEEecCCCccHHHHHHHHHHhCCCccccchhhcCCC
Confidence 5433322 222222233456688888876653 4566788999999999999999999999999998767788999999
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCC
Q psy1654 258 PEFPTVRFPNPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNA 337 (459)
Q Consensus 258 ~~f~~~~~p~p~~~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~ 337 (459)
|.||+.+.||||++.+|+...+.+.++++|+++++|||+||++++++ .+|+|+.++||++.+|+++++++.++...+.
T Consensus 286 p~FPt~~~PNPEek~aL~ls~~~a~~n~~dlvlanDpDaDR~avaek-~~G~wr~fnGNElgALl~~~~le~~k~~~~~- 363 (607)
T KOG1220|consen 286 PMFPTVPFPNPEEKGALDLSIKAALKNSADLVLANDPDADRFAVAEK-VSGEWRVFNGNELGALLSWWVLEEHKGSTPV- 363 (607)
T ss_pred CCCCCCCCCCcchHHHHHHHHHHHhccCCcEEEecCCCcchhhheec-cCCcceeccchHHHHHHHHHHHHhccCCCcc-
Confidence 99999999999999999999999999999999999999999999998 6899999999999999999999986643322
Q ss_pred CCCCceEEEeccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHH
Q psy1654 338 PLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRM 417 (459)
Q Consensus 338 ~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~i 417 (459)
....+..+.+||.+++.+|+..|++..+|.||||||.+++.++.++++.+.||+|||+||+++.++..+||+++++++
T Consensus 364 --~~~~ml~s~vSs~l~~~ia~~eGf~~~~tltGFKwvgnrAieL~k~G~~v~fA~Ees~gym~g~~~~dkDGv~a~v~~ 441 (607)
T KOG1220|consen 364 --QDVSMLNSTVSSGLTRFIAEIEGFHHEETLTGFKWVGNRAIELEKDGKEVHFAFEESIGYMFGENHLDKDGVSAAVKF 441 (607)
T ss_pred --chhhhhhhHHHHHHHHHHHHHhCceeeeccccchhhhHHHHHHHhcCceeeeeehhhcCcccccCccCcchHHHHHHH
Confidence 122346678899999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHHh-CCCCHHHHHHHHHHhcccccCcc
Q psy1654 418 AELVAYLDS-QGKDLHQLLADVYDKGNCITGGF 449 (459)
Q Consensus 418 le~la~~~~-~~~~Ls~ll~~lp~~y~~~~~~~ 449 (459)
++|+++++. ++.+|++.+.+++++|+++....
T Consensus 442 a~~~~~lr~~~~~sl~e~l~~l~e~yg~~~~~~ 474 (607)
T KOG1220|consen 442 ASMACRLRLAGNLSLSEVLEDLYERYGYHSTAN 474 (607)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhCccceee
Confidence 999999854 67999999999999999876543
No 4
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=100.00 E-value=1.2e-75 Score=608.71 Aligned_cols=373 Identities=26% Similarity=0.342 Sum_probs=323.3
Q ss_pred ccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCC
Q psy1654 34 KFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSR 113 (459)
Q Consensus 34 ~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g 113 (459)
+||++||||++|+ +|||+++.++|+|||++++++. +++|+||||+|.+|++|++++++||+++|+ +|+++ |
T Consensus 1 ~Fg~~giRG~~~~---~lt~~~v~~l~~a~~~~l~~~~----~~~VvVg~D~R~~s~~~~~a~~~gL~s~G~-~V~~~-g 71 (443)
T cd03089 1 IFRAYDIRGIAGE---ELTEEIAYAIGRAFGSWLLEKG----AKKVVVGRDGRLSSPELAAALIEGLLAAGC-DVIDI-G 71 (443)
T ss_pred CCcccccceeeCC---ccCHHHHHHHHHHHHHHHHhcC----CCeEEEEECCCCCHHHHHHHHHHHHHHcCC-cEEEe-C
Confidence 6999999999998 8999999999999999997632 357999999999999999999999999999 99999 9
Q ss_pred CccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccch-hhccCCCCCC
Q psy1654 114 VCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNI-DRIRDQIQPC 192 (459)
Q Consensus 114 ~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~-~~~~~~~~~~ 192 (459)
.+|||+++|++++++++|||||||||||++||||||+++ |.++.++..++|++.+.+. .+.+ ... +.+..
T Consensus 72 ~~pTP~~~~~v~~~~a~gGI~ITASHNP~~~nGiK~~~~-G~~~~~~~~~~Ie~~~~~~------~~~~~~~~--g~~~~ 142 (443)
T cd03089 72 LVPTPVLYFATFHLDADGGVMITASHNPPEYNGFKIVIG-GGPLSGEDIQALRERAEKG------DFAAATGR--GSVEK 142 (443)
T ss_pred CcchHHHHHHHhccCCCeEEEEecCCCCcccCceEeccC-CCCCCHHHHHHHHHHHHhc------cccccCCC--CcEEE
Confidence 999999999999999999999999999999999999999 9998765444444333221 1211 111 33322
Q ss_pred CcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCch
Q psy1654 193 PLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPS 272 (459)
Q Consensus 193 ~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~ 272 (459)
.+..+.|++.+++.++. + .+++|||+||+||+++.+++++|++|||++ + .+|+.|||.||+ +.|+|+.++
T Consensus 143 --~d~~~~Y~~~l~~~i~~-~---~~~lkVvvd~~~G~~~~~~~~ll~~lG~~v-~--~i~~~~d~~F~~-~~p~p~~~~ 212 (443)
T cd03089 143 --VDILPDYIDRLLSDIKL-G---KRPLKVVVDAGNGAAGPIAPQLLEALGCEV-I--PLFCEPDGTFPN-HHPDPTDPE 212 (443)
T ss_pred --CCCHHHHHHHHHHhccc-c---cCCCeEEEECCCCchHHHHHHHHHHCCCEE-E--EecCCCCCCCCC-CCcCCCCHH
Confidence 36789999999998862 2 278999999999999999999999999974 3 459999999998 579998888
Q ss_pred hHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccchH
Q psy1654 273 SLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSK 352 (459)
Q Consensus 273 ~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss~ 352 (459)
+++.+.+.+++.++|+|+++||||||++++| ++| +++++|++++|+++++++. .+ +..||.|++||.
T Consensus 213 ~l~~l~~~v~~~~adlgia~D~DaDR~~ivd--~~G--~~l~~d~~~~lla~~ll~~----~~-----~~~vv~~v~ss~ 279 (443)
T cd03089 213 NLEDLIAAVKENGADLGIAFDGDGDRLGVVD--EKG--EIIWGDRLLALFARDILKR----NP-----GATIVYDVKCSR 279 (443)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCcceeEEEC--CCC--cEeCHHHHHHHHHHHHHHH----CC-----CCeEEEecccch
Confidence 9999999999999999999999999999998 489 7899999999999999875 22 225899999999
Q ss_pred HHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCC-CcccCcHHHHHHHHHHHHHHHHhCCCCH
Q psy1654 353 ILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGT-HVLDKDGVTAAVRMAELVAYLDSQGKDL 431 (459)
Q Consensus 353 ~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~-~~~~~Dgi~a~l~ile~la~~~~~~~~L 431 (459)
+++++|+++|++++|||||++|++++|.+. +++||||+|||+++++ |.+++|||+++++++|+++. ++++|
T Consensus 280 ~~~~ia~~~g~~v~~t~vG~k~v~~~m~~~-----~~~~ggE~sgg~~~~~~~~~~~Dgi~a~l~ile~la~---~~~~L 351 (443)
T cd03089 280 NLYDFIEEAGGKPIMWKTGHSFIKAKMKET-----GALLAGEMSGHIFFKDRWYGFDDGIYAALRLLELLSK---SGKTL 351 (443)
T ss_pred HHHHHHHHcCCeEEEecCcHHHHHHHHHHh-----CCcEEEeccceEEEcCCcCCCccHHHHHHHHHHHHHh---cCCCH
Confidence 999999999999999999999999998653 5899999999999999 99999999999999999995 89999
Q ss_pred HHHHHHHHHhcccccCcccCCCCc
Q psy1654 432 HQLLADVYDKGNCITGGFIDPKSK 455 (459)
Q Consensus 432 s~ll~~lp~~y~~~~~~~~~~~~~ 455 (459)
+++++++|+.|......+.|||..
T Consensus 352 sel~~~~p~~~~~~~~~~~~~~~~ 375 (443)
T cd03089 352 SELLADLPKYFSTPEIRIPVTEED 375 (443)
T ss_pred HHHHHhccccCCCCceeccCCchh
Confidence 999999998433333347899964
No 5
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=100.00 E-value=2.9e-75 Score=608.92 Aligned_cols=384 Identities=26% Similarity=0.348 Sum_probs=329.2
Q ss_pred cccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcC
Q psy1654 33 LKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVS 112 (459)
Q Consensus 33 ~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~ 112 (459)
+.|||+||||++|+ +|||+++.++|+|||++++++.. ++++|+||||+|.+|++|++++++||+++|+ +|+++.
T Consensus 1 ~~Fgt~GiRG~~~~---~lt~~~~~~lg~a~~~~l~~~~~--~~~~Vvvg~D~R~ss~~l~~a~~~gL~s~G~-~V~~~~ 74 (461)
T cd05800 1 IKFGTDGWRGIIAE---DFTFENVRRVAQAIADYLKEEGG--GGRGVVVGYDTRFLSEEFARAVAEVLAANGI-DVYLSD 74 (461)
T ss_pred CCccCccccccccC---CccHHHHHHHHHHHHHHHHHhCC--CCCeEEEEeCCCcCcHHHHHHHHHHHHHCCC-EEEEcC
Confidence 47999999999998 89999999999999999976321 1467999999999999999999999999999 999995
Q ss_pred CCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccCCCCCC
Q psy1654 113 RVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQIQPC 192 (459)
Q Consensus 113 g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~~~~~~ 192 (459)
|.+|||+++|++++++++|||||||||||++||||||++++|.++++...++|++.+++... ........ +.+.
T Consensus 75 g~~pTP~~~~a~~~~~~~gGI~ITaSHnp~~~ngiK~~~~~G~~i~~~~~~~ie~~~~~~~~---~~~~~~~~--g~i~- 148 (461)
T cd05800 75 RPVPTPAVSWAVKKLGAAGGVMITASHNPPEYNGVKVKPAFGGSALPEITAAIEARLASGEP---PGLEARAE--GLIE- 148 (461)
T ss_pred CCCCchHHHHHHHHhCCCeeEEEccCCCCcccCeEEEeCCCCCcCChHHHHHHHHHHhhccc---cccccccC--Ccee-
Confidence 69999999999999999999999999999999999999999999986644444443332210 00000111 3332
Q ss_pred CcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCch
Q psy1654 193 PLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPS 272 (459)
Q Consensus 193 ~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~ 272 (459)
..+..+.|++++++.++ .+.++++++||||||+||+++.+++++|++|||++ +. +|+.|||.||+ +.|+|+ ++
T Consensus 149 -~~~~~~~Y~~~l~~~~~-~~~i~~~~~kivvd~~~G~~~~~~~~il~~lg~~v-~~--~~~~~dg~F~~-~~p~p~-~~ 221 (461)
T cd05800 149 -TIDPKPDYLEALRSLVD-LEAIREAGLKVVVDPMYGAGAGYLEELLRGAGVDV-EE--IRAERDPLFGG-IPPEPI-EK 221 (461)
T ss_pred -ecCCHHHHHHHHHHHhC-hhhhhcCCceEEEeCCCCCcHHHHHHHHHHcCCCE-EE--eeCCcCCCCCC-CCCCCC-HH
Confidence 24678999999999887 34556789999999999999999999999999984 33 59999999998 469998 68
Q ss_pred hHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccchH
Q psy1654 273 SLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSK 352 (459)
Q Consensus 273 ~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss~ 352 (459)
++..+.+.|++.+||+|+++||||||+.++|+ +| +++++|++++|+++++++..+ .+ ..||.|+.||+
T Consensus 222 ~l~~l~~~v~~~~ad~Gia~D~DgDR~~vvd~--~G--~~l~~d~~~al~a~~ll~~~~--~~------~~vv~~v~ss~ 289 (461)
T cd05800 222 NLGELAEAVKEGGADLGLATDGDADRIGAVDE--KG--NFLDPNQILALLLDYLLENKG--LR------GPVVKTVSTTH 289 (461)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCeEEEEeC--CC--ceeCHHHHHHHHHHHHHHcCC--CC------CcEEEEcchHH
Confidence 99999999999999999999999999999994 89 789999999999999887411 11 24899999999
Q ss_pred HHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCCCHH
Q psy1654 353 ILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLH 432 (459)
Q Consensus 353 ~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~Ls 432 (459)
+++++++++|+++++||||+++++++|.+. +++||+|+|||++|+++.+++|||++++++||+++. ++++|+
T Consensus 290 ~~~~~a~~~g~~v~~t~~G~~~v~~~~~~~-----~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ile~la~---~~~~L~ 361 (461)
T cd05800 290 LIDRIAEKHGLPVYETPVGFKYIAEKMLEE-----DVLIGGEESGGLGIRGHIPERDGILAGLLLLEAVAK---TGKPLS 361 (461)
T ss_pred HHHHHHHHhCCeeeeCCCCHHHHHHHHhhC-----CeEEEEcCcCceeCCCCCCCchHHHHHHHHHHHHHh---hCCCHH
Confidence 999999999999999999999999998652 589999999999999999999999999999999984 789999
Q ss_pred HHHHHHHHhcc---cccCcccCCCCc
Q psy1654 433 QLLADVYDKGN---CITGGFIDPKSK 455 (459)
Q Consensus 433 ~ll~~lp~~y~---~~~~~~~~~~~~ 455 (459)
++++++|++|+ ..+..++|||..
T Consensus 362 ~l~~~l~~~~g~~~~~~~~i~~~~~~ 387 (461)
T cd05800 362 ELVAELEEEYGPSYYDRIDLRLTPAQ 387 (461)
T ss_pred HHHHHHHHHhCCCceeecCeecCHHH
Confidence 99999999765 456678899864
No 6
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=3.3e-75 Score=605.38 Aligned_cols=379 Identities=20% Similarity=0.266 Sum_probs=325.2
Q ss_pred ccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCC
Q psy1654 34 KFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSR 113 (459)
Q Consensus 34 ~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g 113 (459)
+|||+||||++|+ +|||+++.++|+|||+++.++.. +++|+||||+|++|++|++++++||+++|+ +|+++ |
T Consensus 1 ~f~~~GiRG~~~~---~lt~~~v~~l~~a~~~~l~~~~~---~~~Vvvg~D~R~~s~~l~~a~~~gL~~~G~-~V~~~-g 72 (445)
T cd05803 1 IISISGIRGIVGE---GLTPEVITRYVAAFATWQPERTK---GGKIVVGRDGRPSGPMLEKIVIGALLACGC-DVIDL-G 72 (445)
T ss_pred CCCcCceeeecCC---CCCHHHHHHHHHHHHHHHHhcCC---CCeEEEEeCCCCCHHHHHHHHHHHHHHCCC-eEEEe-C
Confidence 5999999999998 79999999999999999975321 467999999999999999999999999999 99999 8
Q ss_pred CccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccC-CCCCC
Q psy1654 114 VCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRD-QIQPC 192 (459)
Q Consensus 114 ~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~-~~~~~ 192 (459)
.+|||+++|+++++++++||||||||||++||||||++++|.+++++..+++++.+.+. .+.+..... +.+..
T Consensus 73 ~~pTP~~~~a~~~~~~~~GI~ITaShnp~~~nGiK~~~~~G~~~~~~~~~~i~~~~~~~------~~~~~~~~~~g~~~~ 146 (445)
T cd05803 73 IAPTPTVQVLVRQSQASGGIIITASHNPPQWNGLKFIGPDGEFLTPDEGEEVLSCAEAG------SAQKAGYDQLGEVTF 146 (445)
T ss_pred CCCchHHHHHHHHhCCCeeEEEEecCCCcccccEEEECCCCCcCCHHHHHHHHHHHhcc------cccccccccCcceec
Confidence 99999999999999999999999999999999999999999999865444444332221 222111111 33322
Q ss_pred CcchHHHHHHHHHHhcccccCccC--CCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC
Q psy1654 193 PLDSVLEKYGQSVLDGAYDLGLNE--KSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE 270 (459)
Q Consensus 193 ~~~~~~~~Y~~~l~~~~~~~~~~~--~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~ 270 (459)
..++.+.|++.+.+.++ .+.++ .+++||||||+||+++.+++++|++|||++ + .+|++|||.||. .|+|.
T Consensus 147 -~~~~~~~Y~~~l~~~~~-~~~~~~~~~~lkVvvd~~~G~~~~~~~~ll~~lg~~v-~--~~~~~~d~~F~~--~p~p~- 218 (445)
T cd05803 147 -SEDAIAEHIDKVLALVD-VDVIKIRERNFKVAVDSVNGAGGLLIPRLLEKLGCEV-I--VLNCEPTGLFPH--TPEPL- 218 (445)
T ss_pred -cCchHHHHHHHHHhhcc-cchhhhccCCCEEEEECCCCcHHHHHHHHHHHcCCEE-E--EeCCcCCCCCCC--CCCCC-
Confidence 24678999999999876 34333 679999999999999999999999999984 3 359999999984 57777
Q ss_pred chhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccc
Q psy1654 271 PSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVS 350 (459)
Q Consensus 271 ~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~s 350 (459)
+++++.+.+.+++.++|+|+++||||||++++| ++| +++++|++++|+++++++..+ .+ + .||.|+.|
T Consensus 219 ~~~l~~l~~~v~~~~adlgi~~D~DgDR~~ivd--~~G--~~i~~d~~~al~a~~ll~~~~--~~-----~-~vv~~v~s 286 (445)
T cd05803 219 PENLTQLCAAVKESGADVGFAVDPDADRLALVD--EDG--RPIGEEYTLALAVDYVLKYGG--RK-----G-PVVVNLST 286 (445)
T ss_pred hHHHHHHHHHHHhcCCCEEEeeCCCCceEEEEC--CCC--CCcChHHHHHHHHHHHHHhcC--CC-----C-CEEEeccc
Confidence 578999999999999999999999999999999 489 569999999999999987411 11 2 38899999
Q ss_pred hHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCCC
Q psy1654 351 SKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKD 430 (459)
Q Consensus 351 s~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~ 430 (459)
|++++++|+++|++++||||||+|++++|.+. +++||+|+|||++|+++.+++|||++++++||+++. ++++
T Consensus 287 s~~i~~ia~~~g~~v~~t~vG~~~i~~~~~~~-----~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~la~---~~~~ 358 (445)
T cd05803 287 SRALEDIARKHGVPVFRSAVGEANVVEKMKEV-----DAVIGGEGNGGVILPDVHYGRDSLVGIALVLQLLAA---SGKP 358 (445)
T ss_pred hHHHHHHHHHcCCEEEEecccHHHHHHHHHhc-----CCeEEEeccCCeecCCccccccHHHHHHHHHHHHHh---cCCC
Confidence 99999999999999999999999999998653 579999999999999999999999999999999984 8999
Q ss_pred HHHHHHHHHHhcccccCcccCCCCc
Q psy1654 431 LHQLLADVYDKGNCITGGFIDPKSK 455 (459)
Q Consensus 431 Ls~ll~~lp~~y~~~~~~~~~~~~~ 455 (459)
|+++++++|. |.+.+..++|||..
T Consensus 359 L~~l~~~~~~-~~~~~~~v~~~~~~ 382 (445)
T cd05803 359 LSEIVDELPQ-YYISKTKVTIAGEA 382 (445)
T ss_pred HHHHHHhchh-hheeeeeeeccHHh
Confidence 9999999998 66677899999964
No 7
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.4e-74 Score=600.54 Aligned_cols=370 Identities=21% Similarity=0.256 Sum_probs=320.7
Q ss_pred cccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcC
Q psy1654 33 LKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVS 112 (459)
Q Consensus 33 ~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~ 112 (459)
.+|||+||||++|+ +|||+++.++|+|||++++. ++|+||||+|.+|++|++++++||+++|+ +|+++
T Consensus 3 ~~Fgt~GiRG~~~~---~lt~e~~~~lg~a~~~~l~~-------~~VvVg~D~R~~s~~l~~a~~~gL~s~G~-~V~~~- 70 (449)
T PRK14321 3 KYFGTSGIREVVNE---KLTPELALKVGLALGTYLGG-------GKVVVGKDTRTSSEMLKNALISGLLSTGV-DVIDI- 70 (449)
T ss_pred cccccCCeeEEcCC---CCCHHHHHHHHHHHHhhccC-------CcEEEEeCCCCChHHHHHHHHHHHHHCCC-eEEEe-
Confidence 78999999999998 89999999999999999853 37999999999999999999999999999 99999
Q ss_pred CCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccC-CCCC
Q psy1654 113 RVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRD-QIQP 191 (459)
Q Consensus 113 g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~-~~~~ 191 (459)
|.+|||+++|+++++++.|||||||||||++||||||++.+|.++++...+++++.+++ +++.+..... |.+.
T Consensus 71 g~~pTP~~~~av~~~~~~gGI~ITaSHnP~~~nGiK~~~~~G~~i~~~~~~~ie~~~~~------~~~~~~~~~~~g~~~ 144 (449)
T PRK14321 71 GLAPTPLTGFAIKLYNADAGVTITASHNPPEYNGIKVWQRNGMAYTPEMENELERIIES------GNFKRVPWNEIGTLR 144 (449)
T ss_pred CCcCCcHHHHHHHhcCCCeEEEEEeCCCCHHHCcEEEECCCCCcCCHHHHHHHHHHHhc------ccccccccccCceee
Confidence 99999999999999999999999999999999999999999999876534444333321 1222111111 3332
Q ss_pred CCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCc
Q psy1654 192 CPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEP 271 (459)
Q Consensus 192 ~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~ 271 (459)
..++.+.|+++|++.++. .+++|||+||+||+++.+++.+|++|||++ +. +|++|||.||+ .|+|. +
T Consensus 145 --~~~~~~~Y~~~l~~~~~~-----~~~~kVvvD~~~G~~~~~~~~il~~lg~~v-~~--i~~~~d~~f~~--~p~p~-~ 211 (449)
T PRK14321 145 --RADPKEEYIKAALEMIKL-----ENSYTVVVDSGNGAGSILSPYLQRELGNKV-IS--LNSHPSGFFVR--ELEPN-A 211 (449)
T ss_pred --ecccHHHHHHHHHHhcCc-----CCCCEEEEECCCchHHHHHHHHHHHcCCEE-EE--eCccCCCCCCC--CCCCc-h
Confidence 246789999999998872 378999999999999999999999999984 33 59999999984 46666 5
Q ss_pred hhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccch
Q psy1654 272 SSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSS 351 (459)
Q Consensus 272 ~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss 351 (459)
++++.+.+.|++.+||+|+++||||||++++| ++| +++.+|++++|+++++++. +++ . .||.|+.||
T Consensus 212 ~~l~~l~~~v~~~~adlGia~DgD~DR~~vvd--~~G--~~~~~d~~~~l~a~~ll~~----~~~----~-~vV~~v~ss 278 (449)
T PRK14321 212 KSLSMLAKTVKVLKADVGIAHDGDADRIGVVD--DQG--NFVEYEVMLSLIAGYMLRK----FGK----G-KIVTTVDAG 278 (449)
T ss_pred hhHHHHHHHHHHCCCCEEEEecCCCceEEEEC--CCC--CEeChHHHHHHHHHHHHHh----CCC----C-cEEEecccc
Confidence 88999999999999999999999999999998 589 6699999999999998774 111 1 489999999
Q ss_pred HHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCCCH
Q psy1654 352 KILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDL 431 (459)
Q Consensus 352 ~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~L 431 (459)
++++++|+++|+++++||||+++++++|.+. ++++|||+||||+|++|++++|||++++++||+++. ++ +|
T Consensus 279 ~~i~~~a~~~g~~v~~t~vG~~~i~~~m~~~-----~~~~ggE~sGg~~~~~~~~~~Dgi~a~~~ile~la~---~~-~L 349 (449)
T PRK14321 279 FALDDYIRPLGGEVIRTRVGDVAVAEELAKH-----GGVFGGEPSGTWIIPQWNLTPDGIFAGALVLEMIDR---LG-PI 349 (449)
T ss_pred HHHHHHHHHcCCEEEEEecChHHHHHHHHhh-----CCEEEecCCCCEEeCCcCCCCCHHHHHHHHHHHHHc---CC-CH
Confidence 9999999999999999999999999988653 579999999999999999999999999999999984 67 99
Q ss_pred HHHHHHHHHhcccccCcccCCCCcc
Q psy1654 432 HQLLADVYDKGNCITGGFIDPKSKR 456 (459)
Q Consensus 432 s~ll~~lp~~y~~~~~~~~~~~~~~ 456 (459)
+++++++|. |.+.+..++|||+.+
T Consensus 350 s~l~~~~~~-~~~~~~~v~~~~~~k 373 (449)
T PRK14321 350 SELAKEVPR-YVTLRAKIPCPNEKK 373 (449)
T ss_pred HHHHHhccc-cccccccccCchhhH
Confidence 999999997 667888999999543
No 8
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=100.00 E-value=1.4e-74 Score=600.36 Aligned_cols=373 Identities=20% Similarity=0.254 Sum_probs=320.4
Q ss_pred ccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCC
Q psy1654 34 KFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSR 113 (459)
Q Consensus 34 ~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g 113 (459)
+|||+||||++|+ +|||+++.++|+|||+++.+ +++|+||||+|.+|++|++++++||+++|+ +|+++ |
T Consensus 1 ~Fgt~giRG~~~~---~lt~~~~~~lg~a~~~~l~~------~~~VvVG~D~R~ss~~~~~a~~~gL~s~G~-~V~~~-g 69 (441)
T cd05805 1 LFGGRGVSGLINV---DITPEFATRLGAAYGSTLPP------GSTVTVSRDASRASRMLKRALISGLLSTGV-NVRDL-G 69 (441)
T ss_pred CCCCCCceEEeCC---CCCHHHHHHHHHHHhhcCCC------CCEEEEEcCCChhHHHHHHHHHHHHHhCCC-eEEec-C
Confidence 5999999999998 89999999999999999864 467999999999999999999999999999 99999 8
Q ss_pred CccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccch---hhccCCCC
Q psy1654 114 VCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNI---DRIRDQIQ 190 (459)
Q Consensus 114 ~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~---~~~~~~~~ 190 (459)
.+|||+++|+++++++++||||||||||++||||||++++|.+++++..++|++.+++. .|.+ ... |.+
T Consensus 70 ~~pTP~~~~av~~~~~~gGi~ITaSHnp~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~------~~~~~~~~~~--g~~ 141 (441)
T cd05805 70 ALPLPVARYAIRFLGASGGIHVRTSPDDPDKVEIEFFDSRGLNISRAMERKIENAFFRE------DFRRAHVDEI--GDI 141 (441)
T ss_pred CcCchHHHHHHHhcCCCeeEEEEeCCCCccceEEEEECCCCCcCCHHHHHHHHHHHhhh------hhccccHhhc--Ccc
Confidence 99999999999999999999999999999999999999999999865444444333221 1211 111 333
Q ss_pred CCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC
Q psy1654 191 PCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE 270 (459)
Q Consensus 191 ~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~ 270 (459)
.. ..+..+.|+++|.+.++ .+.++.+++||||||+||+++.+++++|++|||++ +. +++.|||.|+ +.|+| .
T Consensus 142 ~~-~~~~~~~Y~~~l~~~i~-~~~i~~~~lkIvvd~~~G~~~~~~~~ll~~lG~~v-~~--i~~~~d~~~~--~~~~~-~ 213 (441)
T cd05805 142 TE-PPDFVEYYIRGLLRALD-TSGLKKSGLKVVIDYAYGVAGIVLPGLLSRLGCDV-VI--LNARLDEDAP--RTDTE-R 213 (441)
T ss_pred cc-chhHHHHHHHHHHHHhC-HHHHhhcCCeEEEECCCchHHHHHHHHHHHcCCEE-EE--EecccCCccC--CCCcc-c
Confidence 22 24678999999998876 34455689999999999999999999999999985 34 4999999853 23455 4
Q ss_pred chhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccc
Q psy1654 271 PSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVS 350 (459)
Q Consensus 271 ~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~s 350 (459)
+++++.+.+.|++.++|+|+++||||||++++| ++| +++++|++++|+++++++. + . ...||.|+.|
T Consensus 214 ~~~l~~l~~~v~~~~adlgia~DgDaDR~~vvd--~~G--~~~~gd~l~~l~a~~ll~~-~--~------~~~vv~~v~s 280 (441)
T cd05805 214 QRSLDRLGRIVKALGADFGVIIDPNGERLILVD--EAG--RVISDDLLTALVSLLVLKS-E--P------GGTVVVPVTA 280 (441)
T ss_pred hhHHHHHHHHHHhCCCCEEEEEcCCCCEEEEEC--CCC--CEEChhHHHHHHHHHHHHh-C--C------CCeEEEEccc
Confidence 689999999999999999999999999999998 589 5699999999999998864 1 1 1258999999
Q ss_pred hHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCCC
Q psy1654 351 SKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKD 430 (459)
Q Consensus 351 s~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~ 430 (459)
|.+++++++++|+++++|+|||+|++++|.+ +++||||+|||++|+.+.+++||++++++++|+++. ++++
T Consensus 281 s~~l~~~a~~~g~~~~~t~vG~~~i~~~m~~------~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~lle~la~---~~~~ 351 (441)
T cd05805 281 PSVIEQLAERYGGRVIRTKTSPQALMEAALE------NVVLAGDGDGGFIFPEFHPGFDAIAALVKILEMLAR---TNIS 351 (441)
T ss_pred hHHHHHHHHHcCCEEEEEeCChHHHHHHHHh------cccccccCCCcEEccccccCchHHHHHHHHHHHHHh---cCCC
Confidence 9999999999999999999999999999864 478999999999999999999999999999999984 8999
Q ss_pred HHHHHHHHHHhcccccCcccCCCCcc
Q psy1654 431 LHQLLADVYDKGNCITGGFIDPKSKR 456 (459)
Q Consensus 431 Ls~ll~~lp~~y~~~~~~~~~~~~~~ 456 (459)
|+++++++|+.|+ .+..+.|||...
T Consensus 352 l~~l~~~l~~~~~-~~~~~~~~~~~~ 376 (441)
T cd05805 352 LSQIVDELPRFYV-LHKEVPCPWEAK 376 (441)
T ss_pred HHHHHHhCchhhe-eeeEEECChHHh
Confidence 9999999998665 566889998643
No 9
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3.9e-74 Score=597.43 Aligned_cols=378 Identities=20% Similarity=0.233 Sum_probs=321.1
Q ss_pred CCcccCCCCcceecCCCCCC-CCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEE
Q psy1654 31 KRLKFGTAGIRGPMGVGFSQ-MNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVF 109 (459)
Q Consensus 31 ~~~~Fgt~GiRG~~~~~~~~-ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~ 109 (459)
++.+||++||||++|+ + |||+++.++|+|||+++.+.. .+++|+||||+|.+|++|++++++||+++|+ +|+
T Consensus 2 ~~~~Fg~~giRG~~~~---~~lt~e~~~~lg~a~g~~l~~~~---~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~-~V~ 74 (448)
T PRK14315 2 TRKYFGTDGIRGRANT---FPMTAELALRVGQAAGLYFRRGD---HRHRVVIGKDTRLSGYMIENALVAGFTSVGM-DVL 74 (448)
T ss_pred CCcEECCCCceecCCC---CCCCHHHHHHHHHHHHHhHhhcC---CCceEEEEeCCCCCHHHHHHHHHHHHHHCCC-eEE
Confidence 5789999999999997 7 999999999999999997531 1237999999999999999999999999999 999
Q ss_pred EcCCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccc--hhhccC
Q psy1654 110 LVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWN--IDRIRD 187 (459)
Q Consensus 110 ~~~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~--~~~~~~ 187 (459)
++ |.+|||+++|++++++++|||||||||||++||||||++++|.++++.. +++|++.+. +++. +.....
T Consensus 75 ~~-g~~pTP~~~~a~~~~~~~gGi~ITaSHnP~~~nGiK~~~~~G~~i~~~~----~~~ie~~~~---~~~~~~~~~~~~ 146 (448)
T PRK14315 75 LL-GPIPTPAVAMLTRSMRADLGVMISASHNPFEDNGIKLFGPDGFKLSDEI----ELEIEALLD---GDLDKRLAAPAD 146 (448)
T ss_pred Ee-CCcccHHHHHHHHhcCCCEEEEEEcCCCCcccCCEEEECCCCCcCCHHH----HHHHHHHHh---cccccccccccc
Confidence 99 9999999999999999999999999999999999999999999987653 444444331 1111 100011
Q ss_pred -CCCCCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCC
Q psy1654 188 -QIQPCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFP 266 (459)
Q Consensus 188 -~~~~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p 266 (459)
|.+.. ..++.+.|+++|++.++ .. ++.+++|||+||+||+++.+++.+|++|||++ +. +|+.|||.||+ +.|
T Consensus 147 ~g~~~~-~~~~~~~Y~~~l~~~id-~~-i~~~~lkVvvD~~~G~~~~~~~~ll~~lG~~v-~~--i~~~~dg~~~~-~~~ 219 (448)
T PRK14315 147 IGRAKR-IDDAHGRYIEFAKRTLP-RD-LRLDGLRVVVDCANGAAYKVAPEALWELGAEV-IT--IGVEPNGFNIN-EEC 219 (448)
T ss_pred CcceEE-ecchHHHHHHHHHHhcc-cc-cccCCCEEEEECCCchHHHHHHHHHHHcCCeE-EE--eccCCCCCCCC-CCC
Confidence 32222 23678999999999887 33 56689999999999999999999999999984 33 59999999975 223
Q ss_pred CCCCchhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEE
Q psy1654 267 NPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLA 346 (459)
Q Consensus 267 ~p~~~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~ 346 (459)
.| .+++.+.+.|++.+||+|+++||||||++++| ++| +++++|++++|+++++++..+ .++ + .||.
T Consensus 220 ~~---~~l~~l~~~v~~~~adlGia~DgDgDR~~ivd--~~G--~~i~~d~~~~l~a~~ll~~~~--~~~----~-~vV~ 285 (448)
T PRK14315 220 GS---THPEALAKKVREVRADIGIALDGDADRVIIVD--EKG--HVVDGDQLMALIAESWAEDGR--LRG----G-GIVA 285 (448)
T ss_pred CC---CCHHHHHHHHHHcCCCEEEEEcCCCceEEEEc--CCC--cEeCHHHHHHHHHHHHHHhCC--CCC----C-eEEE
Confidence 33 46888999999999999999999999999999 489 789999999999999987521 111 2 5899
Q ss_pred eccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHh
Q psy1654 347 STVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDS 426 (459)
Q Consensus 347 ~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~ 426 (459)
|+.||.+++++|+++|+++++||||+++++++|.+. +++||||+|||++|++|++++|||++++++||+++.
T Consensus 286 ~v~ss~~i~~~a~~~g~~v~~t~vG~~~i~~~m~~~-----~~~~ggE~sg~~~f~~~~~~~Dgi~a~l~lle~la~--- 357 (448)
T PRK14315 286 TVMSNLGLERFLADRGLTLERTAVGDRYVVEHMREG-----GFNLGGEQSGHIVLSDYATTGDGLVAALQVLAVVVR--- 357 (448)
T ss_pred EecCChHHHHHHHHcCCeEEEeCChHHHHHHHHHhC-----CCceeecccccEeecccCCCCcHHHHHHHHHHHHHH---
Confidence 999999999999999999999999999999998652 589999999999999999999999999999999984
Q ss_pred CCCCHHHHHHHHHHhcccccCcccCCC
Q psy1654 427 QGKDLHQLLADVYDKGNCITGGFIDPK 453 (459)
Q Consensus 427 ~~~~Ls~ll~~lp~~y~~~~~~~~~~~ 453 (459)
++++|+++++++|. |.+.+..++||.
T Consensus 358 ~~~~L~~l~~~~~~-~~~~~~~~~~~~ 383 (448)
T PRK14315 358 SGRPASEVCRRFEP-VPQLLKNVRYSG 383 (448)
T ss_pred hCCCHHHHhhhcCc-CCeeeeEEecCC
Confidence 78999999999997 555666888985
No 10
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=7.7e-74 Score=597.52 Aligned_cols=386 Identities=23% Similarity=0.313 Sum_probs=323.0
Q ss_pred hhcCCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcE
Q psy1654 28 LFLKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKR 107 (459)
Q Consensus 28 ~~~~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~ 107 (459)
-.+++.+|||+||||++|+ +|||+++.++|+|+|+++.++.+ .+++|+||||+|.+|++|++++++||+++|+ +
T Consensus 12 ~~~~~~~Fgt~GIRG~~~~---~ltpe~a~~lg~a~g~~l~~~~~--~~~~VvVG~D~R~ss~~l~~a~~~gL~s~Gv-~ 85 (465)
T PRK14317 12 GLPASPLFGTDGIRGKVGE---LLTAPLALQVGFWAGQVLRQTAP--GEGPVLIGQDSRNSSDMLAMALAAGLTAAGR-E 85 (465)
T ss_pred CCCcCCeecCCCeeeEeCc---ccCHHHHHHHHHHHHHHHHhccC--CCCcEEEEECCCCCHHHHHHHHHHHHHHCCC-e
Confidence 3567899999999999998 89999999999999999965321 1457999999999999999999999999999 9
Q ss_pred EEEcCCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccC
Q psy1654 108 VFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRD 187 (459)
Q Consensus 108 V~~~~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~ 187 (459)
|+++ |.+|||+++|++++++++|||||||||||++||||||++++|.++++. .+++|++.+.. +.+.+.....
T Consensus 86 V~~~-g~~pTP~~~~av~~~~~~gGI~ITaSHnP~~~nGiK~~~~~G~~i~~~----~~~~Ie~~~~~--~~~~~~~~~~ 158 (465)
T PRK14317 86 VWHL-GLCPTPAVAYLTRKSEAIGGLMISASHNPPEDNGIKFFGADGTKLSPE----LQAQIEAGLRG--ELSSSDNASN 158 (465)
T ss_pred EEEe-cccCcHHHHHHHHhcCCCEEEEEeCCCCCcccCCEEEEcCCCCcCCHH----HHHHHHHHHhc--ccccccchhc
Confidence 9999 999999999999999999999999999999999999999999998754 34555544321 1111100011
Q ss_pred -CCCCCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCC
Q psy1654 188 -QIQPCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFP 266 (459)
Q Consensus 188 -~~~~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p 266 (459)
+.... ..++.+.|+++|++.++ .. ++.+++||||||+||+++.+++.+|++|||++ +. +|+.|||.|++ |
T Consensus 159 ~g~~~~-~~~~~~~Y~~~l~~~id-~~-i~~~~~kVvvD~~nG~~~~~~~~ll~~LG~~v-~~--l~~~~dg~~~~---~ 229 (465)
T PRK14317 159 WGRHYH-RPELLDDYRDALLESLP-DR-VNLQGVKIVLDLAWGAAVACAPEVFKALGAEV-IC--LHDQPDGDRIN---V 229 (465)
T ss_pred CCceEe-cCChHHHHHHHHHHhcC-cc-cccCCCEEEEECCCchHHHHHHHHHHHcCCeE-EE--EecccCCCCCC---C
Confidence 22221 24788999999999887 33 56689999999999999999999999999984 33 59999999975 3
Q ss_pred CCCCchhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEE
Q psy1654 267 NPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLA 346 (459)
Q Consensus 267 ~p~~~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~ 346 (459)
+|. +++++.+.+.|++.+||+|+++||||||+.++| ++| +++++|++++|+++++++... .++ ..||.
T Consensus 230 ~~~-~~~l~~l~~~v~~~~adlGia~DgDgDR~~~vd--~~G--~~i~~d~l~~l~a~~ll~~~~--~~~-----~~VV~ 297 (465)
T PRK14317 230 NCG-STHLEPLQAAVLEHGADMGFAFDGDADRVLAVD--GQG--RVVDGDHILYLWGSHLQEQNQ--LPD-----NLLVA 297 (465)
T ss_pred CCc-hHhHHHHHHHHHhcCCCEEEEECCCCcEEEEEC--CCC--CEEChhHHHHHHHHHHHHhcC--CCC-----CeEEE
Confidence 333 357999999999999999999999999999998 489 789999999999999887421 111 24899
Q ss_pred eccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHh
Q psy1654 347 STVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDS 426 (459)
Q Consensus 347 ~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~ 426 (459)
|+.||.+++++++++|+++++||||+++++++|.+. +++||||+|||++|++|++++|||+++++++|+++.
T Consensus 298 ~v~ss~~~~~~~~~~g~~v~~t~vG~~~i~~~m~~~-----~~~~ggE~sg~~~~~~~~~~~Dgi~a~l~ile~la~--- 369 (465)
T PRK14317 298 TVMSNLGFERAWQQRGGQLERTAVGDQHVHAAMLET-----GAMLGGEQSGHILCHHHGLSGDGLLTALHLATLVHQ--- 369 (465)
T ss_pred eeecchHHHHHHHHcCCeEEEcCCchHHHHHHHHHc-----CcEeeccccceEEEeccccCCcHHHHHHHHHHHHHH---
Confidence 999999999999999999999999999999998753 589999999999999999999999999999999984
Q ss_pred CCCCHHHHHHHHHHhcccc-------cCcccCCCCc
Q psy1654 427 QGKDLHQLLADVYDKGNCI-------TGGFIDPKSK 455 (459)
Q Consensus 427 ~~~~Ls~ll~~lp~~y~~~-------~~~~~~~~~~ 455 (459)
++++|++++++++..|.+. .....|+|.+
T Consensus 370 ~~~~lsel~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 405 (465)
T PRK14317 370 SGVSLAELVDQSFQTYPQKLRNVRVEDRDRRLNWQE 405 (465)
T ss_pred hCCCHHHHHHhHHHhCCceEEEeeccccchhhhhhc
Confidence 8999999999986666522 2234477865
No 11
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=7e-74 Score=594.78 Aligned_cols=375 Identities=19% Similarity=0.223 Sum_probs=319.8
Q ss_pred CcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 32 RLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 32 ~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
|.+||++||||++|+ ++|||+++.++|+|||+++++.. +++|+||||+|.+|++|++++++||+++|+ +|+++
T Consensus 1 ~~~Fgt~GiRG~~~~--~~ltpe~~~~lg~a~a~~l~~~~----~~~VvVg~D~R~ss~~l~~a~~~gL~s~Gv-~V~~~ 73 (443)
T PRK10887 1 RKYFGTDGIRGKVGQ--APITPDFVLKLGWAAGKVLARQG----RPKVLIGKDTRISGYMLESALEAGLAAAGV-DVLLT 73 (443)
T ss_pred CCccCCCccceecCC--CCCCHHHHHHHHHHHHHHHHhCC----CCcEEEEeCCCCCHHHHHHHHHHHHHHCCC-eEEEE
Confidence 578999999999996 24999999999999999997631 357999999999999999999999999999 99999
Q ss_pred CCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccC-CCC
Q psy1654 112 SRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRD-QIQ 190 (459)
Q Consensus 112 ~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~-~~~ 190 (459)
|.+|||+++|+++.++++|||||||||||++||||||++++|.++++. .+++|++.+. +.+.+..... |.+
T Consensus 74 -g~~pTP~~~~a~~~~~~~gGI~ITaShnp~~~ngiK~~~~~G~~i~~~----~~~~ie~~~~---~~~~~~~~~~~g~~ 145 (443)
T PRK10887 74 -GPMPTPAVAYLTRTLRAEAGIVISASHNPYYDNGIKFFSADGTKLPDE----VELAIEAELD---KPLTCVESAELGKA 145 (443)
T ss_pred -CCcChHHHHHHHHHcCCCEEEEEecCCCCcccCeEEEECCCCCCCCHH----HHHHHHHHHh---CcCCccccccCceE
Confidence 999999999999999999999999999999999999999999998754 3444544431 1222111011 222
Q ss_pred CCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC
Q psy1654 191 PCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE 270 (459)
Q Consensus 191 ~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~ 270 (459)
.. ..+..+.|++.|++.++ .. ++.+++|||+||+||+++.+++.+|++|||++ +. +|++|||.||+ +.|.|
T Consensus 146 ~~-~~~~~~~Y~~~l~~~id-~~-i~~~~~kVvvD~~~G~~~~~~~~ll~~lG~~v-~~--~n~~~dg~~~~-~~~~~-- 216 (443)
T PRK10887 146 SR-INDAAGRYIEFCKSTFP-NE-LSLRGLKIVVDCANGATYHIAPNVFRELGAEV-IA--IGCEPNGLNIN-DECGA-- 216 (443)
T ss_pred EE-cCChHHHHHHHHHHhcC-cc-cccCCCEEEEECCCchHHHHHHHHHHHhCCeE-EE--EeccCCCCCCC-CCCCC--
Confidence 21 23578999999999887 22 35679999999999999999999999999985 34 49999999975 23333
Q ss_pred chhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccc
Q psy1654 271 PSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVS 350 (459)
Q Consensus 271 ~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~s 350 (459)
.+++.+.+.|++.++|+|+++||||||+.++| ++| +++++|++++|+++++++..+ .+ + .||.|+.|
T Consensus 217 -~~l~~l~~~v~~~~adlGia~D~DgDRl~~vd--~~G--~~i~~d~l~~l~~~~ll~~~~--~~-----~-~vv~~v~s 283 (443)
T PRK10887 217 -TDPEALQAAVLAEKADLGIAFDGDGDRVIMVD--HLG--NLVDGDQLLYIIARDRLRRGQ--LR-----G-GVVGTLMS 283 (443)
T ss_pred -CCHHHHHHHHHhcCCCeeeEECCCCceEEEEC--CCC--cEeCHHHHHHHHHHHHHHhCC--CC-----C-cEEEEecc
Confidence 57899999999999999999999999999998 589 789999999999999887521 11 2 38999999
Q ss_pred hHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCCC
Q psy1654 351 SKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKD 430 (459)
Q Consensus 351 s~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~ 430 (459)
|.+++++|+++|+++++||||+++++++|.+. +++||||+|||++|++|++++|||+++++++|+|+. ++++
T Consensus 284 s~~~~~~a~~~g~~v~~t~vG~~~i~~~m~~~-----~~~~ggE~sg~~~~~~~~~~~Dgi~a~l~ile~la~---~~~~ 355 (443)
T PRK10887 284 NMGLELALKQLGIPFVRAKVGDRYVLEKLQEK-----GWRLGGENSGHILCLDKTTTGDGIVAALQVLAAMVR---SGMS 355 (443)
T ss_pred chHHHHHHHHcCCcEEEcCCchHHHHHHHHhc-----CcEEEEecccceeccCccccCcHHHHHHHHHHHHHH---hCCC
Confidence 99999999999999999999999999998652 589999999999999999999999999999999984 7899
Q ss_pred HHHHHHHHHHhcccccCcccCC
Q psy1654 431 LHQLLADVYDKGNCITGGFIDP 452 (459)
Q Consensus 431 Ls~ll~~lp~~y~~~~~~~~~~ 452 (459)
|+++++++|. |.+.+..++||
T Consensus 356 Ls~l~~~~~~-~~~~~~~v~~~ 376 (443)
T PRK10887 356 LADLCSGMKL-FPQVLINVRFK 376 (443)
T ss_pred HHHHHhhccc-ccceEEEEEec
Confidence 9999999997 66677799998
No 12
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=7.8e-74 Score=594.65 Aligned_cols=369 Identities=24% Similarity=0.370 Sum_probs=320.5
Q ss_pred ccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCC
Q psy1654 34 KFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSR 113 (459)
Q Consensus 34 ~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g 113 (459)
+|||+||||++|+ +|||+++.++|+|||++++ +++|+||||+|++|++|++++++||+++|+ +|+++ |
T Consensus 1 ~Fgt~giRG~~~~---~lt~~~~~~l~~a~~~~l~-------~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~-~V~~~-g 68 (439)
T cd03087 1 LFGTSGIRGVVGE---ELTPELALKVGKALGTYLG-------GGTVVVGRDTRTSGPMLKNAVIAGLLSAGC-DVIDI-G 68 (439)
T ss_pred CcCcCceeeECCC---CcCHHHHHHHHHHHHhhcc-------CCeEEEEeCCCCCHHHHHHHHHHHHHHCCC-eEEEc-C
Confidence 5999999999998 8999999999999999985 357999999999999999999999999999 99999 9
Q ss_pred CccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccC-CCCCC
Q psy1654 114 VCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRD-QIQPC 192 (459)
Q Consensus 114 ~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~-~~~~~ 192 (459)
.+|||+++|++++++ .|||||||||||++||||||++++|.+++++..++|++.+++. .+.+..... |.+..
T Consensus 69 ~~~tP~~~~~v~~~~-~gGi~ItaShnp~~~ngiK~~~~~G~~i~~~~~~~Ie~~~~~~------~~~~~~~~~~g~~~~ 141 (439)
T cd03087 69 IVPTPALQYAVRKLG-DAGVMITASHNPPEYNGIKLVNPDGTEFSREQEEEIEEIIFSE------RFRRVAWDEVGSVRR 141 (439)
T ss_pred ccChHHHHHHHHhcC-CceEEEEeCCCCHHHCcEEEECCCCCcCCHHHHHHHHHHHhcC------CccccccccCeeEEe
Confidence 999999999999999 9999999999999999999999999999876444554443322 111111111 22222
Q ss_pred CcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCch
Q psy1654 193 PLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPS 272 (459)
Q Consensus 193 ~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~ 272 (459)
..++.+.|++.+.+.++. +. .+++||++||+||+++.+++++|++|||++ +. +|++|||.||+ +.|+|. ++
T Consensus 142 -~~~~~~~Y~~~l~~~~~~-~~--~~~lkIvid~~~G~~~~~~~~~l~~lg~~v-~~--~~~~~d~~f~~-~~p~p~-~~ 212 (439)
T cd03087 142 -EDSAIDEYIEAILDKVDI-DG--GKGLKVVVDCGNGAGSLTTPYLLRELGCKV-IT--LNANPDGFFPG-RPPEPT-PE 212 (439)
T ss_pred -cCccHHHHHHHHHHhcCc-cc--CCCCEEEEECCCCchHHHHHHHHHHcCCEE-EE--ECCcCCCCCCC-CCCCCC-HH
Confidence 234889999999998862 21 579999999999999999999999999985 34 49999999997 458887 58
Q ss_pred hHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccchH
Q psy1654 273 SLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSK 352 (459)
Q Consensus 273 ~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss~ 352 (459)
+++.+.+.+++.++|+|+++||||||++++| ++| +++++|++++|+++++++. + ...||.|+.||+
T Consensus 213 ~l~~l~~~v~~~~adlgia~D~DgDR~~~vd--~~G--~~l~~d~~~~l~a~~ll~~-~---------~~~vv~~v~ss~ 278 (439)
T cd03087 213 NLSELMELVRATGADLGIAHDGDADRAVFVD--EKG--RFIDGDKLLALLAKYLLEE-G---------GGKVVTPVDASM 278 (439)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCCceEEEEC--CCC--CEechHHHHHHHHHHHHhc-C---------CCcEEEeccchH
Confidence 8999999999999999999999999999998 489 6799999999999998874 1 124899999999
Q ss_pred HHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCCCHH
Q psy1654 353 ILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLH 432 (459)
Q Consensus 353 ~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~Ls 432 (459)
+++++|+++|+++++|||||++++++|.+. +++||||+||||+|+++.+++|||+++++++|++++ . ++|+
T Consensus 279 ~l~~~a~~~g~~~~~~~~G~k~i~~~m~~~-----~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~lle~l~~---~-~~l~ 349 (439)
T cd03087 279 LVEDVVEEAGGEVIRTPVGDVHVAEEMIEN-----GAVFGGEPNGGWIFPDHQLCRDGIMTAALLLELLAE---E-KPLS 349 (439)
T ss_pred HHHHHHHHcCCEEEEEecChHHHHHHHHhc-----CCeEEecCCCCEecCCcCCcCCHHHHHHHHHHHHhc---C-CCHH
Confidence 999999999999999999999999998652 589999999999999999999999999999999985 5 9999
Q ss_pred HHHHHHHHhcccccCcccCCCC
Q psy1654 433 QLLADVYDKGNCITGGFIDPKS 454 (459)
Q Consensus 433 ~ll~~lp~~y~~~~~~~~~~~~ 454 (459)
++++++|+ |.+.+..+.|||+
T Consensus 350 ~~~~~~~~-~~~~~~~v~~~~~ 370 (439)
T cd03087 350 ELLDELPK-YPLLREKVECPDE 370 (439)
T ss_pred HHHHhccc-cccccccccCChH
Confidence 99999986 6777778899995
No 13
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=100.00 E-value=2.4e-73 Score=592.04 Aligned_cols=378 Identities=21% Similarity=0.248 Sum_probs=320.1
Q ss_pred CcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 32 RLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 32 ~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
-.+||++||||++|+ +|||+++.++|+|||++++. ++|+||||+|.+|++|++++++||+++|+ +|+++
T Consensus 4 ~~~Fg~~GiRG~~~~---~lt~~~~~~~~~a~a~~l~~-------~~VvVg~D~R~ss~~l~~a~a~gL~s~Gi-~V~~~ 72 (456)
T PRK15414 4 LTCFKAYDIRGKLGE---ELNEDIAWRIGRAYGEFLKP-------KTIVLGGDVRLTSETLKLALAKGLQDAGV-DVLDI 72 (456)
T ss_pred cceecccCcceeeCC---CcCHHHHHHHHHHHHHHhcC-------CeEEEEECCCCChHHHHHHHHHHHHHCCC-eEEEe
Confidence 479999999999998 79999999999999999852 37999999999999999999999999999 99999
Q ss_pred CCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccC-CCC
Q psy1654 112 SRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRD-QIQ 190 (459)
Q Consensus 112 ~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~-~~~ 190 (459)
|.+|||+++|++++++++|||||||||||++|||+|++.++|.+++.. .+++ +|++.+.. .+|.+..... +.+
T Consensus 73 -g~~pTP~~~~av~~~~~~gGI~ITaSHNP~~~NG~Ki~~~~g~~~~~~--~~~~-~i~~~~~~--~~~~~~~~~~~g~~ 146 (456)
T PRK15414 73 -GMSGTEEIYFATFHLGVDGGIEVTASHNPMDYNGMKLVREGARPISGD--TGLR-DVQRLAEA--NDFPPVDETKRGRY 146 (456)
T ss_pred -CCcChHHHHHhhhccCCCeEEEEecCCCCCCCCCEEeecCCCcccCcH--HHHH-HHHHHHhc--CCcccccccCCCcE
Confidence 999999999999999999999999999999999999999988777642 2122 24443221 1222110001 333
Q ss_pred CCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHH---HHHcCCCCeEEeccccccCCCCCCCCCCC
Q psy1654 191 PCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQL---FKLFKFKPLVLVDAQCSPDPEFPTVRFPN 267 (459)
Q Consensus 191 ~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~l---l~~LG~~~~~~v~~~~~pd~~f~~~~~p~ 267 (459)
.. .++.+.|++++++.++ .. +.+++|||+||+||+++.+++.| |++|||++ .++.+++.|||.||+ +.|+
T Consensus 147 ~~--~~~~~~Yi~~l~~~id-~~--~~~~lkVvvD~~~G~~~~~~~~l~~~l~~lG~~v-~v~~~~~~pdg~F~~-~~p~ 219 (456)
T PRK15414 147 QQ--INLRDAYVDHLFGYIN-VK--NLTPLKLVINSGNGAAGPVVDAIEARFKALGAPV-ELIKVHNTPDGNFPN-GIPN 219 (456)
T ss_pred Ee--cCcHHHHHHHHHHhcc-cc--cCCCCEEEEECCCCcchhhHHHHHHHHHhcCCCe-EEEEeecCCCCCCCC-CCCC
Confidence 22 3578999999999876 22 23689999999999999999999 99999964 556779999999999 5799
Q ss_pred CCCchhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEe
Q psy1654 268 PEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLAS 347 (459)
Q Consensus 268 p~~~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~ 347 (459)
|+.+++++.+.+.|++.+||+|+++||||||++++| ++| +++++|++++|+++++++. +++ ..||.+
T Consensus 220 P~~~~~l~~l~~~v~~~~adlGia~DgDaDR~~~vd--e~G--~~l~~d~~~~l~a~~ll~~----~~g-----~~vv~~ 286 (456)
T PRK15414 220 PLLPECRDDTRNAVIKHGADMGIAFDGDFDRCFLFD--EKG--QFIEGYYIVGLLAEAFLEK----NPG-----AKIIHD 286 (456)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECCCcceEEEEC--CCC--CEecHHHHHHHHHHHHHHh----CCC-----CeeccC
Confidence 998889999999999999999999999999999999 589 5699999999999998875 222 136776
Q ss_pred ccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhC
Q psy1654 348 TVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQ 427 (459)
Q Consensus 348 ~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~ 427 (459)
+.+|..++++++++|+++++|||||+||+++|.+. +++||||+|||++|++|.+++|||++++++||+++ .+
T Consensus 287 ~~~s~~l~~~~~~~g~~~~~t~vG~~~i~~~m~~~-----~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~ile~la---~~ 358 (456)
T PRK15414 287 PRLSWNTVDVVTAAGGTPVMSKTGHAFIKERMRKE-----DAIYGGEMSAHHYFRDFAYCDSGMIPWLLVAELVC---LK 358 (456)
T ss_pred chhhhHHHHHHHHcCCEEEEecCcHHHHHHHHHhc-----CCeEEEcccceEEeCCCCCCccHHHHHHHHHHHHH---cc
Confidence 77777999999999999999999999999998653 58999999999999999999999999999999998 48
Q ss_pred CCCHHHHHHHHHHhccc---ccCcccCCCC
Q psy1654 428 GKDLHQLLADVYDKGNC---ITGGFIDPKS 454 (459)
Q Consensus 428 ~~~Ls~ll~~lp~~y~~---~~~~~~~~~~ 454 (459)
+++|+++++++|++|.. ++..+.|||.
T Consensus 359 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T PRK15414 359 GKTLGELVRDRMAAFPASGEINSKLAQPVE 388 (456)
T ss_pred CCCHHHHHHHHHHhcCCCCccccCCCCHHH
Confidence 99999999988887763 3346678874
No 14
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=2e-73 Score=591.12 Aligned_cols=373 Identities=20% Similarity=0.226 Sum_probs=314.3
Q ss_pred cccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcC
Q psy1654 33 LKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVS 112 (459)
Q Consensus 33 ~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~ 112 (459)
.+|||+||||++|+ +|||+++.++|+|||+++++.. ..++|+||||+|.+|++|++++++||+++|+ +|+++
T Consensus 2 ~~Fgt~GiRG~~~~---~lt~~~~~~lg~a~g~~l~~~~---~~~~V~Vg~D~R~ss~~l~~a~~~gL~s~G~-~V~~~- 73 (446)
T PRK14324 2 KLFGTDGVRGKAGE---KLTAFLAMRLAMAAGIYFKKHS---ITNKILVGKDTRRSGYMIENALVSGLTSVGY-NVIQI- 73 (446)
T ss_pred cccCCCCcceecCC---CcCHHHHHHHHHHHHHHHHhCC---CCCeEEEEeCCCcCHHHHHHHHHHHHHHCCC-eEEEe-
Confidence 58999999999998 8999999999999999997631 1247999999999999999999999999999 99999
Q ss_pred CCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhcccccccc---ch---hhcc
Q psy1654 113 RVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIW---NI---DRIR 186 (459)
Q Consensus 113 g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~---~~---~~~~ 186 (459)
|.+|||+++|++++++++|||||||||||++||||||++++|.++++. .+++|++.+.. +++ .+ ...
T Consensus 74 g~~pTP~~~~a~~~~~~~gGI~ITaSHNP~~~nGiK~~~~~G~~i~~~----~~~~Ie~~~~~--~~~~~~~~~~~~~~- 146 (446)
T PRK14324 74 GPMPTPAIAFLTEDMRCDAGIMISASHNPYYDNGIKFFDSYGNKLDEE----EEKEIEEIFFD--EELIQSSQKTGEEI- 146 (446)
T ss_pred cCccHHHHHHHHhhcCCceEEEEEcCCCChhHCCEEEECCCCCCCCHH----HHHHHHHHHhc--cccccccccchhhC-
Confidence 999999999999999999999999999999999999999999998754 34445444321 111 11 111
Q ss_pred CCCCCCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCC
Q psy1654 187 DQIQPCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFP 266 (459)
Q Consensus 187 ~~~~~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p 266 (459)
|.+.. ..++.+.|+++|++.++ .+ +..+++||||||+||+++.+++.+|++|||++ +. +|+.|||.||+ +.|
T Consensus 147 -g~~~~-~~~~~~~Y~~~l~~~i~-~~-~~~~~lkVvvD~~nGa~~~~~~~ll~~lG~~v-~~--i~~~~dg~~~~-~~~ 218 (446)
T PRK14324 147 -GSAKR-IDDVIGRYIVHIKNSFP-KD-LTLKGLRIVLDTANGAAYKVAPTVFSELGADV-IV--INDEPNGFNIN-ENC 218 (446)
T ss_pred -eeeEe-cccHHHHHHHHHHHhcC-Cc-cCCCCCEEEEECCCchHHHHHHHHHHHcCCeE-EE--ECCCCCCCCCC-CCC
Confidence 32221 23678999999999886 23 34579999999999999999999999999984 44 49999999985 233
Q ss_pred CCCCchhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEE
Q psy1654 267 NPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLA 346 (459)
Q Consensus 267 ~p~~~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~ 346 (459)
.| .+++.+++.|++.+||+|+++||||||++++| ++| +++++|++++|+++++++..+ .+ ...||.
T Consensus 219 ~~---~~~e~l~~~v~~~~adlGia~DgDgDR~~vvd--~~G--~~l~~d~~~~l~a~~ll~~~~--~~-----~~~VV~ 284 (446)
T PRK14324 219 GA---LHPENLAQEVKRYRADIGFAFDGDADRLVVVD--EKG--EIVHGDKLLGVLAVYLKEKGA--LK-----SQAIVA 284 (446)
T ss_pred CC---CCHHHHHHHHHhCCCCEEEEECCCCceEEEEC--CCC--CEeCHHHHHHHHHHHHHHhCC--CC-----CCeEEE
Confidence 33 34666788999999999999999999999999 489 789999999999999887521 11 125899
Q ss_pred eccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHh
Q psy1654 347 STVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDS 426 (459)
Q Consensus 347 ~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~ 426 (459)
|+.||++++++++++|+++++|||||++++++|.+. +++||||+|||++|++|.+++|||+++++++|+|+.
T Consensus 285 ~v~ss~~l~~ia~~~g~~v~~t~vG~~~i~~~m~~~-----~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~lle~la~--- 356 (446)
T PRK14324 285 TVMSNLALEEYLKKHGIELKRCNVGDKYVLECMKEN-----GINFGGEQSGHIIFSDYAKTGDGLVSALQVSALMLE--- 356 (446)
T ss_pred EecCChHHHHHHHHcCCeEEEeCChHHHHHHHHHhc-----CCEEEEcCcccEEecCcCCCCcHHHHHHHHHHHHHH---
Confidence 999999999999999999999999999999998652 589999999999999999999999999999999984
Q ss_pred CCCCHHHHHHHHHHhcccccCcccC
Q psy1654 427 QGKDLHQLLADVYDKGNCITGGFID 451 (459)
Q Consensus 427 ~~~~Ls~ll~~lp~~y~~~~~~~~~ 451 (459)
++++|+++++++|. |......+.+
T Consensus 357 ~~~~ls~l~~~~~~-~~~~~~~~~~ 380 (446)
T PRK14324 357 SKKKASEALNPFEL-YPQLLVNLKV 380 (446)
T ss_pred cCCCHHHHHHhhhh-cCceeEEEee
Confidence 89999999999997 6555545544
No 15
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=100.00 E-value=3.1e-73 Score=589.87 Aligned_cols=374 Identities=20% Similarity=0.230 Sum_probs=318.7
Q ss_pred cCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy1654 35 FGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRV 114 (459)
Q Consensus 35 Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~ 114 (459)
||++||||++|+ +|||+++.++|+|||++++++. +++|+||||+|++|++|++++++||+++|+ +|+++ |.
T Consensus 1 f~~~giRG~~~~---~lt~~~v~~l~~a~~~~l~~~~----~~~VvVg~D~R~~s~~l~~a~~~gL~s~G~-~V~~l-g~ 71 (445)
T PRK09542 1 IKAYDVRGVVGE---QIDEDLVRDVGAAFARLMRAEG----ATTVVIGHDMRDSSPELAAAFAEGVTAQGL-DVVRI-GL 71 (445)
T ss_pred CCccccccccCC---CcCHHHHHHHHHHHHHHHHHcC----CCeEEEEeCCCCCHHHHHHHHHHHHHHCCC-EEEEe-CC
Confidence 899999999998 8999999999999999997532 467999999999999999999999999999 99999 99
Q ss_pred ccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccCCCCCCCc
Q psy1654 115 CPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQIQPCPL 194 (459)
Q Consensus 115 ~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~~~~~~~~ 194 (459)
+|||+++|+++++++ +|+||||||||++|||+|++.+.|.++.. +.++++ +++.+......+.. .. +.+. .
T Consensus 72 ~pTP~~~~av~~~~~-~Gi~iTaSHNP~~~nG~Ki~~~~~~~~~~--~~~i~~-i~~~~~~~~~~~~~-~~--g~~~--~ 142 (445)
T PRK09542 72 ASTDQLYFASGLLDC-PGAMFTASHNPAAYNGIKLCRAGAKPVGQ--DTGLAA-IRDDLIAGVPAYDG-PP--GTVT--E 142 (445)
T ss_pred CCCHHHHheecccCC-CEEEEcCCCCCCccCcEEEecCCCcccCc--hhHHHH-HHHHHhcccccccC-CC--Ccee--c
Confidence 999999999999998 59999999999999999998887766643 222333 22222110001111 11 3232 2
Q ss_pred chHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCchhH
Q psy1654 195 DSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSL 274 (459)
Q Consensus 195 ~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l 274 (459)
.++.+.|+++|++.++ ... .+++||||||+||+++.+++.+|++|||++ +.+|++|||.||+ +.|+|+.++++
T Consensus 143 ~~~~~~Y~~~l~~~i~-~~~--i~~lkVvvd~~~Ga~~~~~~~ll~~lg~~v---v~~~~~~d~~Fp~-~~p~P~~~~~l 215 (445)
T PRK09542 143 RDVLADYAAFLRSLVD-LSG--IRPLKVAVDAGNGMGGHTVPAVLGGLPITL---LPLYFELDGTFPN-HEANPLDPANL 215 (445)
T ss_pred cChHHHHHHHHHHhcc-ccc--CCCCEEEEECCCCchhHHHHHHHHhCCCEE---EEEecCcCCCCCC-CCcCCCCHHHH
Confidence 4788999999999887 232 368999999999999999999999999984 3459999999998 57999878899
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccchHHH
Q psy1654 275 DLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKIL 354 (459)
Q Consensus 275 ~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss~~l 354 (459)
+.+.+.|++.+||+|+++||||||+.++| ++| +++++|++++|+++++++. +++ ..||.|+.||+++
T Consensus 216 ~~l~~~v~~~~adlGia~DgD~DR~~ivd--~~G--~~l~~d~~~~l~~~~~l~~----~~~-----~~vv~~v~ss~~~ 282 (445)
T PRK09542 216 VDLQAFVRETGADIGLAFDGDADRCFVVD--ERG--QPVSPSAVTALVAARELAR----EPG-----ATIIHNLITSRAV 282 (445)
T ss_pred HHHHHHHHHcCCCEEEEECCCCceEEEEC--CCC--CCccHHHHHHHHHHHHHHH----CCC-----CeEEEeeccchhH
Confidence 99999999999999999999999999999 489 5699999999999988875 222 2589999999999
Q ss_pred HHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCCCHHHH
Q psy1654 355 HTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQL 434 (459)
Q Consensus 355 ~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~Ls~l 434 (459)
+++|+++|+++++|||||++++++|.+. +++||||+||||+|+++.+++|||+++++++|+++. ++++|+++
T Consensus 283 ~~~a~~~g~~~~~t~vG~~~i~~~m~~~-----~~~~ggE~sgg~~f~~~~~~~Dgi~a~~~lle~l~~---~~~~l~~l 354 (445)
T PRK09542 283 PELVAERGGTPVRTRVGHSFIKALMAET-----GAIFGGEHSAHYYFRDFWGADSGMLAALHVLAALGE---QDRPLSEL 354 (445)
T ss_pred HHHHHHcCCeEEEecCcHHHHHHHHHHh-----CCcEEEeeeccEEecCcCCCCcHHHHHHHHHHHHHh---cCCCHHHH
Confidence 9999999999999999999999998652 579999999999999999999999999999999984 88999999
Q ss_pred HHHHHHhcccccCcccCCCCcc
Q psy1654 435 LADVYDKGNCITGGFIDPKSKR 456 (459)
Q Consensus 435 l~~lp~~y~~~~~~~~~~~~~~ 456 (459)
++++|. |. .+..+.|||+..
T Consensus 355 ~~~~~~-~~-~~~~~~~~~~~~ 374 (445)
T PRK09542 355 MADYQR-YA-ASGEINSTVADA 374 (445)
T ss_pred HHhhhh-cC-cccceeecCCCH
Confidence 999876 55 777889999653
No 16
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=6e-73 Score=586.95 Aligned_cols=372 Identities=22% Similarity=0.268 Sum_probs=314.7
Q ss_pred ccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCC
Q psy1654 34 KFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSR 113 (459)
Q Consensus 34 ~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g 113 (459)
+||++||||++++ +|||+++.++|+|||++++++.. +++|+||||+|++|++|++++++||+++|+ +|+++ |
T Consensus 1 ~Fg~~giRG~~~~---~lt~e~~~~lg~a~~~~l~~~~~---~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~-~V~~~-g 72 (434)
T cd05802 1 LFGTDGIRGVANE---PLTPELALKLGRAAGKVLGKGGG---RPKVLIGKDTRISGYMLESALAAGLTSAGV-DVLLL-G 72 (434)
T ss_pred CCCCCccceECCC---CCCHHHHHHHHHHHHHHHHhcCC---CCeEEEEECCCCCHHHHHHHHHHHHHHCCC-cEEEE-c
Confidence 6999999999998 89999999999999999975321 367999999999999999999999999999 99999 9
Q ss_pred CccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccC-CCCCC
Q psy1654 114 VCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRD-QIQPC 192 (459)
Q Consensus 114 ~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~-~~~~~ 192 (459)
.+|||+++|++++++++|||||||||||++||||||++++|.++++. .+++|++.+.. +.+.+..... |.+..
T Consensus 73 ~~pTP~~~~av~~~~~~gGI~ITaSHnp~~~nGiK~~~~~G~~i~~~----~~~~i~~~~~~--~~~~~~~~~~~g~~~~ 146 (434)
T cd05802 73 VIPTPAVAYLTRKLRADAGVVISASHNPFEDNGIKFFSSDGYKLPDE----VEEEIEALIDK--ELELPPTGEKIGRVYR 146 (434)
T ss_pred ccchHHHHHHHHHhCCCeEEEEEecCCchhhCCEEEECCCCCcCCHH----HHHHHHHHHhC--ccccccccccCeeEEE
Confidence 99999999999999999999999999999999999999999998754 34445444321 1221101111 32222
Q ss_pred CcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCch
Q psy1654 193 PLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPS 272 (459)
Q Consensus 193 ~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~ 272 (459)
..++.+.|++.|.+.++. .. .+++||||||+||+++.+++++|++|||++ + .+|++|||.||+. .|.| +
T Consensus 147 -~~~~~~~Y~~~l~~~~~~-~~--~~~lkVvvD~~nG~~~~~~~~ll~~lg~~v-~--~in~~~dg~~~~~-~~~~---~ 215 (434)
T cd05802 147 -IDDARGRYIEFLKSTFPK-DL--LSGLKIVLDCANGAAYKVAPEVFRELGAEV-I--VINNAPDGLNINV-NCGS---T 215 (434)
T ss_pred -ccchHHHHHHHHHHhcCc-cc--cCCCEEEEECCCchHHHHHHHHHHHcCCeE-E--EecCCCCCCCCCC-CCCc---c
Confidence 236789999999998873 22 468999999999999999999999999984 3 3599999999862 2333 4
Q ss_pred hHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccchH
Q psy1654 273 SLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSK 352 (459)
Q Consensus 273 ~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss~ 352 (459)
+++.+.+.|++.++|+|+++||||||++++| ++| +++++|++++|+++++++..+ .++ ..||.|+.||+
T Consensus 216 ~~~~l~~~v~~~~adlGia~DgDgDR~~~vd--~~G--~~i~~d~~~~l~a~~l~~~~~--~~~-----~~vv~~v~ss~ 284 (434)
T cd05802 216 HPESLQKAVLENGADLGIAFDGDADRVIAVD--EKG--NIVDGDQILAICARDLKERGR--LKG-----NTVVGTVMSNL 284 (434)
T ss_pred CHHHHHHHHHhcCCCEEEEEcCCCceEEEEC--CCC--CEeCHHHHHHHHHHHHHHhCC--CCC-----CeEEEecCCcH
Confidence 6888999999999999999999999999998 489 789999999999999887521 111 25999999999
Q ss_pred HHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCCCHH
Q psy1654 353 ILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLH 432 (459)
Q Consensus 353 ~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~Ls 432 (459)
+++++++++|+++++||||+++++++|.+. ++++|||+|||++|++|.+++|||+++++++|+|+. ++++|+
T Consensus 285 ~~~~~~~~~g~~v~~~~~G~~~i~~~~~~~-----~~~~ggE~sG~~~f~~~~~~~Dgi~a~l~lle~la~---~~~~ls 356 (434)
T cd05802 285 GLEKALKELGIKLVRTKVGDRYVLEEMLKH-----GANLGGEQSGHIIFLDHSTTGDGLLTALQLLAIMKR---SGKSLS 356 (434)
T ss_pred HHHHHHHHcCCeEEEEcChHHHHHHHHHhc-----CCEEEEecCCCEEecCcCCCCcHHHHHHHHHHHHHH---hCCCHH
Confidence 999999999999999999999999998652 589999999999999999999999999999999984 899999
Q ss_pred HHHHHHHHhcccccCccc
Q psy1654 433 QLLADVYDKGNCITGGFI 450 (459)
Q Consensus 433 ~ll~~lp~~y~~~~~~~~ 450 (459)
+++++||. |.+.+..++
T Consensus 357 ~l~~~l~~-~~~~~~~v~ 373 (434)
T cd05802 357 ELASDMKL-YPQVLVNVR 373 (434)
T ss_pred HHHhhccc-cCeeeEEEE
Confidence 99999986 555555553
No 17
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.8e-73 Score=588.64 Aligned_cols=381 Identities=28% Similarity=0.383 Sum_probs=324.6
Q ss_pred hcCCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEE
Q psy1654 29 FLKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRV 108 (459)
Q Consensus 29 ~~~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V 108 (459)
+..+.+|||+||||+++. +|||+++.++|+|+|+++.+.. .++|+||||+|.+|++|++++++||+++|+ +|
T Consensus 4 ~~~~~~FGT~GiRG~~~~---~lt~~~~~~~g~a~~~~l~~~~----~~~VvVG~D~R~ss~~~~~a~~~gl~~~G~-~v 75 (464)
T COG1109 4 FMKKLLFGTDGIRGVAGE---ELTPEFALKLGRALGSVLRKKG----APKVVVGRDTRLSSEMLAAALAAGLTSAGI-DV 75 (464)
T ss_pred ccccceECCCccccccCC---CcCHHHHHHHHHHHHHHHhhcC----CCeEEEEecCCCCHHHHHHHHHHHHHHCCC-eE
Confidence 455689999999999995 9999999999999999998611 368999999999999999999999999999 99
Q ss_pred EEcCCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhcc-C
Q psy1654 109 FLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIR-D 187 (459)
Q Consensus 109 ~~~~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~-~ 187 (459)
+++ |.+|||+++|+++++++++||||||||||++|||||+++++|.+++++.++.|++.+.+.. .+...... .
T Consensus 76 ~~~-g~~pTP~~~f~~~~~~~~~gvmITASHNP~~yNGiK~~~~~G~~i~~~~e~~Ie~~~~~~~-----~~~~~~~~~~ 149 (464)
T COG1109 76 YDL-GLVPTPAVAFATRKLGADAGVMITASHNPPEYNGIKFFGSDGGKISDDIEEEIEAILAEEV-----DLPRPSWGEL 149 (464)
T ss_pred EEe-CCCCCHHHHHHHHhcCCCeEEEEecCCCCchhCcEEEEcCCCCcCChHHHHHHHHHHhccc-----cccccccccC
Confidence 999 8999999999999999999999999999999999999999999998775555544433321 11111000 1
Q ss_pred CCCCCCcch-HHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCC
Q psy1654 188 QIQPCPLDS-VLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFP 266 (459)
Q Consensus 188 ~~~~~~~~~-~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p 266 (459)
+.+.. .. ..+.|++++.+.++. + +..+++|||+||+||+++.+++++|++|||++ +.+++.|||.||+.+ |
T Consensus 150 g~~~~--~~~~~~~Y~~~i~~~~~~-~-~~~~~lkVv~d~~nGaa~~~~~~ll~~lG~~v---v~~~~~pDg~fp~~~-p 221 (464)
T COG1109 150 GRLKR--IPDALDRYIEFIKSLVDV-D-LKLRGLKVVVDCANGAAGLVAPRLLKELGAEV---VSINCDPDGLFPNIN-P 221 (464)
T ss_pred CceeE--cchhHHHHHHHHHHhccc-c-cccCCcEEEEECCCCchhHHHHHHHHHcCCEE---EEecCCCCCCCCCCC-C
Confidence 33332 23 789999999999883 3 56778999999999999999999999999874 456999999999965 9
Q ss_pred CCCCchhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEE
Q psy1654 267 NPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLA 346 (459)
Q Consensus 267 ~p~~~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~ 346 (459)
+|+.+..+ .+.+.+++.++|+|+++||||||++++|+ +| ++++||++++|++.++++..+ . . .||.
T Consensus 222 ~p~~~~~~-~l~~~v~~~~aDlgia~DgDaDR~~~vd~--~G--~~~~Gd~i~~lla~~l~~~~~--~------~-~vV~ 287 (464)
T COG1109 222 NPGETELL-DLAKAVKEHGADLGIAFDGDADRLIVVDE--RG--NFVDGDQILALLAKYLLEKGK--L------P-TVVT 287 (464)
T ss_pred CCCCccHH-HHHHHHHhcCCCEEEEecCCCceEEEEcC--CC--CEeCccHHHHHHHHHHHhcCC--C------C-eEEE
Confidence 99986555 88888888899999999999999999995 89 789999999999999987522 1 1 5999
Q ss_pred eccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHh
Q psy1654 347 STVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDS 426 (459)
Q Consensus 347 ~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~ 426 (459)
|+.||..++.+++.+|+++++|+||++||+++|++. +++||||+|||++|+.+.+++||+++++++++++++
T Consensus 288 tv~ss~~~~~i~~~~g~~~~~t~vG~~~i~~~~~~~-----~~~~g~E~sg~~~~~~~~~~~Dgi~aal~ilel~~~--- 359 (464)
T COG1109 288 TVMSSLALEKIAKKLGGKVVRTKVGDKYIAEKMREN-----GAVFGGEESGHIIFPDHVRTGDGLLAALLVLELLAE--- 359 (464)
T ss_pred ecccchhHHHHHHHcCCeEEEecCchHHHHHHHHhc-----CCeEEEcccCCEEECCCCcCCcHHHHHHHHHHHHHH---
Confidence 999999999999999999999999999999998764 459999999999999999999999999999999985
Q ss_pred CCCCHHHHHHH-HHHhcccccCcccCCC
Q psy1654 427 QGKDLHQLLAD-VYDKGNCITGGFIDPK 453 (459)
Q Consensus 427 ~~~~Ls~ll~~-lp~~y~~~~~~~~~~~ 453 (459)
.+++|++++.. +|..|+.....+.|+-
T Consensus 360 ~~~~lsel~~~~~~~~~~~~~~~~~~~~ 387 (464)
T COG1109 360 SGKSLSELLAELLPKYPQSVEINVRVTD 387 (464)
T ss_pred hCCCHHHHHHhhccccCCcceEeEEEcc
Confidence 67799999999 8876554444555543
No 18
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=100.00 E-value=1.4e-72 Score=594.58 Aligned_cols=395 Identities=22% Similarity=0.227 Sum_probs=323.5
Q ss_pred CCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEE
Q psy1654 31 KRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFL 110 (459)
Q Consensus 31 ~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~ 110 (459)
+-.+|||+||||+++. ++||+++.++|+|++.++.+... ++++|+||||+|.+|++|++++++||+++|+ +|++
T Consensus 9 ~~~~Fgt~giRG~~~~---~l~~~~~~~~~~a~~~~~~~~~~--~~~~VvVG~D~R~~S~~~a~~~a~~L~~~G~-~V~~ 82 (548)
T cd03085 9 EGQKPGTSGLRKKVKV---FQQPNYLENFVQSIFNALPPEKL--KGATLVVGGDGRYYNKEAIQIIIKIAAANGV-GKVV 82 (548)
T ss_pred CCCCCCcccccEeecc---ccCHHHHHHHHHHHHHHHHhccC--CCCeEEEEECCCcChHHHHHHHHHHHHHCCC-eEEE
Confidence 3479999999999986 79999999999988666644210 1236999999999999999999999999999 9999
Q ss_pred cC--CCccchhHHHHHHHhcCCeEEEEeCCCCC---CCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccch---
Q psy1654 111 VS--RVCPTPIIAYSIRALNLALGIMITASHNP---KEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNI--- 182 (459)
Q Consensus 111 ~~--g~~ptP~~~~av~~~~~~gGi~ITaShnp---~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~--- 182 (459)
++ |.+|||+++|++++++++||||||||||| ++||||||++++|.+++++.+.+|++.|...-.....++.+
T Consensus 83 ~~~~G~~pTP~l~fav~~~~a~gGImITASHNP~~~~eyNGiK~~~~~G~~i~~~~~~~I~~~i~~ie~~~~~~~~~~~~ 162 (548)
T cd03085 83 VGQNGLLSTPAVSAVIRKRKATGGIILTASHNPGGPEGDFGIKYNTSNGGPAPESVTDKIYEITKKITEYKIADDPDVDL 162 (548)
T ss_pred eCCCCccCchHHHHHHHhcCCCeEEEEecCCCCCCCCcCCcEEEecCCCCcCCcHHHHHHHHHHHhccccccccccccCh
Confidence 83 79999999999999999999999999999 79999999999999998876556654433211000111111
Q ss_pred hhccCCCC-------CCCcchHHHHHHHHHHhcccccCccC----CCCceEEEeCCCCCCHHHHHHHHH-HcCCCCeEEe
Q psy1654 183 DRIRDQIQ-------PCPLDSVLEKYGQSVLDGAYDLGLNE----KSQVVITYSAMHGVGYPYVNQLFK-LFKFKPLVLV 250 (459)
Q Consensus 183 ~~~~~~~~-------~~~~~~~~~~Y~~~l~~~~~~~~~~~----~~~~kVvvD~~~G~~~~~~~~ll~-~LG~~~~~~v 250 (459)
... +.+ .....+..+.|++.|++.++ .+.++ .+++|||+||+||+++.+++.+|+ +|||+++ +
T Consensus 163 ~~~--g~i~~~~~~~~~~~~d~~~~Yi~~l~~~v~-~~~i~~~~~~~~lkVVvD~~nGag~~~~~~lL~~~LG~~~v--~ 237 (548)
T cd03085 163 SKI--GVTKFGGKPFTVEVIDSVEDYVELMKEIFD-FDAIKKLLSRKGFKVRFDAMHGVTGPYAKKIFVEELGAPES--S 237 (548)
T ss_pred hhc--CceeecccCCceEEecCHHHHHHHHHhhhC-HHHHhhhcccCCCEEEEeCCcchhHHHHHHHHHHhcCCCce--E
Confidence 111 110 11124678999999998876 33334 368999999999999999999996 8999852 2
Q ss_pred ccccccCCCCCCCCCCCCCCchhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHh
Q psy1654 251 DAQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRL 330 (459)
Q Consensus 251 ~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~ 330 (459)
.+|++|||.||++ .|+|+ +.++..+.+.|++.+||+|+++||||||++++| + | +++.+|+++++++.++++..
T Consensus 238 ~i~~~pDg~Fp~~-~P~P~-~~~l~~L~~~V~~~~ADlGia~DgDaDRl~vvd--~-G--~~i~~d~~lall~~~ll~~~ 310 (548)
T cd03085 238 VVNCTPLPDFGGG-HPDPN-LTYAKDLVELMKSGEPDFGAASDGDGDRNMILG--K-G--FFVTPSDSVAVIAANAKLIP 310 (548)
T ss_pred EEeCeeCCCCCCC-CCCCc-HHHHHHHHHHHhccCCCEEEEECCCCCceEEEe--c-C--EEecCCHHHHHHHHHHHHhh
Confidence 3699999999994 79999 689999999999999999999999999999999 4 8 78999999999998887531
Q ss_pred hhcCCCCCCCCceEEEeccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcH
Q psy1654 331 KSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDG 410 (459)
Q Consensus 331 ~~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dg 410 (459)
..+.++ ...||.|++||.+++++|+++|++++||||||+||.++|.+. +++||||||||++ +.+.+++||
T Consensus 311 ~~~~~~----~~~VV~tv~sS~~le~ia~~~G~~v~~t~vG~k~I~~~m~~~-----~~~~GgEeSgg~~-~~~~~~kDG 380 (548)
T cd03085 311 YFYKGG----LKGVARSMPTSGALDRVAKKLGIPLFETPTGWKFFGNLMDAG-----KLSLCGEESFGTG-SDHIREKDG 380 (548)
T ss_pred hhhhcC----CcEEEEeCccHHHHHHHHHHcCCcEEEcCchHHHHHHHHhcC-----CceEEEeccCCcc-CCCccCCcH
Confidence 000111 125999999999999999999999999999999999998652 5789999999986 889999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccccc----CcccCCCCcc
Q psy1654 411 VTAAVRMAELVAYLDSQGKDLHQLLADVYDKGNCIT----GGFIDPKSKR 456 (459)
Q Consensus 411 i~a~l~ile~la~~~~~~~~Ls~ll~~lp~~y~~~~----~~~~~~~~~~ 456 (459)
|+++++++|++++ ++++|++++++||++||+++ ..+.|||.+.
T Consensus 381 i~aal~llella~---~g~tLsell~~i~~~~G~~~~~~~~~~~~~~~~k 427 (548)
T cd03085 381 LWAVLAWLSILAH---RNVSVEDIVKEHWQKYGRNFYTRYDYEEVDSEAA 427 (548)
T ss_pred HHHHHHHHHHHHH---HCcCHHHHHHHHHHHhCcceeecccccCCCHHHH
Confidence 9999999999995 78999999999999998665 4455888654
No 19
>PLN02371 phosphoglucosamine mutase family protein
Probab=100.00 E-value=1.7e-72 Score=599.16 Aligned_cols=394 Identities=21% Similarity=0.258 Sum_probs=326.0
Q ss_pred cccCCCCcceecCCCCC----CCCHHHHHHHHHHHHHHHHhhCCC--CCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCc
Q psy1654 33 LKFGTAGIRGPMGVGFS----QMNDVVIIQTGQGILSCAEKHIPN--FKESGIIVGYDGRHNSKRFAELTASVFLNGGVK 106 (459)
Q Consensus 33 ~~Fgt~GiRG~~~~~~~----~ln~~~v~~ig~A~g~~l~~~~~~--~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~ 106 (459)
.+|+++||||+++.|.+ +|||+++.++|+|||++|.+..+. ...++|+||||+|.+|++|++++++||+++|+
T Consensus 66 ~lf~~~giRGv~~~g~~g~~v~lTpe~v~~ig~A~a~~l~~~~~~~~~~~~~VvVG~D~R~sS~~l~~a~a~gL~s~Gi- 144 (583)
T PLN02371 66 KLQNGSDIRGVAVEGVEGEPVTLTPPAVEAIGAAFAEWLLEKKKADGSGELRVSVGRDPRISGPRLADAVFAGLASAGL- 144 (583)
T ss_pred HhhhhcCcceEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccccCCCCeEEEEeCCCCChHHHHHHHHHHHHHCCC-
Confidence 57889999999985432 799999999999999999764210 01247999999999999999999999999999
Q ss_pred EEEEcCCCccchhHHHHHHHh--cCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhh
Q psy1654 107 RVFLVSRVCPTPIIAYSIRAL--NLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDR 184 (459)
Q Consensus 107 ~V~~~~g~~ptP~~~~av~~~--~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~ 184 (459)
+|+++ |.+|||+++|+++.+ ++++||||||||||++||||||++++|.+++++ ++++|++.+... ..|.+..
T Consensus 145 ~V~~~-g~~pTP~~~~av~~~~~~~~gGImITASHNP~~~NGiK~~~~~G~~~~~~----~~~~ie~~~~~~-~e~~~~~ 218 (583)
T PLN02371 145 DVVDM-GLATTPAMFMSTLTEREDYDAPIMITASHLPYNRNGLKFFTKDGGLGKPD----IKDILERAARIY-KEWSDEG 218 (583)
T ss_pred EEEEe-cccCchHHHHHHHhccCCCceEEEEeCCCCCCCCCCEEEeCCCCCCCchH----HHHHHHHHHhhc-ccccccc
Confidence 99999 999999999999966 889999999999999999999999999988754 344444432210 0111100
Q ss_pred c-----cC-CCCCCCcchHHHHHHHHHHhcccccCc-------cCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEec
Q psy1654 185 I-----RD-QIQPCPLDSVLEKYGQSVLDGAYDLGL-------NEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVD 251 (459)
Q Consensus 185 ~-----~~-~~~~~~~~~~~~~Y~~~l~~~~~~~~~-------~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~ 251 (459)
. .. +.+. ..++.+.|+++|++.++ ... .+.+++||||||+||+++.+++.+|++|||++ + +.
T Consensus 219 ~~~~~~~~~g~i~--~~d~~~~Y~~~l~~~i~-~~~~~~~~~~~~~~~lkIvvD~~nGag~~~~~~lL~~LG~~v-~-~~ 293 (583)
T PLN02371 219 LLKSSSGASSVVC--RVDFMSTYAKHLRDAIK-EGVGHPTNYETPLEGFKIVVDAGNGAGGFFAEKVLEPLGADT-S-GS 293 (583)
T ss_pred cchhhhccCCcEE--EechHHHHHHHHHHHHH-HhhccccccccCCCCCEEEEeCCCCchHHHHHHHHHHcCCCe-E-ee
Confidence 0 11 2222 24778999999998876 222 24578999999999999999999999999985 3 46
Q ss_pred cccccCCCCCCCCCCCCCCchhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhh
Q psy1654 252 AQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLK 331 (459)
Q Consensus 252 ~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~ 331 (459)
++++|||.||++ .|+|+.+++++.+.+.|++.+||+|+++||||||++++| ++| +++++|++++|+++++++.
T Consensus 294 ~~~~pDg~Fp~~-~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDaDR~~vvD--~~G--~~i~gd~l~aLla~~ll~~-- 366 (583)
T PLN02371 294 LFLEPDGMFPNH-IPNPEDKAAMSATTQAVLANKADLGIIFDTDVDRSAVVD--SSG--REINRNRLIALMSAIVLEE-- 366 (583)
T ss_pred ccCCCCCCCCCc-CCCCCCHHHHHHHHHHHHhcCCCEEEEECCCccceeEEC--CCC--EEECHHHHHHHHHHHHHHh--
Confidence 799999999994 799998899999999999999999999999999999998 589 7899999999999999875
Q ss_pred hcCCCCCCCCceEEEeccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHH
Q psy1654 332 SKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGV 411 (459)
Q Consensus 332 ~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi 411 (459)
+++ ..||+|++||++++++|+++|+++++|||||+|++++|.+....+..++||||+|||++|+++++.+||+
T Consensus 367 --~~g-----~~VV~~v~sS~~l~~ia~~~G~~v~rt~vG~k~v~~~m~~~~~~~~~~~~ggEeSG~~~~~~~~~~dDg~ 439 (583)
T PLN02371 367 --HPG-----TTIVTDSVTSDGLTTFIEKKGGKHHRFKRGYKNVIDKGVRLNSDGEETHLMIETSGHGALKENHFLDDGA 439 (583)
T ss_pred --CCC-----CEEEEecccchhHHHHHHHcCCeEEEecCchHHHHHHHHHhhccCCceEEEEcccCeEEECCCCCCCcHH
Confidence 232 2589999999999999999999999999999999999987543333589999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh--CCCCHHHHHHHHHHhccc--ccCcccCC
Q psy1654 412 TAAVRMAELVAYLDS--QGKDLHQLLADVYDKGNC--ITGGFIDP 452 (459)
Q Consensus 412 ~a~l~ile~la~~~~--~~~~Ls~ll~~lp~~y~~--~~~~~~~~ 452 (459)
++++++|++++.... .+++|+++++++|+.|.. .+..++|+
T Consensus 440 ~a~~~ile~la~~~~~~~~~~Lsel~~~lp~~~~~~~~r~~v~~~ 484 (583)
T PLN02371 440 YLAVKIIIELVRMRAAGAGGGLGDLIEDLEEPLEAVELRLKILDE 484 (583)
T ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHhchhccCCceeeecCCcc
Confidence 999999999986332 267799999999976553 33455577
No 20
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.6e-72 Score=584.42 Aligned_cols=370 Identities=21% Similarity=0.240 Sum_probs=311.6
Q ss_pred CCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEE
Q psy1654 31 KRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFL 110 (459)
Q Consensus 31 ~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~ 110 (459)
++.+|||+||||++|. .+|||+++.++|+|||++++++.. +++|+||||+|.+|++|++++++||+++|+ +|++
T Consensus 2 ~~~~Fgt~giRG~~~~--~~lt~e~~~~lg~a~g~~l~~~~~---~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~-~V~~ 75 (440)
T PRK14323 2 ERRYFGTDGVRGVAGE--PPLTPEFVLKLGQAAGEVFKRHGP---RPVVLLGKDTRQSGDMLEAALAAGLTSRGV-RVEH 75 (440)
T ss_pred CccEeCCCCeeeecCC--CCCCHHHHHHHHHHHHHHHHhcCC---CCeEEEEeCCCccHHHHHHHHHHHHHHCCC-EEEE
Confidence 5789999999999994 159999999999999999976421 356999999999999999999999999999 9999
Q ss_pred cCCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccC-CC
Q psy1654 111 VSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRD-QI 189 (459)
Q Consensus 111 ~~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~-~~ 189 (459)
+ |.+|||+++|++++++++|||||||||||++||||||++++|.+++.... ++|++.+... +++.+..... +.
T Consensus 76 ~-g~~pTP~~~~av~~~~~~gGI~ITaSHnP~~~nGiK~~~~~G~~i~~~~~----~~ie~~~~~~-~~~~~~~~~~~g~ 149 (440)
T PRK14323 76 L-GVLPTPGVSYLTRHLGATAGVVISASHNPYQDNGIKFFGADGEKLPDAAE----LEIEALLDEV-PELAEVTGAGIGS 149 (440)
T ss_pred e-cccChHHHHHHHHHhCCCEEEEEecCCCCCccCCEEEeCCCCCcCCHHHH----HHHHHHHhcc-cccCcccccCcee
Confidence 9 99999999999999999999999999999999999999999999875433 3444432210 1222110011 22
Q ss_pred CCCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCC
Q psy1654 190 QPCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPE 269 (459)
Q Consensus 190 ~~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~ 269 (459)
+.. ..++.+.|++.+.+.++ ..+++|||+||+||+++.+++++|++|||++ +. +|++||+.||+. .|.
T Consensus 150 ~~~-~~~~~~~Y~~~l~~~~~-----~~~~~kVvvD~~~G~~~~~~~~ll~~lG~~v-~~--l~~~~dg~~~~~-~~~-- 217 (440)
T PRK14323 150 VSD-FTEAERLYLDFLLSHAP-----DLSGLKVALDCANGAAYRLAPKVFQAAGADV-FA--LFNTPDGRNINR-GCG-- 217 (440)
T ss_pred EEE-hhhHHHHHHHHHHHhcc-----cccCCEEEEECCCchHHHHHHHHHHHcCCcE-EE--EeccCCCCcCCC-CCC--
Confidence 221 23678999999988764 2468999999999999999999999999985 33 599999999752 222
Q ss_pred CchhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEecc
Q psy1654 270 EPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTV 349 (459)
Q Consensus 270 ~~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ 349 (459)
+++++.+.+.|++.++|+|+++||||||++++| ++| +++++|++++|++++. + + . .||.|+.
T Consensus 218 -~~~l~~l~~~v~~~~adlGia~DgD~DR~~~vD--~~G--~~i~~d~~~~l~a~~~----~---~-----~-~vV~~v~ 279 (440)
T PRK14323 218 -STHPEALQRFVVEGGLDLGVAFDGDADRALFVD--RRG--RLFHGDHMLYLNALAR----G---E-----K-AVVGTVM 279 (440)
T ss_pred -CCCHHHHHHHHhccCCCEEEEeCCCcceeEEEC--CCC--cEeCHHHHHHHHHHHh----c---C-----C-cEEEEeC
Confidence 357888999999999999999999999999999 489 7899999999998652 1 1 1 4899999
Q ss_pred chHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCC
Q psy1654 350 SSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGK 429 (459)
Q Consensus 350 ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~ 429 (459)
||.+++++++++|+++++||||+++++++|.+. +++||||+|||++|++|.+++|||+++++++|+++. +++
T Consensus 280 ss~~~~~~~~~~g~~v~~t~vG~~~i~~~m~~~-----~~~~ggE~sG~~~f~~~~~~~Dgi~a~l~~le~la~---~~~ 351 (440)
T PRK14323 280 SNMALEVKLREAGIAFHRTAVGDRYVHEKLHAK-----GLTLGGEQSGHVLFLDHAPTGDGVLTALLTLAAMKA---LGT 351 (440)
T ss_pred CChHHHHHHHHcCCeEEEeCChHHHHHHHHHhc-----CCeEEEcCcccEEeCCCCCCCcHHHHHHHHHHHHHH---hCC
Confidence 999999999999999999999999999998652 589999999999999999999999999999999984 799
Q ss_pred CHHHHHHHHHHhcccccCcccC
Q psy1654 430 DLHQLLADVYDKGNCITGGFID 451 (459)
Q Consensus 430 ~Ls~ll~~lp~~y~~~~~~~~~ 451 (459)
+|+++++++|. |.+.+..+.|
T Consensus 352 ~ls~l~~~~~~-~~~~~~~v~~ 372 (440)
T PRK14323 352 DLDAWYDALPM-YPQTLLNVRV 372 (440)
T ss_pred CHHHHHHhhhh-cCceeEEEEe
Confidence 99999999997 6656667777
No 21
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=100.00 E-value=2e-72 Score=584.12 Aligned_cols=378 Identities=20% Similarity=0.244 Sum_probs=317.4
Q ss_pred cCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy1654 35 FGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRV 114 (459)
Q Consensus 35 Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~ 114 (459)
|||+||||++|. .+|||+++.++|+|||+++.+..+. .++|+||||+|.+|++|++++++||+++|+ +|+++ |.
T Consensus 1 Fgt~giRG~~~~--~~ltp~~~~~l~~a~~~~l~~~~~~--~~~V~Vg~D~R~~s~~l~~a~~~gL~s~G~-~V~~~-g~ 74 (443)
T TIGR01455 1 FGTDGVRGRAGQ--EPLTAELALLLGAAAGRVLRQGRDT--APRVVIGKDTRLSGYMLENALAAGLNSAGV-DVLLL-GP 74 (443)
T ss_pred CCCCccceecCC--CCCCHHHHHHHHHHHHHHHHhcCCC--CCeEEEEeCCCcChHHHHHHHHHHHHHCCC-eEEEe-CC
Confidence 899999999993 1799999999999999999764211 236999999999999999999999999999 99999 99
Q ss_pred ccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccC-CCCCCC
Q psy1654 115 CPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRD-QIQPCP 193 (459)
Q Consensus 115 ~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~-~~~~~~ 193 (459)
+|||+++|++++++++|||||||||||++||||||++++|.++++.. +++|++.+... ..+.+..... |.+..
T Consensus 75 ~pTP~~~~av~~~~~~gGI~iTaSHnP~~~nGiK~~~~~G~~i~~~~----~~~I~~~~~~~-~~~~~~~~~~~g~~~~- 148 (443)
T TIGR01455 75 LPTPAVAYLTRTLRADAGVMISASHNPYEDNGIKFFGPGGFKLDDAT----EAAIEALLDEA-DPLPRPESEGLGRVKR- 148 (443)
T ss_pred cCcHHHHHHHHhcCCCeEEEEecCCCCcccCcEEEecCCCCcCCHHH----HHHHHHHHhcC-ccccCCCccCceEEEE-
Confidence 99999999999999999999999999999999999999999987653 44444433211 0122111111 22221
Q ss_pred cchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCchh
Q psy1654 194 LDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSS 273 (459)
Q Consensus 194 ~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~ 273 (459)
..++.+.|++.|++.++ . .++.+++|||+||+||+++.+++.+|++|||++ + .+|++|||.||+. .|. +++
T Consensus 149 ~~~~~~~Y~~~l~~~i~-~-~~~~~~lkVvvD~~~G~~~~~~~~ll~~lg~~v-~--~in~~~d~~~~~~---~~~-~~~ 219 (443)
T TIGR01455 149 YPDAVGRYIEFLKSTLP-R-GLTLSGLKVVLDCANGAAYKVAPHVFRELGAEV-I--AIGVEPDGLNIND---GCG-STH 219 (443)
T ss_pred cccHHHHHHHHHHHHhh-c-ccccCCCEEEEECCCchHHHHHHHHHHHcCCEE-E--EEccCCCCCCCCC---CCC-CCC
Confidence 24678999999998876 2 256679999999999999999999999999984 3 4599999999752 222 357
Q ss_pred HHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccchHH
Q psy1654 274 LDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKI 353 (459)
Q Consensus 274 l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss~~ 353 (459)
++.+.+.|++.++|+|+++||||||++++| ++| +++++|++++|+++++++... .++ + .||.|+.||.+
T Consensus 220 l~~l~~~v~~~~adlGia~DgD~DR~~~vd--~~G--~~l~~d~~~al~a~~ll~~~~--~~~----~-~vv~~v~ss~~ 288 (443)
T TIGR01455 220 LDALQKAVREHGADLGIAFDGDADRVLAVD--ANG--RIVDGDQILYIIARALKESGE--LAG----N-TVVATVMSNLG 288 (443)
T ss_pred HHHHHHHHhhcCCCEEEEEcCCCceEEEEC--CCC--cEeCHHHHHHHHHHHHHHhcC--CCC----C-cEEEEccCCHH
Confidence 889999999999999999999999999998 489 779999999999999887521 111 2 48999999999
Q ss_pred HHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCCCHHH
Q psy1654 354 LHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQ 433 (459)
Q Consensus 354 l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~Ls~ 433 (459)
++++|+++|+++++||||+++++++|.+. +++||||+|||++|++|.+++|||+++++++|+|+. ++++|++
T Consensus 289 l~~~a~~~g~~v~~t~vG~~~i~~~m~~~-----~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~ile~la~---~~~~l~~ 360 (443)
T TIGR01455 289 LERALEKLGLTLIRTAVGDRYVLEEMRES-----GYNLGGEQSGHIILLDYSTTGDGIVSALQVLTIMKK---SGSTLSE 360 (443)
T ss_pred HHHHHHHcCCeEEEeCChHHHHHHHHHhc-----CCEEEEcCcceEEecCCCcCCcHHHHHHHHHHHHHH---hCCCHHH
Confidence 99999999999999999999999998652 589999999999999999999999999999999984 7899999
Q ss_pred HHHHHHHhcccccCcccCCCCc
Q psy1654 434 LLADVYDKGNCITGGFIDPKSK 455 (459)
Q Consensus 434 ll~~lp~~y~~~~~~~~~~~~~ 455 (459)
+++++|..| +..+.|||..
T Consensus 361 l~~~~~~~~---~~~~~~~~~~ 379 (443)
T TIGR01455 361 LAAEFVPYP---QTLVNVRVAD 379 (443)
T ss_pred HHhhccccC---eeeeeEEecc
Confidence 999999745 4677999865
No 22
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=4.1e-72 Score=582.64 Aligned_cols=380 Identities=21% Similarity=0.239 Sum_probs=316.9
Q ss_pred CcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 32 RLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 32 ~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
+.+||++||||++|+ .+|||+++.++|+|||+++.+... .++|+||||+|.+|++|++++++||+++|+ +|+++
T Consensus 3 ~~~Fgt~GiRG~~~~--~~lt~e~~~~l~~a~~~~l~~~~~---~~~VvVg~D~R~~s~~l~~a~~~gL~s~Gv-~V~~~ 76 (450)
T PRK14314 3 KKLFGTDGVRGRANV--YPMTAEMALQLGRAAAYVFRNGSG---RHRVVIGKDTRLSGYMFENALIAGLCSMGV-DVLLV 76 (450)
T ss_pred CceeCCCCcceecCC--CCCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEeCCCcChHHHHHHHHHHHHHCCC-eEEEe
Confidence 589999999999997 139999999999999999975321 247999999999999999999999999999 99999
Q ss_pred CCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccc--hhhccC-C
Q psy1654 112 SRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWN--IDRIRD-Q 188 (459)
Q Consensus 112 ~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~--~~~~~~-~ 188 (459)
|.+|||+++|++++++++|||||||||||++||||||++++|.++++. .+++|++.+.. ++|. +..... +
T Consensus 77 -g~~ptP~~~~a~~~~~~~gGI~iTaShnp~~~ngiK~~~~~G~~~~~~----~~~~Ie~~~~~--~~~~~~~~~~~~~g 149 (450)
T PRK14314 77 -GPLPTPGIAFITRSMRADAGVVISASHNPYQDNGIKFFSSDGFKLPDE----VELRIEAMVLS--KDFDWLLPDAHAVG 149 (450)
T ss_pred -cccCCHHHHHHHHhcCCCEEEEEEeCCCCcccccEEEECCCCCCCCHH----HHHHHHHHHhc--CCccccccchhcCc
Confidence 999999999999999999999999999999999999999999998754 34445544321 1221 110111 2
Q ss_pred CCCCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCC
Q psy1654 189 IQPCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNP 268 (459)
Q Consensus 189 ~~~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p 268 (459)
.+.. ..++.+.|+++|++.++ .. ++.+++||||||+||+++.+++.+|++|||++ +. +|++|||.||+ +.|.|
T Consensus 150 ~~~~-~~~~~~~Y~~~l~~~id-~~-i~~~~~kVvvD~~~Ga~~~~~~~il~~lg~~v-~~--~~~~~dg~~~~-~~~~~ 222 (450)
T PRK14314 150 KAKR-IDDAPGRYIVFLKATFP-KG-LTLKGLKIVLDCANGAAYKVAPAVFEELGAEV-IC--IGVEPNGLNIN-AGCGS 222 (450)
T ss_pred eEEE-eCchHHHHHHHHHHhhc-cc-cCCCCCEEEEECCCchHHHHHHHHHHHcCCeE-EE--eccCCCCCCCC-CCCCC
Confidence 2221 23678999999999887 22 34679999999999999999999999999984 33 59999999986 23444
Q ss_pred CCchhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEec
Q psy1654 269 EEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLAST 348 (459)
Q Consensus 269 ~~~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~ 348 (459)
.+++.+.+.|++.+||+|+++||||||++++| ++| +++++|++++|+++++++... .++ ..||.|+
T Consensus 223 ---~~~~~l~~~v~~~~adlGia~DgDgDR~~~vd--~~G--~~i~~d~~~al~~~~ll~~~~--~~~-----~~vv~~v 288 (450)
T PRK14314 223 ---LHPEVIAKAVIEHGADLGIALDGDADRLIVVD--EKG--HIVDGDQIMAICATDLKKRGA--LPK-----NTLVATV 288 (450)
T ss_pred ---CCHHHHHHHHHhcCCCeEEEEcCCCceEEEEC--CCC--cCcCHHHHHHHHHHHHHHhcC--CCC-----CEEEEec
Confidence 45667889999999999999999999999998 489 789999999999999987511 121 2589999
Q ss_pred cchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCC
Q psy1654 349 VSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQG 428 (459)
Q Consensus 349 ~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~ 428 (459)
.||++++++++++|++|++||||+++++++|.+. +++||||+|||++|+.|++++|||+++++++|+++. ++
T Consensus 289 ~ss~~~~~ia~~~g~~v~~t~vG~~~i~~~m~~~-----~~~~ggE~sg~~~~~~~~~~~Dgi~a~l~~le~la~---~~ 360 (450)
T PRK14314 289 MSNMGLEVAMKELGGQVLRTPVGDRYVVEEMRRG-----GANLGGEQSGHLIFLDHNTTGDGILSALQVLRIMIE---SG 360 (450)
T ss_pred cCChHHHHHHHHcCCEEEEeCChHHHHHHHHHhc-----CCEEEEeCcccEEEeCCCCCCcHHHHHHHHHHHHHH---hC
Confidence 9999999999999999999999999999998753 589999999999999999999999999999999984 79
Q ss_pred CCHHHHHHHHHHhcccccCcccCCCCcc
Q psy1654 429 KDLHQLLADVYDKGNCITGGFIDPKSKR 456 (459)
Q Consensus 429 ~~Ls~ll~~lp~~y~~~~~~~~~~~~~~ 456 (459)
++|+++++++|. |... ...|||..+
T Consensus 361 ~~Ls~l~~~~~~-~p~~--~~~~~~~~k 385 (450)
T PRK14314 361 KPLSELAGLLEP-FPQA--LINVRVKEK 385 (450)
T ss_pred CCHHHHHhhhhh-cCcc--ceEeEeCCc
Confidence 999999998774 3322 238888553
No 23
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3.3e-72 Score=583.06 Aligned_cols=378 Identities=20% Similarity=0.248 Sum_probs=315.3
Q ss_pred cccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCC-CCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 33 LKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPN-FKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 33 ~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~-~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
.+||++||||++|+ +|||+++.++|+|||++++++... .++++|+||||+|.+|++|++++++||+++|+ +|+++
T Consensus 3 ~~Fg~~giRG~~~~---~ltpe~~~~lg~a~~~~l~~~~~~~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~-~V~~~ 78 (448)
T PRK14318 3 RLFGTDGVRGLANR---DLTAELALALGAAAARVLGHAGRPGGRRPVAVVGRDPRASGEFLEAAVSAGLASAGV-DVLRV 78 (448)
T ss_pred cccCCCCcceecCC---ccCHHHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCcCHHHHHHHHHHHHHHCCC-EEEEe
Confidence 68999999999998 899999999999999999753210 01456999999999999999999999999999 99999
Q ss_pred CCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccC-CCC
Q psy1654 112 SRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRD-QIQ 190 (459)
Q Consensus 112 ~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~-~~~ 190 (459)
|.+|||+++|++++++++|||||||||||++||||||++++|.+++.. .+++|++.+.. .+|.+..... |.+
T Consensus 79 -g~~pTP~~~~av~~~~~~gGI~ITaSHnp~~~nGiK~~~~~G~~i~~~----~~~~Ie~~~~~--~~~~~~~~~~~g~~ 151 (448)
T PRK14318 79 -GVLPTPAVAYLTAALDADFGVMISASHNPMPDNGIKFFAAGGHKLPDD----VEDRIEAVLGQ--LPWLRPTGAGVGRV 151 (448)
T ss_pred -cccCchHHHHHHHhcCCCEEEEEEcCCCCcccCCEEEEcCCCCcCCHH----HHHHHHHHHhc--cCccccccccCceE
Confidence 999999999999999999999999999999999999999999998754 34455544321 1222111111 222
Q ss_pred CCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC
Q psy1654 191 PCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE 270 (459)
Q Consensus 191 ~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~ 270 (459)
.. ..++.+.|+++|++.++ .+.+++|||+||+||+++.+++++|++|||++ +. +|+.|||.||+ ++|.
T Consensus 152 ~~-~~~~~~~Y~~~l~~~i~----~~~~~~kVvvD~~nG~~~~~~~~ll~~lG~~v-~~--in~~~dg~~~~---~~~~- 219 (448)
T PRK14318 152 ID-APDATDRYLRHLLGALP----TRLDGLKVVVDCAHGAASGVAPEAYRAAGADV-IA--INADPDGLNIN---DGCG- 219 (448)
T ss_pred EE-CCcHHHHHHHHHHHHhc----cccCCCEEEEECCCchHHHHHHHHHHHcCCEE-EE--eccCCCCCCCC---CCCC-
Confidence 21 23678999999998876 24579999999999999999999999999984 33 59999999975 2222
Q ss_pred chhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccc
Q psy1654 271 PSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVS 350 (459)
Q Consensus 271 ~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~s 350 (459)
+.+++.+.+.|++.++|+|+++||||||++++| ++| +++++|++++|++.++++. .+. ....||.|+.|
T Consensus 220 ~~~l~~l~~~v~~~~adlGia~DgD~DR~~~vd--~~G--~~l~~d~~~~l~a~~l~~~----~~~---~~~~vV~~v~s 288 (448)
T PRK14318 220 STHLEQLQAAVVAHGADLGLAHDGDADRCLAVD--ANG--NVVDGDQIMAILALAMKEA----GEL---ASDTLVATVMS 288 (448)
T ss_pred CCCHHHHHHHHHhcCCCEEEEecCCCceEEEEC--CCC--cEeCHHHHHHHHHHHHHHh----cCC---CCCcEEEEecC
Confidence 357889999999999999999999999999998 489 7899999999999877653 110 01248889999
Q ss_pred hHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCCC
Q psy1654 351 SKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKD 430 (459)
Q Consensus 351 s~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~ 430 (459)
|++++++++++|+++++||||+++++++|.+. +++||||+|||++|++|++++|||+++++++|+++. ++++
T Consensus 289 s~~~~~~~~~~g~~v~~t~vG~~~i~~~~~~~-----~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~ile~la~---~~~~ 360 (448)
T PRK14318 289 NLGLKLAMREAGITVVTTAVGDRYVLEEMRAG-----GYSLGGEQSGHIVMPDHATTGDGILTGLRLMARMAQ---TGKS 360 (448)
T ss_pred chHHHHHHHHcCCcEEEeCChHHHHHHHHHhc-----CcEEEEcCcCcEEecCCCCCCCHHHHHHHHHHHHHH---hCCC
Confidence 99999999999999999999999999998652 589999999999999999999999999999999984 7999
Q ss_pred HHHHHHHHHHhcccccCcccCCCCc
Q psy1654 431 LHQLLADVYDKGNCITGGFIDPKSK 455 (459)
Q Consensus 431 Ls~ll~~lp~~y~~~~~~~~~~~~~ 455 (459)
|+++++++|..+.. ...|||..
T Consensus 361 ls~l~~~~~~~p~~---~~~~~~~~ 382 (448)
T PRK14318 361 LAELASAMTVLPQV---LINVPVVD 382 (448)
T ss_pred HHHHHhhhhhcCcc---eeeeecCC
Confidence 99999987764332 23899854
No 24
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=100.00 E-value=1e-71 Score=590.30 Aligned_cols=392 Identities=22% Similarity=0.248 Sum_probs=317.6
Q ss_pred CCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEE
Q psy1654 31 KRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFL 110 (459)
Q Consensus 31 ~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~ 110 (459)
++++|||+||||+++. ..||++++.++|+|||+++.+... ...|+||||+|.+|++|++++++||+++|+ +|++
T Consensus 37 ~~~~FGT~GiRG~~~~--~~lt~~~~~~i~~a~a~~~~~~~~---~~~VvVG~D~R~sS~~~~~a~a~gL~s~Gi-~V~~ 110 (543)
T TIGR01132 37 HAVKFGTSGHRGSALR--GTFNEPHILAIAQAIAEYRAAQGI---TGPLYIGKDTHALSEPAFISVLEVLAANGV-EVIV 110 (543)
T ss_pred CccCCcCccccCCccc--CccCHHHHHHHHHHHHHHHHHhCC---CCcEEEEeCCCcCCHHHHHHHHHHHHHCCC-EEEE
Confidence 3699999999999874 259999999999999999875421 134999999999999999999999999999 9999
Q ss_pred c--CCCccchhHHHHHHHhc-----CCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchh
Q psy1654 111 V--SRVCPTPIIAYSIRALN-----LALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNID 183 (459)
Q Consensus 111 ~--~g~~ptP~~~~av~~~~-----~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~ 183 (459)
+ .|.+|||+++|++++++ +.+||||||||||++||||||++++|.+++++..++|++.+++.+....+++.+.
T Consensus 111 ~~~~G~~pTP~~~~av~~~~~~~~~~~gGI~ITASHNP~e~NGiK~~~~~G~~i~~~~~~~Ie~~i~~~~~~~~e~~~~~ 190 (543)
T TIGR01132 111 QENNGFTPTPAVSHAILTHNKKGEPLADGIVITPSHNPPEDGGIKYNPPNGGPADTEATQAIEDRANALLANGLKGVKRL 190 (543)
T ss_pred eCCCCcCCchHHHHHHHHhcccccccceEEEEeCCCCCCccCeEEEECCCCCCCChHHHHHHHHHHHHhhhccccccccc
Confidence 5 28999999999999887 7889999999999999999999999999987655555554432211000112110
Q ss_pred ---hccC-CCCCCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCC
Q psy1654 184 ---RIRD-QIQPCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPE 259 (459)
Q Consensus 184 ---~~~~-~~~~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~ 259 (459)
.... +.+. ..+..+.|++++.+.++ .+.++.+++||||||+||+++.+++.+|++|||++ +. +|+.|||.
T Consensus 191 ~~~~~~~~g~~~--~~d~~~~Y~~~l~~~i~-~~~i~~~~lkVvvD~~~Ga~~~~~~~il~~lG~~v-~~--l~~~~d~~ 264 (543)
T TIGR01132 191 PLAQALASGTVK--AHDLVQPYVDGLADIVD-MAAIQKAGLRLGVDPLGGSGIDYWKRIAEKYNLNL-TL--VNPQVDPT 264 (543)
T ss_pred ChhhhhccCcee--cCCcHHHHHHHHHHhhh-hhhhhcCCceEEEeCCCCCcHHHHHHHHHHcCCCE-EE--EcCeeCCC
Confidence 0111 2322 24678999999999887 35566679999999999999999999999999984 44 49999999
Q ss_pred CCCCCCCCCC-------C-chhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhh
Q psy1654 260 FPTVRFPNPE-------E-PSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLK 331 (459)
Q Consensus 260 f~~~~~p~p~-------~-~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~ 331 (459)
||.. +|+|+ . +++++.+.+ ++.++|+|+++||||||++++|+ +| .+++|++++|+++++++..+
T Consensus 265 f~~~-~pd~~~~~~~~~~~~e~l~~l~~--~~~~aDlGia~DgDaDR~~vvd~--~g---~i~gd~~~aLla~~ll~~~~ 336 (543)
T TIGR01132 265 FRFM-TLDKDGKIRMDCSSPYAMAGLLA--LRDKYDLAFGNDPDYDRHGIVTP--AG---LMNPNHYLAVAINYLFQHRP 336 (543)
T ss_pred CCCC-CCCcccccCCCCCCHHHHHHHhh--cccCCCEEEEeCCCCCCeeEEec--Cc---eeCHHHHHHHHHHHHHHhCc
Confidence 9873 34322 1 345555554 57899999999999999999995 56 49999999999999987521
Q ss_pred hcCCCCCCCCceEEEeccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCC-----Ccc
Q psy1654 332 SKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGT-----HVL 406 (459)
Q Consensus 332 ~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~-----~~~ 406 (459)
. .++ +.+|+.++.||++++++|+++|++++||||||+||+++|.+. +++||||+|||++|+. |.+
T Consensus 337 ~-~~~----~~~Vv~tv~sS~~l~~ia~~~g~~v~~t~vG~k~i~~~m~~~-----~~~~ggEeSgg~~~~~~~~~~~~~ 406 (543)
T TIGR01132 337 Q-WGG----DVAVGKTLVSSAMIDRVVADLGRQLVEVPVGFKWFVDGLFDG-----SFGFGGEESAGASFLRFDGTPWST 406 (543)
T ss_pred c-cCC----CceEEEEeccHHHHHHHHHHcCCceeecCccHHHHHHHHhcC-----CeEEEEeccCceEecccCCCCccc
Confidence 0 011 235888999999999999999999999999999999998652 5899999999999954 789
Q ss_pred cCcHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccccc---CcccCCCCc
Q psy1654 407 DKDGVTAAVRMAELVAYLDSQGKDLHQLLADVYDKGNCIT---GGFIDPKSK 455 (459)
Q Consensus 407 ~~Dgi~a~l~ile~la~~~~~~~~Ls~ll~~lp~~y~~~~---~~~~~~~~~ 455 (459)
++|||++++++||+++. ++++|+++++++|++|+..+ ..++|||..
T Consensus 407 ~~Dgi~a~l~ile~la~---~~~~L~~ll~~lp~~~~~~~~~~~~~~~~~~~ 455 (543)
T TIGR01132 407 DKDGIIMCLLAAEITAV---TGKNPQQHYNELAAKFGAPSYNRIQAPATSAQ 455 (543)
T ss_pred CcHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHhCCceEEEEecCChHHH
Confidence 99999999999999994 79999999999999887655 667888853
No 25
>PRK07564 phosphoglucomutase; Validated
Probab=100.00 E-value=5.1e-72 Score=592.57 Aligned_cols=408 Identities=23% Similarity=0.253 Sum_probs=327.0
Q ss_pred cchhcCCHHHHHHhhcCCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHH
Q psy1654 15 DDAFFKNKEAMSDLFLKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAE 94 (459)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~ 94 (459)
.+.|+-++..+...| ++++|||+||||+++. +++|++++.++|+|||.++.++.. .++|+||||+|.+|++|++
T Consensus 21 ~~~~~~~~~~~~~~~-~~~~FGT~GiRg~~~~--~~lt~~~v~~i~~a~a~~~~~~~~---~~~VvVG~D~R~~S~~~a~ 94 (543)
T PRK07564 21 VSAYYTLKPDPTNPF-QDVKFGTSGHRGSSLQ--PSFNENHILAIFQAICEYRGKQGI---TGPLFVGGDTHALSEPAIQ 94 (543)
T ss_pred HhhhhcccCCCCCCc-CCCCCcccccccccCC--CCcCHHHHHHHHHHHHHHHHhcCC---CCeEEEEecCCcCCHHHHH
Confidence 345566666666666 5789999999999964 369999999999999999975321 2369999999999999999
Q ss_pred HHHHHHHhCCCcEEEEcC--CCccchhHHHHHHHhc-----CCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHH
Q psy1654 95 LTASVFLNGGVKRVFLVS--RVCPTPIIAYSIRALN-----LALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQE 167 (459)
Q Consensus 95 a~~~gL~~~G~~~V~~~~--g~~ptP~~~~av~~~~-----~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~ 167 (459)
++++||+++|+ +|+++. |.+|||+++|++++++ +.|||||||||||++||||||++++|.+++++..++|++
T Consensus 95 a~a~gL~s~Gi-~V~~~~~~g~~pTP~~~~av~~~~~~~~~~~gGImITASHNP~e~NGiK~~~~~G~~i~~~~~~~Ie~ 173 (543)
T PRK07564 95 SALEVLAANGV-GVVIVGRGGYTPTPAVSHAILKYNGRGGGLADGIVITPSHNPPEDGGIKYNPPNGGPADTDVTDAIEA 173 (543)
T ss_pred HHHHHHHHCCC-EEEEeCCCCcCCchHHHHHHHHhCCCccccceeEEEecCCCCcccCeEEEECCCCCcCChHHHHHHHH
Confidence 99999999999 999652 8999999999999999 999999999999999999999999999998765555555
Q ss_pred HHHhhccccccccch---hhccC-CCCCCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcC
Q psy1654 168 EIMRNLEIEDHIWNI---DRIRD-QIQPCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFK 243 (459)
Q Consensus 168 ~ie~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG 243 (459)
.+++......+++.+ ..+.. +.+. ..++.+.|+++|.+.++ .+.++.+++|||+||+||+++.+++++|++||
T Consensus 174 ~~~~~~~~~~e~~~~~~~~~~~~~g~~~--~~d~~~~Y~~~l~~~i~-~~~i~~~~lkIvvD~~~G~~~~~~~~ll~~lG 250 (543)
T PRK07564 174 RANELLAYGLKGVKRIPLDRALASMTVE--VIDPVADYVEDLENVFD-FDAIRKAGLRLGVDPLGGATGPYWKAIAERYG 250 (543)
T ss_pred HHHhhhhcccccccccChhHhccCCcEE--ecccHHHHHHHHHHhhC-hhhhhcCCceEEEecCCCCcHHHHHHHHHHcC
Confidence 432222100011211 11111 2222 24678999999999887 44456679999999999999999999999999
Q ss_pred CCCeEEeccccccCCCCCC-------CCCCCCCCchhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCc
Q psy1654 244 FKPLVLVDAQCSPDPEFPT-------VRFPNPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGN 316 (459)
Q Consensus 244 ~~~~~~v~~~~~pd~~f~~-------~~~p~p~~~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d 316 (459)
|++ +. +++.|||.|+. .+.|+|+.+.+|..+.+ ++.++|+|+++||||||++++| + | +++++|
T Consensus 251 ~~v-~~--l~~~~d~~f~~~~~~~~~~~~p~P~~~~~L~~l~~--~~~~adlGia~DgDgDRl~vvd--~-G--~~i~~d 320 (543)
T PRK07564 251 LDL-TV--VNAPVDPTFNFMPLDDDGKIRMDCSSPYAMAGLLA--LKDAFDLAFANDPDGDRHGIVT--P-G--GLMNPN 320 (543)
T ss_pred CcE-EE--eCCcCCCCCCCCCCCccCCcCCCCChHHHHHHHHh--hccCCCEEEEECCCCCceeEEe--c-C--eeechh
Confidence 974 44 48899998852 14588876556555543 4778999999999999999999 4 8 789999
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecC
Q psy1654 317 ELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEA 396 (459)
Q Consensus 317 ~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~s 396 (459)
++++|+++++++..+. +++ +..||.|++||.+++++|+++|+++++|||||+|++++|.+. +++||||+|
T Consensus 321 ~~~alla~~ll~~~~~-~~~----~~~Vv~~v~sS~~l~~ia~~~g~~v~~t~vG~k~i~~~m~~~-----~~~~ggEeS 390 (543)
T PRK07564 321 HYLAVAIAYLFHHRPG-WRA----GAGVGKTLVSSAMIDRVAAKLGRKLYEVPVGFKWFVNGLDDG-----SLGFGGEES 390 (543)
T ss_pred HHHHHHHHHHHHhCcC-CCC----CceEEEEecchHHHHHHHHHhCCeeeecchHHHHHHHHHhcC-----ceEEEecCc
Confidence 9999999998764211 111 225899999999999999999999999999999999998652 689999999
Q ss_pred CccccCC-----CcccCcHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccc---cCcccCCCCc
Q psy1654 397 IGFMDGT-----HVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADVYDKGNCI---TGGFIDPKSK 455 (459)
Q Consensus 397 gg~~~~~-----~~~~~Dgi~a~l~ile~la~~~~~~~~Ls~ll~~lp~~y~~~---~~~~~~~~~~ 455 (459)
||++|+. |.+++|||++++++||+++. ++++|++++++||++|+.. +..+.|||..
T Consensus 391 gg~~~~~~~~~~~~~~~Dgi~a~l~ile~la~---~~~~L~ell~~l~~~~g~~~~~~~~~~~~~~~ 454 (543)
T PRK07564 391 AGASFLRRDGSVWTTDKDGLIAVLLAAEILAV---TGKSPSEIYRELWARFGRPYYSRHDAPATPEQ 454 (543)
T ss_pred CCeeecccCCCCccccchHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHhCCceEEEecCCccHHH
Confidence 9997643 68999999999999999984 7999999999999977744 3445687753
No 26
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.1e-71 Score=579.77 Aligned_cols=366 Identities=23% Similarity=0.279 Sum_probs=308.0
Q ss_pred cccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcC
Q psy1654 33 LKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVS 112 (459)
Q Consensus 33 ~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~ 112 (459)
.+||++||||++|+ +|||+++.++|+|||+++.+... ++++|+||||+|++|++|++++++||+++|+ +|+++
T Consensus 2 ~~Fg~~giRG~~~~---~ltpe~~~~ig~a~~~~l~~~~~--~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~-~V~~~- 74 (448)
T PRK14316 2 KYFGTDGVRGVANK---ELTPELAFKLGRAGGYVLTKHET--ERPKVLVGRDTRISGDMLESALIAGLLSVGA-EVMRL- 74 (448)
T ss_pred ceeccCCcceEcCC---CCCHHHHHHHHHHHHHHHHhccC--CCCeEEEEECCCcCHHHHHHHHHHHHHHCCC-EEEEe-
Confidence 58999999999998 89999999999999999975211 1456999999999999999999999999999 99999
Q ss_pred CCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccC-CCCC
Q psy1654 113 RVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRD-QIQP 191 (459)
Q Consensus 113 g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~-~~~~ 191 (459)
|.+|||+++|++++++++|||||||||||++||||||++++|.++++. .+++|++.+....+++.+..... +.+.
T Consensus 75 g~~pTP~~~~av~~~~~~gGi~ITaSHnp~~~nGiK~~~~~G~~i~~~----~~~~Ie~~~~~~~~~~~~~~~~~~g~~~ 150 (448)
T PRK14316 75 GVIPTPGVAYLTRALGADAGVMISASHNPVEDNGIKFFGSDGFKLSDE----QEDEIEALLDAEEDTLPRPSGEGLGTVS 150 (448)
T ss_pred cccchHHHHHHHHHhcCcEEEEEEecCCChhhCcEEEEcCCCCcCCHH----HHHHHHHHHhccccccccCccccceeEE
Confidence 999999999999999999999999999999999999999999998754 34445444321101222211111 2222
Q ss_pred CCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCc
Q psy1654 192 CPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEP 271 (459)
Q Consensus 192 ~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~ 271 (459)
. ..+..+.|++.|.+.++. ..+++||||||+||+++.+++++|++|||++ +. +|++|||.||+ +.|.|
T Consensus 151 ~-~~~~~~~Y~~~l~~~i~~----~~~~lkvvvD~~nG~~~~~~~~ll~~lg~~v-~~--in~~~dg~~~~-~~~~~--- 218 (448)
T PRK14316 151 D-YPEGLRKYLQFLKSTIDE----DLSGLKVALDCANGATSSLAPRLFADLGADV-TV--IGTSPDGLNIN-DGVGS--- 218 (448)
T ss_pred E-eCcHHHHHHHHHHHhcCc----ccCCCEEEEECCCchhhHHHHHHHHHcCCeE-EE--EccCCCCCCCC-CCCCC---
Confidence 1 235778899999998872 2368999999999999999999999999984 44 49999999986 33444
Q ss_pred hhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccch
Q psy1654 272 SSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSS 351 (459)
Q Consensus 272 ~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss 351 (459)
.+++.+.+.|++.++|+|+++||||||++++| ++| +++++|++++|+++++++... .++ ..||.|+.||
T Consensus 219 ~~~~~l~~~v~~~~adlGia~DgDaDR~~~vd--~~G--~~i~~d~~~~l~a~~ll~~~~--~~~-----~~vv~~v~ss 287 (448)
T PRK14316 219 THPEALQELVVEKGADLGLAFDGDADRLIAVD--ENG--NIVDGDKIMFICGKYLKEKGR--LKK-----NTIVTTVMSN 287 (448)
T ss_pred CCHHHHHHHHhhcCCCEEEEEcCCCceEEEEC--CCC--CEeCHHHHHHHHHHHHHHhCC--CCC-----CeEEEeccCc
Confidence 34667889999999999999999999999998 489 789999999999999987521 111 2488999999
Q ss_pred HHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCCCH
Q psy1654 352 KILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDL 431 (459)
Q Consensus 352 ~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~L 431 (459)
.+++++++++|+++++||||+++++++|.+. ++++|||+|||++|++|.+++|||+++++++|+++. .+++|
T Consensus 288 ~~~~~~~~~~g~~v~~~~vG~~~i~~~m~~~-----~~~~ggE~sG~~~f~~~~~~~Dgi~a~l~ile~l~~---~~~~l 359 (448)
T PRK14316 288 LGFYKALEEEGINSVKTKVGDRYVVEEMRKG-----GYNLGGEQSGHIIFLDYNTTGDGLLTALQLAKVMKE---TGKKL 359 (448)
T ss_pred hHHHHHHHHcCCeEEEeCChHHHHHHHHHhc-----CCeEEEcCcccEEecccCCCCcHHHHHHHHHHHHHH---hCCCH
Confidence 9999999999999999999999999998652 589999999999999999999999999999999984 79999
Q ss_pred HHHHHHHHH
Q psy1654 432 HQLLADVYD 440 (459)
Q Consensus 432 s~ll~~lp~ 440 (459)
+++++++|.
T Consensus 360 s~l~~~~~~ 368 (448)
T PRK14316 360 SELAAEMKK 368 (448)
T ss_pred HHHHhhhhh
Confidence 999999864
No 27
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=7.9e-72 Score=577.17 Aligned_cols=368 Identities=20% Similarity=0.275 Sum_probs=311.4
Q ss_pred CcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 32 RLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 32 ~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
-.+||++||||++|+ +|||+++.++|+|||+++.+ + +|+||||+|.+|++|++++++||+++|+ +|+++
T Consensus 3 ~~~Fg~~gIRG~~~~---~ltpe~~~~lg~a~~~~l~~------~-~VvVg~D~R~ss~~l~~a~~~gL~s~G~-~V~~~ 71 (429)
T PRK14322 3 VKYFGTDGIRGVFGE---TLTDELAFKVGKALGEIVGE------G-KVIVGKDTRVSGDSLEAAISAGLTSMGV-DVLLC 71 (429)
T ss_pred cceecCCCcceecCC---CcCHHHHHHHHHHHhEEecC------C-cEEEEeCCCcCHHHHHHHHHHHHHHCCC-eEEEe
Confidence 478999999999998 89999999999999999853 3 4999999999999999999999999999 99999
Q ss_pred CCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhh-ccCCCC
Q psy1654 112 SRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDR-IRDQIQ 190 (459)
Q Consensus 112 ~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~-~~~~~~ 190 (459)
|.+|||+++|++++++ +|||||||||||++||||||+ ++|.+++.. .+++|++.+.. +.|.+.. . |.+
T Consensus 72 -g~~pTP~~~~av~~~~-~gGI~ITaSHnP~~~nGiK~~-~~G~~i~~~----~~~~ie~~~~~--~~~~~~~~~--g~~ 140 (429)
T PRK14322 72 -GILPTPAVALLTRITR-SFGVVISASHNPPEYNGIKVL-KGGYKIPDE----MEVEIEERIES--GYFPVRSVV--GRT 140 (429)
T ss_pred -cCcCHHHHHHHHhccC-CceEEEECCCCChHhCCEEEe-cCCCcCCHH----HHHHHHHHHhc--CCCccccCc--eeE
Confidence 9999999999999885 999999999999999999999 999998754 34455544321 1222211 1 222
Q ss_pred CCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC
Q psy1654 191 PCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE 270 (459)
Q Consensus 191 ~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~ 270 (459)
.. ..+..+.|++++++.++. ++.+++||||||+||+++.+++++|++|||++ +. +|++|||.||+. +|.
T Consensus 141 ~~-~~~~~~~Y~~~l~~~v~~---~~~~~~kVvvD~~nG~~~~~~~~ll~~lg~~v-~~--ln~~~dg~~~~~---~~~- 209 (429)
T PRK14322 141 KS-FREGRDMYIGAVLEMFRD---LDLTGEMVSLDLANGATTTTAKEVFEFLGAKV-EV--FNDSQDGLLINQ---GCG- 209 (429)
T ss_pred Ee-ccchHHHHHHHHHHhhcc---cccCCCEEEEECCCChHHHHHHHHHHHcCCEE-EE--ECCcCCCCCCCC---CCC-
Confidence 21 236789999999988762 23578999999999999999999999999984 33 599999999752 221
Q ss_pred chhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccc
Q psy1654 271 PSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVS 350 (459)
Q Consensus 271 ~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~s 350 (459)
+.+++.+.+.|+ ++|+|+++||||||+.++| ++| +++++|++++|+++++++..+ .++ + .||.|+.|
T Consensus 210 ~~~l~~l~~~v~--~~dlGia~DgD~DR~~~vd--~~G--~~i~~d~~~~l~a~~l~~~~~--~~~----~-~vV~~v~s 276 (429)
T PRK14322 210 ATHPRFLAEEMK--NGKVGFTFDGDGDRVIAVD--EER--NVVNGDRIIGILAVGLKEEGR--LNS----D-TVVGTVMT 276 (429)
T ss_pred cCCHHHHHHHHH--hcCEEEEEcCCCceEEEEC--CCC--cEEChHHHHHHHHHHHHHhcC--CCC----C-eEEEeecC
Confidence 346777777776 4699999999999999999 489 889999999999999887521 111 2 58999999
Q ss_pred hHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCCC
Q psy1654 351 SKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKD 430 (459)
Q Consensus 351 s~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~ 430 (459)
|++++++++++|+++++||||+++++++|.+. +++||||+|||++|+++.+++|||++++++||+|+. ++++
T Consensus 277 s~~l~~~a~~~g~~v~~t~vG~~~i~~~m~~~-----~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~lle~la~---~~~~ 348 (429)
T PRK14322 277 NGGLEDFLKERGIKLLRTKVGDKYVLEKMLES-----GANLGGERSGHIIILDRSTTGDGLITALELMRVLKR---SGRN 348 (429)
T ss_pred chHHHHHHHHcCCeEEEeCCccHHHHHHHhhc-----CcceeccCCceEEecCCCCCCcHHHHHHHHHHHHHH---hCCC
Confidence 99999999999999999999999999999752 589999999999999999999999999999999984 8999
Q ss_pred HHHHHHHHHHhcccccCcccCCCC
Q psy1654 431 LHQLLADVYDKGNCITGGFIDPKS 454 (459)
Q Consensus 431 Ls~ll~~lp~~y~~~~~~~~~~~~ 454 (459)
|+++++++|. |...+..+.|||.
T Consensus 349 Ls~l~~~lp~-~~~~~~~v~~~~~ 371 (429)
T PRK14322 349 LSDFAKEIPD-YPQITKNVRRTER 371 (429)
T ss_pred HHHHHhhchh-cCeeeeEeeeccc
Confidence 9999999997 7777779999994
No 28
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=4.2e-71 Score=583.49 Aligned_cols=388 Identities=22% Similarity=0.249 Sum_probs=316.4
Q ss_pred CCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEE
Q psy1654 31 KRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFL 110 (459)
Q Consensus 31 ~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~ 110 (459)
+++.|||+||||+++. ++||++++.++|+|||+++.++.. .+.|+||||+|.+|.++++++++||+++|+ +|++
T Consensus 19 ~~~~FGT~GiRG~~g~--~~lt~~~v~~i~~a~~~~l~~~~~---~~~VvVg~D~R~~S~~~~~~~~~gL~s~Gi-~V~~ 92 (522)
T cd05801 19 QRVAFGTSGHRGSSLK--GSFNEAHILAISQAICDYRKSQGI---TGPLFLGKDTHALSEPAFISALEVLAANGV-EVII 92 (522)
T ss_pred ceeeEEcccccCccCC--CchhHHHHHHHHHHHHHHHHhhCC---CCeEEEEeCCCcCCHHHHHHHHHHHHHCCC-EEEE
Confidence 4689999999999874 369999999999999999976421 235999999999888888888899999999 9995
Q ss_pred ---cCCCccchhHHHHHHHhcCCe------EEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccc----
Q psy1654 111 ---VSRVCPTPIIAYSIRALNLAL------GIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIED---- 177 (459)
Q Consensus 111 ---~~g~~ptP~~~~av~~~~~~g------Gi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~---- 177 (459)
+ |.+|||+++|+++++++.+ ||||||||||++||||||++++|.+++.. ++++|++....+.
T Consensus 93 ~~~~-g~~pTP~~~~av~~~~~~~~~~~~gGI~ITASHNP~~~NGiK~~~~~G~~~~~~----~~~~Ie~~~~~~~~~~~ 167 (522)
T cd05801 93 QQND-GYTPTPVISHAILTYNRGRTEGLADGIVITPSHNPPEDGGFKYNPPHGGPADTD----ITRWIEKRANALLANGL 167 (522)
T ss_pred eCCC-CCCCchHHHHHHHHhccccccCCCcEEEEECCCCCcccCEEEEECCCCCCCCHH----HHHHHHHhhhhhhhccc
Confidence 6 8999999999999998864 99999999999999999999999988644 4555554321100
Q ss_pred cccch---hhc-cCCCCCCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccc
Q psy1654 178 HIWNI---DRI-RDQIQPCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQ 253 (459)
Q Consensus 178 ~~~~~---~~~-~~~~~~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~ 253 (459)
+++.+ ... ..+.+. ..++.+.|++.+.+.++ .+.++.+++|||+||+||+++.+++.+|++|||++ +. ++
T Consensus 168 ~~~~~~~~~~~~~~~~~~--~~~~~~~Y~~~l~~~v~-~~~~~~~~lkVvvd~~~G~~~~~~~~ll~~lG~~v-~~--l~ 241 (522)
T cd05801 168 KGVKRIPLEAALASGYTH--RHDFVTPYVADLGNVID-MDAIRKSGLRLGVDPLGGASVPYWQPIAEKYGLNL-TV--VN 241 (522)
T ss_pred ccccccchhhhhccCcee--cCCcHHHHHHHHHHhhC-hhhhhcCCceEEEeCCCCccHHHHHHHHHHcCCCE-EE--Ec
Confidence 11111 010 112222 24678999999999887 34556679999999999999999999999999974 44 49
Q ss_pred cccCCCCCCCCCC--------CCCCchhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHH
Q psy1654 254 CSPDPEFPTVRFP--------NPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWW 325 (459)
Q Consensus 254 ~~pd~~f~~~~~p--------~p~~~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ 325 (459)
+.|||.||.. +| +|+.+++++.+.+. ..++|+|+++||||||++++|+ +| +++++|++++|++++
T Consensus 242 ~~~d~~f~~~-~p~~~~~~~~~p~~~~~l~~l~~~--~~~adlGia~DgDaDRl~vvd~--~G--~~l~gd~~~aLla~~ 314 (522)
T cd05801 242 PKVDPTFRFM-TLDHDGKIRMDCSSPYAMAGLLKL--KDKFDLAFANDPDADRHGIVTP--SA--GLMNPNHYLSVAIDY 314 (522)
T ss_pred CeeCCCCCCC-CCCcccCCCCCCCCHHHHHHHHHh--hcCCCEEEEECCCccceeEEec--CC--eEECHHHHHHHHHHH
Confidence 9999999963 34 34445677777765 3489999999999999999995 78 889999999999999
Q ss_pred HHHHhhhcCCCCCCCCceEEEeccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCC--
Q psy1654 326 ALHRLKSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGT-- 403 (459)
Q Consensus 326 ll~~~~~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~-- 403 (459)
+++..+ ..+ ++..||.+++||.+++++|+++|+++++|||||+||.++|.+. +++||||+|||++|+.
T Consensus 315 ll~~~~-~~~----~~~~vv~tv~sS~~l~~ia~~~g~~~~~t~vG~k~i~~~m~~~-----~~~~ggEeSgg~~~~~~~ 384 (522)
T cd05801 315 LFTHRP-LWN----KSAGVGKTLVSSSMIDRVAAALGRKLYEVPVGFKWFVDGLLDG-----SLGFGGEESAGASFLRRD 384 (522)
T ss_pred HHHhCc-ccC----CCceEEEEcchHHHHHHHHHHcCCeeeecCccHHHHHHHHhcC-----CeEEEEeccCceEeccCC
Confidence 987511 001 1235899999999999999999999999999999999998652 5789999999999976
Q ss_pred ---CcccCcHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccccc---CcccCCCCc
Q psy1654 404 ---HVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADVYDKGNCIT---GGFIDPKSK 455 (459)
Q Consensus 404 ---~~~~~Dgi~a~l~ile~la~~~~~~~~Ls~ll~~lp~~y~~~~---~~~~~~~~~ 455 (459)
+.+++|||+++++++|+++. ++++|++++++||++|+..+ ..+.|||..
T Consensus 385 ~~~~~~~~Dgi~a~l~~le~la~---~~~~L~~~l~~l~~~~g~~~~~~~~v~~~~~~ 439 (522)
T cd05801 385 GTVWTTDKDGIIMCLLAAEILAV---TGKDPGQLYQELTERFGEPYYARIDAPATPEQ 439 (522)
T ss_pred CCCcccCchHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHCcCeeeccCCCChHHH
Confidence 88999999999999999984 78999999999998886444 678898853
No 29
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.1e-70 Score=570.89 Aligned_cols=374 Identities=18% Similarity=0.213 Sum_probs=311.2
Q ss_pred cccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcC
Q psy1654 33 LKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVS 112 (459)
Q Consensus 33 ~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~ 112 (459)
.+|||+||||+++. .+|||+++.++|+|||+++.+.. ..++|+||||+|.+|++|++++++||+++|+ +|+++
T Consensus 3 ~~Fgt~giRG~~~~--~~ltpe~~~~lg~a~g~~l~~~~---~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~-~V~d~- 75 (443)
T PRK14320 3 KYFGTDGIRGEVAN--STITVEFTQKLGNAVGSLINQKN---YPKFVIVGQDTRSSGGFLKFALVSGLNAAGI-DVLDL- 75 (443)
T ss_pred cccCCCCeeeEcCC--CCCCHHHHHHHHHHHHHhHhhCC---CCCeEEEEECCCcCHHHHHHHHHHHHHHCCC-EEEEe-
Confidence 68999999999963 16999999999999999996531 1256999999999999999999999999999 99999
Q ss_pred CCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccC-CCCC
Q psy1654 113 RVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRD-QIQP 191 (459)
Q Consensus 113 g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~-~~~~ 191 (459)
|.+|||+++|+++++++.|||||||||||++||||||++++|.+++++..++|++.+++ .|.+..... +.+.
T Consensus 76 g~~pTP~~~~av~~~~~~gGI~ITaSHNp~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~-------~~~~~~~~~~g~~~ 148 (443)
T PRK14320 76 GVVPTPVVAFMTVKHRAAAGFVITASHNKFTDNGIKLFSSNGFKLDDALEEEVEDMIDG-------DFIYQPQFKFGSYK 148 (443)
T ss_pred cccCchHHHHHHHHcCCceEEEEEeCCCchHHCeEEEECCCCCcCCHHHHHHHHHHHhc-------cccccccccCcceE
Confidence 99999999999999999999999999999999999999999999886544444443321 222111011 3332
Q ss_pred CCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCc
Q psy1654 192 CPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEP 271 (459)
Q Consensus 192 ~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~ 271 (459)
. ..++.+.|++++.+.++. +...++|||+||+||+++.+++++|++|||++ +. +|++|||.|++ |+|. +
T Consensus 149 ~-~~~~~~~Y~~~l~~~~~~---~~~~~~kVvvD~~nG~~~~~~~~ll~~lg~~v-~~--i~~~~dg~~~~---~~~~-~ 217 (443)
T PRK14320 149 I-LANAIDEYIESIHSRFAK---FVNYKGKVVVDCAHGAASHNFEALLDKFGINY-VS--IASNPDGLNIN---VGCG-A 217 (443)
T ss_pred e-ccchHHHHHHHHHHHHHh---hccCCCEEEEECCCchHHHHHHHHHHHcCCcE-EE--ECCcCCCCCCC---CCCc-h
Confidence 2 236789999999887651 12235799999999999999999999999985 34 48999999975 2332 3
Q ss_pred hhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccch
Q psy1654 272 SSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSS 351 (459)
Q Consensus 272 ~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss 351 (459)
++++.+++.|++.++|+|+++||||||++++| ++| +++++|++++|+++++++. . .++ .+|.++.||
T Consensus 218 ~~l~~l~~~v~~~~adlGia~DgDaDR~~~vd--~~G--~~l~gd~~~al~a~~l~~~-~--~~~------~vV~~~~~s 284 (443)
T PRK14320 218 TCVSNIKKAVKEQKADLGISLDGDADRIIIVD--ENG--QEIDGDGILNILAQYSDIC-G--GTN------GIVGTQMTN 284 (443)
T ss_pred HhHHHHHHHHHHcCCCEEEEECCCCceEEEEC--CCC--cccCHHHHHHHHHHHHHHh-C--CCC------CEEEecCCc
Confidence 67999999999999999999999999999998 489 7899999999999988653 1 111 377888888
Q ss_pred HHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCCCH
Q psy1654 352 KILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDL 431 (459)
Q Consensus 352 ~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~L 431 (459)
.+++++++++|+++++||||+++++++|.+. +++||||+|||++|++|.+++|||++++++||+|+. ++++|
T Consensus 285 ~~~~~~~~~~g~~~~~t~vG~~~i~~~m~~~-----~~~~ggE~sG~~~~~~~~~~~Dgi~a~~~lle~la~---~~~~l 356 (443)
T PRK14320 285 MSYENHYRANKIPFIRSKVGDRYVLEDLVKY-----GYKIGGESSGHVINLNFGTTGDGLFTAIQLLAIFSQ---ADKPV 356 (443)
T ss_pred HHHHHHHHHCCCCEEEecCchHHHHHHHHhC-----CCcEeecCCccEEccCCCCcCCHHHHHHHHHHHHHH---cCCCH
Confidence 8999999999999999999999999998753 589999999999999999999999999999999984 89999
Q ss_pred HHHHHHHHHhcccccCcccCCCCc
Q psy1654 432 HQLLADVYDKGNCITGGFIDPKSK 455 (459)
Q Consensus 432 s~ll~~lp~~y~~~~~~~~~~~~~ 455 (459)
++++. |. ..+.+..+.|||..
T Consensus 357 s~l~~--~~-~~~~~~~~~~~~~~ 377 (443)
T PRK14320 357 SEFKL--QG-ELMQQTLINVPLTK 377 (443)
T ss_pred HHHhc--cc-ccCceEEEEEEecC
Confidence 99993 32 34566788899954
No 30
>PLN02307 phosphoglucomutase
Probab=100.00 E-value=1.3e-69 Score=572.81 Aligned_cols=392 Identities=21% Similarity=0.241 Sum_probs=309.4
Q ss_pred CCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEE
Q psy1654 31 KRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFL 110 (459)
Q Consensus 31 ~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~ 110 (459)
++++|||+||||+++. ++||+++.++|+|++.++.+... .+++|+||||+|.+|++|+++++++|+++|+ +|++
T Consensus 21 ~~~~FGT~GiRG~~~~---~l~~~~~~~ig~a~~~~~~~~~~--~~~~VvVG~D~R~~S~~fa~~~a~~L~a~Gi-~V~~ 94 (579)
T PLN02307 21 EGQKPGTSGLRKKVKV---FMQENYLANFVQALFNALPAEKV--KGATLVLGGDGRYFNKEAIQIIIKIAAANGV-RRVW 94 (579)
T ss_pred cCCCCcCccccccccc---cCCHHHHHHHHHHHHHHHHhcCC--CCCeEEEEeCCCcchHHHHHHHHHHHHHCCC-EEEE
Confidence 4689999999999986 79999999999977665543210 1346999999999999999999999999999 9999
Q ss_pred cC--CCccchhHHHHHHHh---cCCeEEEEeCCCCC---CCCCceeeEcCCCCccCCcchHHHHHHHHhhcc-ccccccc
Q psy1654 111 VS--RVCPTPIIAYSIRAL---NLALGIMITASHNP---KEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLE-IEDHIWN 181 (459)
Q Consensus 111 ~~--g~~ptP~~~~av~~~---~~~gGi~ITaShnp---~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~-~~~~~~~ 181 (459)
++ |.+|||+++|+++++ ++++|||||||||| ++|||||+++++|.++.++...+|++.+.+... .+...+.
T Consensus 95 ~~~~G~~PTP~vsfav~~~~~~~a~gGImITASHNP~~~~eyNGiK~~~~~G~~~~~~~~~~I~~~i~~~~~~~~~~~~~ 174 (579)
T PLN02307 95 VGQNGLLSTPAVSAVIRERDGSKANGGFILTASHNPGGPEEDFGIKYNYESGQPAPESITDKIYGNTLTIKEYKMAEDIP 174 (579)
T ss_pred eCCCCccCchHHHHHHHHhcccCCCeEEEEecCCCCCCCCCCCEEEEECCCCCcCCcHHHHHHHHHHHhhhhhhhccccc
Confidence 93 689999999999999 99999999999999 899999999999999988766666554433200 0000000
Q ss_pred -----h---hhcc-CCCCCCCcchHHHHHHHHHHhcccccCccC----CCCceEEEeCCCCCCHHHHHHHH-HHcCCCCe
Q psy1654 182 -----I---DRIR-DQIQPCPLDSVLEKYGQSVLDGAYDLGLNE----KSQVVITYSAMHGVGYPYVNQLF-KLFKFKPL 247 (459)
Q Consensus 182 -----~---~~~~-~~~~~~~~~~~~~~Y~~~l~~~~~~~~~~~----~~~~kVvvD~~~G~~~~~~~~ll-~~LG~~~~ 247 (459)
. ..++ .........+..+.|++.+.+.++ .+.++ .+++|||+||+||+++.+++++| ++|||++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~Yi~~l~~~i~-~~~i~~~~~~~~lkVvvD~~hGag~~~~~~lL~~~lG~~~- 252 (579)
T PLN02307 175 DVDLSAVGVTKFGGPEDFDVEVIDPVEDYVKLMKSIFD-FELIKKLLSRPDFTFCFDAMHGVTGAYAKRIFVEELGAPE- 252 (579)
T ss_pred ccchhhhcccccccccccceEEecCHHHHHHHHHHhhC-HHHHhhhcccCCCeEEEeCCCCccHHHHHHHHHHhcCCCc-
Confidence 0 0000 001111124678999999988876 33333 35899999999999999999999 7999985
Q ss_pred EEeccccccCCCCCCCCCCCCCCchhHHHHHH-H------HHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhH
Q psy1654 248 VLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVK-T------ADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGA 320 (459)
Q Consensus 248 ~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~-~------v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~ 320 (459)
+ ..+|+.|||.||++ +|||+. ..+.++.. . +++.++|+|+++||||||+++++ +| +++.++.+++
T Consensus 253 ~-~~i~~~pDg~Fp~~-~PnP~~-~~l~~lv~~~~~~~~~~~~~~aDlgiA~DgDaDR~~vv~---~g--~~i~~d~~l~ 324 (579)
T PLN02307 253 S-SLLNCVPKEDFGGG-HPDPNL-TYAKELVKRMGLGKTSYGDEPPEFGAASDGDGDRNMILG---KR--FFVTPSDSVA 324 (579)
T ss_pred e-eeecCccCCCCCCC-CCCCCH-HHHHHHHHHhhhccccccccCCCEEEEeCCCCCeEEEEe---cC--cEEcCChHHH
Confidence 2 25699999999995 799965 34444433 3 23446999999999999999995 67 6799999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEeccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccc
Q psy1654 321 LFGWWALHRLKSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFM 400 (459)
Q Consensus 321 L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~ 400 (459)
+++.+++.......++. . .||.|++||.+++++|+++|+++++|+||||||.++|.+. +++||||||||++
T Consensus 325 ll~~~~l~~~~~~~~g~---~-~VV~tv~sS~~l~~ia~~~G~~~~~t~vGfk~I~~~m~e~-----~~~~GgEeSgG~~ 395 (579)
T PLN02307 325 IIAANAQEAIPYFSGGL---K-GVARSMPTSAALDVVAKKLNLPFFEVPTGWKFFGNLMDAG-----KLSICGEESFGTG 395 (579)
T ss_pred HHHHHHHHhhhhhhcCC---c-EEEEeChhhHHHHHHHHHcCCeEEEcCchHHHHHHHHHhC-----CcEEEEcccCCCC
Confidence 99988765421001111 1 4999999999999999999999999999999999998652 5899999999985
Q ss_pred cCCCcccCcHHHHHHHHHHHHHHHHhC----CC--CHHHHHHHHHHhcccccCc
Q psy1654 401 DGTHVLDKDGVTAAVRMAELVAYLDSQ----GK--DLHQLLADVYDKGNCITGG 448 (459)
Q Consensus 401 ~~~~~~~~Dgi~a~l~ile~la~~~~~----~~--~Ls~ll~~lp~~y~~~~~~ 448 (459)
+.|.+++|||+++++++||+++.+++ ++ +|+++|++|+++||++...
T Consensus 396 -~~~~~dkDGi~aallllel~a~~~~~~~~~~~~~tl~~~l~el~~~~G~~~~~ 448 (579)
T PLN02307 396 -SDHIREKDGIWAVLAWLSILAHKNKDVLPGGKLVTVEDIVREHWATYGRNFYS 448 (579)
T ss_pred -CCCCCCCcHHHHHHHHHHHHHHhCCCcccccCcCCHHHHHHHHHHHhCCCeee
Confidence 88999999999999999999975544 44 8999999999999965543
No 31
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=2.4e-69 Score=558.87 Aligned_cols=362 Identities=20% Similarity=0.252 Sum_probs=298.4
Q ss_pred cccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcC
Q psy1654 33 LKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVS 112 (459)
Q Consensus 33 ~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~ 112 (459)
.+||++||||++|+ +|||+++.++|+|||++++ ++|+||||+|.+|++|++++++||+++|+ +|+++
T Consensus 2 ~~Fgt~gIRG~~~~---~ltpe~~~~lg~a~g~~~~--------~~V~Vg~D~R~ss~~l~~a~~~gL~s~G~-~V~d~- 68 (430)
T PRK14319 2 RLFGTDGIRGVVNE---FLTPEIAFRLGNALGNMVD--------KKIFIAKDTRASGDMLEAALVAGITSAGA-DVYRC- 68 (430)
T ss_pred cccCCCCcceecCC---CcCHHHHHHHHHHHHhccC--------CcEEEEeCCCCChHHHHHHHHHHHHHCCC-eEEEe-
Confidence 48999999999998 8999999999999999984 35999999999999999999999999999 99999
Q ss_pred CCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccc-cccchhhccCCCCC
Q psy1654 113 RVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIED-HIWNIDRIRDQIQP 191 (459)
Q Consensus 113 g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~-~~~~~~~~~~~~~~ 191 (459)
|.+|||+++|+++..+ .|||||||||||++||||||+. +|.+++.. .+++|++....+. ..++ .+ |.+.
T Consensus 69 g~~pTP~~~~~~~~~~-~gGi~ItaSHnp~~~ngiK~~~-~G~~i~~~----~~~~ie~~~~~~~~~~~~--~~--g~~~ 138 (430)
T PRK14319 69 GVLPTPALALITKLED-AAGVMISASHNPPEYNGLKVLM-RGYKLPDE----VEERIEKEMNEIHYSPYN--EV--GCVI 138 (430)
T ss_pred CCcCcHHHHHHHhccC-ceEEEEEeCCCChHHCCEEEec-CCCCCCHH----HHHHHHHHHhccCCcccc--cC--eeEE
Confidence 9999999999766554 4999999999999999999995 89988754 3445544321100 1111 11 2222
Q ss_pred CCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCc
Q psy1654 192 CPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEP 271 (459)
Q Consensus 192 ~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~ 271 (459)
. ..+..+.|++++++.++. ++.+++||||||+||+++.+++.+|++|||++ +. +|++|||.|++ +.|.|
T Consensus 139 ~-~~~~~~~Y~~~l~~~~~~---~~~~~~kvvvD~~nGa~~~~~~~ll~~Lg~~v-~~--ln~~~dg~~~~-~~~~~--- 207 (430)
T PRK14319 139 D-YKLAFEEYFNYIKQQYEG---LDLSGIKIVVDVANGATYELNPYILEYFGAKV-EV--VNNTPDGFNIN-VDCGS--- 207 (430)
T ss_pred e-ccchHHHHHHHHHHhcCc---cccCCCEEEEECCCChHHHHHHHHHHHcCCEE-EE--ECCCCCCCCCC-CCCCC---
Confidence 1 235678999999998752 34578999999999999999999999999984 34 49999999876 22333
Q ss_pred hhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccch
Q psy1654 272 SSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSS 351 (459)
Q Consensus 272 ~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss 351 (459)
.+++.+.+.+. ++|+|+++||||||+.++| ++| +++++|++++|+++++++..+. + ...||.|+.||
T Consensus 208 ~~~~~l~~~v~--~~dlGia~DgDaDR~~~vd--~~G--~~i~~d~~~~l~a~~ll~~~~~--~-----~~~vV~~v~ss 274 (430)
T PRK14319 208 THPENAKEKIT--NHKIAILHDGDGDRCIFLD--EKG--QEFHGDKIIGLTAKHLKKEGRL--K-----NDVVVGTILSN 274 (430)
T ss_pred CCHHHHHHHHH--hcCEEEEEcCCCceEEEEC--CCC--CEeChhHHHHHHHHHHHHhCCC--C-----CCeEEEeecCc
Confidence 34555666663 4699999999999999999 489 7899999999999998774211 1 12489999999
Q ss_pred HHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCCCH
Q psy1654 352 KILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDL 431 (459)
Q Consensus 352 ~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~L 431 (459)
.+++++++++|+++++||||+++++++|.+. +++||||+|||++|++|.+++|||+++++++|+|+. ++++|
T Consensus 275 ~~~~~~~~~~g~~v~~t~~G~~~i~~~m~~~-----~~~~ggE~sG~~~f~~~~~~~Dgi~a~l~lle~l~~---~~~~l 346 (430)
T PRK14319 275 MGLEVFLKNNGIKVVRTKVGDRYVLEEMLKL-----NATLGGERSGHIIYLDKSTTGDGLITALETLSVMVK---SGKKL 346 (430)
T ss_pred hHHHHHHHHCCCcEEEeCCchHHHHHHHHHc-----CCEEEEcccceEEEhhccCCCcHHHHHHHHHHHHHH---hCCCH
Confidence 9999999999999999999999999999753 589999999999999999999999999999999984 89999
Q ss_pred HHHHHHHHHhcccccCccc
Q psy1654 432 HQLLADVYDKGNCITGGFI 450 (459)
Q Consensus 432 s~ll~~lp~~y~~~~~~~~ 450 (459)
+++++++|. |...+..+.
T Consensus 347 s~l~~~~p~-~~~~~~~v~ 364 (430)
T PRK14319 347 SDLSNEIPD-YPQVMINVK 364 (430)
T ss_pred HHHHhhccc-cceeeEEEE
Confidence 999999997 444444443
No 32
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=100.00 E-value=4.5e-68 Score=553.33 Aligned_cols=372 Identities=23% Similarity=0.294 Sum_probs=304.2
Q ss_pred ccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCC
Q psy1654 34 KFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSR 113 (459)
Q Consensus 34 ~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g 113 (459)
+|||+||||++ + +|||+++.++|+|||+++++.. .++.|+||||+|.+|++|++++++||+++|+ +|+++ |
T Consensus 1 ~Fgt~GiRG~~-~---~ltpe~~~~l~~a~~~~l~~~~---~~~~VvVG~D~R~~s~~l~~a~~~gL~~~Gv-~V~~~-g 71 (459)
T cd03088 1 KFGTSGLRGLV-T---DLTDEVCYAYTRAFLQHLESKF---PGDTVAVGRDLRPSSPRIAAACAAALRDAGF-RVVDC-G 71 (459)
T ss_pred CCCCcccceee-c---cCCHHHHHHHHHHHHHHHHHhC---CCCeEEEEeCCCcchHHHHHHHHHHHHHCCC-EEEEe-C
Confidence 59999999999 4 7999999999999999997532 1457999999999999999999999999999 99999 9
Q ss_pred CccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccCCCCCCC
Q psy1654 114 VCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQIQPCP 193 (459)
Q Consensus 114 ~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~~~~~~~ 193 (459)
.+|||+++|+++++++ +||||||||||++||||||++++| ++.++.+++|++.+++ +. ...+. .++.+...
T Consensus 72 ~~pTP~~~~a~~~~~~-ggI~ITaSHnp~~~nGiK~~~~~G-~~~~~~e~~I~~~~~~-~~--~~~~~--~~~~~~~~-- 142 (459)
T cd03088 72 AVPTPALALYAMKRGA-PAIMVTGSHIPADRNGLKFYRPDG-EITKADEAAILAALVE-LP--EALFD--PAGALLPP-- 142 (459)
T ss_pred CCCCHHHHHHHHHcCC-cEEEEeCCCCCCCCCCEEEECCCC-CCChHHHHHHHHHHHh-hc--ccccc--ccccCCcc--
Confidence 9999999999999976 899999999999999999999999 5665544444433221 10 01111 11101121
Q ss_pred cchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCchh
Q psy1654 194 LDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSS 273 (459)
Q Consensus 194 ~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~ 273 (459)
..+..+.|+++|.+.++. . +.+++||||||+||+++.+++++|++|||++ +. +++.|+ |+. +.|+|..+++
T Consensus 143 ~~~~~~~Y~~~l~~~i~~-~--~~~~lkIvvD~~~G~~~~~~~~ll~~lG~~v-~~--l~~~~~--~~~-~~~~~~~~~~ 213 (459)
T cd03088 143 DTDAADAYIARYTDFFGA-G--ALKGLRIGVYQHSSVGRDLLVRILEALGAEV-VP--LGRSDT--FIP-VDTEAVRPED 213 (459)
T ss_pred cchHHHHHHHHHHHHhCc-c--ccCCCEEEEECCCCCHHHHHHHHHHHcCCeE-EE--eCCCCC--CCC-CCCCcCCHHH
Confidence 246789999999988762 2 2268999999999999999999999999985 33 366554 443 2344443578
Q ss_pred HHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccchHH
Q psy1654 274 LDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKI 353 (459)
Q Consensus 274 l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss~~ 353 (459)
++.+.+.+++.++|+|+++||||||++++| ++| +++++|++++|+++++.. ..||.|+.||.+
T Consensus 214 l~~l~~~v~~~~adlGia~D~DgDR~~vvd--~~G--~~i~~d~l~~l~~~~~~~-------------~~Vv~~v~ss~~ 276 (459)
T cd03088 214 RALAAAWAAEHGLDAIVSTDGDGDRPLVAD--ETG--EWLRGDILGLLTARFLGA-------------DTVVTPVSSNSA 276 (459)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCceeEC--CCC--CEECchHHHHHHHHHhCC-------------CEEEEccCCcHH
Confidence 999999999999999999999999999998 589 559999999999887521 148999999999
Q ss_pred HHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCC----------CcccCcHHHHHHHHHHHHHH
Q psy1654 354 LHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGT----------HVLDKDGVTAAVRMAELVAY 423 (459)
Q Consensus 354 l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~----------~~~~~Dgi~a~l~ile~la~ 423 (459)
+++++. ++++++|||||++|+++|.+..+.+..+++|+|+|||++|++ |.+++|||+++++++|+++
T Consensus 277 i~~~~~--~~~~~~t~vG~~~i~~~m~~~~~~~~~~~~g~E~sg~~~~~~~~~~~~~~~~~~~~~Dgi~a~l~ile~l~- 353 (459)
T cd03088 277 IELSGF--FKRVVRTRIGSPYVIAAMAEAAAAGAGRVVGYEANGGFLLGSDIERNGRTLKALPTRDAVLPILAVLAAAK- 353 (459)
T ss_pred HHHcCC--ceeEEECCCccHHHHHHHHHHHhcCCceEEEEecccceeccchhhccccccccCCCccHHHHHHHHHHHHH-
Confidence 998875 589999999999999999876554445899999999999885 5689999999999999998
Q ss_pred HHhCCCCHHHHHHHHHHhcccccCccc-CCCCc
Q psy1654 424 LDSQGKDLHQLLADVYDKGNCITGGFI-DPKSK 455 (459)
Q Consensus 424 ~~~~~~~Ls~ll~~lp~~y~~~~~~~~-~~~~~ 455 (459)
.++++|++++++||++|++ +..+. |||..
T Consensus 354 --~~~~~Ls~ll~~l~~~~~~-~~~i~~~~~~~ 383 (459)
T cd03088 354 --EAGIPLSELVASLPARFTA-SDRLQNFPTEK 383 (459)
T ss_pred --hcCCCHHHHHHHHhhcceE-hhccccCCHHH
Confidence 4899999999999999987 45565 89864
No 33
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=6.4e-59 Score=470.37 Aligned_cols=311 Identities=29% Similarity=0.379 Sum_probs=264.8
Q ss_pred ccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCC
Q psy1654 34 KFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSR 113 (459)
Q Consensus 34 ~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g 113 (459)
+||++||||++|+ +|||+++.++|+|||++
T Consensus 1 ~fg~~gi~G~~n~---~itpe~~~~lg~a~g~~----------------------------------------------- 30 (355)
T cd03084 1 IFGTSGVRGVVGD---DITPETAVALGQAIGST----------------------------------------------- 30 (355)
T ss_pred CCcccCcccccCC---cCCHHHHHHHHHHHhcc-----------------------------------------------
Confidence 5999999999998 89999999999999874
Q ss_pred CccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhcc-CCCCCC
Q psy1654 114 VCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIR-DQIQPC 192 (459)
Q Consensus 114 ~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~-~~~~~~ 192 (459)
|||||||||||++||||||++++|.+++++. +++|++.+.. +++.+.... .+....
T Consensus 31 -----------------gGI~ITaSHnp~~~nGiK~~~~~G~~i~~~~----~~~Ie~~~~~--~~~~~~~~~~~~~~~~ 87 (355)
T cd03084 31 -----------------GGIMITASHNPPEDNGIKFVDPDGEPIASEE----EKAIEDLAEK--EDEPSAVAYELGGSVK 87 (355)
T ss_pred -----------------eeEEEEeCCCChhHCcEEEecCCCCcCCHHH----HHHHHHHHhc--ccccccccccCCCeEE
Confidence 8999999999999999999999999998653 4455554321 122211100 011111
Q ss_pred CcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCch
Q psy1654 193 PLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPS 272 (459)
Q Consensus 193 ~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~ 272 (459)
..++.+.|++++.+.++ .+.++.+++||+|||+||+++.+++++|++|||++ +. +|+.|||.||. +.|+|..++
T Consensus 88 -~~~~~~~Y~~~l~~~i~-~~~i~~~~~kvvvD~~~G~~~~~~~~ll~~lg~~v-~~--~n~~~d~~F~~-~~p~p~~~~ 161 (355)
T cd03084 88 -AVDILQRYFEALKKLFD-VAALSNKKFKVVVDSVNGVGGPIAPQLLEKLGAEV-IP--LNCEPDGNFGN-INPDPGSET 161 (355)
T ss_pred -EcCCHHHHHHHHHHhcC-hhhhccCCCEEEEECCCchHHHHHHHHHHHcCCcE-EE--EcCcCCCCCCC-CCCCCCchh
Confidence 24678999999999887 45567789999999999999999999999999984 33 59999999987 468888778
Q ss_pred hHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccchH
Q psy1654 273 SLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSK 352 (459)
Q Consensus 273 ~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss~ 352 (459)
+++.+.+.|++.++|+|+++||||||+.++|+ +| +++++|++++|+++++++.. .+ +..||.|+.||+
T Consensus 162 ~l~~l~~~v~~~~adlG~a~DgDgDRl~~vd~--~G--~~l~~d~~~al~~~~l~~~~---~~-----~~~vv~~v~ss~ 229 (355)
T cd03084 162 NLKQLLAVVKAEKADFGVAFDGDADRLIVVDE--NG--GFLDGDELLALLAVELFLTF---NP-----RGGVVKTVVSSG 229 (355)
T ss_pred hHHHHHHHHHhcCCCEEEEEcCCCceeEEECC--CC--ceeCHhHHHHHHHHHHHHhc---CC-----CCCEEEEccchH
Confidence 99999999999999999999999999999994 78 78999999999999987541 11 124899999999
Q ss_pred HHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCCCHH
Q psy1654 353 ILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLH 432 (459)
Q Consensus 353 ~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~Ls 432 (459)
+++++|+++|++|+|||||+++++++|.+ .++++|||+|||++|+.+.+++|||+++++++|+++. ++++|+
T Consensus 230 ~i~~ia~~~g~~v~~t~~G~~~i~~~m~~-----~~~~~ggE~sg~~~~~~~~~~~Dgi~a~l~~le~la~---~~~~Ls 301 (355)
T cd03084 230 ALDKVAKKLGIKVIRTKTGFKWVGEAMQE-----GDVVLGGEESGGVIFPEFHPGRDGISAALLLLEILAN---LGKSLS 301 (355)
T ss_pred HHHHHHHHcCCcEEEecCcHHHHHHHHHh-----cCceEEecCcCCEEECCcCCCCCHHHHHHHHHHHHHH---hCCCHH
Confidence 99999999999999999999999999865 2689999999999999999999999999999999985 789999
Q ss_pred HHHHHHHHhcc
Q psy1654 433 QLLADVYDKGN 443 (459)
Q Consensus 433 ~ll~~lp~~y~ 443 (459)
++++++|..|.
T Consensus 302 ~l~~~~p~~~~ 312 (355)
T cd03084 302 ELFSELPRYYY 312 (355)
T ss_pred HHHHHhhHhcc
Confidence 99999997654
No 34
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=2.3e-44 Score=376.29 Aligned_cols=297 Identities=15% Similarity=0.096 Sum_probs=236.4
Q ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCC
Q psy1654 75 KESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKG 154 (459)
Q Consensus 75 ~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G 154 (459)
++.+|+||||+|++|++|++++++||.+.|+ +|+++ |.+|||+++|+++++++.| .+ +
T Consensus 101 ~~~~V~vg~D~R~ss~~l~~a~~~gl~~~G~-~V~d~-g~~~TP~~~~~v~~~~~~g-----------~~---------~ 158 (513)
T cd03086 101 VPANVFVGRDTRPSGPALLQALLDGLKALGG-NVIDY-GLVTTPQLHYLVRAANTEG-----------AY---------G 158 (513)
T ss_pred CCCEEEEEeCCChhHHHHHHHHHHHHHHCCC-eEEEc-cCcCcHHHHHHHHhcCCCC-----------cc---------C
Confidence 3678999999999999999999999999999 99999 9999999999999998875 00 0
Q ss_pred CccCCcchHHHHHHHHhhccccccccchhhccCCCCCCCcchHHHHHHHHHHhc----ccccCccCCCCceEEEeCCCCC
Q psy1654 155 CQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQIQPCPLDSVLEKYGQSVLDG----AYDLGLNEKSQVVITYSAMHGV 230 (459)
Q Consensus 155 ~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~l~~~----~~~~~~~~~~~~kVvvD~~~G~ 230 (459)
. . . .+.|+++|... ++....++.+++||||||+||+
T Consensus 159 ~-~---~------------------------------------~~~Y~~~l~~~f~~lv~~~~~~~~~~~kVvvD~aNGa 198 (513)
T cd03086 159 E-P---T------------------------------------EEGYYEKLSKAFNELYNLLQDGGDEPEKLVVDCANGV 198 (513)
T ss_pred C-c---c------------------------------------HHHHHHHHHHHHHHHHhhccccccCCCEEEEECCCcH
Confidence 0 0 0 01133333222 2212234568899999999999
Q ss_pred CHHHHHHHHHHcC--CCCeEEeccccccCCCCCCCCCCCCCCchhHHHHHHHHHhcC----CcEEEEeCCCCCeEEEEEe
Q psy1654 231 GYPYVNQLFKLFK--FKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQHG----STVILANDPDADRLAVAEK 304 (459)
Q Consensus 231 ~~~~~~~ll~~LG--~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v~~~~----adlGia~D~DgDRl~vvd~ 304 (459)
++.+++++|++|| |++ +. +|++|||.|. .|+|-.+++++.+++.+++.+ +|+|+++||||||++++|+
T Consensus 199 g~~~~~~ll~~Lg~~~~v-~~--in~~~dg~~~---~n~~~ga~~l~~l~~~v~~~~~~~~adlgiA~DGDADRl~~vd~ 272 (513)
T cd03086 199 GALKLKELLKRLKKGLSV-KI--INDGEEGPEL---LNDGCGADYVKTKQKPPRGFELKPPGVRCCSFDGDADRLVYFYP 272 (513)
T ss_pred HHHHHHHHHHHcCCCcEE-EE--EccCCCCccc---CCCCcccccHHHHHHHHHhcCCCCCccEEEEECCCCCcEEEEEe
Confidence 9999999999999 974 44 4999999862 233333568888988888876 9999999999999999997
Q ss_pred cCCCCeEEecCchhhHHHHHHHHHHhhhcCC-CCCCCCceEEEeccchHHHHHHHHH-cCCcEEEecccceeccccchHH
Q psy1654 305 AKDGQWKIFTGNELGALFGWWALHRLKSKQP-NAPLQDYYFLASTVSSKILHTIAQA-EGLKYDETLTGFKWMGTKTYDL 382 (459)
Q Consensus 305 ~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~-~~~~~~~~vv~~~~ss~~l~~ia~~-~g~~v~~t~~G~~~i~~~~~~~ 382 (459)
+.+|+|++++||++++|+++++++..+..++ +. . +..||.|+.|+..+.++.++ +|+++++|+||++|+.++|++.
T Consensus 273 ~g~~~~~~l~GD~i~aL~a~~ll~~~~~~~~~~~-~-~~~VV~tv~sn~~~~~~l~~~~G~~~~~t~vG~k~v~~~m~e~ 350 (513)
T cd03086 273 DSSNKFHLLDGDKIATLFAKFIKELLKKAGEELK-L-TIGVVQTAYANGASTKYLEDVLKVPVVCTPTGVKHLHHAAEEF 350 (513)
T ss_pred cCCCceEEECHHHHHHHHHHHHHHhccccCCCCC-C-CcEEEEEeccchHHHHHHHHHcCceEEEeCCcHHHHHHHHHHh
Confidence 6567999999999999999999875221011 11 1 23589999999999988888 9999999999999999999764
Q ss_pred hhcCCeEEEEEecCCc--cccCCC------------------------------cccCcHHHHHHHHHHHHHHHHhCCCC
Q psy1654 383 EQEGKHVLLAFEEAIG--FMDGTH------------------------------VLDKDGVTAAVRMAELVAYLDSQGKD 430 (459)
Q Consensus 383 ~~~~~~~~l~~E~sgg--~~~~~~------------------------------~~~~Dgi~a~l~ile~la~~~~~~~~ 430 (459)
++.+|||+||| ++|+.+ .+++|||+++++++++++. .+++
T Consensus 351 -----~~~~ggE~sGHgtvif~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~gDgi~~al~vl~~l~~---~~~~ 422 (513)
T cd03086 351 -----DIGVYFEANGHGTVLFSESALAKIEENSSLSDEQEKAAKTLLAFSRLINQTVGDAISDMLAVELILAA---LGWS 422 (513)
T ss_pred -----CcceEEeccCCEEEEECchHHhhhhhhccccchhhhHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHH---hCCC
Confidence 57899999999 899987 5589999999999999984 7999
Q ss_pred HHHHHHHHHHhcccccCccc
Q psy1654 431 LHQLLADVYDKGNCITGGFI 450 (459)
Q Consensus 431 Ls~ll~~lp~~y~~~~~~~~ 450 (459)
|+++++.++. |...+..+.
T Consensus 423 lsel~~~y~~-~p~~~~~v~ 441 (513)
T cd03086 423 PQDWDNLYTD-LPNRQLKVK 441 (513)
T ss_pred HHHHHhhchh-cCeeeeEEE
Confidence 9999997664 433333333
No 35
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-44 Score=353.10 Aligned_cols=393 Identities=20% Similarity=0.180 Sum_probs=302.7
Q ss_pred cCCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEE
Q psy1654 30 LKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVF 109 (459)
Q Consensus 30 ~~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~ 109 (459)
.+..+|||+|.||...+. ..||..+..+.||+..++.+++. +..++||+|+|.-|+...+.++++|.++|+ +++
T Consensus 13 ~~~~k~GTSG~R~~~~~~--~fne~~i~a~~Qai~d~~~~~~~---~~~L~vG~D~~~~se~a~~~~lev~aANgv-~~i 86 (524)
T COG0033 13 YQDVKFGTSGHRGSALVF--TFNENHILAFIQAIADYRAEGGI---GGPLVVGGDTHALSEPAIQSALEVLAANGV-EVI 86 (524)
T ss_pred hhhcCCCCccccCccccC--ccCHHHHHHHHHHHHHHHhccCC---CCceEECCCcccccHHHHHHHHHHHHhcCc-eEE
Confidence 456899999999999884 56899999999999999987653 678999999999999999999999999999 876
Q ss_pred Ec--CCCccchhHHHHHH----HhcCCe-EEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccc----c
Q psy1654 110 LV--SRVCPTPIIAYSIR----ALNLAL-GIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIED----H 178 (459)
Q Consensus 110 ~~--~g~~ptP~~~~av~----~~~~~g-Gi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~----~ 178 (459)
.. .|.+|||.++++++ +.++.+ ||+||+|||||+..|||+..++|+|-. +++++.|++...... .
T Consensus 87 v~~~~g~~~TPAaSh~I~t~n~k~k~~~~GIvlT~SHNPP~D~GIKYN~~nGGPA~----~~~T~aI~~ra~~~~k~~~~ 162 (524)
T COG0033 87 VQGQGGFTPTPAASHAILTHNGKYKALADGIVLTPSHNPPEDGGIKYNPPNGGPAP----EKVTDAIEARANDLYKIGLL 162 (524)
T ss_pred EecCCCccCchHHHHHHHhhcccccccCCeEEEcCCCCCcccCCcccCCCCCCCCC----hHHHHHHHHHHHHHHHhhhc
Confidence 65 47999999999999 555544 599999999999999999999999754 557777766522100 1
Q ss_pred ccchhhccC--CCCCCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEecccccc
Q psy1654 179 IWNIDRIRD--QIQPCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSP 256 (459)
Q Consensus 179 ~~~~~~~~~--~~~~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~p 256 (459)
+.++..... +.......|....|++.|.+.+| .+.|++...++++|+++|++..++.+|+++-.... ..+..|..|
T Consensus 163 ~v~r~~~~~~~~~~~v~~~D~v~~Yv~~l~~i~D-~daIr~~~~~l~~D~l~g~t~~Y~~~I~e~~~~~~-t~v~~~~~p 240 (524)
T COG0033 163 DVKRIGLDQAYGSLTVKIIDPVKDYVELLEEIFD-FDAIRKAGLRLGFDPLGGVTGPYWKAIAEKYLLNL-TGVNQNVDP 240 (524)
T ss_pred CccccchhhhcCcceeeeecchHHHHHHHHHhhc-HHHHHHHHhhcccccccCccchhHHHHHHHhcCCc-hhhccCccc
Confidence 112111000 11111146889999999999999 58888889999999999999999999997644332 244458899
Q ss_pred CCCCCCCCCCCCCC---chhHHHHHHHHH-hcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhh
Q psy1654 257 DPEFPTVRFPNPEE---PSSLDLAVKTAD-QHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKS 332 (459)
Q Consensus 257 d~~f~~~~~p~p~~---~~~l~~~~~~v~-~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~ 332 (459)
.+.|.+ ++|+|+. ..+-..+..+++ +...|||++-|+||||-+++.+ .. -+++|+..+++++.|+... +.
T Consensus 241 ~~~F~~-l~~D~ni~~~~ss~~~ma~l~~~~d~~d~~aanD~DgDR~~Iv~~--~~--~~~nPn~~lAv~~~y~~~~-~~ 314 (524)
T COG0033 241 TPDFMG-LDPDGNIRMDCSSPCAMAGLLRLRDKYDFAAANDGDGDRHGIVTP--GA--GLMNPNHSLAVAIEYLFLH-RP 314 (524)
T ss_pred CccccC-CCCCCCEeEecCcHHHHHHhhccccccccccccCCCcccceeecC--CC--cccCchHHHHHHHHHHHhC-CC
Confidence 999998 5688876 221112333333 3789999999999999999985 32 3799999999999997654 22
Q ss_pred cCCCCCCCCceEEEeccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHH
Q psy1654 333 KQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVT 412 (459)
Q Consensus 333 ~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~ 412 (459)
.+.+ ...|..+++||.++|++++++|.++++|||||||..+-+.. +.+-||||||- -.+|.+++|++|
T Consensus 315 ~~~g----~~~v~ktl~sS~~iDRV~~~lGr~lyEvPvG~K~F~~~l~~-----g~~~~~GEESa---Ga~~lRek~g~W 382 (524)
T COG0033 315 YWGG----IVAVGKTLVSSAAIDRVVAKLGRGLYEVPVGFKWFVDGLDA-----GSFGFGGEESA---GASFLREKGGVW 382 (524)
T ss_pred cccc----ceeeeeccccHHHHHHHHHHhCCceEEcCCcceeeeccccc-----cceeecccccc---cccceecCCCce
Confidence 2222 23578899999999999999999999999999999887642 37889999993 346788899999
Q ss_pred HHHHHHHHHHHHH-----hCCCCHHHHHHHHHHhcc-cccCcccCC
Q psy1654 413 AAVRMAELVAYLD-----SQGKDLHQLLADVYDKGN-CITGGFIDP 452 (459)
Q Consensus 413 a~l~ile~la~~~-----~~~~~Ls~ll~~lp~~y~-~~~~~~~~~ 452 (459)
+.++++-+|+-++ +.++.-++..+++-.+|+ +-+..+.||
T Consensus 383 a~~~~~~Ilall~aei~a~t~~~~~~~y~~~~r~~~~~~Yervda~ 428 (524)
T COG0033 383 ATDKDGNILALLAAEITAVTGKIPQEHYAELGRNFGRPDYERVDAE 428 (524)
T ss_pred eeechhHHHHHHhhhchhhhccCHHHHHHHHHHHhCcccHHHhcCc
Confidence 9888888887654 345667777777766654 444455544
No 36
>KOG0625|consensus
Probab=100.00 E-value=1.4e-43 Score=341.64 Aligned_cols=388 Identities=23% Similarity=0.286 Sum_probs=302.0
Q ss_pred CcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 32 RLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 32 ~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
-.+-||+|+|.++.+ ...|.....+-||+-..++.. ..++.+.|||.|+|+.+....+.+++.-+++|+ .-+.+
T Consensus 15 gQKpGTSGLRKkvkv---F~qpnY~eNfvQa~~~a~~~~--~~kgatLVVGGDGRyy~~~a~~~I~~iaAaNGv-~rliv 88 (558)
T KOG0625|consen 15 GQKPGTSGLRKKVKV---FKQPNYTENFVQAIMNALPGE--KSKGATLVVGGDGRYYNKEAIQIIAKIAAANGV-GRLIV 88 (558)
T ss_pred CCCCCccchhhccee---ecCCchHHHHHHHHHhccccc--cccCceEEEcCCCcchhHHHHHHHHHHHhhcCc-ceEEe
Confidence 477899999999998 667888889999998877522 224789999999999999999999999999999 54445
Q ss_pred --CCCccchhHHHHHHHh-cCCeEEEEeCCCCC---CCCCceeeEcCCCCccCCcchHHHHHHHHhhcccccc-------
Q psy1654 112 --SRVCPTPIIAYSIRAL-NLALGIMITASHNP---KEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDH------- 178 (459)
Q Consensus 112 --~g~~ptP~~~~av~~~-~~~gGi~ITaShnp---~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~------- 178 (459)
.|..+||+++..++++ .+.|||+.|||||| .+.-||||..+||+|-+ +.+.++|.+......+
T Consensus 89 GqnGiLSTPAvS~iIRk~~ka~GGiILTASHnPGGP~~DfGIKfN~~NGgPAP----esvTdkIy~itk~i~eyki~~~~ 164 (558)
T KOG0625|consen 89 GQNGILSTPAVSCIIRKYIKAGGGIILTASHNPGGPEGDFGIKFNLENGGPAP----ESVTDKIYEITKTISEYKIAKDP 164 (558)
T ss_pred ccCCcccchHHHHHHHhhcccCceEEEEeccCCCCCCCccceEEecCCCCCCh----HHHHHHHHHhhhhhhhceeecCc
Confidence 4799999999999998 67788999999998 46679999999999753 5588888766432100
Q ss_pred ccchhhccC----CCCCCCcchHHHHHHHHHHhcccccCc-----cCCCCceEEEeCCCCCCHHHHHHHH-HHcCCCCeE
Q psy1654 179 IWNIDRIRD----QIQPCPLDSVLEKYGQSVLDGAYDLGL-----NEKSQVVITYSAMHGVGYPYVNQLF-KLFKFKPLV 248 (459)
Q Consensus 179 ~~~~~~~~~----~~~~~~~~~~~~~Y~~~l~~~~~~~~~-----~~~~~~kVvvD~~~G~~~~~~~~ll-~~LG~~~~~ 248 (459)
..+-...+. +-......|..++|++.+.+.+|. ++ ...+++|+.+|+|||+++.+...|| ++||+..
T Consensus 165 ~iDls~vG~~~~~gpf~VeviDpv~~Yv~lmk~IFDF-~~ik~lls~~~~~k~~~DamhGvtGpY~~~IfvdelGa~~-- 241 (558)
T KOG0625|consen 165 KIDLSTVGKTSFDGPFTVEVIDPVKDYVNLMKEIFDF-DLIKSLLSGPKKLKFRFDAMHGVTGPYVKAIFVDELGAPA-- 241 (558)
T ss_pred ccchhhhccccccCCeeEEEeccHHHHHHHHHHHhCH-HHHHHHhcCCCCceEEEeecccccchhhhHHHHhhhCCCh--
Confidence 111111110 111112468899999999998874 22 2347899999999999999999998 8999986
Q ss_pred EeccccccCCCCCCCCCCCCCCchhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHH
Q psy1654 249 LVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALH 328 (459)
Q Consensus 249 ~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~ 328 (459)
....||.|-++|++ .+|+|+... -..|-+.+...+.|||.|+||||||-++.-. +| .+++|..-.+++|.++..
T Consensus 242 ~~~~n~~Pl~DFGG-~HPDPNLTY-Ak~LV~rv~~~~~~fGAA~DGDGDRNMIlG~--~~--fFVtPsDSvAiIA~na~~ 315 (558)
T KOG0625|consen 242 SSLQNCVPLEDFGG-GHPDPNLTY-AKDLVDRVDRGEIDFGAAFDGDGDRNMILGK--NG--FFVTPSDSVAIIAANAEA 315 (558)
T ss_pred HHhccCeeccccCC-CCCCCchhh-HHHHHHHhccCCCcccccccCCCcceeeecc--Cc--eeeccchhHHHHHhcchh
Confidence 33459999999998 579998632 2334455677899999999999999988874 67 678888888888877532
Q ss_pred --HhhhcCCCCCCCCceEEEeccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcc
Q psy1654 329 --RLKSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVL 406 (459)
Q Consensus 329 --~~~~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~ 406 (459)
.+++.+ ++ .+..++.+|.++|.+|++.|.++++||||||+..+.|. + +++-++||||.|- -++|.+
T Consensus 316 IPYF~~~G----v~--GfARSmPTs~AlDrVak~~gl~~yEvPTGWKfF~nLmD----A-gklsiCGEESFGT-GSdHIR 383 (558)
T KOG0625|consen 316 IPYFRKQG----VK--GFARSMPTSGALDRVAKKLGLPVYEVPTGWKFFGNLMD----A-GKLSICGEESFGT-GSDHIR 383 (558)
T ss_pred cchhhhcC----cc--hhhhcCCchhHHHHHHHHcCCceEEcCchHHHHHhhhc----c-cceeecccccccC-Cccccc
Confidence 222211 22 25678889999999999999999999999999988764 3 3688999999553 346899
Q ss_pred cCcHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCcccCCCCc
Q psy1654 407 DKDGVTAAVRMAELVAYLDSQGKDLHQLLADVYDKGNCITGGFIDPKSK 455 (459)
Q Consensus 407 ~~Dgi~a~l~ile~la~~~~~~~~Ls~ll~~lp~~y~~~~~~~~~~~~~ 455 (459)
++||+||+|.||.+||. .+++ .+.+++.+.|.+|| +++-|.|-.
T Consensus 384 EKDGiWAvlaWlsIlA~-~k~~-~vedI~~~~W~~YG---R~fftRYDY 427 (558)
T KOG0625|consen 384 EKDGIWAVLAWLSILAH-NKQN-VVEDIVKEHWAKYG---RNFFTRYDY 427 (558)
T ss_pred cccchhhHHHHHHHHHh-cccc-cHHHHHHHHHHHhC---ccceeecch
Confidence 99999999999999995 2222 39999999999999 666666543
No 37
>PLN02895 phosphoacetylglucosamine mutase
Probab=100.00 E-value=8.8e-38 Score=325.64 Aligned_cols=286 Identities=16% Similarity=0.186 Sum_probs=220.4
Q ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCC
Q psy1654 76 ESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGC 155 (459)
Q Consensus 76 ~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~ 155 (459)
...|+||||+|+||+.|+++++.||.+.|+ +|+++ |.+|||+++|+++..+.. |.
T Consensus 127 ~~~V~vG~DtR~Ss~~l~~a~~~gl~~~G~-~v~d~-G~~tTP~l~~~v~~~n~~-----------------------~~ 181 (562)
T PLN02895 127 PAEVLLGRDTRPSGPALLAAALKGVRAIGA-RAVDM-GILTTPQLHWMVRAANKG-----------------------MK 181 (562)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHHCCC-CEEEe-CcCCcHHHHHHHHhcCCC-----------------------CC
Confidence 468999999999999999999999999999 99999 999999999999866531 11
Q ss_pred ccCCcchHHHHHHHHhhccccccccchhhccCCCCCCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHH
Q psy1654 156 QIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQIQPCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYV 235 (459)
Q Consensus 156 ~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~ 235 (459)
+ .++.-.+++.+.| ..|.+...........+.||+|||+||+++..+
T Consensus 182 ~----~e~~Y~~~l~~~f-----------------------------~~l~~~~~~~~~~~~~~~kvvVDcANGvg~~~~ 228 (562)
T PLN02895 182 A----TESDYFEQLSSSF-----------------------------RALLDLIPNGSGDDRADDKLVVDGANGVGAEKL 228 (562)
T ss_pred C----cHHHHHHHHHHHH-----------------------------HHHHhcCCCccccccCCCEEEEECCCcHHHHHH
Confidence 1 1111111221111 111111110011123347999999999999999
Q ss_pred HHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHHHHHHhcCC---cEE---EEeCCCCCeEEEEEecCCC-
Q psy1654 236 NQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQHGS---TVI---LANDPDADRLAVAEKAKDG- 308 (459)
Q Consensus 236 ~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v~~~~a---dlG---ia~D~DgDRl~vvd~~~~G- 308 (459)
+++++.||+.+ + ..+|+.|||.|. .|+|-....++.++ .+.+ ++ |+| ++|||||||+++++. +|
T Consensus 229 ~~l~~~Lg~~~-i-~~iN~~~dG~~~---lN~~cGad~v~~lq-~vp~-~~~~~d~G~~~~sfDGDADRlv~~d~--~g~ 299 (562)
T PLN02895 229 ETLKKALGGLD-L-EVRNSGKEGEGV---LNEGVGADFVQKEK-VPPT-GFASKDVGLRCASLDGDADRLVYFYV--SSA 299 (562)
T ss_pred HHHHHHCCCcE-E-EEeecCCCCCCC---CCCCCccCcHHHHH-hhhc-cCCccCCCCcceEEcCCCCEEEEEEc--CCC
Confidence 99999999875 3 124999998872 34555456777777 6666 77 899 999999999999996 55
Q ss_pred --CeEEecCchhhHHHHHHHHHHhhhcC------CC-CCCCCceEEEeccchHHHHHHHHH-cCCcEEEecccceecccc
Q psy1654 309 --QWKIFTGNELGALFGWWALHRLKSKQ------PN-APLQDYYFLASTVSSKILHTIAQA-EGLKYDETLTGFKWMGTK 378 (459)
Q Consensus 309 --~~~~~~~d~l~~L~a~~ll~~~~~~~------~~-~~~~~~~vv~~~~ss~~l~~ia~~-~g~~v~~t~~G~~~i~~~ 378 (459)
+|++++||++++|+|.++.+.++..+ +. ..+ +..||.|+.|+..+++++++ .|++|++||||+|+++++
T Consensus 300 ~~~~~llDGDkI~~L~A~~l~~~l~~~~~~~~~~~~~~~l-~~gVVqTayaNgast~yl~~~lg~~v~~t~tGvk~l~~~ 378 (562)
T PLN02895 300 GSKIDLLDGDKIASLFALFIKEQLRILNGNGNEKPEELLV-RLGVVQTAYANGASTAYLKQVLGLEVVCTPTGVKYLHEA 378 (562)
T ss_pred cccCeEeCHHHHHHHHHHHHHHHhhhcccccccccccccC-CCeEEEeccccHHHHHHHHHhcCCeEEEEeCchHHHHHH
Confidence 68899999999999999977543211 10 011 23599999999999999999 999999999999999999
Q ss_pred chHHhhcCCeEEEEEecCCc--cccCCCcc------------------------------------cCcHHHHHHHHHHH
Q psy1654 379 TYDLEQEGKHVLLAFEEAIG--FMDGTHVL------------------------------------DKDGVTAAVRMAEL 420 (459)
Q Consensus 379 ~~~~~~~~~~~~l~~E~sgg--~~~~~~~~------------------------------------~~Dgi~a~l~ile~ 420 (459)
|++. ++.++||.||| ++|+++.. .+|||+++++++++
T Consensus 379 a~e~-----digvyfEaNGHGTviFs~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~~~~linq~vGDai~~~L~vl~i 453 (562)
T PLN02895 379 AAEF-----DIGVYFEANGHGTVLFSERFLDWLEAAAAELSSKAKGSEAHKAARRLLAVSRLINQAVGDALSGLLLVEAI 453 (562)
T ss_pred HHhc-----CceEEEccCCCeEEEEChHHHHHHhhhhhccccccccchhhHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 9764 58899999988 88887654 69999999999999
Q ss_pred HHHHHhCCCCHHHHHHH
Q psy1654 421 VAYLDSQGKDLHQLLAD 437 (459)
Q Consensus 421 la~~~~~~~~Ls~ll~~ 437 (459)
|++ .+.+|+++++.
T Consensus 454 L~~---~~~sl~e~~~~ 467 (562)
T PLN02895 454 LQY---RGWSLAEWNAL 467 (562)
T ss_pred HHH---hCCCHHHHHhh
Confidence 985 79999999993
No 38
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=100.00 E-value=2.5e-37 Score=324.64 Aligned_cols=293 Identities=16% Similarity=0.155 Sum_probs=225.9
Q ss_pred CCeEEEEeCCCCChHHHHHHHHHHHH-hCCCcEEEEcCCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCC
Q psy1654 76 ESGIIVGYDGRHNSKRFAELTASVFL-NGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKG 154 (459)
Q Consensus 76 ~~~VvVg~D~R~~s~~l~~a~~~gL~-~~G~~~V~~~~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G 154 (459)
...|+||||+|+||++|++++++||+ +.|+ +|+++ |.+|||+++|+++..+..+ . .| |
T Consensus 152 ~~~V~vGrDtR~Ss~~L~~al~~gl~~~~G~-~v~d~-G~~tTP~l~y~v~~~n~~~-~---------~~---------~ 210 (585)
T PTZ00302 152 KAKVHVGRDTRPSSPELVSALLRGLKLLIGS-NVRNF-GIVTTPQLHFLVAFANGLG-V---------DV---------V 210 (585)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHhcCC-cEEEe-CCCCcHHHHHHHHHhCCCc-c---------cc---------C
Confidence 45799999999999999999999999 9999 99999 9999999999998875421 0 11 2
Q ss_pred CccCCcchHHHHHHHHhhccccccccchhhccCCCCCCCcchHHHHHHHHHHhcccccC---ccCCCCceEEEeCCCCCC
Q psy1654 155 CQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQIQPCPLDSVLEKYGQSVLDGAYDLG---LNEKSQVVITYSAMHGVG 231 (459)
Q Consensus 155 ~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~l~~~~~~~~---~~~~~~~kVvvD~~~G~~ 231 (459)
.+ .++.--+++...|. .|.+...... ......-+|+|||+||++
T Consensus 211 ~~----~e~~Y~~~~~~~f~-----------------------------~l~~~~~~~~~~~~~~~~~~kVvVD~ANGvg 257 (585)
T PTZ00302 211 ES----SDELYYAYLLAAFK-----------------------------ELYRTLQEGGPVDLTQNNSKILVVDCANGVG 257 (585)
T ss_pred CC----cHHHHHHHHHHHHH-----------------------------HHHhhCCccccccccccCCCeEEEECCCcHH
Confidence 21 11112222222211 1111111000 001223689999999999
Q ss_pred HHHHHHHHHHc---CCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHHHHHHhcCCcEE------EEeCCCCCeEEEE
Q psy1654 232 YPYVNQLFKLF---KFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQHGSTVI------LANDPDADRLAVA 302 (459)
Q Consensus 232 ~~~~~~ll~~L---G~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v~~~~adlG------ia~D~DgDRl~vv 302 (459)
+..++++++.| ||++ +. +|++||+.|. .++|-....++.+++.++..++|+| ++|||||||++++
T Consensus 258 ~~~~~~ll~~L~~~g~~v-~~--in~~~dg~~~---lN~~cGad~vk~lq~~p~~~~ad~G~~~~~~~sfDGDADRlv~~ 331 (585)
T PTZ00302 258 GYKIKRFFEALKQLGIEI-IP--ININCDEEEL---LNDKCGADYVQKTRKPPRAMKEWPGDEETRVASFDGDADRLVYF 331 (585)
T ss_pred HHHHHHHHHHhhhCCCEE-EE--EecCCCCCCC---CCCCCccccHHHHHHHHHhcCCCcCccCCeeEEECCCCCeEEEE
Confidence 99999999999 7763 33 4999998763 2444445789999999999999999 9999999999999
Q ss_pred Ee--cCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccchHHHHHHHHH-cC-CcEEEecccceecccc
Q psy1654 303 EK--AKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKILHTIAQA-EG-LKYDETLTGFKWMGTK 378 (459)
Q Consensus 303 d~--~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss~~l~~ia~~-~g-~~v~~t~~G~~~i~~~ 378 (459)
+. +.+++|++++||++++|+|.++.+..+..+++... +..||.|+.|+.++++++++ .| ++|.+||||.|+++++
T Consensus 332 d~~~~g~~~~~lldGDkI~~L~A~~l~~~l~~~~~~~~l-~igVVqTayaNgast~yl~~~lg~~~v~~t~tGvk~l~~~ 410 (585)
T PTZ00302 332 FPDKDGDDKWVLLDGDRIAILYAMLIKKLLGKIQLKKKL-DIGVVQTAYANGASTNYLNELLGRLRVYCAPTGVKNLHPK 410 (585)
T ss_pred EecCCCCccceecCHHHHHHHHHHHHHHHhhhcCCCCCc-cceEEEeccCCHHHHHHHHHhcCCeeEEEEeCchHHHHHH
Confidence 96 34568899999999999999987643221222111 22599999999999999999 89 9999999999999999
Q ss_pred chHHhhcCCeEEEEEecCCc--cccCC------------------------------CcccCcHHHHHHHHHHHHHHHHh
Q psy1654 379 TYDLEQEGKHVLLAFEEAIG--FMDGT------------------------------HVLDKDGVTAAVRMAELVAYLDS 426 (459)
Q Consensus 379 ~~~~~~~~~~~~l~~E~sgg--~~~~~------------------------------~~~~~Dgi~a~l~ile~la~~~~ 426 (459)
|.+. ++.++||.||| ++|++ +...+|||+.+++++++|+.
T Consensus 411 a~e~-----di~iyfEaNGHGTvif~~~~~~~~~~~~~~~~~~~~a~~~L~~~~~l~n~~vGDai~~~L~v~~iL~~--- 482 (585)
T PTZ00302 411 AHKY-----DIGIYFEANGHGTVLFNEKALAEWAKFLAKQNALNSACRQLEKFLRLFNQTIGDAISDLLAVELALAF--- 482 (585)
T ss_pred HHhc-----CCeEEEccCCCEEEEECcHHHhhhhhhccccchhhhHHHHHHHhHhhhcCCCccHHHHHHHHHHHHHh---
Confidence 9763 68999999998 88887 56779999999999999985
Q ss_pred CCCCHHHHHHH
Q psy1654 427 QGKDLHQLLAD 437 (459)
Q Consensus 427 ~~~~Ls~ll~~ 437 (459)
.+.+++++++.
T Consensus 483 ~~~sl~e~~~~ 493 (585)
T PTZ00302 483 LGLSFQDWLNL 493 (585)
T ss_pred hCCCHHHHHhh
Confidence 78999999994
No 39
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=100.00 E-value=1.3e-33 Score=247.16 Aligned_cols=132 Identities=36% Similarity=0.553 Sum_probs=112.0
Q ss_pred CcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 32 RLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 32 ~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
|.+||++||||+++++ +|||+++.++++|||+++.+.. ++++|+||||+|++|++++++++++|+++|+ +|+++
T Consensus 1 ~~~F~~~girG~~~~~--~lt~~~~~~~~~a~~~~~~~~~---~~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~-~V~~~ 74 (137)
T PF02878_consen 1 RVLFGTSGIRGIINVG--ELTPEFAARLAQAFASYLKEKG---NGSRVVVGRDTRPSSPMLAKALAAGLRANGV-DVIDI 74 (137)
T ss_dssp -CCBBTTSEEEECTHT--TBSHHHHHHHHHHHHHHHHHTT---TSSEEEEEE-SSTTHHHHHHHHHHHHHHTTE-EEEEE
T ss_pred CCccCCCCeeEEeCCC--CCCHHHHHHHHHHHHHhhcccC---CCCeEEEEEcccCCHHHHHHHHHHHHhhccc-ccccc
Confidence 4789999999999963 5999999999999999998852 2678999999999999999999999999999 99999
Q ss_pred CCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHH
Q psy1654 112 SRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIM 170 (459)
Q Consensus 112 ~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie 170 (459)
|.+|||+++|+++++++++||||||||||++||||||++++|.+++++..++|++.++
T Consensus 75 -g~~~tP~~~~~~~~~~~~ggi~iTaShnp~~~ngik~~~~~G~~~~~~~~~~I~~~~~ 132 (137)
T PF02878_consen 75 -GLVPTPALSFAIRQLNADGGIMITASHNPPGYNGIKFFDANGGPISPEEERKIEQIIE 132 (137)
T ss_dssp -EEB-HHHHHHHHHHHTESEEEEE--TTS-TTEEEEEEEETTSSB--HHHHHHHHHHHH
T ss_pred -cccCcHHhhhhccccccceeeEEEecCCCCCcceEEEEeCCCCcCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999997654444444443
No 40
>PF02880 PGM_PMM_III: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; InterPro: IPR005846 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain III found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B 3UW2_A 2F7L_B 3I3W_B 2Z0F_A ....
Probab=99.90 E-value=5.4e-24 Score=179.85 Aligned_cols=113 Identities=35% Similarity=0.431 Sum_probs=99.3
Q ss_pred cCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEE
Q psy1654 314 TGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAF 393 (459)
Q Consensus 314 ~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~ 393 (459)
+||++++|+++++++..+ ++ ..||.|+.||++++++|+++|+++++|||||+||.++|++. +++|||
T Consensus 1 ~gd~~~al~a~~~l~~~~---~~-----~~vv~~v~sS~~~~~~~~~~g~~~~~t~vG~~~i~~~~~~~-----~~~~gg 67 (113)
T PF02880_consen 1 NGDELLALLADYLLEEHK---PG-----GTVVVTVVSSRALDKIAEKHGGKVIRTKVGFKNIAEKMREE-----NAVFGG 67 (113)
T ss_dssp HHHHHHHHHHHHHHHCHT---TT-----EEEEEETTS-THHHHHHHHTTSEEEEESSSHHHHHHHHHHT-----TESEEE
T ss_pred CcHHHHHHHHHHHHHhCC---CC-----CEEEEeCHHHHHHHHHHHHCCCEEEEecCCcHHHHHHHhhh-----ceeEEe
Confidence 479999999999987522 11 25999999999999999999999999999999999998764 589999
Q ss_pred ecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q psy1654 394 EEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADVYDKG 442 (459)
Q Consensus 394 E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~Ls~ll~~lp~~y 442 (459)
|+||||+|+++++++|||+++++++++++. +|++|+++++++|++|
T Consensus 68 E~sgg~~~~~~~~~~Dgi~a~~~~l~~l~~---~~~~ls~ll~~l~~~Y 113 (113)
T PF02880_consen 68 EESGGFIFPDFSYDKDGIYAALLLLELLAE---EGKTLSELLDELPKKY 113 (113)
T ss_dssp ETTSEEEETTTESSE-HHHHHHHHHHHHHH---HTS-HHHHHHHHHHHH
T ss_pred cccCeEEecCCCCCCcHHHHHHHHHHHHHH---hCCCHHHHHHHHhccC
Confidence 999999999999999999999999999994 8999999999999987
No 41
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=99.84 E-value=7.6e-21 Score=158.28 Aligned_cols=104 Identities=35% Similarity=0.548 Sum_probs=88.5
Q ss_pred HHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHH
Q psy1654 199 EKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAV 278 (459)
Q Consensus 199 ~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~ 278 (459)
+.|+++|.+.++..+.++.+++||+|||+||+++.+++.||++|||++ +.+|+.||+.|++.+.|+|+. ++++.+.
T Consensus 1 e~Y~~~l~~~~~~~~~~~~~~~kivvD~~~G~~~~~~~~ll~~lg~~~---~~~n~~~d~~f~~~~~p~p~~-~~l~~~~ 76 (104)
T PF02879_consen 1 EAYIESLLSFIDILEAIKKSGLKIVVDCMNGAGSDILPRLLERLGCDV---IELNCDPDPDFPNQHAPNPEE-ESLQRLI 76 (104)
T ss_dssp HHHHHHHHHTSCHHHHHHHTTCEEEEE-TTSTTHHHHHHHHHHTTCEE---EEESSS-STTGTTTSTSSTST-TTTHHHH
T ss_pred ChHHHHHhhhccchhhcccCCCEEEEECCCCHHHHHHHHHHHHcCCcE---EEEeccccccccccccccccc-chhHHHH
Confidence 579999999887224456789999999999999999999999999974 336999999999855689987 7899999
Q ss_pred HHHHhcCCcEEEEeCCCCCeEEEEEecCCC
Q psy1654 279 KTADQHGSTVILANDPDADRLAVAEKAKDG 308 (459)
Q Consensus 279 ~~v~~~~adlGia~D~DgDRl~vvd~~~~G 308 (459)
+.+++.++|+|+++||||||++++|+ +|
T Consensus 77 ~~v~~~~ad~g~~~DgDaDRl~~vd~--~G 104 (104)
T PF02879_consen 77 KIVRESGADLGIAFDGDADRLGVVDE--NG 104 (104)
T ss_dssp HHHHHSTTSEEEEE-TTSSBEEEEET--TS
T ss_pred HHhhccCceEEEEECCcCceeEEECC--CC
Confidence 99999999999999999999999984 65
No 42
>KOG2537|consensus
Probab=99.65 E-value=7.9e-15 Score=146.85 Aligned_cols=262 Identities=18% Similarity=0.211 Sum_probs=165.7
Q ss_pred HHHHHHHHHHhhCCCC-CCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCccchhHHHHHHHhcCCeEEEEeC
Q psy1654 59 TGQGILSCAEKHIPNF-KESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITA 137 (459)
Q Consensus 59 ig~A~g~~l~~~~~~~-~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP~~~~av~~~~~~gGi~ITa 137 (459)
+.+.+.+.+.+..... ....|++|||+|++|+.|.+++..|+-...+ .+.++ |.++||+++|.++..+.. +.|
T Consensus 106 l~~~l~kil~~~~~~~t~~~~v~~G~DtR~s~~~L~~~~~~~~~~l~a-~~~d~-GvvtTPqLHy~v~~~n~~-~~~--- 179 (539)
T KOG2537|consen 106 LERELAKILEKEALGTTVSAHVVVGRDTRPSSPRLLNAVRDGVGALFA-QVDDY-GVVTTPQLHYMVRASNTK-GAY--- 179 (539)
T ss_pred HHHHHHHHHhHhhccCcccceEEEecCCCCccHHHHHHHHHHHHhhhe-Eecce-EEEcchhhhhhhhhcccc-ccc---
Confidence 4444555554421111 2467999999999999999999999988888 99999 999999999999875432 111
Q ss_pred CCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccCCCCCCCcchHHHHHHHHHHhcccccCccCC
Q psy1654 138 SHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQIQPCPLDSVLEKYGQSVLDGAYDLGLNEK 217 (459)
Q Consensus 138 Shnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~l~~~~~~~~~~~~ 217 (459)
| + |.+ + +..-+.+ +-..+..+ ...... ...
T Consensus 180 --------~-~-----~~~-t--~~~Y~~~-ls~af~~l---------------------------~~~~~~-----~~~ 209 (539)
T KOG2537|consen 180 --------G-K-----GKP-T--EEGYYSK-LSKAFNEL---------------------------RNITQE-----SGD 209 (539)
T ss_pred --------c-c-----CCC-C--cccHHHH-HHHHHHHh---------------------------hhhccc-----cCC
Confidence 1 1 111 0 0000111 11111100 000000 112
Q ss_pred CCceEEEeCCCCCCHHHHHHHHHHcC--CCCeEEeccccccCC---------CCCCCCCCCCCCchhHHHHHHHHHhcCC
Q psy1654 218 SQVVITYSAMHGVGYPYVNQLFKLFK--FKPLVLVDAQCSPDP---------EFPTVRFPNPEEPSSLDLAVKTADQHGS 286 (459)
Q Consensus 218 ~~~kVvvD~~~G~~~~~~~~ll~~LG--~~~~~~v~~~~~pd~---------~f~~~~~p~p~~~~~l~~~~~~v~~~~a 286 (459)
...|+.|||.||++..-+..+..... .+ +.++ |...|| +|-......|. .+.. ..+
T Consensus 210 ~~~k~~VD~ANGvG~~klk~l~~i~~~~l~-vEiv--Nd~~dpelLN~~CGADFVkt~QkpP~---~~~~-------~~~ 276 (539)
T KOG2537|consen 210 EVSKLIVDCANGVGAPKLKELLGIDSGLLN-VEVV--NDGIDPGLLNNGCGADFVKTKQKPPK---GLSP-------IKA 276 (539)
T ss_pred ccceEEEECccccchHHHHHHhccCCCcCc-eEEE--cCCCChhhhccccccchhhccccCCC---CCCC-------CCC
Confidence 45699999999999988877765222 21 1233 444432 22211111121 1111 122
Q ss_pred c-EEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccchHHHHHHHHH-cCCc
Q psy1654 287 T-VILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKILHTIAQA-EGLK 364 (459)
Q Consensus 287 d-lGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss~~l~~ia~~-~g~~ 364 (459)
| ....||||+||+..+.-.+++++++++||++..+++.|+.+..+... ..+ ...||.|..|...--++.+. .++.
T Consensus 277 ~~~caSfDGDADRlvyf~~~~~~~f~llDGDkistlla~~l~~ll~~~~--~~l-~~GvVqtaYaNgast~yl~~~l~~~ 353 (539)
T KOG2537|consen 277 NTRCASFDGDADRLVYFYIDDDSEFHLLDGDKIATLIAGYLRELLKQIE--LSL-RLGVVQTAYANGASTDYLKETLKFP 353 (539)
T ss_pred CCceeeeecccceeEEEEecCCceeEeecchHHHHHHHHHHHHHHHHhh--ccc-eeeeEEEEeecCccHhhhhhhcCCc
Confidence 2 67899999999887776567778999999999999999876654322 223 34588899887776666665 9999
Q ss_pred EEEecccceeccccchHHhhcCCeEEEEEecCC
Q psy1654 365 YDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAI 397 (459)
Q Consensus 365 v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sg 397 (459)
++.+++|.|++..++.+. ++-+.+|.+|
T Consensus 354 vv~v~tGvKhlh~~A~ef-----DiGiyFEaNG 381 (539)
T KOG2537|consen 354 VVCVPTGVKHLHHAAAEF-----DIGIYFEANG 381 (539)
T ss_pred eEEeccccchHHHHHHhh-----cceeEEeccC
Confidence 999999999999988754 5667788774
No 43
>PLN02895 phosphoacetylglucosamine mutase
Probab=98.44 E-value=1.9e-06 Score=91.19 Aligned_cols=57 Identities=35% Similarity=0.427 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCCCcEEEEcCCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccC
Q psy1654 93 AELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQII 158 (459)
Q Consensus 93 ~~a~~~gL~~~G~~~V~~~~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~ 158 (459)
-+..+..|.+.|+ +|..+....|+ ++++.+||||||||||++|||+|+++++|.++.
T Consensus 31 FR~~a~~l~~~~~-r~~~~~~~r~~--------~~~~~~gVmITaSHnp~~~nG~K~~~~~G~~~~ 87 (562)
T PLN02895 31 FRTDASLLESTVF-RVGILAALRSL--------KTGAATGLMITASHNPVSDNGVKIVDPSGGMLP 87 (562)
T ss_pred hHHHHHHHHhcCe-EEEEeCCCCcc--------ccCCCcEEEEeCCCCCcccCcEEEECCCCCcCC
Confidence 5667889999999 99988554455 448899999999999999999999999999876
No 44
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=98.27 E-value=1.1e-06 Score=93.62 Aligned_cols=39 Identities=41% Similarity=0.649 Sum_probs=34.0
Q ss_pred CCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHH
Q psy1654 129 LALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQE 167 (459)
Q Consensus 129 ~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~ 167 (459)
+.+||||||||||++|||+|+++++|.++.++.+..++.
T Consensus 75 ~~~GImiTASHNp~~~NG~K~~~~~G~~l~~~~~~~i~~ 113 (585)
T PTZ00302 75 KSVGVMITASHNPIQDNGVKIIDPDGGMLEESWEKICTD 113 (585)
T ss_pred cceeEEEeCCCCCcccCCEEEECCCCCcCCCcHHHHHHH
Confidence 788999999999999999999999999998875444443
No 45
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=98.02 E-value=5.9e-06 Score=87.43 Aligned_cols=29 Identities=55% Similarity=0.862 Sum_probs=27.2
Q ss_pred CeEEEEeCCCCCCCCCceeeEcCCCCccC
Q psy1654 130 ALGIMITASHNPKEDNGYKLYDSKGCQII 158 (459)
Q Consensus 130 ~gGi~ITaShnp~~~nGiK~~~~~G~~l~ 158 (459)
.+||||||||||++|||||+..++|..+.
T Consensus 36 ~~gimITaSHNP~~~NGiK~~~~~g~~~~ 64 (513)
T cd03086 36 TIGVMITASHNPVEDNGVKIVDPDGEMLE 64 (513)
T ss_pred ceEEEECCCcCCcccCeEEEEcCCCCCCC
Confidence 58999999999999999999999998875
No 46
>KOG2537|consensus
Probab=96.55 E-value=0.0068 Score=62.15 Aligned_cols=87 Identities=25% Similarity=0.312 Sum_probs=53.7
Q ss_pred cCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccCCCCCCCcchHHHHHHHHHHh
Q psy1654 128 NLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQIQPCPLDSVLEKYGQSVLD 207 (459)
Q Consensus 128 ~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~l~~ 207 (459)
+..-|+||||||||.++||+|+.++.|.-++.. ++.. . +.+........+.|++.+++
T Consensus 58 gs~IGvMiTASHNp~~dNGvKivd~~g~ml~~~----WE~~------------a------~~~vNa~~~~l~~~l~kil~ 115 (539)
T KOG2537|consen 58 GSTIGVMITASHNPVEDNGVKIVDPSGEMLAAS----WEEY------------A------TQLVNASSQALERELAKILE 115 (539)
T ss_pred CCeeEEEEEeccCchhhcCccccCCccchhhhh----hhhh------------h------CceecCCcHHHHHHHHHHHh
Confidence 445699999999999999999999999765421 2221 0 00001011236777776665
Q ss_pred cccccCccCCCCceEEEeCCCCCCHHHHHHHH
Q psy1654 208 GAYDLGLNEKSQVVITYSAMHGVGYPYVNQLF 239 (459)
Q Consensus 208 ~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll 239 (459)
.- ........+|++---.-.++.++-...
T Consensus 116 ~~---~~~~t~~~~v~~G~DtR~s~~~L~~~~ 144 (539)
T KOG2537|consen 116 KE---ALGTTVSAHVVVGRDTRPSSPRLLNAV 144 (539)
T ss_pred Hh---hccCcccceEEEecCCCCccHHHHHHH
Confidence 31 112345677887777777776665443
No 47
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=86.96 E-value=3 Score=36.35 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=42.2
Q ss_pred eEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCcc-----chhHHHHH----HHhcCCeEEEEeCC
Q psy1654 78 GIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCP-----TPIIAYSI----RALNLALGIMITAS 138 (459)
Q Consensus 78 ~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~p-----tP~~~~av----~~~~~~gGi~ITaS 138 (459)
+|+||.| .++..+++.+.+-|.+.|. +|.|+ |.-. -|-+.+.+ ..-.++-||.|.++
T Consensus 1 KI~igsD--h~g~~lK~~i~~~L~~~g~-eV~D~-G~~~~~~~dy~~~a~~va~~V~~~~~d~GIliCgt 66 (140)
T PF02502_consen 1 KIAIGSD--HAGFELKEAIKEYLEEKGY-EVIDF-GTYSEDSVDYPDFAEKVAEAVASGEADRGILICGT 66 (140)
T ss_dssp EEEEEE---GGGHHHHHHHHHHHHHTTE-EEEEE-SESSTST--HHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred CEEEEeC--HHHHHHHHHHHHHHHHCCC-EEEEe-CCCCCCCCCHHHHHHHHHHHHHcccCCeEEEEcCC
Confidence 5899999 7899999999999999999 99999 7555 44444433 33356667777654
No 48
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=86.25 E-value=3.7 Score=35.76 Aligned_cols=57 Identities=25% Similarity=0.292 Sum_probs=40.9
Q ss_pred eEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCccc--hhHHHHH----HHhcCCeEEEEeCC
Q psy1654 78 GIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPT--PIIAYSI----RALNLALGIMITAS 138 (459)
Q Consensus 78 ~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~pt--P~~~~av----~~~~~~gGi~ITaS 138 (459)
+|+||.| ..+-.+|+.+..-|.+.|. +|.|+ |.-++ |-+...+ ..-.++-||.|-++
T Consensus 2 kI~igsD--haG~~lK~~l~~~L~~~g~-eV~D~-G~~~~dypd~a~~va~~V~~~e~~~GIliCGt 64 (141)
T PRK12613 2 AIILGAD--AHGNALKELIKSFLQEEGY-DIIDV-TDINSDFIDNTLAVAKAVNEAEGRLGIMVDAY 64 (141)
T ss_pred EEEEEeC--cchHHHHHHHHHHHHHCCC-EEEEc-CCCCCChHHHHHHHHHHHHcCCCceEEEEcCC
Confidence 4899999 7899999999999999999 99999 76443 4333333 22334455555443
No 49
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=85.69 E-value=4.3 Score=35.38 Aligned_cols=56 Identities=25% Similarity=0.383 Sum_probs=40.5
Q ss_pred eEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCC---ccchhHHHHH----HHhcCCeEEEEeC
Q psy1654 78 GIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRV---CPTPIIAYSI----RALNLALGIMITA 137 (459)
Q Consensus 78 ~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~---~ptP~~~~av----~~~~~~gGi~ITa 137 (459)
+|+||.| ..+-.+|+.+..-|.+.|. +|.|+ |. +--|-+.+.+ ..-.++-||.|-+
T Consensus 2 kI~IgsD--h~G~~lK~~i~~~L~~~G~-eV~D~-G~~~~~dYpd~a~~va~~V~~~e~~~GIliCG 64 (141)
T TIGR01118 2 AIIIGSD--LAGKRLKDVIKNFLVDNGF-EVIDV-TEGDGQDFVDVTLAVASEVQKDEQNLGIVIDA 64 (141)
T ss_pred EEEEEeC--cchHHHHHHHHHHHHHCCC-EEEEc-CCCCCCCcHHHHHHHHHHHHcCCCceEEEEcC
Confidence 5899999 7899999999999999999 99999 75 2334444333 2234455665544
No 50
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=85.61 E-value=5.1 Score=34.99 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=35.1
Q ss_pred eEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCC---ccchhHHHHH
Q psy1654 78 GIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRV---CPTPIIAYSI 124 (459)
Q Consensus 78 ~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~---~ptP~~~~av 124 (459)
+|+||.| ..+-.+|+.+.+-|.+.|. +|.|+ |. +.-|-+.+.+
T Consensus 2 kI~igsD--haG~~lK~~l~~~L~~~G~-eV~D~-G~~~~~dYpd~a~~v 47 (142)
T PRK08621 2 AIIIGAD--KAGFELKEVVKDYLEDNKY-EVVDV-TEEGAEDFVDSTLAV 47 (142)
T ss_pred EEEEEeC--cchHHHHHHHHHHHHHCCC-EEEEC-CCCCCCCcHHHHHHH
Confidence 5899999 7889999999999999999 99999 75 3345544443
No 51
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=84.37 E-value=4.8 Score=35.22 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=30.4
Q ss_pred eEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy1654 78 GIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRV 114 (459)
Q Consensus 78 ~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~ 114 (459)
+|+||.| ..+..||+.+..-|.+.|. +|.|+ |.
T Consensus 1 kI~igsD--haG~~lK~~l~~~L~~~g~-eV~D~-G~ 33 (143)
T TIGR01120 1 KIAIGSD--HAGFILKEEIKAFLVERGV-KVIDK-GT 33 (143)
T ss_pred CEEEEeC--cchHHHHHHHHHHHHHCCC-EEEEe-CC
Confidence 3889999 7899999999999999999 99999 75
No 52
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=83.63 E-value=5.8 Score=34.91 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=30.5
Q ss_pred eEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy1654 78 GIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRV 114 (459)
Q Consensus 78 ~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~ 114 (459)
+|+||.| ..+-.||+.+..-|.+.|. +|.|+ |.
T Consensus 2 kI~igsD--haG~~lK~~l~~~L~~~g~-eV~D~-G~ 34 (148)
T PRK05571 2 KIAIGSD--HAGFELKEEIIEHLEELGH-EVIDL-GP 34 (148)
T ss_pred EEEEEeC--CchHHHHHHHHHHHHHCCC-EEEEc-CC
Confidence 5899999 7899999999999999999 99999 64
No 53
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=82.54 E-value=6.5 Score=35.40 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=30.6
Q ss_pred eEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy1654 78 GIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRV 114 (459)
Q Consensus 78 ~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~ 114 (459)
+|+||.| ..+-.||+.+..-|.+.|. +|.|+ |.
T Consensus 2 kI~igsD--haG~~lK~~l~~~L~~~G~-eV~D~-G~ 34 (171)
T TIGR01119 2 KIAIGCD--HIVTDVKMEVSEFLKSKGY-EVLDV-GT 34 (171)
T ss_pred EEEEEeC--CchHHHHHHHHHHHHHCCC-EEEEe-CC
Confidence 5899999 7899999999999999999 99999 74
No 54
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=82.28 E-value=6.8 Score=34.59 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=31.2
Q ss_pred CeEEEEeCCCCChHHHHHHHHHHHHh--CCCcEEEEcCCC
Q psy1654 77 SGIIVGYDGRHNSKRFAELTASVFLN--GGVKRVFLVSRV 114 (459)
Q Consensus 77 ~~VvVg~D~R~~s~~l~~a~~~gL~~--~G~~~V~~~~g~ 114 (459)
-+|+||.| ..+-.||+.+..-|.+ .|. +|.|+ |.
T Consensus 3 mkI~igsD--haG~~lK~~l~~~L~~~~~g~-eV~D~-G~ 38 (151)
T PTZ00215 3 KKVAIGSD--HAGFDLKNEIIDYIKNKGKEY-KIEDM-GT 38 (151)
T ss_pred cEEEEEeC--CchHHHHHHHHHHHHhccCCC-EEEEc-CC
Confidence 46999999 7899999999999999 999 99999 64
No 55
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=81.45 E-value=6.9 Score=34.29 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=29.1
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy1654 79 IIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRV 114 (459)
Q Consensus 79 VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~ 114 (459)
|+||.| ..+-.+|+.+..-|.+.|. +|.|+ |.
T Consensus 1 I~igsD--haG~~lK~~l~~~L~~~g~-eV~D~-G~ 32 (144)
T TIGR00689 1 IAIGSD--HAGLELKSEIIEHLKQKGH-EVIDC-GT 32 (144)
T ss_pred CEEeeC--cchHHHHHHHHHHHHHCCC-EEEEc-CC
Confidence 578888 7889999999999999999 99999 75
No 56
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=81.35 E-value=7.7 Score=34.95 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=30.5
Q ss_pred eEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy1654 78 GIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRV 114 (459)
Q Consensus 78 ~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~ 114 (459)
+|+||.| ..+-.+|+.+.+-|.+.|. +|.|+ |.
T Consensus 2 kI~IgsD--haG~~lK~~l~~~L~~~G~-eV~D~-G~ 34 (171)
T PRK08622 2 KIAIGCD--HIVTDEKMAVSDYLKSKGH-EVIDV-GT 34 (171)
T ss_pred EEEEEeC--cchHHHHHHHHHHHHHCCC-EEEEc-CC
Confidence 5899999 7889999999999999999 99999 74
No 57
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=80.49 E-value=8.8 Score=33.80 Aligned_cols=57 Identities=23% Similarity=0.203 Sum_probs=41.3
Q ss_pred eEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCC------ccchhHHHHH----HHhcCCeEEEEeCC
Q psy1654 78 GIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRV------CPTPIIAYSI----RALNLALGIMITAS 138 (459)
Q Consensus 78 ~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~------~ptP~~~~av----~~~~~~gGi~ITaS 138 (459)
+|+||.| ..+-.+|+.+..-|.+.|. +|.|+ |. ..-|-+...+ ..-.++-||.|-++
T Consensus 2 kI~igsD--haG~~lK~~l~~~L~~~g~-eV~D~-G~~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGt 68 (148)
T TIGR02133 2 RVVLGHD--HAGFEYKEALWLDLAAHEP-EVCDV-GVYDADDDDDYPCFCIAAAEAVARDAADLGIVIGGS 68 (148)
T ss_pred EEEEEeC--chhHHHHHHHHHHHHHCCC-EEEEC-CCCCCCCCCCchHHHHHHHHHHhcCCCceEEEEcCC
Confidence 5899999 7889999999999999999 99999 74 2245444433 22345556666554
No 58
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=79.94 E-value=8.8 Score=34.58 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=30.5
Q ss_pred eEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy1654 78 GIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRV 114 (459)
Q Consensus 78 ~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~ 114 (459)
+|+||.| ..+-.||+.+.+-|.+.|. .|.|+ |.
T Consensus 2 kI~igsD--haG~~lK~~l~~~L~~~G~-eV~D~-G~ 34 (171)
T PRK12615 2 KIAIGCD--HIVTNEKMAVSDFLKSKGY-DVIDC-GT 34 (171)
T ss_pred EEEEEeC--chhHHHHHHHHHHHHHCCC-EEEEc-CC
Confidence 5899999 7889999999999999999 99999 74
No 59
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=71.19 E-value=21 Score=36.56 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCeEEEEeC-CCCChHHHHHHHHHHHHhCCCcEEEEcCCCccchhHHHHHHHhcCCeEEE
Q psy1654 56 IIQTGQGILSCAEKHIPNFKESGIIVGYD-GRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIM 134 (459)
Q Consensus 56 v~~ig~A~g~~l~~~~~~~~~~~VvVg~D-~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP~~~~av~~~~~~gGi~ 134 (459)
..++..+|-.|...+- ..+|+|-|| ...+.+.+++++++||+..|+ +|... . +.+--.+..+.......|++
T Consensus 230 ~~~i~~~Y~~W~~~~~----~~~V~l~Y~smyg~T~~ma~aiaegl~~~gv-~v~~~-~-~~~~~~~eI~~~i~~a~~~v 302 (388)
T COG0426 230 PKEIVEAYRDWAEGQP----KGKVDLIYDSMYGNTEKMAQAIAEGLMKEGV-DVEVI-N-LEDADPSEIVEEILDAKGLV 302 (388)
T ss_pred HHHHHHHHHHHHccCC----cceEEEEEecccCCHHHHHHHHHHHhhhcCC-ceEEE-E-cccCCHHHHHHHHhhcceEE
Confidence 4577788988876532 236999999 557788999999999999999 77655 2 22224454444544444777
Q ss_pred EeC
Q psy1654 135 ITA 137 (459)
Q Consensus 135 ITa 137 (459)
|-+
T Consensus 303 vGs 305 (388)
T COG0426 303 VGS 305 (388)
T ss_pred Eec
Confidence 644
No 60
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=68.56 E-value=24 Score=31.09 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=29.1
Q ss_pred eEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 78 GIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 78 ~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
+|+||.| .++..+++.+..-|.+.|. +|+|+
T Consensus 2 kIaig~D--hag~~lK~~I~~~Lk~~g~-~v~D~ 32 (151)
T COG0698 2 KIAIGSD--HAGYELKEIIIDHLKSKGY-EVIDF 32 (151)
T ss_pred cEEEEcC--cccHHHHHHHHHHHHHCCC-EEEec
Confidence 5899999 7889999999999999999 99998
No 61
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=60.48 E-value=25 Score=35.62 Aligned_cols=163 Identities=14% Similarity=0.188 Sum_probs=88.1
Q ss_pred ccCCCCccee-cCC--C-----CCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHh---
Q psy1654 34 KFGTAGIRGP-MGV--G-----FSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLN--- 102 (459)
Q Consensus 34 ~Fgt~GiRG~-~~~--~-----~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~--- 102 (459)
-|+..||||+ +.. + -||+||..+..+-.=+- .+.+ ....++-.| +..|+.
T Consensus 59 alsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~----~N~~---~~~~v~n~D------------AN~lm~~~~ 119 (380)
T COG1867 59 ALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVR----LNSG---EDAEVINKD------------ANALLHELH 119 (380)
T ss_pred cccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHH----hcCc---ccceeecch------------HHHHHHhcC
Confidence 3678899997 222 1 27999987665433221 1111 233444456 223332
Q ss_pred CCCcEEEEcC--CCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhcccccccc
Q psy1654 103 GGVKRVFLVS--RVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIW 180 (459)
Q Consensus 103 ~G~~~V~~~~--g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~ 180 (459)
..+ +|+|++ | .|.|++--|++...-.|=+.|||. |..+|+.+..+.-.+++-... ....+
T Consensus 120 ~~f-d~IDiDPFG-SPaPFlDaA~~s~~~~G~l~vTAT--------------D~a~L~G~~p~~c~rkY~a~~--~~~~~ 181 (380)
T COG1867 120 RAF-DVIDIDPFG-SPAPFLDAALRSVRRGGLLCVTAT--------------DTAPLCGSYPRKCRRKYGAVP--LKTEF 181 (380)
T ss_pred CCc-cEEecCCCC-CCchHHHHHHHHhhcCCEEEEEec--------------ccccccCCChHHHHHHhcccc--CCCcc
Confidence 567 999984 4 888999988887766667788885 234444433333333322110 00000
Q ss_pred chhhccCCCCCCCcchHHHHHHHHHHhcccc-----cCccCCCCceEEEeCCCCCCHHHHHHHHHHcCC
Q psy1654 181 NIDRIRDQIQPCPLDSVLEKYGQSVLDGAYD-----LGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKF 244 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~Y~~~l~~~~~~-----~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~ 244 (459)
. ++..-.++--|+.+....++. ......--+||.+-...|+.. +.++++++|.
T Consensus 182 ~---------hE~glR~Lig~vaR~AAkyd~~i~Plls~~~dhY~Rvfv~v~rga~~--ad~~~e~~g~ 239 (380)
T COG1867 182 C---------HEVGLRILIGYVARTAAKYDKAIEPLLSLSIDHYVRVFVEVRRGARR--ADKLLENLGY 239 (380)
T ss_pred h---------hHHHHHHHHHHHHHHHHhhcccceeEEEeeeceEEEEEEEEccCchh--HHHHHHhcCc
Confidence 0 000123344566665555442 011123457788888888765 4589999994
No 62
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=53.36 E-value=1e+02 Score=26.62 Aligned_cols=56 Identities=11% Similarity=0.220 Sum_probs=36.5
Q ss_pred CCeEEEEe---CCCCChHHHHHHHHHHHHhCCCcEEEEcCCC-ccchhHHHHHHHhcCCeEEEEeC
Q psy1654 76 ESGIIVGY---DGRHNSKRFAELTASVFLNGGVKRVFLVSRV-CPTPIIAYSIRALNLALGIMITA 137 (459)
Q Consensus 76 ~~~VvVg~---D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~-~ptP~~~~av~~~~~~gGi~ITa 137 (459)
+.+|+++. |.+.-+. ..++..|.+.|. +|+++ |. +|..-+--++.+.+++ .|.+++
T Consensus 3 ~~~vl~~~~~gD~H~lG~---~iv~~~lr~~G~-eVi~L-G~~vp~e~i~~~a~~~~~d-~V~lS~ 62 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGN---KILDRALTEAGF-EVINL-GVMTSQEEFIDAAIETDAD-AILVSS 62 (137)
T ss_pred CCEEEEEeCCCChhHHHH---HHHHHHHHHCCC-EEEEC-CCCCCHHHHHHHHHHcCCC-EEEEcC
Confidence 45676665 5554444 456678889999 99999 64 5555666666666665 444443
No 63
>PLN02739 serine acetyltransferase
Probab=51.27 E-value=15 Score=37.08 Aligned_cols=32 Identities=3% Similarity=-0.038 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCC
Q psy1654 50 QMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRH 87 (459)
Q Consensus 50 ~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~ 87 (459)
++||++..+++.+|+..+++ +++|.+|+|...
T Consensus 323 DaT~e~~~~Ia~ay~~lf~~------g~sI~~g~~~~~ 354 (355)
T PLN02739 323 DATREFFQNVAVAYRETIPN------GSSVSGSCREKR 354 (355)
T ss_pred hhhHHHHHHHHHHHHhhccC------CCeEEeeccccC
Confidence 79999999999999999875 789999999753
No 64
>PTZ00090 40S ribosomal protein S11; Provisional
Probab=46.57 E-value=1.1e+02 Score=28.57 Aligned_cols=61 Identities=15% Similarity=0.062 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCccch
Q psy1654 49 SQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTP 118 (459)
Q Consensus 49 ~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP 118 (459)
..-||..+..+++..+....+.+. +.-.|.|-.= + -.++++.+|.+.|+ +|..+...+|.|
T Consensus 158 KKsTpfAAQ~aae~aakka~~~GI--k~V~V~vKGp----G--gREtALRaL~~~GL-kIt~I~DvTpiP 218 (233)
T PTZ00090 158 LQQSERCAYRIGENIAKKCRRLGI--FAVDIKFRRI----M--RVETVLQAFYANGL-QVTQIIHEPRLP 218 (233)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCC--eEEEEEEeCC----C--hHHHHHHHHHHCCC-EEEEEEECCCCC
Confidence 356899999999999998876531 1112444322 2 28899999999999 998875566666
No 65
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=44.46 E-value=92 Score=27.21 Aligned_cols=70 Identities=14% Similarity=0.047 Sum_probs=41.9
Q ss_pred eEEEeCCCCC--CHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHHHHHHhcCCcEEEEeCCCCCe
Q psy1654 221 VITYSAMHGV--GYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQHGSTVILANDPDADR 298 (459)
Q Consensus 221 kVvvD~~~G~--~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v~~~~adlGia~D~DgDR 298 (459)
||++-+-|+- -...+.+.|++.|.++ +.+.++ + + ... +..-..+.+.|.+..+|.||.+.|.|==
T Consensus 2 kI~igsDhaG~~lK~~l~~~L~~~G~eV---~D~G~~-~---~-~dY-----pd~a~~va~~V~~~~~~~GIliCGTGiG 68 (142)
T PRK08621 2 AIIIGADKAGFELKEVVKDYLEDNKYEV---VDVTEE-G---A-EDF-----VDSTLAVAKEVNKSEDNLGIVIDAYGAG 68 (142)
T ss_pred EEEEEeCcchHHHHHHHHHHHHHCCCEE---EECCCC-C---C-CCc-----HHHHHHHHHHHHcCCCceEEEEcCCChh
Confidence 5777777653 2445667788889873 322221 1 0 011 2344556777778888888888877765
Q ss_pred EEEEE
Q psy1654 299 LAVAE 303 (459)
Q Consensus 299 l~vvd 303 (459)
+.+.-
T Consensus 69 ~siaA 73 (142)
T PRK08621 69 SFMVA 73 (142)
T ss_pred hhhhh
Confidence 55544
No 66
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=42.17 E-value=54 Score=28.63 Aligned_cols=44 Identities=20% Similarity=0.434 Sum_probs=31.0
Q ss_pred CCeEEEE---eCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCccch--hHHHHH
Q psy1654 76 ESGIIVG---YDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTP--IIAYSI 124 (459)
Q Consensus 76 ~~~VvVg---~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP--~~~~av 124 (459)
..+|+|+ -|.+.-+ ++.++..|++.|+ +|... |...|| ++.-|+
T Consensus 12 rprvlvak~GlDgHd~g---akvia~~l~d~Gf-eVi~~-g~~~tp~e~v~aA~ 60 (143)
T COG2185 12 RPRVLVAKLGLDGHDRG---AKVIARALADAGF-EVINL-GLFQTPEEAVRAAV 60 (143)
T ss_pred CceEEEeccCccccccc---hHHHHHHHHhCCc-eEEec-CCcCCHHHHHHHHH
Confidence 4566664 4555444 4556888999999 99999 899999 444554
No 67
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=40.91 E-value=61 Score=26.52 Aligned_cols=54 Identities=15% Similarity=0.200 Sum_probs=37.7
Q ss_pred chhHHHHHHHHHhcCCcEEEEeCCCCCeE--EEEEecCCCCe-EEecCchhhHHHHHH
Q psy1654 271 PSSLDLAVKTADQHGSTVILANDPDADRL--AVAEKAKDGQW-KIFTGNELGALFGWW 325 (459)
Q Consensus 271 ~~~l~~~~~~v~~~~adlGia~D~DgDRl--~vvd~~~~G~~-~~~~~d~l~~L~a~~ 325 (459)
...++.+.+.+...+-.+-|.+|.+.+|+ -|+|. ++|+. +-|++++++-|...+
T Consensus 40 ~~~v~~ln~~~~~~~~~l~F~vde~~~~~vVkViD~-~T~eVIRqIP~Ee~l~l~~~l 96 (107)
T PF03646_consen 40 EEAVEKLNEFLQALNTSLRFSVDEESGRVVVKVIDK-ETGEVIRQIPPEELLDLAKRL 96 (107)
T ss_dssp HHHHHHHHHHHTTSS--EEEEEEEETTEEEEEEEET-TT-SEEEEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEEC-CCCcEEEeCCcHHHHHHHHHH
Confidence 44556667777777889999999999984 56675 56763 778999999887664
No 68
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=40.67 E-value=79 Score=31.84 Aligned_cols=43 Identities=12% Similarity=0.168 Sum_probs=29.4
Q ss_pred HhhCCCC-CCCeEEEEe--CCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 68 EKHIPNF-KESGIIVGY--DGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 68 ~~~~~~~-~~~~VvVg~--D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
.+.++.. ++.+|+|.+ |+...-...+++++..+...|+ +|+..
T Consensus 160 ~e~~g~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~-~v~~~ 205 (335)
T PRK04523 160 QEHFGTTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGM-DVTLL 205 (335)
T ss_pred HHHhCCccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCC-EEEEE
Confidence 3444444 477887766 6554444567777788888999 99877
No 69
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=40.65 E-value=74 Score=30.91 Aligned_cols=62 Identities=8% Similarity=0.073 Sum_probs=39.0
Q ss_pred CceEEEeCCCCCCH----HHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHHHHHHh
Q psy1654 219 QVVITYSAMHGVGY----PYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQ 283 (459)
Q Consensus 219 ~~kVvvD~~~G~~~----~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v~~ 283 (459)
++.|++||.|+.+. ..+...--.+|++- ++++.|..||...+. ++..-.+..+..+.+.+++
T Consensus 196 ~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~G-l~iE~H~~pd~a~~D--~~~sl~p~~l~~l~~~i~~ 261 (266)
T PRK13398 196 HLPIIVDPSHATGRRELVIPMAKAAIAAGADG-LMIEVHPEPEKALSD--ARQTLNFEEMKELVDELKP 261 (266)
T ss_pred CCCEEEeCCCcccchhhHHHHHHHHHHcCCCE-EEEeccCCccccCCc--hhhcCCHHHHHHHHHHHHH
Confidence 57899999999983 23333445789873 456668888877653 3444444555555554443
No 70
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=40.34 E-value=1.3e+02 Score=26.33 Aligned_cols=70 Identities=9% Similarity=-0.004 Sum_probs=42.3
Q ss_pred eEEEeCCCCCC--HHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHHHHHHhcCCcEEEEeCCCCCe
Q psy1654 221 VITYSAMHGVG--YPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQHGSTVILANDPDADR 298 (459)
Q Consensus 221 kVvvD~~~G~~--~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v~~~~adlGia~D~DgDR 298 (459)
||++-+-|+-. ...+.+.|++.|+++ +.... .++ ... +..-..+.+.|.+..+|.||.++|.|==
T Consensus 2 kI~IgsDh~G~~lK~~i~~~L~~~G~eV---~D~G~-~~~----~dY-----pd~a~~va~~V~~~e~~~GIliCGtGiG 68 (141)
T TIGR01118 2 AIIIGSDLAGKRLKDVIKNFLVDNGFEV---IDVTE-GDG----QDF-----VDVTLAVASEVQKDEQNLGIVIDAYGAG 68 (141)
T ss_pred EEEEEeCcchHHHHHHHHHHHHHCCCEE---EEcCC-CCC----CCc-----HHHHHHHHHHHHcCCCceEEEEcCCCHh
Confidence 67777777532 335566778889873 32221 010 011 2344566777888889999988887765
Q ss_pred EEEEE
Q psy1654 299 LAVAE 303 (459)
Q Consensus 299 l~vvd 303 (459)
+.+.-
T Consensus 69 ~siaA 73 (141)
T TIGR01118 69 SFMVA 73 (141)
T ss_pred Hhhhh
Confidence 55544
No 71
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=40.28 E-value=63 Score=29.38 Aligned_cols=51 Identities=14% Similarity=0.198 Sum_probs=37.5
Q ss_pred EeCCCCChHHHHHHHHHHHHh---CCCcEEEEcCCCccchhHHHHHHHhcCCeEEEE
Q psy1654 82 GYDGRHNSKRFAELTASVFLN---GGVKRVFLVSRVCPTPIIAYSIRALNLALGIMI 135 (459)
Q Consensus 82 g~D~R~~s~~l~~a~~~gL~~---~G~~~V~~~~g~~ptP~~~~av~~~~~~gGi~I 135 (459)
+.++||++..+++++...|.. .|. .|+|+ -+-|..+.+-....||.-.+.|
T Consensus 18 ~~~~RPT~drvrealFniL~~~~~~g~-~vLDL--FaGSGalGlEALSRGA~~v~fV 71 (183)
T PF03602_consen 18 GDNTRPTTDRVREALFNILQPRNLEGA-RVLDL--FAGSGALGLEALSRGAKSVVFV 71 (183)
T ss_dssp --TS-SSSHHHHHHHHHHHHCH-HTT--EEEET--T-TTSHHHHHHHHTT-SEEEEE
T ss_pred CCCcCCCcHHHHHHHHHHhcccccCCC-eEEEc--CCccCccHHHHHhcCCCeEEEE
Confidence 468999999999999999995 599 99998 5678888887777787654443
No 72
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=39.69 E-value=1.7e+02 Score=30.01 Aligned_cols=51 Identities=27% Similarity=0.270 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCC-ChHHHHHHHHHHHH--hCCCcEEEEc
Q psy1654 56 IIQTGQGILSCAEKHIPNFKESGIIVGYDGRH-NSKRFAELTASVFL--NGGVKRVFLV 111 (459)
Q Consensus 56 v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~-~s~~l~~a~~~gL~--~~G~~~V~~~ 111 (459)
+.++-..|-.+...+ ..++|+|-|++.. +.++++++++.|+. ..|+ +|...
T Consensus 231 ~~~~~~~Y~~~~~~~----~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~-~v~~~ 284 (394)
T PRK11921 231 PLQIVEKYLEWAANY----QENQVTILYDTMWNSTRRMAEAIAEGIKKANKDV-TVKLY 284 (394)
T ss_pred HHHHHHHHHHHhhcC----CcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCC-eEEEE
Confidence 334444566665432 1467889998884 57899999999998 7888 77443
No 73
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=39.67 E-value=90 Score=26.74 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=30.5
Q ss_pred EEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCccch-hHHHHHHHhcCC
Q psy1654 81 VGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTP-IIAYSIRALNLA 130 (459)
Q Consensus 81 Vg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP-~~~~av~~~~~~ 130 (459)
|+-|.+.-+. +.++..|..+|. +|+++ |.--+| .+--++.+.+++
T Consensus 7 v~gD~HdiGk---niv~~~L~~~Gf-eVidL-G~~v~~e~~v~aa~~~~ad 52 (128)
T cd02072 7 IGSDCHAVGN---KILDHAFTEAGF-NVVNL-GVLSPQEEFIDAAIETDAD 52 (128)
T ss_pred eCCchhHHHH---HHHHHHHHHCCC-EEEEC-CCCCCHHHHHHHHHHcCCC
Confidence 4556665554 567778999999 99999 765555 444445555665
No 74
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=39.67 E-value=46 Score=33.55 Aligned_cols=57 Identities=19% Similarity=0.220 Sum_probs=32.9
Q ss_pred eEEEeCCCCCCHHHHHHHHHHcCCCCeEEecc--------ccccCCCCCCCCCCCCCC-chhHHHHHHHH
Q psy1654 221 VITYSAMHGVGYPYVNQLFKLFKFKPLVLVDA--------QCSPDPEFPTVRFPNPEE-PSSLDLAVKTA 281 (459)
Q Consensus 221 kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~--------~~~pd~~f~~~~~p~p~~-~~~l~~~~~~v 281 (459)
-|++|| |+=..++..+.++ ||++ .+++- ..+|||-|-....-+|+. +..+..+++.+
T Consensus 182 Vv~iD~--GvK~nIlr~L~~r-g~~v-tVVP~~t~~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~ 247 (368)
T COG0505 182 VVVIDF--GVKRNILRELVKR-GCRV-TVVPADTSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELL 247 (368)
T ss_pred EEEEEc--CccHHHHHHHHHC-CCeE-EEEcCCCCHHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHh
Confidence 467787 6667777766554 9985 45542 347888776544446644 23333333333
No 75
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=38.50 E-value=1.1e+02 Score=27.52 Aligned_cols=64 Identities=11% Similarity=-0.067 Sum_probs=35.4
Q ss_pred eEEEeCCCCC--CHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC-chhHHHHHHHHHhcCCcEEEEeCCCC
Q psy1654 221 VITYSAMHGV--GYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE-PSSLDLAVKTADQHGSTVILANDPDA 296 (459)
Q Consensus 221 kVvvD~~~G~--~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~-~~~l~~~~~~v~~~~adlGia~D~Dg 296 (459)
||++-+-|.. -...+.+-|++.|.++ +.+.. .. .+|.+ +..-..+.+.|.+..+|.||.+.|.|
T Consensus 2 kI~IgsDhaG~~lK~~l~~~L~~~G~eV---~D~G~--~~-------~e~~dYpd~a~~va~~V~~g~~d~GIliCGTG 68 (171)
T PRK08622 2 KIAIGCDHIVTDEKMAVSDYLKSKGHEV---IDVGT--YD-------FTRTHYPIFGKKVGEAVASGEADLGVCICGTG 68 (171)
T ss_pred EEEEEeCcchHHHHHHHHHHHHHCCCEE---EEcCC--CC-------CCCCChHHHHHHHHHHHHcCCCcEEEEEcCCc
Confidence 5777777753 2345666778889873 22221 11 11222 33445566677777777777666544
No 76
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=37.94 E-value=3.2e+02 Score=25.00 Aligned_cols=61 Identities=10% Similarity=0.092 Sum_probs=41.1
Q ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCccchhHHHHHHHhcCCeEEEEeCC
Q psy1654 76 ESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITAS 138 (459)
Q Consensus 76 ~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP~~~~av~~~~~~gGi~ITaS 138 (459)
.++|+++.=.-..=..=++.++..|.+.|. +|+++.-.+|..-+--++.+.+.+ -|.++++
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~-~vi~LG~~vp~e~~v~~~~~~~pd-~v~lS~~ 144 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGF-DVIDLGRDVPIDTVVEKVKKEKPL-MLTGSAL 144 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCc-EEEECCCCCCHHHHHHHHHHcCCC-EEEEccc
Confidence 357877764444444445667778999999 999994356666666667777665 5666554
No 77
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=37.33 E-value=1.3e+02 Score=26.49 Aligned_cols=74 Identities=8% Similarity=-0.066 Sum_probs=45.7
Q ss_pred eEEEeCCCCCC--HHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHHHHHHhcCCcEEEEeCCCCCe
Q psy1654 221 VITYSAMHGVG--YPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQHGSTVILANDPDADR 298 (459)
Q Consensus 221 kVvvD~~~G~~--~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v~~~~adlGia~D~DgDR 298 (459)
||++.|-|.-- ...+.+.|++.|.++ +...+ ... ..+ ...+..-..+.+.|.+..+|.||.+.|.|--
T Consensus 2 kI~igsDhaG~~lK~~l~~~L~~~g~eV---~D~G~--~~~----~~~-~dYpd~a~~va~~V~~~~~~~GIliCGtGiG 71 (148)
T TIGR02133 2 RVVLGHDHAGFEYKEALWLDLAAHEPEV---CDVGV--YDA----DDD-DDYPCFCIAAAEAVARDAADLGIVIGGSGNG 71 (148)
T ss_pred EEEEEeCchhHHHHHHHHHHHHHCCCEE---EECCC--CCC----CCC-CCchHHHHHHHHHHhcCCCceEEEEcCCChh
Confidence 67777777532 335566778889863 22221 000 000 0012345667788888999999999999987
Q ss_pred EEEEEe
Q psy1654 299 LAVAEK 304 (459)
Q Consensus 299 l~vvd~ 304 (459)
+.+.-+
T Consensus 72 ~siaAN 77 (148)
T TIGR02133 72 EAIAAN 77 (148)
T ss_pred heeeec
Confidence 777654
No 78
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=36.88 E-value=58 Score=32.76 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=41.6
Q ss_pred CCceEEEeCCCCCCH----HHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHHHHHHh
Q psy1654 218 SQVVITYSAMHGVGY----PYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQ 283 (459)
Q Consensus 218 ~~~kVvvD~~~G~~~----~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v~~ 283 (459)
..+.|++|+.|+.+. ..++..--.+|++- ++++.|.+||...+. .|..-.+..+..+.+.+++
T Consensus 261 ~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdG-liIE~H~~pd~alsD--~~~sl~p~e~~~lv~~i~~ 327 (335)
T PRK08673 261 THLPVIVDPSHATGKRDLVEPLALAAVAAGADG-LIVEVHPDPEKALSD--GPQSLTPEEFEELMKKLRA 327 (335)
T ss_pred cCCCEEEeCCCCCccccchHHHHHHHHHhCCCE-EEEEecCCcccCCCc--chhcCCHHHHHHHHHHHHH
Confidence 358899999999886 24444556789984 356568888877753 4554445556666555544
No 79
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=36.77 E-value=1e+02 Score=26.58 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=33.7
Q ss_pred EEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCccch-hHHHHHHHhcCCeEEEEeC
Q psy1654 81 VGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTP-IIAYSIRALNLALGIMITA 137 (459)
Q Consensus 81 Vg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP-~~~~av~~~~~~gGi~ITa 137 (459)
|+-|.+.-+. +.++..|.++|. +|+++ |...+| .+--++.+.+++ .|.+++
T Consensus 9 v~~D~HdiGk---~iv~~~l~~~Gf-eVi~L-G~~v~~e~~v~aa~~~~ad-iVglS~ 60 (134)
T TIGR01501 9 IGSDCHAVGN---KILDHAFTNAGF-NVVNL-GVLSPQEEFIKAAIETKAD-AILVSS 60 (134)
T ss_pred ecCChhhHhH---HHHHHHHHHCCC-EEEEC-CCCCCHHHHHHHHHHcCCC-EEEEec
Confidence 4567766665 557778999999 99999 765555 444445555665 344433
No 80
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=36.76 E-value=2e+02 Score=26.76 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=40.5
Q ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCC-CccchhHHHHHHHhcCCeEEEEeC
Q psy1654 76 ESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSR-VCPTPIIAYSIRALNLALGIMITA 137 (459)
Q Consensus 76 ~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g-~~ptP~~~~av~~~~~~gGi~ITa 137 (459)
.++|+++.=.-..-..=++.++.-|.+.|. +|+++ | .+|.+-+--++.+.+++ .|.+++
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~-~Vi~L-G~~vp~e~~v~~~~~~~~~-~V~lS~ 147 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGY-EVIDL-GVMVPIEKILEAAKEHKAD-IIGLSG 147 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCC-EEEEC-CCCCCHHHHHHHHHHcCCC-EEEEcc
Confidence 457888875444444445667788999999 99999 6 56777666666776665 444444
No 81
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=36.03 E-value=1.5e+02 Score=25.83 Aligned_cols=64 Identities=8% Similarity=-0.081 Sum_probs=33.2
Q ss_pred eEEEeCCCCCC--HHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC-chhHHHHHHHHHhcCCcEEEEeCCCC
Q psy1654 221 VITYSAMHGVG--YPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE-PSSLDLAVKTADQHGSTVILANDPDA 296 (459)
Q Consensus 221 kVvvD~~~G~~--~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~-~~~l~~~~~~v~~~~adlGia~D~Dg 296 (459)
||++-+-|.-- ...+.+.|++.|.++ +...+. . .+|.+ +..-..+.+.|.+..+|+||.++|.|
T Consensus 1 kI~igsDhaG~~lK~~l~~~L~~~g~eV---~D~G~~-----~----~~~~dYpd~a~~va~~V~~~~~~~GIliCGtG 67 (143)
T TIGR01120 1 KIAIGSDHAGFILKEEIKAFLVERGVKV---IDKGTW-----S----SERTDYPHYAKQVALAVAGGEVDGGILICGTG 67 (143)
T ss_pred CEEEEeCcchHHHHHHHHHHHHHCCCEE---EEeCCC-----C----CCCCCHHHHHHHHHHHHHCCCCceEEEEcCCc
Confidence 35566655432 335566778899873 222211 1 11222 23344556667666677776665543
No 82
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=35.88 E-value=1.6e+02 Score=25.93 Aligned_cols=65 Identities=6% Similarity=-0.083 Sum_probs=35.8
Q ss_pred eEEEeCCCCCC--HHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCC-CCC-chhHHHHHHHHHhcCCcEEEEeCCCC
Q psy1654 221 VITYSAMHGVG--YPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPN-PEE-PSSLDLAVKTADQHGSTVILANDPDA 296 (459)
Q Consensus 221 kVvvD~~~G~~--~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~-p~~-~~~l~~~~~~v~~~~adlGia~D~Dg 296 (459)
||++-|-|.-- ...+.+.|++.|.++ +.+.+. . ++ |.+ +..-..+.+.|.+..+|.||.+.|.|
T Consensus 2 kI~igsDhaG~~lK~~l~~~L~~~g~eV---~D~G~~--~-------~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtG 69 (148)
T PRK05571 2 KIAIGSDHAGFELKEEIIEHLEELGHEV---IDLGPD--S-------YDASVDYPDYAKKVAEAVVAGEADRGILICGTG 69 (148)
T ss_pred EEEEEeCCchHHHHHHHHHHHHHCCCEE---EEcCCC--C-------CCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCc
Confidence 57777766432 345566788889873 222211 0 11 222 33445566777777777777766544
Q ss_pred C
Q psy1654 297 D 297 (459)
Q Consensus 297 D 297 (459)
=
T Consensus 70 i 70 (148)
T PRK05571 70 I 70 (148)
T ss_pred H
Confidence 3
No 83
>PRK08868 flagellar protein FlaG; Provisional
Probab=35.87 E-value=1.3e+02 Score=26.41 Aligned_cols=54 Identities=9% Similarity=0.120 Sum_probs=42.1
Q ss_pred chhHHHHHHHHHhcCCcEEEEeCCCCCeE--EEEEecCCCC-eEEecCchhhHHHHHH
Q psy1654 271 PSSLDLAVKTADQHGSTVILANDPDADRL--AVAEKAKDGQ-WKIFTGNELGALFGWW 325 (459)
Q Consensus 271 ~~~l~~~~~~v~~~~adlGia~D~DgDRl--~vvd~~~~G~-~~~~~~d~l~~L~a~~ 325 (459)
...++.+.+.+...+-++-|.+|.+.+|+ -|+|. ++|+ .|-|.+++++-|+.++
T Consensus 74 ~~aVeklNe~~~~~n~~L~F~vdeetgr~VVkViD~-~T~EVIRQIP~Ee~L~la~~l 130 (144)
T PRK08868 74 EKMVEQMNEFVKSINKGLSFRVDEESGRDVVTIYEA-STGDIIRQIPDEEMLEVLRRL 130 (144)
T ss_pred HHHHHHHHHHHHhhcCceEEEEecCCCCEEEEEEEC-CCCceeeeCCCHHHHHHHHHH
Confidence 45566777778888889999999999994 56776 4664 4778999999888764
No 84
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=35.80 E-value=88 Score=27.23 Aligned_cols=62 Identities=6% Similarity=-0.001 Sum_probs=31.9
Q ss_pred eEEEeCCCCC--CHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC-chhHHHHHHHHHhcCCcEEEEeCC
Q psy1654 221 VITYSAMHGV--GYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE-PSSLDLAVKTADQHGSTVILANDP 294 (459)
Q Consensus 221 kVvvD~~~G~--~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~-~~~l~~~~~~v~~~~adlGia~D~ 294 (459)
||++-+-|.- -...+.+.|++.|.++ +...... +++.+ +..-..+.+.|.+..+|+||.++|
T Consensus 1 KI~igsDh~g~~lK~~i~~~L~~~g~eV---~D~G~~~---------~~~~dy~~~a~~va~~V~~~~~d~GIliCg 65 (140)
T PF02502_consen 1 KIAIGSDHAGFELKEAIKEYLEEKGYEV---IDFGTYS---------EDSVDYPDFAEKVAEAVASGEADRGILICG 65 (140)
T ss_dssp EEEEEE-GGGHHHHHHHHHHHHHTTEEE---EEESESS---------TST--HHHHHHHHHHHHHTTSSSEEEEEES
T ss_pred CEEEEeCHHHHHHHHHHHHHHHHCCCEE---EEeCCCC---------CCCCCHHHHHHHHHHHHHcccCCeEEEEcC
Confidence 5666666633 2345667788889873 2122211 12222 334455667777666666665544
No 85
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=35.00 E-value=1.5e+02 Score=26.80 Aligned_cols=65 Identities=11% Similarity=-0.041 Sum_probs=36.6
Q ss_pred eEEEeCCCCCC--HHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC-chhHHHHHHHHHhcCCcEEEEeCCCCC
Q psy1654 221 VITYSAMHGVG--YPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE-PSSLDLAVKTADQHGSTVILANDPDAD 297 (459)
Q Consensus 221 kVvvD~~~G~~--~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~-~~~l~~~~~~v~~~~adlGia~D~DgD 297 (459)
||++-+-|.-- ...+.+.|++.|+++ +... ++. .+|.+ +..-..+.+.|.+..+|+||.+.|.|-
T Consensus 2 kI~igsDhaG~~lK~~l~~~L~~~G~eV---~D~G--~~~-------~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGi 69 (171)
T PRK12615 2 KIAIGCDHIVTNEKMAVSDFLKSKGYDV---IDCG--TYD-------HTRTHYPIFGKKVGEAVVNGQADLGVCICGTGV 69 (171)
T ss_pred EEEEEeCchhHHHHHHHHHHHHHCCCEE---EEcC--CCC-------CCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcH
Confidence 57777777532 335566778889873 2222 111 11222 334455667777777777777766543
No 86
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=34.81 E-value=1.1e+02 Score=26.15 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=30.2
Q ss_pred EEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCccch-hHHHHHHHhcCCeEEEEeC
Q psy1654 81 VGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTP-IIAYSIRALNLALGIMITA 137 (459)
Q Consensus 81 Vg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP-~~~~av~~~~~~gGi~ITa 137 (459)
+|-|.+.-+. +.++..|.++|. +|+++ |.-.+| .+--++.+.+++ .|.|++
T Consensus 10 ~g~D~Hd~g~---~iv~~~l~~~Gf-eVi~l-g~~~s~e~~v~aa~e~~ad-ii~iSs 61 (132)
T TIGR00640 10 MGQDGHDRGA---KVIATAYADLGF-DVDVG-PLFQTPEEIARQAVEADVH-VVGVSS 61 (132)
T ss_pred eCCCccHHHH---HHHHHHHHhCCc-EEEEC-CCCCCHHHHHHHHHHcCCC-EEEEcC
Confidence 3445554443 456677899999 99999 654444 333444555555 344433
No 87
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=34.21 E-value=1.7e+02 Score=25.57 Aligned_cols=69 Identities=9% Similarity=0.037 Sum_probs=41.0
Q ss_pred eEEEeCCCCCC--HHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHHHHHHhcCCcEEEEeCCCCCe
Q psy1654 221 VITYSAMHGVG--YPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQHGSTVILANDPDADR 298 (459)
Q Consensus 221 kVvvD~~~G~~--~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v~~~~adlGia~D~DgDR 298 (459)
||++-|-|+-- ...+.+.|++.|.++ +....++ .++ +..-..+.+.|.+..++.||.++|.|==
T Consensus 2 kI~igsDhaG~~lK~~l~~~L~~~g~eV---~D~G~~~-~dy----------pd~a~~va~~V~~~e~~~GIliCGtGiG 67 (141)
T PRK12613 2 AIILGADAHGNALKELIKSFLQEEGYDI---IDVTDIN-SDF----------IDNTLAVAKAVNEAEGRLGIMVDAYGAG 67 (141)
T ss_pred EEEEEeCcchHHHHHHHHHHHHHCCCEE---EEcCCCC-CCh----------HHHHHHHHHHHHcCCCceEEEEcCCCHh
Confidence 56777766532 335566788889873 3222211 111 2344566777888888888888877755
Q ss_pred EEEEE
Q psy1654 299 LAVAE 303 (459)
Q Consensus 299 l~vvd 303 (459)
+.+.-
T Consensus 68 ~siaA 72 (141)
T PRK12613 68 PFMVA 72 (141)
T ss_pred Hhhhh
Confidence 44443
No 88
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=33.77 E-value=1.6e+02 Score=25.95 Aligned_cols=65 Identities=8% Similarity=-0.044 Sum_probs=36.3
Q ss_pred ceEEEeCCCCCC--HHHHHHHHHH--cCCCCeEEeccccccCCCCCCCCCCCCCC-chhHHHHHHHHHhcCCcEEEEeCC
Q psy1654 220 VVITYSAMHGVG--YPYVNQLFKL--FKFKPLVLVDAQCSPDPEFPTVRFPNPEE-PSSLDLAVKTADQHGSTVILANDP 294 (459)
Q Consensus 220 ~kVvvD~~~G~~--~~~~~~ll~~--LG~~~~~~v~~~~~pd~~f~~~~~p~p~~-~~~l~~~~~~v~~~~adlGia~D~ 294 (459)
.||++-|-|+-- ...+.+.|++ .|+++ +... ++. .+|.+ +..-..+.+.|.+..+++||.++|
T Consensus 3 mkI~igsDhaG~~lK~~l~~~L~~~~~g~eV---~D~G--~~~-------~~~~dYp~~a~~va~~V~~~~~~~GIliCG 70 (151)
T PTZ00215 3 KKVAIGSDHAGFDLKNEIIDYIKNKGKEYKI---EDMG--TYT-------AESVDYPDFAEKVCEEVLKGEADTGILVCG 70 (151)
T ss_pred cEEEEEeCCchHHHHHHHHHHHHhccCCCEE---EEcC--CCC-------CCCCCHHHHHHHHHHHHhcCCCcEEEEEcC
Confidence 578888877542 3355667888 89873 2221 211 11222 233455566676666777766655
Q ss_pred CC
Q psy1654 295 DA 296 (459)
Q Consensus 295 Dg 296 (459)
.|
T Consensus 71 tG 72 (151)
T PTZ00215 71 SG 72 (151)
T ss_pred Cc
Confidence 43
No 89
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=32.98 E-value=2.7e+02 Score=23.16 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=30.5
Q ss_pred eCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCccchhHHHHHHHhcCCeEEEEeC
Q psy1654 83 YDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITA 137 (459)
Q Consensus 83 ~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP~~~~av~~~~~~gGi~ITa 137 (459)
-|.+.-+. +.++..|+..|. +|+++...+|+.-+--++.+.+++ .|.|+.
T Consensus 9 gd~H~lG~---~~~~~~l~~~G~-~vi~lG~~vp~e~~~~~a~~~~~d-~V~iS~ 58 (122)
T cd02071 9 LDGHDRGA---KVIARALRDAGF-EVIYTGLRQTPEEIVEAAIQEDVD-VIGLSS 58 (122)
T ss_pred CChhHHHH---HHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHcCCC-EEEEcc
Confidence 45554444 344556899999 999994356666555556666654 344433
No 90
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=32.43 E-value=41 Score=34.23 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=29.4
Q ss_pred CeEEEEeCCCCChHHHHHHHHHHHHhCCCcEE
Q psy1654 77 SGIIVGYDGRHNSKRFAELTASVFLNGGVKRV 108 (459)
Q Consensus 77 ~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V 108 (459)
++|+|+.|.-++++.++.-+.+-|.++|+ +|
T Consensus 68 ~rVVi~~D~d~~G~~~~~~~~~~L~~aGi-~V 98 (360)
T PRK14719 68 SEVILLTDFDRAGRVYAKNIMEEFQSRGI-KV 98 (360)
T ss_pred CEEEEEECCCCCCCccchHHHHHHHHCCC-EE
Confidence 68999999999999999999999999999 99
No 91
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=32.34 E-value=1e+02 Score=23.45 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=31.3
Q ss_pred CeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 77 SGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 77 ~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
++|++..|+-..++..++.+..-|...|. +|..+
T Consensus 44 ~~vii~~D~D~aG~~a~~~~~~~l~~~g~-~~~~~ 77 (79)
T cd03364 44 KEVILAFDGDEAGQKAALRALELLLKLGL-NVRVL 77 (79)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHHHCCC-eEEEE
Confidence 57999999999999999999999999999 88754
No 92
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=31.56 E-value=37 Score=21.87 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=17.4
Q ss_pred hcCCcEEEEeCCCCCeEEEEEe
Q psy1654 283 QHGSTVILANDPDADRLAVAEK 304 (459)
Q Consensus 283 ~~~adlGia~D~DgDRl~vvd~ 304 (459)
..+.+...++.+||.++.++..
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEE
T ss_pred CCccccCEEEecCCCEEEEEec
Confidence 3446889999999999999876
No 93
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=31.13 E-value=3.1e+02 Score=29.02 Aligned_cols=49 Identities=24% Similarity=0.188 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhCCCCCCCeEEEEeCCCCC-hHHHHHHHHHHHHhC--CCcEEEEc
Q psy1654 58 QTGQGILSCAEKHIPNFKESGIIVGYDGRHN-SKRFAELTASVFLNG--GVKRVFLV 111 (459)
Q Consensus 58 ~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~-s~~l~~a~~~gL~~~--G~~~V~~~ 111 (459)
++-..|-.+...+ ..++|+|-|++... .+.++++++.||.+. |+ +|...
T Consensus 237 ~~l~~Y~~~~~~~----~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv-~v~~~ 288 (479)
T PRK05452 237 QIVELYLKWAADY----QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRV-AVKIF 288 (479)
T ss_pred HHHHHHHHHhhcc----CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCc-eEEEE
Confidence 3334455555432 14579999999865 889999999999976 67 76544
No 94
>PRK05309 30S ribosomal protein S11; Validated
Probab=30.59 E-value=3e+02 Score=23.47 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=49.8
Q ss_pred cCCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEE
Q psy1654 30 LKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVF 109 (459)
Q Consensus 30 ~~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~ 109 (459)
++.+.+.+.|..|-=|. ..-||..+...++.++..+.+.+. +.-.|.+ +- .++ -+++++.+|...|+ +|.
T Consensus 38 G~~~~~~S~G~~gfKg~--rK~T~~Aa~~aa~~~~~~~~~~gi--~~v~v~i-kG---~G~-Gr~~air~L~~~gl-kI~ 107 (128)
T PRK05309 38 GNVISWASAGGLGFKGS--RKSTPYAAQVAAEDAAKKAKEHGM--KTVEVFV-KG---PGS-GRESAIRALQAAGL-EVT 107 (128)
T ss_pred CCEEEEEecCccEeCCC--ccCCHHHHHHHHHHHHHHHHHcCC--cEEEEEE-EC---CCC-cHHHHHHHHHHCCC-EEE
Confidence 33344445566665443 467899999999999988876432 1112444 21 222 26778888999999 988
Q ss_pred EcCCCccch
Q psy1654 110 LVSRVCPTP 118 (459)
Q Consensus 110 ~~~g~~ptP 118 (459)
.+...+|.|
T Consensus 108 ~I~D~Tpip 116 (128)
T PRK05309 108 SIKDVTPIP 116 (128)
T ss_pred EEEEcCCCC
Confidence 774456655
No 95
>PRK08452 flagellar protein FlaG; Provisional
Probab=29.56 E-value=2e+02 Score=24.52 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHhcCCcEEEEeCCCCCeE--EEEEecCCCC-eEEecCchhhHHHHHH
Q psy1654 272 SSLDLAVKTADQHGSTVILANDPDADRL--AVAEKAKDGQ-WKIFTGNELGALFGWW 325 (459)
Q Consensus 272 ~~l~~~~~~v~~~~adlGia~D~DgDRl--~vvd~~~~G~-~~~~~~d~l~~L~a~~ 325 (459)
...+.+.+.+...+-++=|.+|.+.+|+ -|+|. ++|+ .|-+++++++-|+.++
T Consensus 57 ~~ve~lN~~~~~~~~~L~F~~de~~~~~vVkVvD~-~T~eVIRqIP~Ee~L~l~~~m 112 (124)
T PRK08452 57 ELTEKLNEEMKRLDTNIRFGYNDKIKGLVVSVKEA-NGGKVIREIPSKEAIELMEYM 112 (124)
T ss_pred HHHHHHHHHHHhhCCceEEEEcCCCCcEEEEEEEC-CCCceeeeCCCHHHHHHHHHH
Confidence 3455566667777889999999999995 45665 4564 4778999999888764
No 96
>PRK07738 flagellar protein FlaG; Provisional
Probab=29.20 E-value=2e+02 Score=24.23 Aligned_cols=54 Identities=6% Similarity=0.102 Sum_probs=41.6
Q ss_pred chhHHHHHHHHHhcCCcEEEEeCCCCCeE--EEEEecCCCC-eEEecCchhhHHHHHH
Q psy1654 271 PSSLDLAVKTADQHGSTVILANDPDADRL--AVAEKAKDGQ-WKIFTGNELGALFGWW 325 (459)
Q Consensus 271 ~~~l~~~~~~v~~~~adlGia~D~DgDRl--~vvd~~~~G~-~~~~~~d~l~~L~a~~ 325 (459)
...++++.+.+...+-++=|.+|.+.+|+ -|+|. ++|+ .+-|.+++++-|+..+
T Consensus 49 ~~aveklN~~l~~~~~~L~F~vdeet~~~vVkVvD~-~T~EVIRQIPpEe~L~l~~~m 105 (117)
T PRK07738 49 EEVVDGMNELLEPSQTSLKFELHEKLNEYYVQVVDE-RTNEVIREIPPKKLLDMYAAM 105 (117)
T ss_pred HHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEEC-CCCeeeeeCCCHHHHHHHHHH
Confidence 44556667777778889999999999994 56776 4664 4778899999888764
No 97
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.88 E-value=89 Score=31.67 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=40.8
Q ss_pred CCceEEEeCCCCCC-HHHHHHH---HHHcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHHHHHHhc
Q psy1654 218 SQVVITYSAMHGVG-YPYVNQL---FKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQH 284 (459)
Q Consensus 218 ~~~kVvvD~~~G~~-~~~~~~l---l~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v~~~ 284 (459)
.++.|++|+.|+++ +...+.+ --.+|++- ++++.|.+||..... .+....+..+.++.+.+++.
T Consensus 270 ~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdG-liIE~H~~pd~AlsD--~~qsl~p~~~~~l~~~i~~i 337 (352)
T PRK13396 270 THLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDS-LMIEVHPNPAKALSD--GPQSLTPDRFDRLMQELAVI 337 (352)
T ss_pred hCCCEEECCcccCCcHHHHHHHHHHHHhhCCCe-EEEEecCCcccCCCh--hhhcCCHHHHHHHHHHHHHH
Confidence 36899999999888 3333333 34689884 456568888877663 35544455566665555543
No 98
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=28.65 E-value=2.2e+02 Score=25.69 Aligned_cols=65 Identities=11% Similarity=-0.060 Sum_probs=35.9
Q ss_pred eEEEeCCCCCC--HHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC-chhHHHHHHHHHhcCCcEEEEeCCCCC
Q psy1654 221 VITYSAMHGVG--YPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE-PSSLDLAVKTADQHGSTVILANDPDAD 297 (459)
Q Consensus 221 kVvvD~~~G~~--~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~-~~~l~~~~~~v~~~~adlGia~D~DgD 297 (459)
||++-+-|.-- ...+.+.|++.|.++ +... +.. .+|.+ +..-..+.+.|.+..+|+||.+.|.|=
T Consensus 2 kI~igsDhaG~~lK~~l~~~L~~~G~eV---~D~G--~~~-------~~~~dYpd~a~~va~~V~~g~~~~GIliCGTGi 69 (171)
T TIGR01119 2 KIAIGCDHIVTDVKMEVSEFLKSKGYEV---LDVG--TYD-------FTRTHYPIFGKKVGEAVVSGEADLGVCICGTGV 69 (171)
T ss_pred EEEEEeCCchHHHHHHHHHHHHHCCCEE---EEeC--CCC-------CCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcH
Confidence 57777766532 335566778889873 2222 111 11222 334455667777777777777766443
No 99
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=28.64 E-value=1.6e+02 Score=25.72 Aligned_cols=82 Identities=15% Similarity=0.291 Sum_probs=44.3
Q ss_pred eEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHHHHHHhcCCcEEEE-----eCCC
Q psy1654 221 VITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQHGSTVILA-----NDPD 295 (459)
Q Consensus 221 kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v~~~~adlGia-----~D~D 295 (459)
||||-..|+---.++.+++.+++......+..+ .++ .+-++..++.+..-.+...+||+.+| .=|.
T Consensus 37 kIvV~t~N~kKf~vi~~il~~~~~~~i~~l~i~----Tn~-----aDlTrmPA~~K~LmavD~~dADlvIARGRLGvPGS 107 (154)
T PF11576_consen 37 KIVVATNNEKKFKVINDILSKFNLPEIEMLDIP----TNS-----ADLTRMPALSKALMAVDISDADLVIARGRLGVPGS 107 (154)
T ss_dssp -EEE----HHHHHHHHHHHHHTT----EE--S------GG-----GGGSSSHHHHHHHHHHHHH--SEEEEEEE-SSTTS
T ss_pred eEEEecCCchHhHHHHHHHHHhcCCccceeecc----Ccc-----hhcccCcHHHhHHHheeccCCcEEEEcccccCCCC
Confidence 688888888888899999999986543332221 111 22233335555555677889999987 4577
Q ss_pred CCeEEEEEecCCCCeEEecC
Q psy1654 296 ADRLAVAEKAKDGQWKIFTG 315 (459)
Q Consensus 296 gDRl~vvd~~~~G~~~~~~~ 315 (459)
|.=+.+.| .+| +++++
T Consensus 108 GSmlvimD--~kG--RiLta 123 (154)
T PF11576_consen 108 GSMLVIMD--SKG--RILTA 123 (154)
T ss_dssp -EEEEEEE--TTS---EEEE
T ss_pred ccEEEEEc--CCC--cEEee
Confidence 77777777 488 66764
No 100
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=27.94 E-value=3.4e+02 Score=22.32 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=48.3
Q ss_pred cccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcC
Q psy1654 33 LKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVS 112 (459)
Q Consensus 33 ~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~ 112 (459)
+.+-+.|..|-=|. ..-||..+...++.++..+.+.+. +.-.|.+ +- .++ -++++..+|...|+ ++..+.
T Consensus 24 ~~~~S~G~~gfkg~--rk~t~~Aa~~~a~~~~~~~~~~gi--~~v~v~~-kG---~G~-gr~~~ir~l~~~gl-kI~~I~ 93 (108)
T TIGR03632 24 LSWASAGAVGFKGS--KKSTPYAAQLAAEDAAKKAKEFGM--KTVDVYV-KG---PGA-GRESAIRALQAAGL-EVTSIK 93 (108)
T ss_pred EEEEecCceeeCCC--ccCCHHHHHHHHHHHHHHHHHcCC--cEEEEEE-EC---CCC-cHHHHHHHHHHCCC-EEEEEE
Confidence 34445566665444 478899999999999988876431 0112333 22 222 26778888999999 987774
Q ss_pred CCccch
Q psy1654 113 RVCPTP 118 (459)
Q Consensus 113 g~~ptP 118 (459)
..+|.|
T Consensus 94 D~T~ip 99 (108)
T TIGR03632 94 DVTPIP 99 (108)
T ss_pred EcCCCC
Confidence 456655
No 101
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=27.73 E-value=2e+02 Score=23.29 Aligned_cols=45 Identities=11% Similarity=0.213 Sum_probs=26.2
Q ss_pred HHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC---chhHHHHHHHHHhcCCcE
Q psy1654 235 VNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE---PSSLDLAVKTADQHGSTV 288 (459)
Q Consensus 235 ~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~---~~~l~~~~~~v~~~~adl 288 (459)
+..|.+.+|.+++-.+..+. ..|+|.. +..++.++..++..++|+
T Consensus 13 l~~L~~t~g~~vv~~~~q~~---------~~~~p~~~iG~GK~eei~~~~~~~~~d~ 60 (95)
T PF13167_consen 13 LEELAETAGYEVVGTVVQKR---------RKPDPKTYIGSGKVEEIKELIEELDADL 60 (95)
T ss_pred HHHHHHHCCCeEEEEEEecC---------CCCCcceeechhHHHHHHHHHhhcCCCE
Confidence 45567788887532221121 1233333 567888888888777654
No 102
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=27.48 E-value=4.4e+02 Score=24.68 Aligned_cols=78 Identities=22% Similarity=0.227 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhCCCCCCCeEEEE-eCCCCChHHHHHHHHHH-------HHhCCCcEEEEcCCCccchhHHHHHHHhc-
Q psy1654 58 QTGQGILSCAEKHIPNFKESGIIVG-YDGRHNSKRFAELTASV-------FLNGGVKRVFLVSRVCPTPIIAYSIRALN- 128 (459)
Q Consensus 58 ~ig~A~g~~l~~~~~~~~~~~VvVg-~D~R~~s~~l~~a~~~g-------L~~~G~~~V~~~~g~~ptP~~~~av~~~~- 128 (459)
++|.+++..+.+. +-.|+|| ++.-.+....+.++-.. -...++ +|..+ .+|.+.+.-..+.+.
T Consensus 11 niG~alA~~~a~a-----g~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~a-DVVvL--AVP~~a~~~v~~~l~~ 82 (211)
T COG2085 11 NIGSALALRLAKA-----GHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALA-DVVVL--AVPFEAIPDVLAELRD 82 (211)
T ss_pred hHHHHHHHHHHhC-----CCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcC-CEEEE--eccHHHHHhHHHHHHH
Confidence 7889999988764 5678888 55444444444433222 134456 77776 577776666666654
Q ss_pred -CCeEEEEeCCCCCCCC
Q psy1654 129 -LALGIMITASHNPKED 144 (459)
Q Consensus 129 -~~gGi~ITaShnp~~~ 144 (459)
..+=|.|..+ ||-.+
T Consensus 83 ~~~~KIvID~t-np~~~ 98 (211)
T COG2085 83 ALGGKIVIDAT-NPIEV 98 (211)
T ss_pred HhCCeEEEecC-CCccc
Confidence 3345777775 66443
No 103
>PRK09271 flavodoxin; Provisional
Probab=26.96 E-value=1.4e+02 Score=26.21 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=26.2
Q ss_pred eEEEEeCCCC-ChHHHHHHHHHHHHhCCCcEEEE
Q psy1654 78 GIIVGYDGRH-NSKRFAELTASVFLNGGVKRVFL 110 (459)
Q Consensus 78 ~VvVg~D~R~-~s~~l~~a~~~gL~~~G~~~V~~ 110 (459)
+|+|-|.+.. +++.++++++.+|...|+ +|..
T Consensus 2 kv~IvY~S~tGnTe~~A~~ia~~l~~~g~-~v~~ 34 (160)
T PRK09271 2 RILLAYASLSGNTREVAREIEERCEEAGH-EVDW 34 (160)
T ss_pred eEEEEEEcCCchHHHHHHHHHHHHHhCCC-eeEE
Confidence 4677777765 678999999999999999 8743
No 104
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=26.81 E-value=54 Score=25.19 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=24.0
Q ss_pred CeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 77 SGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 77 ~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
+.|++..|.-..++..+..+..-|...|+ +|+.+
T Consensus 47 ~~Vii~~D~D~~G~~~a~~i~~~l~~~gi-~v~~v 80 (81)
T PF13662_consen 47 KEVIIAFDNDKAGEKAAQKIAKKLLPLGI-RVTRV 80 (81)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHG----------
T ss_pred ceEEEEeCcCHHHHHHHHHHHHHHHhhcc-ccccC
Confidence 67999999999999999999999999999 88643
No 105
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=26.74 E-value=1.5e+02 Score=24.83 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCC-CCChHHHHHHHHHHHHhCCCcEE
Q psy1654 52 NDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDG-RHNSKRFAELTASVFLNGGVKRV 108 (459)
Q Consensus 52 n~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~-R~~s~~l~~a~~~gL~~~G~~~V 108 (459)
|-+.++.+|..+|.-+.+.+ -..|+.++-. ++++ -..+++.++...|+ ++
T Consensus 69 n~~aa~~vG~lla~ra~~~g----i~~v~fdr~~~~y~g--rv~a~~~~~re~Gl-~f 119 (119)
T PF00861_consen 69 NVEAAYLVGELLAKRALEKG----IAKVVFDRGGYKYHG--RVKALADGAREGGL-EF 119 (119)
T ss_dssp SHHHHHHHHHHHHHHHHHTT----SSEEEECTSTSSSSS--HHHHHHHHHHHTTC-B-
T ss_pred CEehHHHHHHHHHHHHHHcC----CcEEEEcCCCCcccH--HHHHHHHHHHHcCC-CC
Confidence 67889999999999887753 2567777755 3455 44688999999998 64
No 106
>PLN02204 diacylglycerol kinase
Probab=26.70 E-value=3.4e+02 Score=29.69 Aligned_cols=86 Identities=10% Similarity=0.115 Sum_probs=52.6
Q ss_pred chHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCH--H---HHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCC
Q psy1654 195 DSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGY--P---YVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPE 269 (459)
Q Consensus 195 ~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~--~---~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~ 269 (459)
....+.++++|...+. .+..+.+++.|+|.+..|-+. . -+..+|++.|++. .++. ... +.
T Consensus 138 ~~~~~~w~~~l~~~l~-~~~~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~-~v~~-T~~------------ag 202 (601)
T PLN02204 138 LQTCQSWVDRLNASLN-KEVGRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKT-KVIV-TER------------AG 202 (601)
T ss_pred HHHHHHHHHHHHHHHh-hccCCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeE-EEEE-ecC------------cc
Confidence 3567889999988776 244466778899998877654 2 3566788888874 2221 110 11
Q ss_pred CchhHHHHHHHH--HhcCCcEEEEeCCCCC
Q psy1654 270 EPSSLDLAVKTA--DQHGSTVILANDPDAD 297 (459)
Q Consensus 270 ~~~~l~~~~~~v--~~~~adlGia~D~DgD 297 (459)
...+.+.++. ...+.|..++.-|||-
T Consensus 203 --hA~d~~~~~~~~~l~~~D~VVaVGGDGt 230 (601)
T PLN02204 203 --HAFDVMASISNKELKSYDGVIAVGGDGF 230 (601)
T ss_pred --hHHHHHHHHhhhhccCCCEEEEEcCccH
Confidence 1222222222 2456789999999884
No 107
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=26.09 E-value=2.8e+02 Score=25.07 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=32.7
Q ss_pred HHHHHHHHcCCCCeEEeccccccCCCCCCC--CCCCCCCchhHHHHHHHHHhcCCcEEEEeCCCC
Q psy1654 234 YVNQLFKLFKFKPLVLVDAQCSPDPEFPTV--RFPNPEEPSSLDLAVKTADQHGSTVILANDPDA 296 (459)
Q Consensus 234 ~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~--~~p~p~~~~~l~~~~~~v~~~~adlGia~D~Dg 296 (459)
.+..+|++.|+++ +.. ...|...... ..........|.+-.+.+.+.++|+-|++=.|+
T Consensus 34 ~l~~~L~~~G~~V-~lt---r~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~Na 94 (189)
T TIGR02883 34 KLKDYLQEQGALV-VMT---REDDSDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHLNA 94 (189)
T ss_pred HHHHHHHhCCCEE-EEE---ecCCcCccccccccccccccCCHHHHHHHHHhcCCCEEEEEecCC
Confidence 5667788889875 332 2222222100 000011112466666778888999999987776
No 108
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=25.70 E-value=78 Score=32.54 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCccchhHHHHHHH
Q psy1654 50 QMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRA 126 (459)
Q Consensus 50 ~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP~~~~av~~ 126 (459)
=.||||.+ =|.|+-.++. ..+||||.+...+...+.+.....+. ..+ .++.- +....-++-|+...
T Consensus 146 ~~NPEFLR-EG~Av~D~~~-------PdRIViG~~~~~a~~~~~ely~~~~~-~~~-p~l~t-~~~~AE~IKyaaNa 211 (414)
T COG1004 146 ASNPEFLR-EGSAVYDFLY-------PDRIVIGVRSERAAAVLRELYAPFLR-QDV-PILFT-DLREAELIKYAANA 211 (414)
T ss_pred ecChHHhc-CcchhhhccC-------CCeEEEccCChhHHHHHHHHHhhhhh-cCC-CEEEe-cchHHHHHHHHHHH
Confidence 46788765 4677777664 46899999998888888888878777 888 88877 66666677776543
No 109
>PHA02031 putative DnaG-like primase
Probab=25.54 E-value=1.9e+02 Score=28.08 Aligned_cols=34 Identities=6% Similarity=-0.066 Sum_probs=29.8
Q ss_pred CeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 77 SGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 77 ~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
++|++.+|+-..++.-+...+..|.+.|+ +|..+
T Consensus 207 ~~Vil~fDgD~AG~~Aa~ra~~~l~~~~~-~v~vv 240 (266)
T PHA02031 207 PRVLIFLDGDPAGVDGSAGAMRRLRPLLI-EGQVI 240 (266)
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHHHHcCC-ceEEE
Confidence 57999999999999998889999999998 77654
No 110
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=25.28 E-value=2.1e+02 Score=29.52 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=25.9
Q ss_pred CCCCeEEEEeC-----CCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 74 FKESGIIVGYD-----GRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 74 ~~~~~VvVg~D-----~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
+++.+|++..| .|. -..+++++..+...|+ +|...
T Consensus 185 l~g~kVaivg~~~~~~g~~--~~Va~Sl~~~~~~lG~-~v~~~ 224 (395)
T PRK07200 185 LKGKKIAMTWAYSPSYGKP--LSVPQGIIGLMTRFGM-DVTLA 224 (395)
T ss_pred cCCCEEEEEeccccccCCc--chHHHHHHHHHHHcCC-EEEEE
Confidence 34567888766 444 2667888888888999 99887
No 111
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=25.05 E-value=2.7e+02 Score=27.23 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=36.2
Q ss_pred CceEEEeCCCC-----------CC-HHHHHHHHH---HcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHHHH
Q psy1654 219 QVVITYSAMHG-----------VG-YPYVNQLFK---LFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKT 280 (459)
Q Consensus 219 ~~kVvvD~~~G-----------~~-~~~~~~ll~---~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~ 280 (459)
.+.|++|+.|+ .+ +.+++.+.+ ..|++- ++++.|.+|+..... -|+......++.+.+.
T Consensus 191 ~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDG-l~iEvHpdP~~AlsD--g~q~l~~~~~~~l~~~ 264 (281)
T PRK12457 191 DLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAG-LFLEAHPDPDRARCD--GPSALPLDQLEPFLSQ 264 (281)
T ss_pred CCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCE-EEEEecCCccccCCC--cccccCHHHHHHHHHH
Confidence 68999999996 32 446666664 468886 567667776665543 3444443444444333
No 112
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=24.89 E-value=3.6e+02 Score=23.21 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=49.7
Q ss_pred ccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCCh---HHHHHHHHHHHHhCCCcEEEE
Q psy1654 34 KFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNS---KRFAELTASVFLNGGVKRVFL 110 (459)
Q Consensus 34 ~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s---~~l~~a~~~gL~~~G~~~V~~ 110 (459)
.+.+.|..|.-+. ..-||..+...++.++..+.+.+. +.-.|.|--.+-..+ -.=+++.+.+|...|+ +|..
T Consensus 35 ~~~S~G~~g~kg~--kK~TpyAAq~aae~~~~~~~~~Gi--~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~gl-kI~~ 109 (132)
T PRK09607 35 AKSSGGMVVKADR--DESSPYAAMQAAEKAAEDAKEKGI--TGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGL-RIGR 109 (132)
T ss_pred EEecCcceeeCCC--ccCCHHHHHHHHHHHHHHHHHcCC--cEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCC-EEEE
Confidence 3345566666553 467898888888888888776432 122344433321111 1235667888999999 9888
Q ss_pred cCCCccch
Q psy1654 111 VSRVCPTP 118 (459)
Q Consensus 111 ~~g~~ptP 118 (459)
+...+|.|
T Consensus 110 I~DvTpiP 117 (132)
T PRK09607 110 IEDVTPIP 117 (132)
T ss_pred EEEcCCCC
Confidence 85566666
No 113
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=24.74 E-value=2.4e+02 Score=27.21 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=37.4
Q ss_pred CCceEEEeCCCC-----------CC-HHHHHHHHH---HcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHHHHH
Q psy1654 218 SQVVITYSAMHG-----------VG-YPYVNQLFK---LFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTA 281 (459)
Q Consensus 218 ~~~kVvvD~~~G-----------~~-~~~~~~ll~---~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v 281 (459)
..+.|++|+.|+ .+ +.+++.+.+ ..|++- ++++.|.+|+..... -|+......++.+.+.+
T Consensus 174 ~~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDG-l~iEvHpdP~~AlsD--g~q~l~~~~~~~ll~~l 249 (258)
T TIGR01362 174 LGCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDG-LFMETHPDPKNAKSD--GPNMLPLSELEGLLEKL 249 (258)
T ss_pred cCCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCE-EEEEeCCCccccCCC--ccccCCHHHHHHHHHHH
Confidence 368999999997 33 446666665 468885 567667777665543 34444444454444433
No 114
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=24.50 E-value=3.9e+02 Score=21.78 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=28.8
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCccchhHHHHHHHhcCCeEEEEeC
Q psy1654 82 GYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITA 137 (459)
Q Consensus 82 g~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP~~~~av~~~~~~gGi~ITa 137 (459)
+.|.+..+. ..++..|...|. +|+++...+|..-+--++.+.+.+ -|.|+.
T Consensus 8 ~~e~H~lG~---~~~~~~l~~~G~-~V~~lg~~~~~~~l~~~~~~~~pd-vV~iS~ 58 (119)
T cd02067 8 GGDGHDIGK---NIVARALRDAGF-EVIDLGVDVPPEEIVEAAKEEDAD-AIGLSG 58 (119)
T ss_pred CCchhhHHH---HHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHcCCC-EEEEec
Confidence 345554444 356778889999 999993233333333344554544 444444
No 115
>CHL00041 rps11 ribosomal protein S11
Probab=24.42 E-value=4.2e+02 Score=22.14 Aligned_cols=76 Identities=13% Similarity=0.231 Sum_probs=48.0
Q ss_pred cccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcC
Q psy1654 33 LKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVS 112 (459)
Q Consensus 33 ~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~ 112 (459)
+...+.|..|-=|. ..-||..+..+++.++..+.+.+- +.-.|.|- + .+ .-+++++.+|...|+ .|..+.
T Consensus 37 l~~~S~G~~gfKg~--rK~T~~Aa~~~a~~~~~~~~~~gi--~~v~I~ik--G--~G-~Gr~~~ir~l~~~gl-kI~~I~ 106 (116)
T CHL00041 37 ISWSSAGACGFKGA--RKGTPFAAQTAAENAIRTVIDQGM--KRAEVMIK--G--PG-LGRDTALRAIRRSGL-KLSSIR 106 (116)
T ss_pred EEEEecCceeeCCC--ccCCHHHHHHHHHHHHHHHHHcCC--cEEEEEEE--C--CC-CcHHHHHHHHHHCCC-EEEEEE
Confidence 33344555554443 367899999999999998876532 12234441 1 12 234677899999999 988774
Q ss_pred CCccch
Q psy1654 113 RVCPTP 118 (459)
Q Consensus 113 g~~ptP 118 (459)
..+|.|
T Consensus 107 D~Tpip 112 (116)
T CHL00041 107 DVTPMP 112 (116)
T ss_pred EcCCCC
Confidence 566666
No 116
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=24.36 E-value=1.9e+02 Score=25.24 Aligned_cols=52 Identities=8% Similarity=-0.027 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC-chhHHHHHHHHHhcCCcEEEEeCCCC
Q psy1654 233 PYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE-PSSLDLAVKTADQHGSTVILANDPDA 296 (459)
Q Consensus 233 ~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~-~~~l~~~~~~v~~~~adlGia~D~Dg 296 (459)
..+.+.|++.|.++ +...+.. .+|.+ +..-..+.+.|.+..+|+||.++|.|
T Consensus 14 ~~l~~~L~~~g~eV---~D~G~~~---------~~~~dYpd~a~~va~~V~~g~~~~GIliCGtG 66 (144)
T TIGR00689 14 SEIIEHLKQKGHEV---IDCGTLY---------DERVDYPDYAKLVADKVVAGEVSLGILICGTG 66 (144)
T ss_pred HHHHHHHHHCCCEE---EEcCCCC---------CCCCChHHHHHHHHHHHHcCCCceEEEEcCCc
Confidence 35566788889873 2222111 11222 33345556667666666666665533
No 117
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=24.27 E-value=3.8e+02 Score=28.46 Aligned_cols=84 Identities=14% Similarity=0.076 Sum_probs=49.8
Q ss_pred chHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCH--HH----HHHHHHHcCCCCeEEeccccccCCCCCCCCCCCC
Q psy1654 195 DSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGY--PY----VNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNP 268 (459)
Q Consensus 195 ~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~--~~----~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p 268 (459)
.+....+++.|.+.++. ..+.+++.|++.+..|-+. .+ +.++|++.|++. .++ ... .|
T Consensus 91 ~~~~~~w~~~~~~~~~~--~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~-~v~-~T~------------~~ 154 (481)
T PLN02958 91 DESRRLWCQKLRDYLDS--LGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQL-TIQ-ETK------------YQ 154 (481)
T ss_pred HHHHHHHHHHHHHHHhh--ccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeE-EEE-ecc------------Cc
Confidence 45677888888887652 2244567799998766543 33 445788888873 222 111 11
Q ss_pred CCchhHHHHHHHHHhcCCcEEEEeCCCCC
Q psy1654 269 EEPSSLDLAVKTADQHGSTVILANDPDAD 297 (459)
Q Consensus 269 ~~~~~l~~~~~~v~~~~adlGia~D~DgD 297 (459)
....++.+.+...++|..++.-|||-
T Consensus 155 ---ghA~~la~~~~~~~~D~VV~vGGDGT 180 (481)
T PLN02958 155 ---LHAKEVVRTMDLSKYDGIVCVSGDGI 180 (481)
T ss_pred ---cHHHHHHHHhhhcCCCEEEEEcCCCH
Confidence 11222333334566889999999884
No 118
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=23.69 E-value=2.1e+02 Score=27.60 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=37.5
Q ss_pred CceEEEeCCCCCCH----HHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHHHHH
Q psy1654 219 QVVITYSAMHGVGY----PYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTA 281 (459)
Q Consensus 219 ~~kVvvD~~~G~~~----~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v 281 (459)
++.|++|+.|..+. ..++..--.+|++- ++++.|..||-..+. ++..-.+..|..+.+.+
T Consensus 194 ~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~g-l~iE~H~t~d~a~~D--~~~sl~p~~l~~lv~~i 257 (260)
T TIGR01361 194 HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADG-LMIEVHPDPEKALSD--SKQQLTPEEFKRLVKEL 257 (260)
T ss_pred CCCEEEcCCCCCCccchHHHHHHHHHHcCCCE-EEEEeCCCccccCCc--chhcCCHHHHHHHHHHH
Confidence 57899999998772 33444456789974 456668888877753 34444444444444333
No 119
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=23.39 E-value=4.3e+02 Score=24.74 Aligned_cols=99 Identities=12% Similarity=0.028 Sum_probs=68.2
Q ss_pred cccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCc---EEE
Q psy1654 33 LKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVK---RVF 109 (459)
Q Consensus 33 ~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~---~V~ 109 (459)
+.+||+..-+.- ..|+..-.||=+|.+-|=.- +-+..+++.|++..|-.=.+++-+-|.+.|+. =+.
T Consensus 61 vVLGtsky~~~g-----~~N~yy~~Ri~aA~~ly~~g-----KV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~l 130 (235)
T COG2949 61 VVLGTSKYLAKG-----PPNRYYTYRIDAAIALYKAG-----KVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFL 130 (235)
T ss_pred EEEeccccccCC-----CccHhHHHHHHHHHHHHhcC-----CeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeee
Confidence 777877644332 46888899998888776321 13569999999988766666666667777762 156
Q ss_pred EcCCCccchhHHHHHHHhcCCeEEEEeCC-CCC
Q psy1654 110 LVSRVCPTPIIAYSIRALNLALGIMITAS-HNP 141 (459)
Q Consensus 110 ~~~g~~ptP~~~~av~~~~~~gGi~ITaS-hnp 141 (459)
|.-|.-+.--+.-|-+-++..--++||-- |++
T Consensus 131 DyAGFrTLDSvvRA~kVF~~~~ftIItQ~FHce 163 (235)
T COG2949 131 DYAGFRTLDSVVRARKVFGTNDFTIITQRFHCE 163 (235)
T ss_pred cccCccHHHHHHHHHHHcCcCcEEEEecccccH
Confidence 66576666666666666788777888775 654
No 120
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=23.36 E-value=2.9e+02 Score=26.78 Aligned_cols=63 Identities=16% Similarity=0.269 Sum_probs=37.4
Q ss_pred CCCceEEEeCCCC-----------CC-HHHHHHHHH---HcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHHHHH
Q psy1654 217 KSQVVITYSAMHG-----------VG-YPYVNQLFK---LFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTA 281 (459)
Q Consensus 217 ~~~~kVvvD~~~G-----------~~-~~~~~~ll~---~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v 281 (459)
...+.|++|+.|+ .+ +.+++.+.+ ..|++= ++++.|.+|+-.... -|+......++.+.+.+
T Consensus 181 ~~~lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadG-l~iEvHpdP~~AlsD--g~q~l~~~~~~~ll~~l 257 (264)
T PRK05198 181 ETGAPVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAG-LFIETHPDPDNALSD--GPNMLPLDKLEPLLEQL 257 (264)
T ss_pred hCCCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCE-EEEEeCCCccccCCC--ccccCCHHHHHHHHHHH
Confidence 3458999999997 33 446666654 468885 566667666655542 24443344455544443
Q ss_pred H
Q psy1654 282 D 282 (459)
Q Consensus 282 ~ 282 (459)
+
T Consensus 258 ~ 258 (264)
T PRK05198 258 K 258 (264)
T ss_pred H
Confidence 3
No 121
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=23.23 E-value=3.3e+02 Score=26.02 Aligned_cols=87 Identities=15% Similarity=0.058 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcE---EEEcCCCccchhHHHHHHH
Q psy1654 50 QMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKR---VFLVSRVCPTPIIAYSIRA 126 (459)
Q Consensus 50 ~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~---V~~~~g~~ptP~~~~av~~ 126 (459)
..|+....|+-+|+--|- + + +.+.++++.|.+..+..=+.++..-|.+.|+.. +.+-.|.-+---+.++..-
T Consensus 61 ~ps~~l~~Rl~~A~~LYk-~-g---k~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i 135 (239)
T PRK10834 61 VINQYYRYRIQGAINAYN-S-G---KVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKV 135 (239)
T ss_pred CcCHHHHHHHHHHHHHHH-h-C---CCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHH
Confidence 467888889998887553 2 1 146799999987655555667888899999931 2222233333345555555
Q ss_pred hcCCeEEEEeCC-CCC
Q psy1654 127 LNLALGIMITAS-HNP 141 (459)
Q Consensus 127 ~~~~gGi~ITaS-hnp 141 (459)
++...-+.||.. |.|
T Consensus 136 ~~~~~~iIVTq~fHm~ 151 (239)
T PRK10834 136 FDTNDFIIITQRFHCE 151 (239)
T ss_pred hCCCCEEEECCHHHHH
Confidence 666656777775 766
No 122
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=22.83 E-value=80 Score=20.15 Aligned_cols=17 Identities=29% Similarity=-0.052 Sum_probs=15.0
Q ss_pred EEEEeCCCCCeEEEEEe
Q psy1654 288 VILANDPDADRLAVAEK 304 (459)
Q Consensus 288 lGia~D~DgDRl~vvd~ 304 (459)
-|+++|++++++...|.
T Consensus 12 ~~la~d~~~~~lYw~D~ 28 (43)
T smart00135 12 NGLAVDWIEGRLYWTDW 28 (43)
T ss_pred CEEEEeecCCEEEEEeC
Confidence 47899999999999984
No 123
>KOG1322|consensus
Probab=22.73 E-value=5.7e+02 Score=25.77 Aligned_cols=108 Identities=17% Similarity=0.132 Sum_probs=69.0
Q ss_pred CCCcceecCCCCCCCCHH-HHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCc-EEEEcC--
Q psy1654 37 TAGIRGPMGVGFSQMNDV-VIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVK-RVFLVS-- 112 (459)
Q Consensus 37 t~GiRG~~~~~~~~ln~~-~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~-~V~~~~-- 112 (459)
.+||+-++-. +..|++ ...++..+|+..+ +-.|+-+.-+-+..-.=-.++++-++...-+ ..+.++
T Consensus 52 nsGi~~I~la--~~y~s~sl~~~~~k~y~~~l--------gVei~~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsD 121 (371)
T KOG1322|consen 52 NSGITKIVLA--TQYNSESLNRHLSKAYGKEL--------GVEILASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSD 121 (371)
T ss_pred hCCCcEEEEE--EecCcHHHHHHHHHHhhhcc--------ceEEEEEeccCCCcccchHHHHHHHhhhcCCCcEEEecCC
Confidence 3677777653 356677 7888888886655 4468888877765443333444443332220 344443
Q ss_pred CCccchhHHHHHH--HhcCCeEEEEeCCCCCCCCCceeeEcC-CCC
Q psy1654 113 RVCPTPIIAYSIR--ALNLALGIMITASHNPKEDNGYKLYDS-KGC 155 (459)
Q Consensus 113 g~~ptP~~~~av~--~~~~~gGi~ITaShnp~~~nGiK~~~~-~G~ 155 (459)
-.+--|..-+... ..++++-|++|-...|.+| |+-.+++ .|.
T Consensus 122 vi~~~p~~~~vqfH~~~gae~TI~~t~vdepSky-Gvv~~d~~~gr 166 (371)
T KOG1322|consen 122 VICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKY-GVVVIDEDTGR 166 (371)
T ss_pred eeecCCHHHHHHHHHhcCCceEEEEEeccCcccc-ceEEEecCCCc
Confidence 3555665555543 3588999999999999999 8888887 554
No 124
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=22.47 E-value=6e+02 Score=23.17 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=36.5
Q ss_pred CCeEEEEe---CCCCChHHHHHHHHHHHHhCCCcEEEEcCC-CccchhHHHHHHHhcCCeEEEEeC
Q psy1654 76 ESGIIVGY---DGRHNSKRFAELTASVFLNGGVKRVFLVSR-VCPTPIIAYSIRALNLALGIMITA 137 (459)
Q Consensus 76 ~~~VvVg~---D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g-~~ptP~~~~av~~~~~~gGi~ITa 137 (459)
.++|+++. |.+.-+ ++.++..|...|. +|+++ | .+|..-+--++.+.+.+ -|.++.
T Consensus 82 ~~~vl~~~~~gd~H~lG---~~~v~~~l~~~G~-~vi~l-G~~~p~~~l~~~~~~~~~d-~v~lS~ 141 (201)
T cd02070 82 KGKVVIGTVEGDIHDIG---KNLVATMLEANGF-EVIDL-GRDVPPEEFVEAVKEHKPD-ILGLSA 141 (201)
T ss_pred CCeEEEEecCCccchHH---HHHHHHHHHHCCC-EEEEC-CCCCCHHHHHHHHHHcCCC-EEEEec
Confidence 45777775 444444 4556778999999 99999 6 45555666666666654 444444
No 125
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
Probab=22.46 E-value=3.3e+02 Score=23.36 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCccch
Q psy1654 50 QMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTP 118 (459)
Q Consensus 50 ~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP 118 (459)
.=||..+...+...+....+.+. +.-.|.| +..- .-+++.+..|.++|+ .|-.+...+|.|
T Consensus 57 k~tpyAA~~aa~~aa~~a~e~Gi--~~v~v~v-kgpG----~GreaAiraL~~ag~-~i~~I~DvTPip 117 (129)
T COG0100 57 KSTPYAAQLAAEDAAKKAKEHGI--KSVEVKV-KGPG----PGREAAIRALAAAGL-KITRIEDVTPIP 117 (129)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCc--cEEEEEE-ECCC----CcHHHHHHHHHHccc-eEEEEEEcCCCC
Confidence 45788887777777777666432 1112333 2222 245677788889999 988875566655
No 126
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=22.41 E-value=3.4e+02 Score=23.98 Aligned_cols=66 Identities=6% Similarity=-0.064 Sum_probs=35.1
Q ss_pred eEEEeCCCCCCH--HHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCC-CCC-chhHHHHHHHHHhcCCcEEEEeCCCC
Q psy1654 221 VITYSAMHGVGY--PYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPN-PEE-PSSLDLAVKTADQHGSTVILANDPDA 296 (459)
Q Consensus 221 kVvvD~~~G~~~--~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~-p~~-~~~l~~~~~~v~~~~adlGia~D~Dg 296 (459)
||++-|-|.-.. ..+..-|++.|.++ + ++-.. .++ +.+ +..-..+.+.|...++|+|+.++|-|
T Consensus 2 kIaig~Dhag~~lK~~I~~~Lk~~g~~v---~--D~G~~-------~~~~~~dyp~~a~~va~~v~~~~~d~GIliCGTG 69 (151)
T COG0698 2 KIAIGSDHAGYELKEIIIDHLKSKGYEV---I--DFGTY-------TDEGSVDYPDYAKKVAEAVLNGEADLGILICGTG 69 (151)
T ss_pred cEEEEcCcccHHHHHHHHHHHHHCCCEE---E--ecccc-------CCCCCcchHHHHHHHHHHHHcCCCCeeEEEecCC
Confidence 677777775542 35566677888874 2 21110 011 111 22233445556666788888776655
Q ss_pred Ce
Q psy1654 297 DR 298 (459)
Q Consensus 297 DR 298 (459)
-=
T Consensus 70 iG 71 (151)
T COG0698 70 IG 71 (151)
T ss_pred hh
Confidence 43
No 127
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=22.30 E-value=1.7e+02 Score=26.08 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=39.3
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEEEEcCCCccchhHHHHHHHh-cCCeEEEEeCCCCCCC
Q psy1654 84 DGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRAL-NLALGIMITASHNPKE 143 (459)
Q Consensus 84 D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP~~~~av~~~-~~~gGi~ITaShnp~~ 143 (459)
-.|.++..|...+.+-+...|. +|+.+ |..|. ++.-+...+ ..-.|+.|.+.|+|+-
T Consensus 26 ~~r~~g~dl~~~ll~~~~~~~~-~v~ll-G~~~~-~~~~~~~~l~~~yp~l~i~g~~~g~~ 83 (171)
T cd06533 26 PERVTGSDLMPALLELAAQKGL-RVFLL-GAKPE-VLEKAAERLRARYPGLKIVGYHHGYF 83 (171)
T ss_pred CcccCcHHHHHHHHHHHHHcCC-eEEEE-CCCHH-HHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4578889999999999999999 99999 64443 333333222 2334788877776653
No 128
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=21.93 E-value=3.3e+02 Score=24.26 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=40.0
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEEEEcCCCccchhHHHHHHHhcC-CeEEEEeCCCCCCC
Q psy1654 85 GRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNL-ALGIMITASHNPKE 143 (459)
Q Consensus 85 ~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP~~~~av~~~~~-~gGi~ITaShnp~~ 143 (459)
.|.++..|...+.+-+...|. +|+.+ |-.+ .++.-+...+.. -.|+.|.+.|+|+-
T Consensus 29 ~rv~g~dl~~~l~~~~~~~~~-~ifll-G~~~-~~~~~~~~~l~~~yP~l~ivg~~~g~f 85 (172)
T PF03808_consen 29 ERVTGSDLFPDLLRRAEQRGK-RIFLL-GGSE-EVLEKAAANLRRRYPGLRIVGYHHGYF 85 (172)
T ss_pred cccCHHHHHHHHHHHHHHcCC-eEEEE-eCCH-HHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 678999999999999999999 99999 6443 344444444433 23777877776654
No 129
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=21.74 E-value=7.6e+02 Score=24.59 Aligned_cols=28 Identities=4% Similarity=-0.102 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHhcccccCccCCCCceEEEeCCCC
Q psy1654 196 SVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHG 229 (459)
Q Consensus 196 ~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G 229 (459)
.+..+|...|.+.+. .++.+|++|+.+.
T Consensus 142 g~~~d~y~~li~~~~------~~g~~vilD~Sg~ 169 (310)
T COG1105 142 GVPPDAYAELIRILR------QQGAKVILDTSGE 169 (310)
T ss_pred CCCHHHHHHHHHHHH------hcCCeEEEECChH
Confidence 344555566665543 4578999999653
No 130
>COG0860 AmiC N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]
Probab=21.61 E-value=3.4e+02 Score=25.72 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=42.6
Q ss_pred CCCceEEEeCCCCCC-------------------HHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHH
Q psy1654 217 KSQVVITYSAMHGVG-------------------YPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLA 277 (459)
Q Consensus 217 ~~~~kVvvD~~~G~~-------------------~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~ 277 (459)
.+..+|++|++||-. +..+...|++.|+++ +. -. .+..| .+|.+-
T Consensus 40 ~~~~~I~IDpGHGG~D~GAig~~g~~EKdvtL~ia~~l~~~L~~~g~~v-~m---TR-~~D~~-----------~~l~~R 103 (231)
T COG0860 40 LGGKTIVIDPGHGGKDPGAIGPNGTLEKDVTLDIAKRLRDLLRAEGVEV-VL---TR-TSDTF-----------VSLNER 103 (231)
T ss_pred CCCeEEEEcCCCCCCCCCccCCCCCccceeHHHHHHHHHHHHHhCCCEE-EE---ec-CCCCc-----------CCHHHH
Confidence 456899999999731 235677788889764 22 11 11233 245555
Q ss_pred HHHHHhcCCcEEEEeCCCCC
Q psy1654 278 VKTADQHGSTVILANDPDAD 297 (459)
Q Consensus 278 ~~~v~~~~adlGia~D~DgD 297 (459)
.+++.+.++|+-+.+-.|+=
T Consensus 104 ~~~A~~~~adlfiSIH~na~ 123 (231)
T COG0860 104 VAIANASGADLFVSIHANAA 123 (231)
T ss_pred HHHHHhcCCCEEEEEecCCC
Confidence 67778889999999876653
No 131
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=21.55 E-value=1.8e+02 Score=28.73 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=27.5
Q ss_pred hhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 69 KHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 69 ~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
+.++..++.+|++-.|.+++ ..+++++.++...|+ +|...
T Consensus 143 e~~g~l~g~~va~vGD~~~~--~v~~Sl~~~~a~~g~-~v~~~ 182 (301)
T TIGR00670 143 EEFGRLDGLKIALVGDLKYG--RTVHSLAEALTRFGV-EVYLI 182 (301)
T ss_pred HHhCCCCCCEEEEEccCCCC--cHHHHHHHHHHHcCC-EEEEE
Confidence 33334456788888887644 335667777788899 98877
No 132
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=21.54 E-value=3e+02 Score=27.05 Aligned_cols=59 Identities=8% Similarity=0.084 Sum_probs=36.0
Q ss_pred CCCceEEEeCCCC----------------CC-HHHHHHHHH---HcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHH
Q psy1654 217 KSQVVITYSAMHG----------------VG-YPYVNQLFK---LFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDL 276 (459)
Q Consensus 217 ~~~~kVvvD~~~G----------------~~-~~~~~~ll~---~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~ 276 (459)
...+.|++|+.|+ .+ +.+++.+.+ ..|++- ++++.|.+|+..... -|+......++.
T Consensus 187 ~~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDG-lfiEvHpdP~~AlsD--g~q~l~~~~l~~ 263 (290)
T PLN03033 187 EANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDG-IFMEVHDDPLSAPVD--GPTQWPLRHLEE 263 (290)
T ss_pred hcCCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCE-EEEEecCCccccCCC--cccCcCHHHHHH
Confidence 4578999999996 22 456666665 468885 567667666655543 344443344444
Q ss_pred HH
Q psy1654 277 AV 278 (459)
Q Consensus 277 ~~ 278 (459)
+.
T Consensus 264 ll 265 (290)
T PLN03033 264 LL 265 (290)
T ss_pred HH
Confidence 43
No 133
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=21.09 E-value=3.3e+02 Score=27.34 Aligned_cols=49 Identities=12% Similarity=0.026 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEE
Q psy1654 58 QTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFL 110 (459)
Q Consensus 58 ~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~ 110 (459)
.-+.+++.++.+.+. .++|++=++....++.+.+++...|.+.|. ++..
T Consensus 133 ~q~~~~~~~l~~~~~---~k~v~ii~~~~~yg~~~~~~~~~~l~~~G~-~~~~ 181 (366)
T COG0683 133 QQAAAAADYLVKKGG---KKRVAIIGDDYAYGEGLADAFKAALKALGG-EVVV 181 (366)
T ss_pred HHHHHHHHHHHHhcC---CcEEEEEeCCCCcchhHHHHHHHHHHhCCC-eEEE
Confidence 467788888877652 248999999999999999999999999999 7543
No 134
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=21.00 E-value=8.1e+02 Score=24.36 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCchhH
Q psy1654 195 DSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSL 274 (459)
Q Consensus 195 ~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l 274 (459)
.+.+..|++.+.+..+ ..+++|+.+..+..-.-+..+++|+.-..++ |. -|.+...
T Consensus 81 ~eam~k~I~~v~~~~d---------~Pl~IDSt~p~a~eaaLk~~~e~G~~gR~Ii--NS-----------In~e~~~-- 136 (308)
T PRK00979 81 PEAMEKYIDFVSEITD---------LPFLIDSTSPEARIAAAKYATELGLADRAIY--NS-----------INPSIEE-- 136 (308)
T ss_pred HHHHHHHHHHHHhcCC---------CCEEEeCCCHHHHHHHHHHhhhcCCCCceEE--Ee-----------ccCCCCH--
Confidence 4677888888877543 6789999887766555555556664210122 22 1222211
Q ss_pred HHHHHHHHhcCCc--EEEEeCC
Q psy1654 275 DLAVKTADQHGST--VILANDP 294 (459)
Q Consensus 275 ~~~~~~v~~~~ad--lGia~D~ 294 (459)
+. ..++++.++. +++++|+
T Consensus 137 ee-l~llk~yg~aavIvLa~d~ 157 (308)
T PRK00979 137 EE-IEALKESDIKAAIVLAFDP 157 (308)
T ss_pred HH-HHHHHHhCCceEEEEEcCC
Confidence 22 3567788744 6777876
No 135
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=20.90 E-value=2.8e+02 Score=26.11 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=30.5
Q ss_pred CeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 77 SGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 77 ~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
++|++++|+-.+++..+.-.+..|...|+ +|..+
T Consensus 155 ~~Iil~~D~D~AG~~Aa~r~~~~L~~~G~-~v~vv 188 (218)
T TIGR00646 155 EKIFICFDNDFAGKNAAANLEEILKKAGF-ITKVI 188 (218)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHCCC-eEEEE
Confidence 57999999999999999999999999999 87654
No 136
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=20.89 E-value=2.6e+02 Score=28.11 Aligned_cols=39 Identities=21% Similarity=0.138 Sum_probs=28.6
Q ss_pred hhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 69 KHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 69 ~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
+.++.+++.+|++-.|.+. . .+++++.++...|+ +|..+
T Consensus 148 e~~g~l~g~~va~vGd~~~--~-v~~Sl~~~~~~~g~-~v~~~ 186 (331)
T PRK02102 148 EHFGPLKGLKLAYVGDGRN--N-MANSLMVGGAKLGM-DVRIC 186 (331)
T ss_pred HHhCCCCCCEEEEECCCcc--c-HHHHHHHHHHHcCC-EEEEE
Confidence 3344455778877778863 2 77888888889999 99877
No 137
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=20.79 E-value=1.3e+02 Score=28.68 Aligned_cols=55 Identities=22% Similarity=0.195 Sum_probs=38.8
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEEEEcCCCccchhHHHHHHHhcCCeEEEEeCCCCCC
Q psy1654 85 GRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPK 142 (459)
Q Consensus 85 ~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP~~~~av~~~~~~gGi~ITaShnp~ 142 (459)
.|.++..|...+.+.....|. +|+.+ |-.|. ++.-+...+...-|+.|.+.|+|+
T Consensus 86 ~Rv~G~dl~~~ll~~~~~~~~-~v~ll-G~~~~-v~~~a~~~l~~~y~l~i~g~~~Gy 140 (243)
T PRK03692 86 SRVAGADLWEALMARAGKEGT-PVFLV-GGKPE-VLAQTEAKLRTQWNVNIVGSQDGY 140 (243)
T ss_pred CeeChHHHHHHHHHHHHhcCC-eEEEE-CCCHH-HHHHHHHHHHHHhCCEEEEEeCCC
Confidence 478899999999998888999 99999 64443 555555554433367776666543
No 138
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=20.57 E-value=3.7e+02 Score=24.74 Aligned_cols=46 Identities=11% Similarity=-0.006 Sum_probs=35.7
Q ss_pred CCeEEE--EeCCCCChHHHHHHHHHHHHh--CCCcEEEEcCCCccchhHHHHH
Q psy1654 76 ESGIIV--GYDGRHNSKRFAELTASVFLN--GGVKRVFLVSRVCPTPIIAYSI 124 (459)
Q Consensus 76 ~~~VvV--g~D~R~~s~~l~~a~~~gL~~--~G~~~V~~~~g~~ptP~~~~av 124 (459)
+.++.+ +.+.|++...+.+++.+.|.. .|. +|+|+ + +-|..+....
T Consensus 22 g~~l~~~~~~~~Rp~~d~v~e~l~~~l~~~~~~~-~vLDl-~-~GsG~l~l~~ 71 (199)
T PRK10909 22 GRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDA-RCLDC-F-AGSGALGLEA 71 (199)
T ss_pred CCEeCCCCCCCcCcCCHHHHHHHHHHHhhhcCCC-EEEEc-C-CCccHHHHHH
Confidence 566766 667899999999999988863 588 99999 4 6677777643
No 139
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=20.25 E-value=2.2e+02 Score=25.10 Aligned_cols=84 Identities=11% Similarity=0.069 Sum_probs=47.7
Q ss_pred cCCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEE----EeCCCCChHHHHHHHHHHHHhCCC
Q psy1654 30 LKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIV----GYDGRHNSKRFAELTASVFLNGGV 105 (459)
Q Consensus 30 ~~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvV----g~D~R~~s~~l~~a~~~gL~~~G~ 105 (459)
+..+.+.++|-.|-=+. ...=||..+...++.++..+.+.+. +.-.|.| |.-.+-.+ .=+++.+.+|...|+
T Consensus 49 G~~~~w~SsG~~gfKg~-r~KsTpyAAq~aa~~~a~k~~~~Gi--~~v~V~vr~~gg~~~kg~G-pGr~~airaL~~~gl 124 (149)
T PTZ00129 49 GRETLVRVTGGMKVKAD-RDESSPYAAMMAAQDVAARCKELGI--NALHIKLRATGGVRTKTPG-PGAQAALRALARAGL 124 (149)
T ss_pred CCEEEEEecCcceeccc-ccCCCHHHHHHHHHHHHHHHHHcCC--eEEEEEEEecCCCCCCCCC-CCHHHHHHHHHHCCC
Confidence 33344555554444332 1155788888888888887766432 1223555 11111111 224566888889999
Q ss_pred cEEEEcCCCccch
Q psy1654 106 KRVFLVSRVCPTP 118 (459)
Q Consensus 106 ~~V~~~~g~~ptP 118 (459)
+|..+...+|.|
T Consensus 125 -kI~~I~DvTPiP 136 (149)
T PTZ00129 125 -KIGRIEDVTPIP 136 (149)
T ss_pred -EEEEEEecCCCC
Confidence 888875566666
No 140
>PF04868 PDE6_gamma: Retinal cGMP phosphodiesterase, gamma subunit; InterPro: IPR006952 Retinal rod and cone cGMP phosphodiesterases function as the effector enzymes in the vertebrate visual transduction cascade. This family represents the inhibitory gamma subunit [], which is also expressed outside retinal tissues and has been shown to interact with the G-protein-coupled receptor kinase 2 signalling system to regulate the epidermal growth factor- and thrombin-dependent stimulation of p42/p44 mitogen-activated protein kinase in human embryonic kidney 293 cells [].; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0030553 cGMP binding, 0007601 visual perception; PDB: 2JU4_A 1FQJ_C 3JWR_D.
Probab=20.23 E-value=41 Score=25.80 Aligned_cols=7 Identities=29% Similarity=0.230 Sum_probs=2.7
Q ss_pred ccCCCCc
Q psy1654 449 FIDPKSK 455 (459)
Q Consensus 449 ~~~~~~~ 455 (459)
++|||++
T Consensus 62 vicpwea 68 (83)
T PF04868_consen 62 VICPWEA 68 (83)
T ss_dssp TT-CCCC
T ss_pred EEcchHh
Confidence 4445443
Done!