Query psy1654
Match_columns 459
No_of_seqs 155 out of 1345
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 23:51:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tuo_A Putative phosphomannomu 100.0 6E-77 2E-81 619.7 33.4 379 28-454 7-393 (464)
2 2f7l_A 455AA long hypothetical 100.0 1.6E-77 5.4E-82 623.2 28.5 380 33-455 3-383 (455)
3 3pdk_A Phosphoglucosamine muta 100.0 4E-76 1.4E-80 612.6 33.6 377 32-454 23-400 (469)
4 1wqa_A Phospho-sugar mutase; a 100.0 1.1E-76 3.9E-81 616.8 28.8 380 33-454 3-382 (455)
5 3uw2_A Phosphoglucomutase/phos 100.0 6.3E-76 2.2E-80 612.5 31.5 376 28-455 21-405 (485)
6 1p5d_X PMM, phosphomannomutase 100.0 7.1E-76 2.4E-80 612.0 31.5 375 30-455 9-384 (463)
7 3i3w_A Phosphoglucosamine muta 100.0 1.7E-75 5.9E-80 604.6 26.8 373 33-453 3-377 (443)
8 3na5_A Phosphoglucomutase; iso 100.0 1.3E-73 4.4E-78 605.9 32.0 402 16-454 48-479 (570)
9 2z0f_A Putative phosphoglucomu 100.0 1.1E-72 3.9E-77 596.4 23.4 404 14-454 6-435 (524)
10 4hjh_A Phosphomannomutase; str 100.0 7E-71 2.4E-75 576.4 24.1 376 30-455 7-394 (481)
11 3pmg_A Alpha-D-glucose-1,6-bis 100.0 2.9E-70 1E-74 579.7 18.7 387 32-455 13-436 (561)
12 1kfi_A Phosphoglucomutase 1; p 100.0 1.3E-68 4.3E-73 570.1 25.0 380 31-446 17-446 (572)
13 2dka_A Phosphoacetylglucosamin 100.0 2.6E-50 8.9E-55 426.4 14.5 347 30-455 19-476 (544)
14 2dka_A Phosphoacetylglucosamin 97.4 0.00014 4.7E-09 76.6 5.3 52 76-129 132-184 (544)
15 1o1x_A Ribose-5-phosphate isom 89.3 1.5 5.3E-05 37.5 8.4 58 77-138 13-79 (155)
16 2vvr_A Ribose-5-phosphate isom 87.7 1.5 5.2E-05 37.3 7.3 57 78-138 3-68 (149)
17 2vvp_A Ribose-5-phosphate isom 87.2 1.8 6.2E-05 37.4 7.6 57 78-138 5-71 (162)
18 3he8_A Ribose-5-phosphate isom 86.1 2.9 0.0001 35.5 8.2 57 78-138 2-67 (149)
19 3ph3_A Ribose-5-phosphate isom 84.6 3.7 0.00013 35.6 8.2 58 77-138 21-87 (169)
20 3s5p_A Ribose 5-phosphate isom 81.1 4.7 0.00016 34.8 7.4 58 77-138 22-88 (166)
21 4em8_A Ribose 5-phosphate isom 76.8 9.6 0.00033 32.3 7.9 58 77-138 8-73 (148)
22 3k7p_A Ribose 5-phosphate isom 73.0 7.7 0.00026 33.9 6.5 57 78-138 24-91 (179)
23 3sgw_A Ribose 5-phosphate isom 72.7 9.1 0.00031 33.6 7.0 58 77-138 30-99 (184)
24 2ppw_A Conserved domain protei 63.8 14 0.00049 33.2 6.5 37 77-115 4-42 (216)
25 3ono_A Ribose/galactose isomer 59.7 13 0.00045 33.4 5.5 33 77-114 4-41 (214)
26 2ehp_A AQ_1627 protein; putati 57.6 55 0.0019 25.6 7.9 62 39-112 13-74 (126)
27 4dik_A Flavoprotein; TM0755, e 52.1 76 0.0026 31.4 10.4 76 56-137 248-327 (410)
28 1fqj_C Retinal ROD rhodopsin-s 51.4 3.1 0.00011 26.3 -0.0 9 447-455 19-27 (42)
29 3fni_A Putative diflavin flavo 47.4 77 0.0026 26.5 8.4 35 76-111 4-39 (159)
30 2vvr_A Ribose-5-phosphate isom 47.0 38 0.0013 28.6 6.0 63 220-294 2-67 (149)
31 3ph3_A Ribose-5-phosphate isom 44.6 47 0.0016 28.6 6.4 66 218-295 19-87 (169)
32 1y80_A Predicted cobalamin bin 43.9 84 0.0029 27.6 8.4 58 76-138 88-148 (210)
33 3he8_A Ribose-5-phosphate isom 42.1 56 0.0019 27.6 6.4 63 220-294 1-66 (149)
34 3s5p_A Ribose 5-phosphate isom 41.7 48 0.0016 28.5 5.9 67 218-296 20-89 (166)
35 2hc5_A ORF 99, hypothetical pr 41.4 34 0.0012 27.6 4.8 54 271-325 41-97 (117)
36 3c5y_A Ribose/galactose isomer 40.4 38 0.0013 30.7 5.3 58 79-138 24-93 (231)
37 3qay_A Endolysin; amidase A/B 40.2 87 0.003 27.0 7.7 67 220-297 2-89 (180)
38 1ccw_A Protein (glutamate muta 40.2 62 0.0021 26.5 6.4 56 76-137 3-62 (137)
39 2vqe_K 30S ribosomal protein S 39.0 1.1E+02 0.0037 25.1 7.5 76 33-118 40-115 (129)
40 2yxb_A Coenzyme B12-dependent 38.3 86 0.0029 26.5 7.2 56 76-137 18-77 (161)
41 2ppw_A Conserved domain protei 37.7 59 0.002 29.2 6.1 67 219-294 3-76 (216)
42 2i2x_B MTAC, methyltransferase 35.4 97 0.0033 28.3 7.6 57 76-138 123-183 (258)
43 3k2t_A LMO2511 protein; lister 35.0 1.1E+02 0.0038 21.2 6.3 45 272-316 13-57 (57)
44 3ka5_A Ribosome-associated pro 32.5 1.4E+02 0.0046 21.4 6.5 45 272-316 13-57 (65)
45 3hly_A Flavodoxin-like domain; 32.4 1.3E+02 0.0046 24.9 7.5 32 79-111 3-35 (161)
46 1o1x_A Ribose-5-phosphate isom 30.7 92 0.0031 26.4 5.9 67 218-296 11-80 (155)
47 3k7p_A Ribose 5-phosphate isom 30.2 1.1E+02 0.0038 26.5 6.4 63 220-294 23-90 (179)
48 3ezx_A MMCP 1, monomethylamine 27.9 1.8E+02 0.0061 25.8 7.8 54 76-135 92-149 (215)
49 3lyv_A Ribosome-associated fac 27.5 1.5E+02 0.0052 21.2 5.7 46 271-316 13-58 (66)
50 2nwr_A 2-dehydro-3-deoxyphosph 26.2 89 0.003 29.0 5.5 59 221-282 178-251 (267)
51 3sho_A Transcriptional regulat 25.8 2.5E+02 0.0084 23.5 8.2 71 3-111 1-71 (187)
52 1zq6_A Otcase, ornithine carba 25.6 77 0.0026 30.8 5.1 37 74-111 188-226 (359)
53 1e5d_A Rubredoxin\:oxygen oxid 25.0 4.1E+02 0.014 25.2 10.6 53 54-111 234-287 (402)
54 3sgw_A Ribose 5-phosphate isom 24.3 1.1E+02 0.0039 26.6 5.4 67 218-295 28-99 (184)
55 2vvp_A Ribose-5-phosphate isom 23.0 1.5E+02 0.005 25.3 5.8 63 220-294 4-70 (162)
56 3brc_A Conserved protein of un 22.8 2.3E+02 0.008 23.5 6.7 83 220-315 37-124 (156)
57 3sz8_A 2-dehydro-3-deoxyphosph 22.6 1.3E+02 0.0044 28.2 5.9 61 219-282 195-270 (285)
58 4amu_A Ornithine carbamoyltran 22.4 1.2E+02 0.004 29.6 5.7 40 68-111 172-211 (365)
59 4ep1_A Otcase, ornithine carba 22.4 89 0.0031 30.1 4.9 47 68-119 171-219 (340)
60 3ono_A Ribose/galactose isomer 21.8 1.4E+02 0.0049 26.6 5.7 66 219-294 3-75 (214)
61 2h54_A Caspase-1; allosteric s 21.5 3.8E+02 0.013 22.9 8.9 71 78-154 46-129 (178)
62 3bul_A Methionine synthase; tr 20.9 2.3E+02 0.0078 29.4 7.9 59 76-139 98-159 (579)
63 1zco_A 2-dehydro-3-deoxyphosph 20.8 1.8E+02 0.0061 26.7 6.5 60 220-283 193-257 (262)
64 3r8n_K 30S ribosomal protein S 20.8 1.9E+02 0.0066 23.1 5.8 61 50-118 45-105 (117)
65 4a8t_A Putrescine carbamoyltra 20.7 1.5E+02 0.005 28.6 6.0 65 43-118 143-214 (339)
66 1vlv_A Otcase, ornithine carba 20.5 1.5E+02 0.0051 28.3 6.0 39 69-111 160-198 (325)
67 2q62_A ARSH; alpha/beta, flavo 20.3 2.9E+02 0.0098 25.0 7.8 33 78-111 37-71 (247)
68 4h15_A Short chain alcohol deh 20.3 4.8E+02 0.016 23.5 10.6 99 23-125 70-196 (261)
69 2jtq_A Phage shock protein E; 20.2 1.1E+02 0.0036 22.2 4.0 29 218-246 40-68 (85)
No 1
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus}
Probab=100.00 E-value=6e-77 Score=619.67 Aligned_cols=379 Identities=21% Similarity=0.279 Sum_probs=325.2
Q ss_pred hhcCCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcE
Q psy1654 28 LFLKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKR 107 (459)
Q Consensus 28 ~~~~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~ 107 (459)
+|.++++|||+||||++++ +|||+++.++|+|||+++.+++ +++|+||||+|.+|++|++++++||+++|+ +
T Consensus 7 ~~~~~l~FGt~GiRG~~~~---~lt~~~v~~~~~a~~~~l~~~~----~~~VvVG~D~R~ss~~~~~a~a~gl~~~G~-~ 78 (464)
T 1tuo_A 7 EMSAPIRFGTEGFRGVIAR---EFTFATLHRLAEAYGRHLLERG----GGLVVVGHDTRFLADAFARALSGHLAGMGL-K 78 (464)
T ss_dssp -CCCCCCCCSSSEEEEBTT---TBCHHHHHHHHHHHHHHHHHTT----CCEEEEEECSSTTHHHHHHHHHHHHHHHTC-E
T ss_pred cccCCccccCCCcceecCC---CcCHHHHHHHHHHHHHHHHHhC----CCeEEEeeCCCCCHHHHHHHHHHHHHHCCC-e
Confidence 3667899999999999998 8999999999999999998753 468999999999999999999999999999 9
Q ss_pred EE-EcCCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhcc
Q psy1654 108 VF-LVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIR 186 (459)
Q Consensus 108 V~-~~~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~ 186 (459)
|+ +. |.+|||+++|+++++++++||||||||||++||||||++++|.+++++ .+++|++.+. ...+. ..
T Consensus 79 V~~~~-g~~pTP~~~~av~~~~~~~GImITASHNP~~~NGiK~~~~~G~~i~~~----~~~~Ie~~~~--~~~~~--~~- 148 (464)
T 1tuo_A 79 VVLLK-GPVPTPLLSFAVRHLKAAGGAMLTASHNPPQYLGVKFKDATGGPIAQE----EAKAIEALVP--EEARA--LE- 148 (464)
T ss_dssp EEEES-SSCCHHHHHHHHHHTTCSEEEEECCTTSCTTEEEEEEEETTTEECCHH----HHHHHHHTCC--SCCCC--CC-
T ss_pred EEEcC-CCCCHHHHHHHHHHhCCCceEEEcCCCCCchHCCEEEEcCCCCcCChH----HHHHHHHHhc--CCccc--cC-
Confidence 96 67 999999999999999999999999999999999999999999999755 4555665543 11111 11
Q ss_pred CCCCCCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCC--CCeEEeccccccCCCCCCCC
Q psy1654 187 DQIQPCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKF--KPLVLVDAQCSPDPEFPTVR 264 (459)
Q Consensus 187 ~~~~~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~--~~~~~v~~~~~pd~~f~~~~ 264 (459)
+.+. ..++.+.|++++++.++ .+.++.+++|||+||+||+++.+++++|++||| ++ +.+|++|||.||++
T Consensus 149 -g~~~--~~d~~~~Y~~~l~~~~~-~~~i~~~~lkivvd~~nG~~~~~~~~~l~~lG~~~~v---~~~~~~pDg~Fp~~- 220 (464)
T 1tuo_A 149 -GAYE--TLDLREAYFEALKAHLD-LKALSGFSGVLYHDSMGGAGAGFLKGFLRHVGLEIPV---RPIREEPHPLFHGV- 220 (464)
T ss_dssp -CCCE--EECCHHHHHHHHHTTSC-HHHHTTCCSCEEEECTTSTTTTHHHHHHHHTTCCCCE---EEESCSCCTTGGGS-
T ss_pred -CceE--EcCcHHHHHHHHhhhcC-hhhccccCCEEEEECCCCcHHHHHHHHHHHCCCCceE---EEEecccCCCCCCC-
Confidence 3332 24788999999999876 344566799999999999999999999999999 63 34599999999985
Q ss_pred CCCCCCchhHHHHHHHHH-hcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCce
Q psy1654 265 FPNPEEPSSLDLAVKTAD-QHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYY 343 (459)
Q Consensus 265 ~p~p~~~~~l~~~~~~v~-~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~ 343 (459)
+|||+. .++..+.+.++ +.++|+|+++||||||++++| ++| ++++||++++|+++++++. ++ +..
T Consensus 221 ~p~p~~-~~~~~l~~~v~~~~~adlgia~DgDaDR~~vvd--~~G--~~l~gd~i~~Lla~~l~~~----~~-----~~~ 286 (464)
T 1tuo_A 221 NPEPIP-KNLGVTLAVLGPETPPSFAVATDGDADRVGVVL--PGG--VFFNPHQVLTTLALYRFRK----GH-----RGR 286 (464)
T ss_dssp CSCCSG-GGCHHHHHHHTTCCTTCEEEEECTTSSBEEEEE--TTT--EEECHHHHHHHHHHHHHHT----TC-----CSE
T ss_pred CcCCCc-hhHHHHHHHHHhccCCCEEEEECCCCCeEEEEe--CCC--EEECHHHHHHHHHHHHHhh----CC-----CCe
Confidence 799995 67888888888 999999999999999999998 489 7899999999999998763 22 235
Q ss_pred EEEeccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHH
Q psy1654 344 FLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAY 423 (459)
Q Consensus 344 vv~~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~ 423 (459)
||.|++||.+++++++++|+++++|||||||++++|++ .+++||||+|||++|+++.+++|||+++++++|+++.
T Consensus 287 vv~tv~ss~~l~~~a~~~g~~~~~t~tG~k~i~~~m~~-----~~~~~ggE~Sgg~~~~~~~~~~Dgi~a~l~~le~~a~ 361 (464)
T 1tuo_A 287 AVKNFAVTWLLDRLGERLGFGVTTTPVGFKWIKEEFLK-----GDCFIGGEESGGVGYPEHLPERDGILTSLLLLESVAA 361 (464)
T ss_dssp EEEETTSCTHHHHHHHHHTCCEEEECSSHHHHHHHHTT-----TCEEEEECTTSBEEETTTEEEECHHHHHHHHHHHHHH
T ss_pred EEEeecchHHHHHHHHHcCCeEEEecCcHHHHHHHHHh-----cCcEEEEccceeEEECCcCcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998864 3789999999999999999999999999999999984
Q ss_pred HHhCCCCHHHHHHHHHHhcc-cc---cCcccCCCC
Q psy1654 424 LDSQGKDLHQLLADVYDKGN-CI---TGGFIDPKS 454 (459)
Q Consensus 424 ~~~~~~~Ls~ll~~lp~~y~-~~---~~~~~~~~~ 454 (459)
+|++|++++++||++|+ .+ +..+.|||.
T Consensus 362 ---~g~~L~ell~~l~~~~~~~~~~~~~~v~~~~~ 393 (464)
T 1tuo_A 362 ---TGKDLAEQFKEVEALTGLTHAYDRLDLPLKAP 393 (464)
T ss_dssp ---HSCCHHHHHHHHHHHHTCCCEEEEEC------
T ss_pred ---hCCCHHHHHHHHHHHcCccccceEEeEEeCCH
Confidence 89999999999999998 33 445778775
No 2
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.6e-77 Score=623.21 Aligned_cols=380 Identities=23% Similarity=0.317 Sum_probs=329.8
Q ss_pred cccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcC
Q psy1654 33 LKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVS 112 (459)
Q Consensus 33 ~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~ 112 (459)
.+|||+||||++|+ +|||+++.++|+|||+++.+ +++|+||||+|.+|++|++++++||+++|+ +|+++
T Consensus 3 ~~Fgt~GiRG~~~~---~lt~~~v~~~~~a~~~~l~~------~~~VvIG~D~R~ss~~~~~a~a~gl~~~G~-~V~~~- 71 (455)
T 2f7l_A 3 KLFGTDGVRGIVNK---ELTPELVLKLSKAIGTFFGK------NSKILVGRDVRAGGDMLVKIVEGGLLSVGV-EVYDG- 71 (455)
T ss_dssp SSCCSSSEEEEBTT---TBCHHHHHHHHHHHHHHHCT------TCEEEEEECSCTTHHHHHHHHHHHHHHTTC-EEEEE-
T ss_pred CcccCCCeeeecCC---CcCHHHHHHHHHHHHHHHcc------CCeEEEEECCCCCHHHHHHHHHHHHHHCCC-cEEEc-
Confidence 58999999999998 89999999999999999965 468999999999999999999999999999 99999
Q ss_pred CCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccCC-CCC
Q psy1654 113 RVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQ-IQP 191 (459)
Q Consensus 113 g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~~-~~~ 191 (459)
|.+|||+++|+++++++++||||||||||++||||||++++|.+++++.+++|++.+++.- .....+. .. + .+.
T Consensus 72 g~~pTP~~~~av~~~~~~~GImITASHNP~~~NGiK~~~~~G~~~~~~~~~~I~~~~~~~~-~~~~~~~--~~--g~~~~ 146 (455)
T 2f7l_A 72 GMAPTPALQYAVKTLGYDGGVVITASHNPAPYNGIKVVDKDGIEIRREKENEIEDLFFTER-FNTIEWS--SL--TTEVK 146 (455)
T ss_dssp EECCHHHHHHHHHHHCCSEEEEECCTTSCTTEEEEEEECTTSSBCCHHHHHHHHHHHHHTC-CCCCCGG--GC--CCCCE
T ss_pred CCCCcHHHHHHHHhcCCCeEEEEEcCCCChHHCEEEEECCCCCCCCHHHHHHHHHHHhcCC-CCcCchh--cC--Cceee
Confidence 9999999999999999999999999999999999999999999998776666666654321 0001111 11 3 332
Q ss_pred CCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCc
Q psy1654 192 CPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEP 271 (459)
Q Consensus 192 ~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~ 271 (459)
. ..++.+.|++++++.++ .+.++.+++|||+||+||+++.+++++|++|||++ +. +++.|||.||++ .|+|+.
T Consensus 147 ~-~~~~~~~Y~~~l~~~~~-~~~i~~~~lkivvd~~~G~~~~~~~~~l~~lG~~v-~~--~~~~pDg~F~~~-~p~p~~- 219 (455)
T 2f7l_A 147 R-EDRVISTYVNGILSHVD-IEKIKKKNYKVLIDPANSVGALSTPLVARALGCKI-YT--INGNLDPLFSAR-QPEPTF- 219 (455)
T ss_dssp E-CCCHHHHHHHHHHTTSC-HHHHHHHCCEEEEECTTTGGGGTHHHHHHHTTCEE-EE--BSCSCCTTCTTS-CSSCCT-
T ss_pred c-ccchHHHHHHHHHhhcC-hhhcccCCCEEEEECCCchHHHHHHHHHHHcCCEE-EE--ECCcCCCCCCCC-CcCcch-
Confidence 1 35789999999999876 33345578999999999999999999999999974 33 599999999985 599996
Q ss_pred hhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccch
Q psy1654 272 SSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSS 351 (459)
Q Consensus 272 ~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss 351 (459)
++++.+.+.|++.++|+|+++||||||++++| ++| ++++||++++|+++++++..+. + +..||.|++||
T Consensus 220 ~~l~~l~~~v~~~~adlgia~DgDaDR~~~vd--~~g--~~l~gd~i~~lla~~l~~~~~~--~-----~~~vv~tv~ss 288 (455)
T 2f7l_A 220 DSLKETAEVVKTLKVDLGVAHDGDADRAIFID--SEG--RVQWGDRSGTLLSYWASVKNPK--A-----IKKIVTAVSSS 288 (455)
T ss_dssp TTSHHHHHHHHHTTCSEEEECCTTSCCCEEEE--TTS--CBCCHHHHHHHHHHHHHHTCTT--S-----CSEEEEETTSC
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCeEEEEc--CCC--eEEChHHHHHHHHHHHHHhCcc--C-----CCeEEEEeccc
Confidence 68999999999999999999999999999998 478 7799999999999999875211 1 23699999999
Q ss_pred HHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCCCH
Q psy1654 352 KILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDL 431 (459)
Q Consensus 352 ~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~L 431 (459)
.+++++++++|+++++|+|||+|++++|.+. +++||||+|||++|+++.+++|||+++++++|+++. +|++|
T Consensus 289 ~~l~~~a~~~g~~~~~t~~G~k~i~~~m~~~-----~~~~ggE~Sgg~~~~~~~~~~Dgi~a~l~~le~~a~---~g~~L 360 (455)
T 2f7l_A 289 SLVEEYLSKYNIQVDWTKVGSVDIAHKVADE-----NALAGFEENGGFMYPPHQYVRDGAMSFALMLELLAN---ENVSS 360 (455)
T ss_dssp THHHHHHHTTTCEEEEECSCHHHHHHHHHHT-----TCSEEEETTEEEEBTTTBSSCCHHHHHHHHHHHHHH---HTCCH
T ss_pred HHHHHHHHHcCCEEEEEcCcHHHHHHHHHhc-----CcEEEEcCcCcEEECCcCCCCCHHHHHHHHHHHHHh---hCCCH
Confidence 9999999999999999999999999998763 678999999999999999999999999999999984 89999
Q ss_pred HHHHHHHHHhcccccCcccCCCCc
Q psy1654 432 HQLLADVYDKGNCITGGFIDPKSK 455 (459)
Q Consensus 432 s~ll~~lp~~y~~~~~~~~~~~~~ 455 (459)
+|+++++|. |......+.|||..
T Consensus 361 ~ell~~~~~-~~~~~~~v~~~~~~ 383 (455)
T 2f7l_A 361 AELFDRLPK-YYLVKTKVDLKPGL 383 (455)
T ss_dssp HHHHHTSCC-CEEEEEEEECCTTC
T ss_pred HHHHHhCCC-CeeeeEeEEcCcHH
Confidence 999998886 55567788999864
No 3
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=100.00 E-value=4e-76 Score=612.61 Aligned_cols=377 Identities=19% Similarity=0.219 Sum_probs=320.0
Q ss_pred CcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 32 RLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 32 ~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
+.+|||+||||++|+ +|||+++.++|+|||+++.+.. .+++|+||||+|.+|++|++++++||+++|+ +|+++
T Consensus 23 ~~~FGt~GiRG~~~~---~lt~~~v~~~g~a~~~~l~~~~---~~~~VvIG~D~R~ss~~~~~a~a~gl~s~Gi-~V~~~ 95 (469)
T 3pdk_A 23 GKYFGTDGVRGVANK---ELTPELAFKIGRFGGYVLTKDT---DRPKVIIGRDTRISGHMLEGALVAGLLSTGA-EVMRL 95 (469)
T ss_dssp CCSCBTTBEEEEBTT---TBCHHHHHHHHHHHHHHHHTTC---SSCEEEEEECSCTTHHHHHHHHHHHHHTTTC-EEEEE
T ss_pred ccccCCCCeeeecCC---CCCHHHHHHHHHHHHHHHHhhC---CCCeEEEEeCCCCCHHHHHHHHHHHHHHCCC-EEEEe
Confidence 468999999999998 7999999999999999997632 1568999999999999999999999999999 99999
Q ss_pred CCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhcc-CCCC
Q psy1654 112 SRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIR-DQIQ 190 (459)
Q Consensus 112 ~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~-~~~~ 190 (459)
|.+|||+++|+++++++++||||||||||++||||||++++|.+++++.+++|++.+++.. +++.+.... .|.+
T Consensus 96 -g~~pTP~l~fav~~~~a~~GImITASHNP~~~NGiK~~~~~G~~i~~~~~~~Ie~~~~~~~----~~~~~~~~~~~g~~ 170 (469)
T 3pdk_A 96 -GVISTPGVAYLTKALDAQAGVMISASHNPVQDNGIKFFGSDGFKLTDEQEAEIEALLDKEV----DELPRPTGTNLGQV 170 (469)
T ss_dssp -EECCHHHHHHHHHHHTCSEEEEECCTTSCTTEEEEEEEETTSSBCCHHHHHHHHHHHHSSS----CCSCCCCGGGSCCE
T ss_pred -CCCChHHHHHHHHhcCCCeEEEEEeCCCcchhCcEEEecCCCcCCCHHHHHHHHHHHhccc----cccCccccccCccE
Confidence 9999999999999999999999999999999999999999999998765566666554321 111111111 1333
Q ss_pred CCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC
Q psy1654 191 PCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE 270 (459)
Q Consensus 191 ~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~ 270 (459)
.. ..++.+.|++++++.++. +.+++||||||+||+++.+++++|++|||++ +. +++.|||.||+ +.|.|..
T Consensus 171 ~~-~~d~~~~Y~~~l~~~~~~----~~~~lkivvD~~nG~~~~~~~~ll~~lG~~v-~~--l~~~pDg~f~n-~~~~~~~ 241 (469)
T 3pdk_A 171 SD-YFEGGQKYLQYIKQTVEE----DFSGLHIALDCAHGATSSLAPYLFADLEADI-ST--MGTSPNGMNIN-DGVGSTH 241 (469)
T ss_dssp EE-CTHHHHHHHHHHHTTCSS----CCTTCEEEEECTTSTTTTHHHHHHHHTTCEE-EE--ESCCCCSSCTT-SSCSTTS
T ss_pred EE-cccHHHHHHHHHHHhcCc----ccCCCEEEEECCCchHHHHHHHHHHHcCCEE-EE--ECCCcCCCCCC-CCCCCCC
Confidence 21 257899999999998872 4578999999999999999999999999984 33 49999999987 4456544
Q ss_pred chhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccc
Q psy1654 271 PSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVS 350 (459)
Q Consensus 271 ~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~s 350 (459)
++.+.+.|++.++|+|+++||||||++++| ++| ++++||++++|+++++++..+ .+ +..||.|++|
T Consensus 242 ---~~~l~~~v~~~~adlgia~DgDaDR~~~vd--~~G--~~l~gd~i~~Lla~~l~~~~~--l~-----~~~vv~tv~s 307 (469)
T 3pdk_A 242 ---PEVLAELVKEKGADIGLAFDGDGDRLIAVD--EKG--NIVDGDQIMFICAKYMKETGQ--LK-----HNTVVSTVMS 307 (469)
T ss_dssp ---THHHHHHHHHHTCSEEEEECTTSSBEEEEE--TTS--CEECHHHHHHHHHHHHHHTTC--SG-----GGEEEEETTS
T ss_pred ---HHHHHHHHHhcCCcEEEEECCCCCeEEEEC--CCC--cEEChhHHHHHHHHHHHHhCC--CC-----CCeEEEeecC
Confidence 456678899999999999999999999998 489 779999999999999887521 11 2358999999
Q ss_pred hHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCCC
Q psy1654 351 SKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKD 430 (459)
Q Consensus 351 s~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~ 430 (459)
|.+++++++++|+++++|||||+||+++|.+. +++||||+|||++|+++.+++|||+++++++++++. +|++
T Consensus 308 s~~l~~~~~~~G~~~~~t~tG~k~i~~~m~~~-----~~~~ggE~SG~~~~~~~~~~~Dgi~aal~~le~l~~---~g~~ 379 (469)
T 3pdk_A 308 NLGFYKALEANGITSDKTAVGDRYVMEEMKRG-----GYNLGGEQSGHIILLDYITTGDGMLSALQLVNIMKM---TKKP 379 (469)
T ss_dssp CHHHHHHHHHTTCEEEEECSSHHHHHHHHHHH-----TCCEEECTTSBEEETTTCSSCCHHHHHHHHHHHHHH---HTCC
T ss_pred cHHHHHHHHHcCCEEEEEcCchHHHHHHHhhc-----CCeEEEcccCCEecCCCCCCCCHHHHHHHHHHHHHH---cCCC
Confidence 99999999999999999999999999998764 578999999999999999999999999999999874 8999
Q ss_pred HHHHHHHHHHhcccccCcccCCCC
Q psy1654 431 LHQLLADVYDKGNCITGGFIDPKS 454 (459)
Q Consensus 431 Ls~ll~~lp~~y~~~~~~~~~~~~ 454 (459)
|+++++++|. |... .+.+||.
T Consensus 380 Lsel~~~l~~-~~~~--~~~v~~~ 400 (469)
T 3pdk_A 380 LSELAGEMTK-FPQL--LVNVRVT 400 (469)
T ss_dssp HHHHHTTSCC-CCEE--EEEECCS
T ss_pred HHHHHHHHhh-cCce--EEEEecC
Confidence 9999999986 6543 4555664
No 4
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.1e-76 Score=616.76 Aligned_cols=380 Identities=23% Similarity=0.341 Sum_probs=328.6
Q ss_pred cccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcC
Q psy1654 33 LKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVS 112 (459)
Q Consensus 33 ~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~ 112 (459)
.+|||+||||++|+ +|||+++.++|+|||+++.+... ++++|+||||+|.+|++|++++++||+++|+ +|+++
T Consensus 3 ~~Fgt~GiRG~~~~---~lt~~~v~~~~~a~~~~l~~~~~--~~~~VvIG~D~R~ss~~l~~a~~~gl~~~G~-~V~~~- 75 (455)
T 1wqa_A 3 KLFGTFGVRGIANE---KITPEFAMKIGMAFGTLLKREGR--KKPLVVVGRDTRVSGEMLKEALISGLLSVGC-DVIDV- 75 (455)
T ss_dssp TTCBTTBEEEEBTT---TBCHHHHHHHHHHHHHHHHHTTC--SSCEEEEEECSCTTHHHHHHHHHHHHHHTTC-EEEEE-
T ss_pred cccCCCceeeecCC---CcCHHHHHHHHHHHHHHHHhcCC--CCCeEEEEeCCCcCHHHHHHHHHHHHHHcCC-eEEEe-
Confidence 47999999999998 79999999999999999976421 1356999999999999999999999999999 99999
Q ss_pred CCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccCCCCCC
Q psy1654 113 RVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQIQPC 192 (459)
Q Consensus 113 g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~~~~~~ 192 (459)
|.+|||+++|+++++++++||||||||||++||||||++++|.+++++.+++|++.+++. ......+. .. +.+.
T Consensus 76 g~~pTP~l~~~v~~~~~~~GimITASHNP~~~NGiK~~~~~G~~~~~~~~~~Ie~~~~~~-~~~~~~~~--~~--g~~~- 149 (455)
T 1wqa_A 76 GIAPTPAVQWATKHFNADGGAVITASHNPPEYNGIKLLEPNGMGLKKEREAIVEELFFKE-DFDRAKWY--EI--GEVR- 149 (455)
T ss_dssp EECCHHHHHHHHHHTTCSEEEEECCTTSCTTEEEEEEECTTSSBCCHHHHHHHHHHHHHT-CCCCCCGG--GC--CCEE-
T ss_pred CCCChHHHHHHHHhcCCCEEEEEEeCCCChHHCeEEEEcCCCCcCCHHHHHHHHHHHhcC-CcccCCcc--CC--ccee-
Confidence 999999999999999999999999999999999999999999999877666666665432 11011111 11 3331
Q ss_pred CcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCch
Q psy1654 193 PLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPS 272 (459)
Q Consensus 193 ~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~ 272 (459)
..++.+.|++++++.++ .+.++.+++|||+||+||+++.+++++|++|||++ +. +|+.|||.||+ +.|+|.. +
T Consensus 150 -~~~~~~~Y~~~l~~~~~-~~~~~~~~lkivvd~~nG~~~~~~~~~l~~lG~~v-~~--~~~~pdg~f~~-~~~~p~~-~ 222 (455)
T 1wqa_A 150 -REDIIKPYIEAIKSKVD-VEAIKKRKPFVVVDTSNGAGSLTLPYLLRELGCKV-IT--VNAQPDGYFPA-RNPEPNE-E 222 (455)
T ss_dssp -ECCCHHHHHHHHHTTSC-HHHHHHHCCEEEEECTTSGGGGTHHHHHHHHTCEE-EE--ESCSCCTTCSS-SCSCCCT-T
T ss_pred -ccchHHHHHHHHHhhCC-hhhcccCCCEEEEECCCccHHHHHHHHHHHcCCEE-EE--ECCcCCCCCCC-CCCCCch-h
Confidence 35788999999999876 23345578999999999999999999999999974 33 49999999996 3577764 6
Q ss_pred hHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccchH
Q psy1654 273 SLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSK 352 (459)
Q Consensus 273 ~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss~ 352 (459)
+++.+.+.+++.++|+|+++||||||++++| ++| ++++||++++|+++++++..+ +..||.|++||.
T Consensus 223 ~l~~l~~~v~~~~adlgia~DgDaDR~~~vd--~~G--~~l~gd~i~~lla~~l~~~~~---------~~~vv~tv~ss~ 289 (455)
T 1wqa_A 223 NLKEFMEIVKALGADFGVAQDGDADRAVFID--ENG--RFIQGDKTFALVADAVLKEKG---------GGLLVTTVATSN 289 (455)
T ss_dssp TTHHHHHHHHHHTCSEEEEECTTSCCEEEEE--TTS--CBCCHHHHHHHHHHHHHHHHT---------SCEEEEETTSCT
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCeEEEEe--CCC--CEEChhHHHHHHHHHHHHhCC---------CCeEEEeecCcH
Confidence 7889999999999999999999999999998 489 679999999999999987622 125999999999
Q ss_pred HHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCCCHH
Q psy1654 353 ILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLH 432 (459)
Q Consensus 353 ~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~Ls 432 (459)
+++++++++|+++++|+|||+|++++|++. +++||||+|||++|+++.+++|||+++++++|+++. +|++|+
T Consensus 290 ~l~~~a~~~g~~~~~t~tG~k~i~~~m~~~-----~~~~ggE~sgg~~~~~~~~~~Dgi~a~l~~le~l~~---~g~~L~ 361 (455)
T 1wqa_A 290 LLDDIAKKHGAKVMRTKVGDLIVARALYEN-----NGTIGGEENGGVIFPEHVLGRDGAMTVAKVVEIFAK---SGKKFS 361 (455)
T ss_dssp HHHHHHHHTTCEEEEECSSTTHHHHHHHHT-----TCSEEEETTEEEECTTTCSSCCHHHHHHHHHHHHHH---HCSCHH
T ss_pred HHHHHHHHCCCEEEEEcCcHHHHHHHHHhC-----CceEEEcCcCcEEECCcCcCccHHHHHHHHHHHHHh---cCCCHH
Confidence 999999999999999999999999998763 678999999999999999999999999999999984 899999
Q ss_pred HHHHHHHHhcccccCcccCCCC
Q psy1654 433 QLLADVYDKGNCITGGFIDPKS 454 (459)
Q Consensus 433 ~ll~~lp~~y~~~~~~~~~~~~ 454 (459)
++++++|. |......+.|||.
T Consensus 362 ~~~~~l~~-~~~~~~~v~~~~~ 382 (455)
T 1wqa_A 362 ELIDELPK-YYQIKTKRHVEGD 382 (455)
T ss_dssp HHHHTSCC-CEEEEECCBCCSS
T ss_pred HHHHhccc-ccEeeEeeEcCcH
Confidence 99999997 6667788899985
No 5
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=100.00 E-value=6.3e-76 Score=612.50 Aligned_cols=376 Identities=22% Similarity=0.257 Sum_probs=322.9
Q ss_pred hhcCCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcE
Q psy1654 28 LFLKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKR 107 (459)
Q Consensus 28 ~~~~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~ 107 (459)
.|+++.+|||+||||++|+ +|||+++.++|+|||+++.++. +++|+||||+|.+|++|++++++||+++|+ +
T Consensus 21 ~~~~~~~Fgt~GiRG~~~~---~lt~~~~~~ig~A~~~~l~~~~----~~~VvVG~D~R~ss~~~~~a~a~gl~a~Gi-~ 92 (485)
T 3uw2_A 21 SMISQSIFKAYDIRGVIGK---TLDADVARSIGRAFGSEVRAQG----GDAVVVARDGRLSGPELVGALADGLRAAGV-D 92 (485)
T ss_dssp -CCCGGGBCSSSEEEEBTT---TBCHHHHHHHHHHHHHHHHHTT----CCEEEEEECSCTTHHHHHHHHHHHHHHTTC-E
T ss_pred ccccccccccCCEEEEeCC---CCCHHHHHHHHHHHHHHHHHcC----CCEEEEEECCCcCHHHHHHHHHHHHHHCCC-E
Confidence 3577899999999999998 8999999999999999997642 468999999999999999999999999999 9
Q ss_pred EEEcCCCccchhHHHHHH--------HhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccc
Q psy1654 108 VFLVSRVCPTPIIAYSIR--------ALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHI 179 (459)
Q Consensus 108 V~~~~g~~ptP~~~~av~--------~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~ 179 (459)
|+++ |.+|||+++|+++ ++++++||||||||||++||||||+. +|.+++++..++|++.+++. .
T Consensus 93 V~~~-g~~pTP~l~~av~~~~~~~~~~~~~~~GImITASHNP~~~NGiK~~~-~G~~i~~~~~~~I~~~~~~~------~ 164 (485)
T 3uw2_A 93 VVDV-GMVPTPVGYFAASVPLALSGGERRVDSCIVVTGSHNPPDYNGFKMVL-RGAAIYGDQIQGLYKRIVDA------R 164 (485)
T ss_dssp EEEE-EECCHHHHHHHTTSCEEETTEEECCCCEEEECCTTSCTTEEEEEEEE-TTEECCTHHHHHHHHHHHTT------C
T ss_pred EEEe-CCCChHHHHHHHhccccccccccCCCeEEEEEeCCCCcccceEEEec-CCCCCCHHHHHHHHHHHhcC------C
Confidence 9999 9999999999999 88999999999999999999999997 79998876544555444321 2
Q ss_pred cchhhccCCCCCCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCC
Q psy1654 180 WNIDRIRDQIQPCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPE 259 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~ 259 (459)
+.+. . +.+. ..++.+.|++++.+.++. .+++|||+||+||+++.+++++|++|||++ + .+++.|||.
T Consensus 165 ~~~~-~--g~~~--~~d~~~~Yi~~l~~~i~~-----~~~lkIvvD~~~Ga~~~~~~~il~~lG~~v-~--~~~~~pDg~ 231 (485)
T 3uw2_A 165 FETG-S--GSYE--QYDVADQYVERIVGDIKL-----TRPLKLVVDAGNGVAGPLATRLFKALGCEL-V--ELFTDIDGN 231 (485)
T ss_dssp CCCC-C--CCEE--ECCCHHHHHHHHHTTCCC-----SSCCCEEEECTTSTHHHHHHHHHHHTTCCE-E--EESCSCCTT
T ss_pred cccC-C--ceEE--ecchHHHHHHHHHHhcCc-----ccCCEEEEEcCCCcHHHHHHHHHHHcCCeE-E--EecCccCCC
Confidence 2221 1 3222 246789999999998772 358999999999999999999999999984 3 359999999
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCC
Q psy1654 260 FPTVRFPNPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPL 339 (459)
Q Consensus 260 f~~~~~p~p~~~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~ 339 (459)
||+ +.|+|+.+++++.+.+.|++.++|+|+++||||||++++| ++| ++++||++++|+++++++. +|+
T Consensus 232 Fp~-~~p~P~~~~~l~~l~~~v~~~~aDlgia~DgDaDR~~vvd--~~G--~~i~gd~~~alla~~ll~~----~~~--- 299 (485)
T 3uw2_A 232 FPN-HHPDPAHPENLQDVIAKLKATDAEIGFAFDGDGDRLGVVT--KDG--QIIYPDRQLMLFAEEVLSR----NPG--- 299 (485)
T ss_dssp CCS-SCSCTTSGGGGHHHHHHHHHSSCCEEEEECTTSSCEEEEC--TTS--CBCCHHHHHHHHHHHHHHH----STT---
T ss_pred CCC-CCcCCCCHHHHHHHHHHHHhhCCCEEEEECCCCCeEEEEe--CCC--ceECHHHHHHHHHHHHHHh----CCC---
Confidence 999 4799998899999999999999999999999999999998 489 6799999999999999875 232
Q ss_pred CCceEEEeccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCC-cccCcHHHHHHHHH
Q psy1654 340 QDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTH-VLDKDGVTAAVRMA 418 (459)
Q Consensus 340 ~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~-~~~~Dgi~a~l~il 418 (459)
..||.|+.||..++++++++|+++++|||||+||+++|.+. +++||||+|||++|+++ ..++|||+++++++
T Consensus 300 --~~vv~~v~ss~~l~~~~~~~g~~~~~t~vG~k~i~~~m~~~-----~~~~ggE~SG~~~f~~~~~~~~Dgi~aal~ll 372 (485)
T 3uw2_A 300 --AQIIYDVKCTRNLARWVREKGGEPLMWKTGHSLVKAKLRET-----GAPLAGEMSGHVFFKDRWYGFDDGLYTGARLL 372 (485)
T ss_dssp --CEEEEETTSCTHHHHHHHHTTCEEEEECSSHHHHHHHHHHH-----CCSEEECTTSCEEETTTTCSSBCHHHHHHHHH
T ss_pred --CeEEEEeCCcHHHHHHHHHcCCEEEEEcCChHHHHHHHHhh-----cccceecccCcEeeccccCCCCcHHHHHHHHH
Confidence 25899999999999999999999999999999999999774 57899999999999875 45799999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHhcccccCcccCCCCc
Q psy1654 419 ELVAYLDSQGKDLHQLLADVYDKGNCITGGFIDPKSK 455 (459)
Q Consensus 419 e~la~~~~~~~~Ls~ll~~lp~~y~~~~~~~~~~~~~ 455 (459)
|+++. ++ +|++++++||+.|......+.|||..
T Consensus 373 e~la~---~~-~lsel~~~lp~~~~~~~~~v~~~~~~ 405 (485)
T 3uw2_A 373 EILAR---VA-DPSALLNGLPNAVSTPELQLKLEEGE 405 (485)
T ss_dssp HHHTT---SS-CHHHHHHTSCCCEECCCEEC------
T ss_pred HHHHh---cC-CHHHHHHHhhHhhCCceEEEeCCchh
Confidence 99984 67 99999999999777656789999964
No 6
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=100.00 E-value=7.1e-76 Score=612.05 Aligned_cols=375 Identities=22% Similarity=0.268 Sum_probs=330.6
Q ss_pred cCCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEE
Q psy1654 30 LKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVF 109 (459)
Q Consensus 30 ~~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~ 109 (459)
+++.+|||+||||+++. ++||+++.++|+|||+++.++. +++|+||||+|.+|++|++++++||+++|+ +|+
T Consensus 9 ~~~~~Fgt~GiRG~~~~---~~t~~~~~~i~~a~~~~l~~~~----~~~VvVG~D~R~ss~~l~~a~~~gl~a~G~-~V~ 80 (463)
T 1p5d_X 9 LPASIFRAYDIRGVVGD---TLTAETAYWIGRAIGSESLARG----EPCVAVGRDGRLSGPELVKQLIQGLVDCGC-QVS 80 (463)
T ss_dssp CCGGGBCSSSEEEEBTT---TBCHHHHHHHHHHHHHHHHHTT----CCEEEEEECSCTTHHHHHHHHHHHHHTBTC-EEE
T ss_pred ccccccCCCCcceeCCC---CCCHHHHHHHHHHHHHHHHHcC----CCeEEEEECCCCCHHHHHHHHHHHHHHCCC-EEE
Confidence 45789999999999998 7999999999999999998642 468999999999999999999999999999 999
Q ss_pred EcCCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccCCC
Q psy1654 110 LVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQI 189 (459)
Q Consensus 110 ~~~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~~~ 189 (459)
++ |.+|||+++|+++++++++||||||||||++||||||++ +|.+++++..++|++.+++. +|... . +.
T Consensus 81 ~~-g~~pTP~l~~av~~~~~~~GImITASHNP~~~NGiK~~~-~G~~i~~~~~~~I~~~~~~~------~~~~~-~--g~ 149 (463)
T 1p5d_X 81 DV-GMVPTPVLYYAANVLEGKSGVMLTGSHNPPDYNGFKIVV-AGETLANEQIQALRERIEKN------DLASG-V--GS 149 (463)
T ss_dssp EE-EECCHHHHHHHHHHSSCSEEEEECCTTSCTTEEEEEEEE-TTEECCTHHHHHHHHHHHHT------CCCCB-C--CE
T ss_pred Ee-CCCChHHHHHHHHhcCCCeEEEEccCCCCcccceEEEEC-CCccCCHHHHHHHHHHHhcC------CcccC-C--Cc
Confidence 99 999999999999999999999999999999999999999 99999987666666655431 12211 1 32
Q ss_pred CCCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCC
Q psy1654 190 QPCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPE 269 (459)
Q Consensus 190 ~~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~ 269 (459)
+. ..++.+.|++++++.++. .+++||||||+||+++.+++++|++|||++ + .+|++|||.||+ +.|+|+
T Consensus 150 ~~--~~d~~~~Y~~~l~~~~~~-----~~~lkivvD~~nG~~~~~~~~ll~~lG~~v-~--~~~~~pDg~f~~-~~p~p~ 218 (463)
T 1p5d_X 150 VE--QVDILPRYFKQIRDDIAM-----AKPMKVVVDCGNGVAGVIAPQLIEALGCSV-I--PLYCEVDGNFPN-HHPDPG 218 (463)
T ss_dssp EE--ECCCHHHHHHHHHTTCCC-----SSCEEEEEECTTSGGGGTHHHHHHHHHEEE-E--EESCSCCTTCCS-SCSCTT
T ss_pred ee--cCChHHHHHHHHHhhhcc-----cCCCEEEEECCCCcHHHHHHHHHHHcCCeE-E--EEeCccCCCCCC-CCcCCC
Confidence 22 247789999999998762 168999999999999999999999999974 3 459999999999 679999
Q ss_pred CchhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEecc
Q psy1654 270 EPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTV 349 (459)
Q Consensus 270 ~~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ 349 (459)
.+++++.+.+.|++.++|+|+++||||||++++|+ +| ++++||++++|+++++++. .|+ ..||.|+.
T Consensus 219 ~~~~l~~l~~~v~~~~adlgia~DgDaDR~~~vd~--~G--~~l~gd~i~~L~a~~l~~~----~~~-----~~vv~~v~ 285 (463)
T 1p5d_X 219 KPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTN--TG--TIIYPDRLLMLFAKDVVSR----NPG-----ADIIFDVK 285 (463)
T ss_dssp SGGGGHHHHHHHHHTTCSEEEEECTTSSBEEEEET--TC--CEECHHHHHHHHHHHHHHH----STT-----CEEEEETT
T ss_pred CHHHHHHHHHHHHHhCCCEEEEECCCCCeEEEEeC--CC--cEeCHHHHHHHHHHHHHHh----CCC-----CeEEEEec
Confidence 88899999999999999999999999999999994 89 7899999999999999875 222 25899999
Q ss_pred chHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCC-CcccCcHHHHHHHHHHHHHHHHhCC
Q psy1654 350 SSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGT-HVLDKDGVTAAVRMAELVAYLDSQG 428 (459)
Q Consensus 350 ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~-~~~~~Dgi~a~l~ile~la~~~~~~ 428 (459)
||..++++++++|+++++|||||||+.++|++. ++.+|||+|||++|++ +..++||++++++++|++++ +|
T Consensus 286 ss~~l~~~~~~~g~~~~~t~tG~k~i~~~m~~~-----~~~~ggE~sG~~~~~~~~~~~~Dgi~aal~~le~~a~---~g 357 (463)
T 1p5d_X 286 CTRRLIALISGYGGRPVMWKTGHSLIKKKMKET-----GALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQ---DQ 357 (463)
T ss_dssp SCTHHHHHHHHTTCEEEEECSSHHHHHHHHHHH-----CCSEEECTTSBEEETTTTCSSBCHHHHHHHHHHHHHT---CS
T ss_pred CcHHHHHHHHHcCCEEEEeCCcHHHHHHHHHhc-----CCceeecCCCcEEeccccCCCCcHHHHHHHHHHHHHH---hC
Confidence 999999999999999999999999999998764 5789999999988887 55678999999999999984 89
Q ss_pred CCHHHHHHHHHHhcccccCcccCCCCc
Q psy1654 429 KDLHQLLADVYDKGNCITGGFIDPKSK 455 (459)
Q Consensus 429 ~~Ls~ll~~lp~~y~~~~~~~~~~~~~ 455 (459)
++|++++++||.+|...+..+.|||..
T Consensus 358 ~~Ls~ll~~l~~~~~~~~~~v~~~~~~ 384 (463)
T 1p5d_X 358 RDSEHVFSAFPSDISTPEINITVTEDS 384 (463)
T ss_dssp SCHHHHHHTSCCCEECCCEEEECCTTT
T ss_pred CCHHHHHHHhhHhhCceeEEEEcCchh
Confidence 999999999999887667788999864
No 7
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=100.00 E-value=1.7e-75 Score=604.56 Aligned_cols=373 Identities=17% Similarity=0.199 Sum_probs=317.0
Q ss_pred cccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCC-eEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 33 LKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKES-GIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 33 ~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~-~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
.+|||+||||++|++ +|||+++.++|+|||+++.++. .+ +|+||||+|.+|++|++++++||+++|+ +|+++
T Consensus 3 ~~FGt~GiRG~~~~g--~lt~~~v~~~g~a~~~~l~~~~----~~~~VvVG~D~R~ss~~l~~a~~~gl~s~G~-~V~~~ 75 (443)
T 3i3w_A 3 KYFGTDGIRGEVANS--TITVEFTQKLGNAVGSLINQKN----YPKFVIVGQDTRSSGGFLKFALVSGLNAAGI-DVLDL 75 (443)
T ss_dssp CCCCSSSSEEEBSSS--SBSHHHHHHHHHHHHHHHHHTT----CCSEEEEEECSCTTHHHHHHHHHHHHHHHTC-EEEEE
T ss_pred cccCCCCeeEEeCCC--CCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEeCCCcCHHHHHHHHHHHHHHCCC-eEEEe
Confidence 589999999999975 7999999999999999997642 24 8999999999999999999999999999 99999
Q ss_pred CCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchhhccC-CCC
Q psy1654 112 SRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRD-QIQ 190 (459)
Q Consensus 112 ~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~~~~~-~~~ 190 (459)
|.+|||+++|+++++++++||||||||||++||||||++++|.+++++..++|++.+++. +....... |.+
T Consensus 76 -g~~pTP~~~~av~~~~a~~GImITASHNP~~~NGiK~~~~~G~~l~~~~~~~Ie~~~~~~-------~~~~~~~~~g~~ 147 (443)
T 3i3w_A 76 -GVVPTPVVAFMTVKHRAAAGFVITASHNKFTDNGIKLFSSNGFKLDDALEEEVEDMIDGD-------FIYQPQFKFGSY 147 (443)
T ss_dssp -EECCHHHHHHHHHHTTCSEEEEECCTTSCTTEEEEEEEETTSCBCCHHHHHHHHHHHTSC-------CCCCTTSCCCCE
T ss_pred -CCCCHHHHHHHHHhcCCCeEEEEEECCCCchhCeEEEEcCCCCcCCHHHHHHHHHHHhcc-------ccccccccCccE
Confidence 999999999999999999999999999999999999999999998765444444443221 11111111 332
Q ss_pred CCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC
Q psy1654 191 PCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE 270 (459)
Q Consensus 191 ~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~ 270 (459)
.. ..++.+.|++++++.++. .++.++ ||||||+||+++.+++++|++|||++ +. +|++|||.||+ +.|+|..
T Consensus 148 ~~-~~d~~~~Y~~~l~~~~~~--~i~~~~-kivvD~~nG~~~~~~~~ll~~lG~~v-~~--~~~~pDg~f~n-~~~~~~~ 219 (443)
T 3i3w_A 148 KI-LANAIDEYIESIYSRFAK--FVNYKG-KVVVDCAHGAASHNFEALLDKFGINY-VS--IASNPDGLNIN-VGCGATC 219 (443)
T ss_dssp EE-CTTTTHHHHHHHHHHHTT--TCCCCS-EEEEECTTSTTTTHHHHHHHHTTCEE-EE--SSCCCCSSCTT-TTCSTTC
T ss_pred EE-ChhHHHHHHHHHHHhCch--hhccCC-eEEEECCCChHHHHHHHHHHHcCCEE-EE--ECCccCCCCCC-CCCCCCC
Confidence 21 246789999999998872 245567 99999999999999999999999984 33 59999999998 4566654
Q ss_pred chhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccc
Q psy1654 271 PSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVS 350 (459)
Q Consensus 271 ~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~s 350 (459)
++.+++.|++.++|+|+++||||||++++| ++| ++++||++++|+++++++. ++. ..||.|++|
T Consensus 220 ---~~~l~~~v~~~~adlgia~DgDaDR~~~vd--~~G--~~l~gd~i~~lla~~l~~~----~~~-----~~vv~tv~s 283 (443)
T 3i3w_A 220 ---VSNIKKAVKEQKADLGISLDGDADRIIIVD--ENG--QEIDGDGILNILAQYSDIC----GGT-----NGIVGTQMT 283 (443)
T ss_dssp ---HHHHHHHHHHHTCSEEEEECTTSCBEEEEC--TTS--CEECHHHHHHHHHHTTTTT----TCC-----SCEEEETTS
T ss_pred ---HHHHHHHHHhcCCcEEEEECCCCceEEEEC--CCC--cEeChhHHHHHHHHHHHHh----CCC-----CeEEEeecC
Confidence 566778899999999999999999999998 589 7899999999999987653 222 248999999
Q ss_pred hHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCCC
Q psy1654 351 SKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKD 430 (459)
Q Consensus 351 s~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~ 430 (459)
|..++++++++|+++++|||||+|++++|.+. +++||||+|||++|+++.+++|||+++++++++++ .++++
T Consensus 284 s~~l~~~~~~~G~~~~~t~~G~k~i~~~m~~~-----~~~~ggE~SG~~~~~~~~~~~Dgi~a~l~~le~l~---~~g~~ 355 (443)
T 3i3w_A 284 NMSYENHYRANKIPFIRSKVGDRYVLEDLVKY-----GYKIGGESSGHVINLNFGTTGDGLFTAIQLLAIFS---QADKP 355 (443)
T ss_dssp CHHHHHHHHHTTCCEEEESSSTTHHHHHHHHH-----TCCEEECTTSBEEETTTCSSCCHHHHHHHHHHHTT---TCSSC
T ss_pred chHHHHHHHHCCCeEEEEeChHHHHHHHHhhc-----CcEEEEEeeCcEEEcCcCcCCCHHHHHHHHHHHHH---HcCCC
Confidence 99999999999999999999999999998764 57899999999999999999999999999999987 58999
Q ss_pred HHHHHHHHHHhcccccCcccCCC
Q psy1654 431 LHQLLADVYDKGNCITGGFIDPK 453 (459)
Q Consensus 431 Ls~ll~~lp~~y~~~~~~~~~~~ 453 (459)
|+++++++|. |......+.||.
T Consensus 356 Lsel~~~~~~-~p~~~~~v~~~~ 377 (443)
T 3i3w_A 356 VSEFKLQGEL-MQQTLINVPLTK 377 (443)
T ss_dssp GGGTSCSSCC-CEEEEEEEECSS
T ss_pred HHHHHHhhhh-hcceEEEEEcCc
Confidence 9999999997 655566777753
No 8
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A {Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Probab=100.00 E-value=1.3e-73 Score=605.89 Aligned_cols=402 Identities=21% Similarity=0.249 Sum_probs=324.0
Q ss_pred chhcCCHHHHHHhhcCCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHH
Q psy1654 16 DAFFKNKEAMSDLFLKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAEL 95 (459)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a 95 (459)
++||....+... .++|+.|||+||||+++. ++||++++.++|+|||+++.+++. +++|+||||+|.+|++++++
T Consensus 48 ~~~~~~~~~~~~-~~~r~~FGT~GiRG~~~~--~~ln~~~v~~i~~A~a~~l~~~~~---~~~VvVG~D~R~~S~~~~~~ 121 (570)
T 3na5_A 48 AQYYVLKPEAGN-AEHAVKFGTSGHRGSAGR--HSFNEPHILAIAQAIAEERAKNGI---TGPCYVGKDTHALSEPAFIS 121 (570)
T ss_dssp HHHHHCCCCTTC-GGGSCCCBTTBEEECGGG--TSSSHHHHHHHHHHHHHHHHHTTC---CSCEEEEECSSTTHHHHHHH
T ss_pred HHHhccCCCcCC-ccccceecCCCceeecCC--CCCCHHHHHHHHHHHHHHHHHhCC---CCeEEEEeCCCcccHHHHHH
Confidence 344444433322 344599999999999973 489999999999999999987532 35799999999999999999
Q ss_pred HHHHHHhCCCcEEEEcC--CCccchhHHHHHHHhc-----CCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHH
Q psy1654 96 TASVFLNGGVKRVFLVS--RVCPTPIIAYSIRALN-----LALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEE 168 (459)
Q Consensus 96 ~~~gL~~~G~~~V~~~~--g~~ptP~~~~av~~~~-----~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ 168 (459)
+++||+++|+ +|++++ |.+|||+++|++++++ +.+||||||||||++||||||++++|.+++.. ++++
T Consensus 122 a~~~L~a~Gi-~V~~~~d~g~~PTP~vsfav~~~~~~~~~~~~GImITASHNP~~~NGiK~~~~~G~~~~~~----i~~~ 196 (570)
T 3na5_A 122 VLEVLAANGV-DVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNGGPADTN----VTKV 196 (570)
T ss_dssp HHHHHHHTTC-CEEEEGGGCCCCHHHHHHHHHHHHHTCSSCCEEEEECCTTCCTTCEEEEEECTTSSCCCHH----HHHH
T ss_pred HHHHHHHCCC-EEEEeCCCCccChHHHHHHHHHhCCCccccceEEEEEeCCCChHHCcEEEecCCCCcCCHH----HHHH
Confidence 9999999999 999532 9999999999999998 89999999999999999999999999988654 4444
Q ss_pred HHhhcccc----ccccch---hh-ccCCCCCCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHH
Q psy1654 169 IMRNLEIE----DHIWNI---DR-IRDQIQPCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFK 240 (459)
Q Consensus 169 ie~~~~~~----~~~~~~---~~-~~~~~~~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~ 240 (459)
|++.+... ...+.+ .. ...+.+. ..++.+.|++.|.+.++ .+.++.+++|||+||+||+++.+++++|+
T Consensus 197 Ie~~~~~~~~~~~~~~~~~~~~~~~~~g~i~--~~d~~~~Yi~~l~~~i~-~~~i~~~~lkIvvD~~~Gag~~~~~~il~ 273 (570)
T 3na5_A 197 VEDRANALLAGGLQGVKRISLDAAMASGHVK--AVDLVQPFVEGLADIVD-MAAIQKAGLTLGVDPLGGSGIEYWKRIAE 273 (570)
T ss_dssp HHHHHHHHHHTTTTTCCCCCHHHHHHTTCEE--EECCHHHHHHHGGGTSC-HHHHHHHTCCEEEECTTCTTHHHHHHHHH
T ss_pred HHHHHHHhhhcccccccccchhhhccCCeee--ccchHHHHHHHHHhhcC-hhhhccCCCEEEEECCCCcHHHHHHHHHH
Confidence 54432110 011111 00 0113332 35789999999999887 34555678999999999999999999999
Q ss_pred HcCCCCeEEeccccccCCCCCCCCC-------CCCCCchhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEe
Q psy1654 241 LFKFKPLVLVDAQCSPDPEFPTVRF-------PNPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIF 313 (459)
Q Consensus 241 ~LG~~~~~~v~~~~~pd~~f~~~~~-------p~p~~~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~ 313 (459)
+|||++ +. +++.|||.||+.+. |+|+.+.+++.+.+. +.++|+|+++||||||++++| + | +++
T Consensus 274 ~lG~~v-~~--v~~~~D~~F~~~~p~~~G~i~~~~~~~~al~~l~~~--~~~aDlgia~DgDaDR~~ivd--~-g--~~l 343 (570)
T 3na5_A 274 HYKLNL-TL--VNDQVDQTFRFMHLDKDGAIRMDCSSECAMAGLLAL--RDKFDLAFANDPDYDRHGIVT--P-A--GLM 343 (570)
T ss_dssp HTTCCE-EE--SCCCCCTTCTTSBCCTTSSCCCCTTCTTTTHHHHTT--GGGCSEEEEECTTSCBEEEEE--T-T--EEC
T ss_pred HcCCeE-EE--ECCEECCCCCCCCCCcccccCCCCCChHHHHHHHHh--ccCCCEEEEECCCCCeEEEEE--C-C--EEE
Confidence 999984 44 49999999997421 256556667777654 789999999999999999999 4 7 789
Q ss_pred cCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEE
Q psy1654 314 TGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAF 393 (459)
Q Consensus 314 ~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~ 393 (459)
+||++++|+++++++. +|+- ..+..|+.|++||.+++++|+++|+++++||||||||+++|.+ .+++|||
T Consensus 344 ~gd~~lal~a~~ll~~----~~~~-~~~~~v~~t~vSs~~l~~ia~~~G~~~~~t~tG~k~i~~~m~~-----~~~~~gg 413 (570)
T 3na5_A 344 NPNHYLAVAINYLFQH----RPLW-GKDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFD-----GSFGFGG 413 (570)
T ss_dssp CHHHHHHHHHHHHTTS----CTTS-CTTCEEEEETTSCTHHHHHHHHHTCCEEEECSSTHHHHHHHHT-----TSEEEEE
T ss_pred CHhHHHHHHHHHHHHh----CCCC-CCCceEEEeeCchHHHHHHHHHCCCceEEecccHHHHHHHHHh-----cCCeEEE
Confidence 9999999999998765 2220 0123588899999999999999999999999999999999864 2689999
Q ss_pred ecCCccccCC-----CcccCcHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccc---ccCcccCCCC
Q psy1654 394 EEAIGFMDGT-----HVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADVYDKGNC---ITGGFIDPKS 454 (459)
Q Consensus 394 E~sgg~~~~~-----~~~~~Dgi~a~l~ile~la~~~~~~~~Ls~ll~~lp~~y~~---~~~~~~~~~~ 454 (459)
||||||+|+. |.+++|||+++++++|++++ +|++|++++++||++|+. .+..++|+|.
T Consensus 414 EeSgg~~f~~~~g~~~~~dkDGi~aal~~le~~a~---~g~~lsell~~l~~~yg~~~~~r~~~~~~~~ 479 (570)
T 3na5_A 414 EESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAV---TGKNPQEHYNELAARFGAPSYNRLQASATSA 479 (570)
T ss_dssp ETTTEEEECCTTSCCSCSSCCHHHHHHHHHHHHHH---HSSCHHHHHHHHHHHHCCCEEEEEEEECCHH
T ss_pred eccCCcccccccccceeecCcHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHhCCceeEEecCCCCHH
Confidence 9999999876 78899999999999999985 799999999999999973 3556677764
No 9
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding, structural genomics; 2.52A {Thermus thermophilus}
Probab=100.00 E-value=1.1e-72 Score=596.42 Aligned_cols=404 Identities=21% Similarity=0.205 Sum_probs=306.1
Q ss_pred ccchhcCCHHHHHHhhcCCcccCCCCccee-cCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHH
Q psy1654 14 KDDAFFKNKEAMSDLFLKRLKFGTAGIRGP-MGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRF 92 (459)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~Fgt~GiRG~-~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l 92 (459)
+.++||....+.+. .+++++|||+||||+ ++. +||++++.++|+|||+++.+... +++|+||||+|.+|+++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~FGT~GiRG~~~~~---~lt~~~v~~i~~a~~~~l~~~~~---~~~VvIG~D~R~~S~~~ 78 (524)
T 2z0f_A 6 LLTLYYEATPDPQN-PLEGVRFGTSGHRGSSLKA---TFTEAHVLAIAQAIAELRPSFGA---TGPLFLAKDTHALSEPA 78 (524)
T ss_dssp HHHHHHHCCCCTTC-GGGSCCEETTEEEECGGGT---SSCHHHHHHHHHHHHHHTTTTTC---CSCEEEEECSCTTHHHH
T ss_pred HHHHHhhcCCCcCC-ccCcCcccCccccCCcccC---CCCHHHHHHHHHHHHHHHHHhCC---CCeEEEEeCCCcchHHH
Confidence 45677877777766 345799999999996 465 89999999999999999975431 24799999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEcC--CCccchhHHHHHHHhc-----CCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHH
Q psy1654 93 AELTASVFLNGGVKRVFLVS--RVCPTPIIAYSIRALN-----LALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQI 165 (459)
Q Consensus 93 ~~a~~~gL~~~G~~~V~~~~--g~~ptP~~~~av~~~~-----~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i 165 (459)
++++++||+++|+ +|++++ |.+|||+++|++++++ +.+||||||||||++||||||++++|.++++...++|
T Consensus 79 ~~~~~~gl~a~Gi-~V~~~~~~G~~pTP~l~~av~~~~~~~~~a~~GImITASHNP~~~NGiK~~~~~G~~~~~~~~~~I 157 (524)
T 2z0f_A 79 WATALSVFAAHGI-EVRVEADGDYTPTPLVSLAILEHNAHHEAKADGVLLTPSHNPPEDGGFKYNPPTGGPANARITRAI 157 (524)
T ss_dssp HHHHHHHHHHTTC-CEEEESSSSCCCHHHHHHHHHHHHTTCSSCCEEEEECC--CCTTCEEEEEECTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCCC-EEEEeCCCCccCcHHHHHHHHHhCCCccccceEEEEcCCCCCchhCCEEEECCCCCcCCHHHHHHH
Confidence 9999999999999 999852 8999999999999999 6999999999999999999999999999875433344
Q ss_pred HHHHHhhccccccccch---hhccCCCCCCCcchHHHHHHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHc
Q psy1654 166 QEEIMRNLEIEDHIWNI---DRIRDQIQPCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLF 242 (459)
Q Consensus 166 ~~~ie~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~L 242 (459)
++.+...+....+++.+ .... +.. ...++.+.|++++++.++ .+.++.+++|||+||+||+++.+++++|++|
T Consensus 158 e~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~d~~~~Y~~~l~~~~~-~~~i~~~~lkivvd~~nG~~~~~~~~ll~~l 233 (524)
T 2z0f_A 158 EERANALLQEGLKGVKRLPLREAL-ARA--KPFDYAGLYVEKVAEAVD-LEAIRASGLRIGVDPLGGASLRVWERLAESH 233 (524)
T ss_dssp HHHHHHHHHTTTTTCCCCCHHHHH-HHC--EEECHHHHHHHHGGGTSC-HHHHHHSCCCEEEECTTSTTHHHHHHHHHHH
T ss_pred HHHHHhhcccccccccccChhhhc-ccc--cccchHHHHHHHHHHhcC-hhhhccCCCeEEEeCCCCchHHHHHHHHHHc
Confidence 43322111000011111 0000 111 135789999999999876 3444557999999999999999999999999
Q ss_pred CCCCeEEeccccccCCCCCCCC-------CCCCCCchhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecC
Q psy1654 243 KFKPLVLVDAQCSPDPEFPTVR-------FPNPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTG 315 (459)
Q Consensus 243 G~~~~~~v~~~~~pd~~f~~~~-------~p~p~~~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~ 315 (459)
||++ +. +++.|||+||+.+ .|+|+.+.+++.+.. ++.++|+|+++||||||++++|+ + ++++|
T Consensus 234 G~~v-~~--v~~~~d~~f~~~~~~~~g~~~p~p~~~~~l~~~~~--~~~~aDlgia~DgDaDR~~vvd~--~---~~l~g 303 (524)
T 2z0f_A 234 GLPL-EV--VNPTLDPTFRFMPKDHDGKIRMDCSSPYAMAGLLA--LKDRFDLAIGNDPDADRHGIVTP--R---GLMNP 303 (524)
T ss_dssp TCCE-EE--C-------------------------------CCC--CCCCSSEEEEECTTSCSEEEEET--T---EECCH
T ss_pred CCcE-EE--EcCccCCCCCCCCCCCccccCCCCCChhHHHHHHH--hhcCCCEEEEeCCccccceEEec--C---ceech
Confidence 9984 44 4999999998632 255555444433321 48899999999999999999994 3 48999
Q ss_pred chhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEec
Q psy1654 316 NELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEE 395 (459)
Q Consensus 316 d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~ 395 (459)
|++++|+++++++.. .+ ++..|+.+++||.+++++|+++|+++++|+||||||.++|.+ .+++|||||
T Consensus 304 d~i~alla~~l~~~~---~~----~~~~vv~t~vss~~l~~ia~~~G~~~~~t~tG~k~i~~~m~~-----~~~~~ggEe 371 (524)
T 2z0f_A 304 NHYLAAALHHLYTTR---SW----PGAKVGKTAVTSALLDRVAQALGREVYETPVGFKHFVAGLLE-----GWLGFAGEE 371 (524)
T ss_dssp HHHHHHHHHHHHTTC---CC----TTCEEEEETTSCTHHHHHHHHTTCCEEEECSSTHHHHHHHHH-----SSEEEEEET
T ss_pred hHHHHHHHHHHHHhc---CC----CCCeEEEecccHHHHHHHHHHhCceEEEcCCcHHHHHHHHhh-----CCcEEEEEc
Confidence 999999999987642 10 123578899999999999999999999999999999999864 268999999
Q ss_pred CCccccCCC-----cccCcHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccc---cCcccCCCC
Q psy1654 396 AIGFMDGTH-----VLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADVYDKGNCI---TGGFIDPKS 454 (459)
Q Consensus 396 sgg~~~~~~-----~~~~Dgi~a~l~ile~la~~~~~~~~Ls~ll~~lp~~y~~~---~~~~~~~~~ 454 (459)
|||++|+.+ .+++|||+++++++|++++ +|++|++++++||++|+.. +..++|+|.
T Consensus 372 Sgg~~~~~~~~~~~~~~~Dgi~aal~~le~~a~---~g~~L~ell~~l~~~~g~~~~~~~~~~~~~~ 435 (524)
T 2z0f_A 372 SAGASFLRFDGRPFSTDKDGILMGLLAAELMAK---RGQAPDALYEALAEKLGRPYYARKDLPVSPE 435 (524)
T ss_dssp TTEEEECCTTSCCSCSSCCHHHHHHHHHHHHHH---HSSCHHHHHHHHHHHHCCCEEEEEEEECCHH
T ss_pred cCcEEECCCCcccccccchHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHhCcceeeeecccchHH
Confidence 999999876 8999999999999999985 7999999999999999865 445677763
No 10
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV}
Probab=100.00 E-value=7e-71 Score=576.43 Aligned_cols=376 Identities=19% Similarity=0.214 Sum_probs=307.5
Q ss_pred cCCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEE
Q psy1654 30 LKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVF 109 (459)
Q Consensus 30 ~~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~ 109 (459)
.+++.|||+||||++ . +|||+++.++|+|||++|.++.....+++|+||||+|.+|++|++++++||+++|+ +|+
T Consensus 7 ~~~~~FGT~GiRG~~-~---~lt~~~v~~~~~a~a~~l~~~~~~~~~~~VvVG~D~R~ss~~~~~a~~~gl~a~Gi-~V~ 81 (481)
T 4hjh_A 7 SNSLKFGTSGLRGLA-V---ELNGLPAYAYTMAFVQMLAAKGQLQKGDKVFVGRDLRPSSPDIAALAMGAIEDAGF-TPV 81 (481)
T ss_dssp -CCCEECSSSEEEEH-H---HHTTHHHHHHHHHHHHHHHHTTSCCTTCEEEEEECSSTTHHHHHHHHHHHHHHTTC-EEE
T ss_pred cccCcccCCCcceec-C---CCCHHHHHHHHHHHHHHHHhhccccCCCeEEEeecCCcCHHHHHHHHHHHHHHCCC-EEE
Confidence 357999999999999 4 79999999999999999976432112568999999999999999999999999999 999
Q ss_pred EcCCCccchhHHHHHHHhcCCeEEEEeCCCCCCCCCceeeEcCCCCccCCcchHHHHHHHHhhccccccccchh-hccCC
Q psy1654 110 LVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNID-RIRDQ 188 (459)
Q Consensus 110 ~~~g~~ptP~~~~av~~~~~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~~~~~~-~~~~~ 188 (459)
++ |.+|||+++|+++++++ +||||||||||++||||||++++|.. .++.+.+|++.+.+ ....+... .. +
T Consensus 82 ~~-g~~pTP~l~fav~~~~~-~GImITASHNP~~~NGiK~~~~~G~~-~~~~e~~I~~~~~~----~~~~~~~~~~~--g 152 (481)
T 4hjh_A 82 NC-GVLPTPALSYYAMGAKA-PSIMVTGSHIPDDRNGLKFYRRDGEI-DKDDEAAISAAYRK----LPAILAARKHV--G 152 (481)
T ss_dssp EE-EECCHHHHHHHHHHTTC-CEEEECCTTSCTTEEEEEEEETTEEC-CHHHHHHHHHHHHT----CCC-CCCCCCC--C
T ss_pred Ee-CCcCcHHHHHHHHhcCC-ceEEEecCCCCCCCCCEEEeCCCCCC-CCHHHHHHHHHHhh----hcccccccccc--C
Confidence 99 99999999999999998 79999999999999999999999954 43333334433321 11111110 11 2
Q ss_pred CCCCCcchHHHH-HHHHHHhcccccCccCCCCceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCC
Q psy1654 189 IQPCPLDSVLEK-YGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPN 267 (459)
Q Consensus 189 ~~~~~~~~~~~~-Y~~~l~~~~~~~~~~~~~~~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~ 267 (459)
.. ..++.+. |++++.+.++. +. .+++||||||+||+++.+++++|++|||++ +.+ ++ ++.|+++ +|+
T Consensus 153 ~~---~~d~~~~~Yi~~~~~~~~~-~~--~~~lkivvd~~~Ga~~~~~~~~l~~lG~~v-~~l--~~--~~~f~~~-~~~ 220 (481)
T 4hjh_A 153 ST---ETDAALQAYADRYAGFLGK-GS--LNGLRVGVYQHSSVARDLLMYLLTTLGVEP-VAL--GR--SDIFVPV-DTE 220 (481)
T ss_dssp SC---CCCHHHHHHHHHHHHHHCT-TT--TTTCEEEEEEETCTTHHHHHHHHHHTTCEE-EEE--EE--CSSCCCC-CTT
T ss_pred cc---cccccHHHHHHHHHHhcCc-cc--ccCCEEEEECCCChHHHHHHHHHHHcCCeE-EEe--cC--CCCCCCC-CCC
Confidence 21 2578888 99999998873 32 368999999999999999999999999984 443 64 4678874 567
Q ss_pred CCCchhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEe
Q psy1654 268 PEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLAS 347 (459)
Q Consensus 268 p~~~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~ 347 (459)
|..+++++.+.+.|++.+||+|+++||||||++++| ++| +++++|++++|+++++. ...|+.|
T Consensus 221 p~~~e~l~~l~~~v~~~~aDlgia~DgDaDR~~vvd--~~G--~~i~gd~l~~L~a~~l~-------------~~~vv~~ 283 (481)
T 4hjh_A 221 ALRPEDIALLAQWGKSDRLDAIVSTDGDADRPLIAD--EHG--QFVRGDLAGAITATWVG-------------ADTLVTP 283 (481)
T ss_dssp SCCHHHHHHHHHHHTSTTCSEEEEECTTSSSEEEEC--TTS--CEECHHHHHHHHHHHTT-------------CSEEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEECCCCCceEEEc--CCC--CEEChHHHHHHHHHHhh-------------cCcEEEE
Confidence 777789999999999999999999999999999998 589 55999999999998751 1248889
Q ss_pred ccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCccccCCC----------cccCcHHHHHHHH
Q psy1654 348 TVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTH----------VLDKDGVTAAVRM 417 (459)
Q Consensus 348 ~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg~~~~~~----------~~~~Dgi~a~l~i 417 (459)
++||.+++++ +| ++++|||||+||+++|++..+.+.+++|||||||||+|+++ ++++|||++++++
T Consensus 284 v~ss~~l~~~---~~-~~~~t~vG~~~i~~~m~~~~~~g~~~~~GgEeSgg~~~~~~~~~d~~~~~~~~~~Dgi~a~l~~ 359 (481)
T 4hjh_A 284 VTSNTALESR---FP-KVLRTRVGSPYVIASMAQVSTGNSGPVIGFEANGGVLLGSTVERNGRSLTALPTRDALLPILAC 359 (481)
T ss_dssp TTSCTTHHHH---CS-CEEEECSSHHHHHHHHHHCC----CCEEEECTTCCEEECSCEEETTEEECCEEEEESHHHHHHH
T ss_pred EcChHHHHHh---cC-ceEEeccchHHHHHHHHHhhccCCCeEEEEeCCCCEEECchhcccccccccCCCccHHHHHHHH
Confidence 9999999887 55 99999999999999998754433468999999999998763 4689999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhcccccCcccCCCCc
Q psy1654 418 AELVAYLDSQGKDLHQLLADVYDKGNCITGGFIDPKSK 455 (459)
Q Consensus 418 le~la~~~~~~~~Ls~ll~~lp~~y~~~~~~~~~~~~~ 455 (459)
+|+++. ++++|++++++||++|++......|||++
T Consensus 360 le~~a~---~g~~Lsell~~l~~~~~~~~~~~~~~~~~ 394 (481)
T 4hjh_A 360 LATVHE---KKTPLSTIARSYGFRVALSDRLQNIPQEA 394 (481)
T ss_dssp HHHHHH---HTCCHHHHHHTTCCCEEEEEEEESCCHHH
T ss_pred HHHHHH---cCCCHHHHHHHHHHHhCCceeecCCCHHH
Confidence 999984 79999999999999998765555788854
No 11
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase, phosphotransferase; HET: SEP; 2.40A {Oryctolagus cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A*
Probab=100.00 E-value=2.9e-70 Score=579.68 Aligned_cols=387 Identities=22% Similarity=0.267 Sum_probs=312.9
Q ss_pred CcccCCCCcceecCC--CCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEE
Q psy1654 32 RLKFGTAGIRGPMGV--GFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVF 109 (459)
Q Consensus 32 ~~~Fgt~GiRG~~~~--~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~ 109 (459)
-.+|||+||||.+|+ ...++||+++.+|++|+|+.+.+ +++|+||||+|.+|++++++++++|+++|+ +|+
T Consensus 13 ~~~fGTsGiRG~v~~~~~~~~~t~~f~~~l~~A~g~~~~~------g~~VvVG~D~R~~s~~~~~~~a~~l~a~Gv-~V~ 85 (561)
T 3pmg_A 13 DQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQ------EATLVVGGDGRFYMKEAIQLIVRIAAANGI-GRL 85 (561)
T ss_dssp CCCCBTTBEEEEHHHHHHSTTHHHHHHHHHHHTSCGGGTT------TCEEEEEECCCTTHHHHHHHHHHHHHHTTC-CEE
T ss_pred CCCCCCCCcCeeeCCCCCCcCccHHHHHHHHHHHHhhhcC------CCEEEEEeCCCccHHHHHHHHHHHHHHCCC-EEE
Confidence 479999999999986 22478999999999999876643 578999999999999999999999999999 999
Q ss_pred EcC--CCccchhHHHHHHHhcCCeEEEEeCCCCC---CCCCceeeEcCCCCccCCcchHHHHHHHHhhccccc-------
Q psy1654 110 LVS--RVCPTPIIAYSIRALNLALGIMITASHNP---KEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIED------- 177 (459)
Q Consensus 110 ~~~--g~~ptP~~~~av~~~~~~gGi~ITaShnp---~~~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~------- 177 (459)
++. |.+|||+++|+++++++++|||||||||| ++||||||++++|.+++.. ++++|++......
T Consensus 86 ~~~~~g~~pTP~vs~av~~~~a~gGImITASHNP~~~~~~nGiK~~~~~G~~~~~~----~~~~Ie~~~~~i~~~~~~~~ 161 (561)
T 3pmg_A 86 VIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGDFGIKFNISNGGPAPEA----ITDKIFQISKTIEEYAICPD 161 (561)
T ss_dssp EEEEEEECCHHHHHHHHHHHTCSEEEEECCTTSCCSTTSEEEEEEEETTSSBCCHH----HHHHHHHHHHHCCEEEECTT
T ss_pred EecCCCccCHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCcceEEEEeCCCCcCCHH----HHHHHHHHHHhhhhhccccc
Confidence 883 79999999999999999999999999999 5699999999999998754 4444444321100
Q ss_pred --cccchh---hccC-C-----CCCCCcchHHHHHHHHHHhcccccCccCC-----CCceEEEeCCCCCCHHHHHHHH-H
Q psy1654 178 --HIWNID---RIRD-Q-----IQPCPLDSVLEKYGQSVLDGAYDLGLNEK-----SQVVITYSAMHGVGYPYVNQLF-K 240 (459)
Q Consensus 178 --~~~~~~---~~~~-~-----~~~~~~~~~~~~Y~~~l~~~~~~~~~~~~-----~~~kVvvD~~~G~~~~~~~~ll-~ 240 (459)
.++... .... + .+. ..+..+.|++.+.+.++ .+.++. +++|||+||+||+++.+++++| +
T Consensus 162 ~~~~~~~ig~~~~~~~~~~~~~~~~--~~d~~~~Yi~~l~~~~d-~~~i~~~~~~~~~lkIvvD~~~Ga~~~~~~~il~~ 238 (561)
T 3pmg_A 162 LKVDLGVLGKQQFDLENKFKPFTVE--IVDSVEAYATMLRNIFD-FNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCE 238 (561)
T ss_dssp CCCCTTSCEEEEECCTTCSSCEEEE--EECSSHHHHHHHHTTSC-HHHHHHHHHSTTCCCEEEECTTSTTHHHHHHHHTT
T ss_pred cccchhhhccccccccccccCCceE--ecChHHHHHHHHHHhcC-hHHhhhhhccCCCcEEEEECCCCchHHHHHHHHHH
Confidence 011100 0000 0 011 24567899999999887 333332 6899999999999999999987 8
Q ss_pred HcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCchhhH
Q psy1654 241 LFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGA 320 (459)
Q Consensus 241 ~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d~l~~ 320 (459)
+|||+++.+ +|+.||+.||++ +|+|+. +.+..+.+.|++.++|+|+++||||||++++|+ +| ++++++++++
T Consensus 239 ~lG~~v~~~--v~~~pd~~F~~~-~P~P~~-~~~~~L~~~v~~~~aDlgia~DgDaDR~~ivd~--~G--~~v~~~~~la 310 (561)
T 3pmg_A 239 ELGAPANSA--VNCVPLEDFGGH-HPDPNL-TYAADLVETMKSGEHDFGAAFDGDGDRNMILGK--HG--FFVNPSDSVA 310 (561)
T ss_dssp TTCCCGGGE--ESCSCCTTGGGS-CCCCST-TTTHHHHHHHHTSCCSEEEEECTTSSCEEEEEG--GG--CBCCHHHHHH
T ss_pred HcCCCeEEE--ECCEECCCCCCC-CCCCCh-HHHHHHHHHHHhcCCCEEEEEcCCCCeEEEEeC--CC--cEECccHHHH
Confidence 999986213 399999999985 688876 456778888999999999999999999999994 79 5699999999
Q ss_pred HHHHHHHHH--hhhcCCCCCCCCceEEEeccchHHHHHHHHHcCCcEEEecccceeccccchHHhhcCCeEEEEEecCCc
Q psy1654 321 LFGWWALHR--LKSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIG 398 (459)
Q Consensus 321 L~a~~ll~~--~~~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg 398 (459)
|++.+++.. ++... . ..||.|++||.+++++|+++|++++||||||||++++|.+ .+++||||||||
T Consensus 311 lla~~l~~~~~~~~~~-~-----~~vv~tv~Ss~~ld~va~~~G~~v~~t~vG~k~i~~~m~~-----~~~~~gGEeS~G 379 (561)
T 3pmg_A 311 VIAANIFSIPYFQQTG-V-----RGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDA-----SKLSLCGEESFG 379 (561)
T ss_dssp HHHHTGGGSHHHHHHC-C-----CCEEEETTSCTHHHHHHHTSSSCEEEECSSHHHHHHHHHT-----TCCSEEEETTTE
T ss_pred HHHHHHHhhhhhHhcC-C-----CeEEEEechHHHHHHHHHHcCCCEEEEeccHHHHHHHhcc-----CCeEEEEEecCC
Confidence 999986421 11111 1 2489999999999999999999999999999999998754 267899999988
Q ss_pred cccCCCcccCcHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccc---ccCc-ccCCCCc
Q psy1654 399 FMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADVYDKGNC---ITGG-FIDPKSK 455 (459)
Q Consensus 399 ~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~~Ls~ll~~lp~~y~~---~~~~-~~~~~~~ 455 (459)
+ ++.|.+++|||+++++++++++. +|++|+|++++||++||. .+.. ..|||++
T Consensus 380 ~-~~~~~~~kDGi~aal~~le~la~---~g~~lsell~~l~~~yG~~~~~r~d~~~~~~~~ 436 (561)
T 3pmg_A 380 T-GSDHIREKDGLWAVLAWLSILAT---RKQSVEDILKDHWHKFGRNFFTRYDYEEVEAEG 436 (561)
T ss_dssp E-EETTSSSCCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHCEEEEEEEEEEEECHHH
T ss_pred c-CCCeeecCCHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHhCcccccccccccCCHHH
Confidence 6 67899999999999999999984 899999999999999972 2222 3488865
No 12
>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis, isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A
Probab=100.00 E-value=1.3e-68 Score=570.07 Aligned_cols=380 Identities=23% Similarity=0.259 Sum_probs=311.5
Q ss_pred CCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCC-eEEEEeCCCCChHHHHHHHHHHHHhCCCcEEE
Q psy1654 31 KRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKES-GIIVGYDGRHNSKRFAELTASVFLNGGVKRVF 109 (459)
Q Consensus 31 ~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~-~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~ 109 (459)
++++|||+||||++++ ++||+.+.++++|++.+|.+... +++ +|+||||+|.+|++|+++++++|+++|+ +|+
T Consensus 17 ~~~~FGT~GiRG~~~~---~~t~~~~~~~~~a~~~~l~~~~~--~~~~~VvIG~D~R~sS~~~a~~~a~~l~a~Gi-~V~ 90 (572)
T 1kfi_A 17 AGQKPGTSGLRKKVSE---ATQPNYLENFVQSIFNTLRKDEL--KPKNVLFVGGDGRYFNRQAIFSIIRLAYANDI-SEV 90 (572)
T ss_dssp TTCCCBTTBEEEEHHH---HTSTTHHHHHHHHHHHHSCGGGS--SSSCEEEEEECCCTTHHHHHHHHHHHHHHTTC-SEE
T ss_pred ccCCccCCccceEecc---eecHHHHHHHHHHHHHHHhhhcc--CCCCEEEEEecCCCCHHHHHHHHHHHHHHCCC-EEE
Confidence 4689999999999998 79999999999999999864311 145 8999999999999999999999999999 999
Q ss_pred Ec--CCCccchhHHHHHHHh-----cCCeEEEEeCCCCCC--C--CCceeeEcCCCCccCCcchHHHHHHHHhhcccccc
Q psy1654 110 LV--SRVCPTPIIAYSIRAL-----NLALGIMITASHNPK--E--DNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDH 178 (459)
Q Consensus 110 ~~--~g~~ptP~~~~av~~~-----~~~gGi~ITaShnp~--~--~nGiK~~~~~G~~l~~~~~~~i~~~ie~~~~~~~~ 178 (459)
++ .|.+|||+++|+++++ ++++||||||||||+ + ||||||++++|.+++.+ +++.|++.+.....
T Consensus 91 ~~~~~G~~pTP~l~fav~~~n~~~~~a~~GImITASHNP~~~~~~~NGiK~~~~~G~~~~~~----~~~~Ie~~~~~~~~ 166 (572)
T 1kfi_A 91 HVGQAGLMSTPASSHYIRKVNEEVGNCIGGIILTASHNPGGKEHGDFGIKFNVRTGAPAPED----FTDQIYTHTTKIKE 166 (572)
T ss_dssp EEEGGGCBCHHHHHHHHHHHHHHSCCEEEEEEECCTTSCCSTTTCEEEEEEECTTSSBCCHH----HHHHHHHHHTTCCE
T ss_pred EecCCCCCChHHHHHHHHHhccccCCcceEEEEeCCCCCCCcCcccCcEEEecCCCCcCCHH----HHHHHHHHHHhhhc
Confidence 88 3899999999999999 999999999999995 4 99999999999998755 44444444321000
Q ss_pred ----------ccchhhcc-----C-------CCCCCCcchHHHHHHHHHHhcccccCccC----CCCceEEEeCCCCCCH
Q psy1654 179 ----------IWNIDRIR-----D-------QIQPCPLDSVLEKYGQSVLDGAYDLGLNE----KSQVVITYSAMHGVGY 232 (459)
Q Consensus 179 ----------~~~~~~~~-----~-------~~~~~~~~~~~~~Y~~~l~~~~~~~~~~~----~~~~kVvvD~~~G~~~ 232 (459)
.+.....+ . +... ..++.+.|++++++.++ .+.++ .+++|||+||+||+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~d~~~~Yi~~l~~~~~-~~~i~~~l~~~~lkIvvd~~nG~~~ 243 (572)
T 1kfi_A 167 YLTVDYEFEKHINLDQIGVYKFEGTRLEKSHFEVK--VVDTVQDYTQLMQKLFD-FDLLKGLFSNKDFSFRFDGMHGVAG 243 (572)
T ss_dssp EEECCCCGGGTCCTTSCEEEEEEBCCTTCCEEEEE--EECSSHHHHHHHHHHSC-HHHHHHHHTCTTCCEEEECTTSTHH
T ss_pred ccccccccccccChhhcccccccccccccccccee--ecCcHHHHHHHHHHhcC-HHHHhhhcccCCCEEEEeCCCcchH
Confidence 00000000 0 0111 23677899999999876 23232 2689999999999999
Q ss_pred HHHHHHHH-HcCCC-CeEEeccccccCCCCCCCCCCCCCCchhHHHHHHHH-------HhcCCcEEEEeCCCCCeEEEEE
Q psy1654 233 PYVNQLFK-LFKFK-PLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTA-------DQHGSTVILANDPDADRLAVAE 303 (459)
Q Consensus 233 ~~~~~ll~-~LG~~-~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v-------~~~~adlGia~D~DgDRl~vvd 303 (459)
.+++++|+ +|||+ + +.+ |+.|||.||+ ++|+|+. +++..+...+ ++.++|+|+++||||||++++|
T Consensus 244 ~~~~~il~~~lG~~~v-~~l--~~~pD~~Fp~-~~p~P~~-~~~~~L~~~v~~~~~~a~~~~aDlgiA~DgDaDR~~vvd 318 (572)
T 1kfi_A 244 PYAKHIFGTLLGCSKE-SLL--NCDPSEDFGG-GHPDPNL-TYAHDLVELLDIHKKKDVGTVPQFGAACDGDADRNMILG 318 (572)
T ss_dssp HHHHHHHTTTTCCCGG-GEE--SCSCCTTGGG-SCCCCST-TTTHHHHHHTTTTCCSCGGGSCSEEEEECTTSCBEEEEE
T ss_pred HHHHHHHHHhCCCCeE-EEE--ecccCCCCCC-CCCCCCc-hhHHHHHHHHhhhhccccccCCCeEEeeCCCCceeEEee
Confidence 99999998 99996 5 343 9999999998 4678875 4677888888 8999999999999999999998
Q ss_pred ecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccchHHHHHHHHHcCCcEEEecccceeccccchHHh
Q psy1654 304 KAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLE 383 (459)
Q Consensus 304 ~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~~G~~~i~~~~~~~~ 383 (459)
+| ++++++++++|++.+++..++ ++. ..||.|++||.+++++|+++|+++++|+|||||+.++|++
T Consensus 319 ---~G--~~v~~~~~l~ll~~~~l~~~~---~g~----~~Vv~~~~ss~~l~~ia~~~G~~~~~t~tG~k~i~~~m~~-- 384 (572)
T 1kfi_A 319 ---RQ--FFVTPSDSLAVIAANANLIFK---NGL----LGAARSMPTSGALDKVAAKNGIKLFETPTGWKFFGNLMDA-- 384 (572)
T ss_dssp ---TT--EEECHHHHHHHHHHTHHHHST---TCC----CCEEEETTSCTHHHHHHHHHTCCEEEECSSTHHHHHHHHT--
T ss_pred ---CC--eEecccHhHHHHHHHHHHHhc---CCC----cEEEEEeCchHHHHHHHHHcCCeEEEeCCcHHHHHHHHhc--
Confidence 58 679999999999998876522 121 1488999999999999999999999999999999998854
Q ss_pred hcCCeEEEEEecCCccccCCCcccCcHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHhccccc
Q psy1654 384 QEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGK---DLHQLLADVYDKGNCIT 446 (459)
Q Consensus 384 ~~~~~~~l~~E~sgg~~~~~~~~~~Dgi~a~l~ile~la~~~~~~~---~Ls~ll~~lp~~y~~~~ 446 (459)
.+++||||||||+ ++.|.+++|||+++++++|++++.+.+|+ +|+|++++|+++|++++
T Consensus 385 ---~~~~~ggEeSgg~-~~~~~~~kDgi~a~l~~le~la~~~~~g~~~~tL~ell~~l~~~yp~~~ 446 (572)
T 1kfi_A 385 ---GLINLCGEESFGT-GSNHIREKDGIWAVLAWLTILAHKNKNTDHFVTVEEIVTQYWQQFGRNY 446 (572)
T ss_dssp ---TSCSEEEETTTEE-EETTSSSCCHHHHHHHHHHHHHHHTSSCSSCCCHHHHHHHHHHHHCEEE
T ss_pred ---CCcEEEEeccCCc-cccccCCCccHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHcCcee
Confidence 2678999999996 68899999999999999999997554433 99999999999998543
No 13
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A*
Probab=100.00 E-value=2.6e-50 Score=426.43 Aligned_cols=347 Identities=20% Similarity=0.216 Sum_probs=250.9
Q ss_pred cCCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEE
Q psy1654 30 LKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVF 109 (459)
Q Consensus 30 ~~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~ 109 (459)
.++..|||+|+||.. ++||+++.++|+|+|..
T Consensus 19 ~~~~~fGt~G~RG~~-----~~~~~~~~~~g~a~~~r------------------------------------------- 50 (544)
T 2dka_A 19 GVTFTYGTAGFRMKA-----DKLDYVTFTVGIIASLR------------------------------------------- 50 (544)
T ss_dssp SCCCCCBTTBEEEEG-----GGCHHHHHHHHHHHHHH-------------------------------------------
T ss_pred CCeeEeCCCCccccc-----ccCHHHHHHHHHHHHHH-------------------------------------------
Confidence 467999999999977 59999999999999871
Q ss_pred EcCCCccchhHHHHHHHhc-CCeEEEEeCCCCCCCCCceeeEcCCCCccCCcch---------------------HHHHH
Q psy1654 110 LVSRVCPTPIIAYSIRALN-LALGIMITASHNPKEDNGYKLYDSKGCQIISPID---------------------KQIQE 167 (459)
Q Consensus 110 ~~~g~~ptP~~~~av~~~~-~~gGi~ITaShnp~~~nGiK~~~~~G~~l~~~~~---------------------~~i~~ 167 (459)
+++++ +.+||||||||||++||||||++++|.+++.+.+ ++|++
T Consensus 51 --------------~~~~~~~~~GImITASHNP~~dNGiK~~~~~G~~l~~~~e~~~~~~an~~~~~~~~~~~~~~~I~~ 116 (544)
T 2dka_A 51 --------------SKYLQGKTVGVMITASHNPPEDNGVKVVDPLGSMLESSWEKYATDLANASPSPSNDSEGEKNSLVE 116 (544)
T ss_dssp --------------HHHTTTCEEEEEECCC-CCTTEEEEEEECTTSSBCCGGGHHHHHHHHHSBSCC------CTTBHHH
T ss_pred --------------HHhcCCcCceEEEeCCCCCcccCceeeecCCCCcCCHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 46777 8999999999999999999999999999987644 45555
Q ss_pred HHHhhccccccccc-------------hhh--------------c-----cC-CCCCCCc--------------chHHHH
Q psy1654 168 EIMRNLEIEDHIWN-------------IDR--------------I-----RD-QIQPCPL--------------DSVLEK 200 (459)
Q Consensus 168 ~ie~~~~~~~~~~~-------------~~~--------------~-----~~-~~~~~~~--------------~~~~~~ 200 (459)
.|++.+.. .+++ +.. . .. |.+..|. ....+.
T Consensus 117 ~i~~~~~~--~~~~~~~~~~v~vg~d~r~s~~~l~~al~~gl~~~~G~~v~~~G~~ttP~l~~~v~~~~~~~~g~~~~~~ 194 (544)
T 2dka_A 117 VIKNLVSD--LKIDLSIPANVVIARDSRESSPALSMATIDGFQSVPNTKYQDFGLFTTPELHYVTRTLNDPDFGKPTEDG 194 (544)
T ss_dssp HHHHHHHH--TTCCTTSCEEEEEEECSCTTHHHHHHHHHHHHHTSSSEEEEEEEECCHHHHHHHHHHHHCGGGCCSSHHH
T ss_pred HHHHHHhh--hcCCcccCceEEeccCCCCCCHHHHHHHHhhhhhhcCCeEEEecccccchheeeeeeccccccCCccHHH
Confidence 44333211 0111 000 0 00 1111000 125679
Q ss_pred HHHHHHhccccc-C--ccCCCCceEEEeCCCCCCHHHHHHH-HHHc--CCCCeEEecccccc-CCCCCCCCCCCCCCchh
Q psy1654 201 YGQSVLDGAYDL-G--LNEKSQVVITYSAMHGVGYPYVNQL-FKLF--KFKPLVLVDAQCSP-DPEFPTVRFPNPEEPSS 273 (459)
Q Consensus 201 Y~~~l~~~~~~~-~--~~~~~~~kVvvD~~~G~~~~~~~~l-l~~L--G~~~~~~v~~~~~p-d~~f~~~~~p~p~~~~~ 273 (459)
|++++.+.++.. . .++.+++||||||+||+++.+++++ |++| ||++ +. +|+.| ||.|++ +.|+|.....
T Consensus 195 Y~~~l~~~~~~~~~~~~~~~~~lkIvvD~~nGag~~~~~~i~l~~L~~G~~v-~~--ln~~~dd~~~~n-~~~~~~~~~~ 270 (544)
T 2dka_A 195 YYSKLAKSFQEIYTICESNNEKIDITIDAANGVGAPKIQELLEKYLHKEISF-TV--VNGDYKQPNLLN-FDCGADYVKT 270 (544)
T ss_dssp HHHHHHHHHHHHHTC-----CCEEEEEECTTSTHHHHHHHHHHHHSTTTEEE-EE--ESCCTTCGGGTT-SSCSHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccCCCCEEEEECCCcHHHHHHHHHHHHHhcCCceE-EE--EcCcCCCCCcCC-CCCCccchhh
Confidence 999999886421 1 1233579999999999999999999 9999 8974 44 49999 799988 4565533222
Q ss_pred HHHHHHHHHhcCCcEEEEeCCCCCeEEEE--EecCCCCeEEecCchhhHHHHHHHHHHhhhcCCCCCCCCceEEEeccch
Q psy1654 274 LDLAVKTADQHGSTVILANDPDADRLAVA--EKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSS 351 (459)
Q Consensus 274 l~~~~~~v~~~~adlGia~D~DgDRl~vv--d~~~~G~~~~~~~d~l~~L~a~~ll~~~~~~~~~~~~~~~~vv~~~~ss 351 (459)
+..+.+.+....+|+|+++||||||++++ | ++|+|++++||++++|+++++++..+..++.....+..||.|++||
T Consensus 271 ~~~~~~~~~~~~aDlGiA~DgDaDR~~iv~~D--~~G~~~~l~gd~i~aLla~~l~~~~~~~~~~~~~~~~~vv~tv~sn 348 (544)
T 2dka_A 271 NQKLPKNVKPVNNKLYASFDGDADRLICYYQN--NDNKFKLLDGDKLSTLFALFLQQLFKQIDPTKISLNIGVVQTAYAN 348 (544)
T ss_dssp HCSCCTTCCCCBTCCEEEECTTSCCEEEEEEC--TTSCEEEECHHHHHHHHHHHHHHHHTTSCTTTCCCCEEEEECTTSC
T ss_pred hhhhhhhhhcccccEEEEECCCCCceEEEEEc--CCCCeEEeCHHHHHHHHHHHHHHhcccCCCcccccCCcEEEEeccc
Confidence 22222223446789999999999999999 7 5899999999999999999998764321100011134688897766
Q ss_pred HHHHHHHHH-cCCcEEEecccceeccccchHHhhcCCeEEEEEecCCc--cccCCCc-----------------------
Q psy1654 352 KILHTIAQA-EGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIG--FMDGTHV----------------------- 405 (459)
Q Consensus 352 ~~l~~ia~~-~g~~v~~t~~G~~~i~~~~~~~~~~~~~~~l~~E~sgg--~~~~~~~----------------------- 405 (459)
..+.+.+++ +|+++++|||||||++++|.+ .++.+|||+||| ++|+++.
T Consensus 349 ~~~~~~i~~~~G~~v~~t~vG~k~v~~~m~~-----~~~~~ggE~sGhg~~if~~~~~~~~~~~~~~~~~~kd~~~~~~~ 423 (544)
T 2dka_A 349 GSSTKYVEDVLKIPVRCTPTGVKHLHHEAEN-----FDIGVYFEANGHGTVIFNPEAEKKIFDYKPNNDNEAKAIKVLQN 423 (544)
T ss_dssp HHHHHHHHHTSCCCEEECCSSHHHHHHHHTT-----SSEEEEECTTSCEEEEECHHHHHHHHHCCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCceEEEeCcHHHHHHHHHh-----cCCcEEEcccCCeeEEECchhhhhhcccccCChhHHHHHHHHHH
Confidence 666555555 999999999999999999865 378999999987 7788663
Q ss_pred -------ccCcHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCcccCCCCc
Q psy1654 406 -------LDKDGVTAAVRMAELVAYLDSQGKDLHQLLADVYDKGNCITGGFIDPKSK 455 (459)
Q Consensus 406 -------~~~Dgi~a~l~ile~la~~~~~~~~Ls~ll~~lp~~y~~~~~~~~~~~~~ 455 (459)
.++||+.++++++++++. .|++|++++..+|. |......+.|+|..
T Consensus 424 ~~~l~a~~tgd~l~~~l~vl~~~~~---~g~~lsel~~~~~~-~p~~~~~v~v~~~~ 476 (544)
T 2dka_A 424 FSQLINQTVGDAISDLLAVLIVVHY---LKLSPSDWDNEYTD-LPNKLVKVIVPDRS 476 (544)
T ss_dssp HHHHSCSSSCCHHHHHHHHHHHHHH---TTCCHHHHHTTSCC-CCEEEEEC------
T ss_pred HHHHhhcccCCCHHHHHHHHHHHHH---hCCCHHHHHhhhhc-cCchhhccccchhh
Confidence 468999999999998874 89999999999886 66666688888764
No 14
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A*
Probab=97.35 E-value=0.00014 Score=76.60 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=48.0
Q ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHhC-CCcEEEEcCCCccchhHHHHHHHhcC
Q psy1654 76 ESGIIVGYDGRHNSKRFAELTASVFLNG-GVKRVFLVSRVCPTPIIAYSIRALNL 129 (459)
Q Consensus 76 ~~~VvVg~D~R~~s~~l~~a~~~gL~~~-G~~~V~~~~g~~ptP~~~~av~~~~~ 129 (459)
...|+||||+|++|+.+.+++++||.+. |+ +|.++ |.++||+++|+++..+.
T Consensus 132 ~~~v~vg~d~r~s~~~l~~al~~gl~~~~G~-~v~~~-G~~ttP~l~~~v~~~~~ 184 (544)
T 2dka_A 132 PANVVIARDSRESSPALSMATIDGFQSVPNT-KYQDF-GLFTTPELHYVTRTLND 184 (544)
T ss_dssp CEEEEEEECSCTTHHHHHHHHHHHHHTSSSE-EEEEE-EECCHHHHHHHHHHHHC
T ss_pred CceEEeccCCCCCCHHHHHHHHhhhhhhcCC-eEEEe-cccccchheeeeeeccc
Confidence 4579999999999999999999999999 99 99999 99999999998877653
No 15
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=89.34 E-value=1.5 Score=37.47 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=42.9
Q ss_pred CeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCcc-----chhHHHHH----HHhcCCeEEEEeCC
Q psy1654 77 SGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCP-----TPIIAYSI----RALNLALGIMITAS 138 (459)
Q Consensus 77 ~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~p-----tP~~~~av----~~~~~~gGi~ITaS 138 (459)
-+|+||.| ..+-.||+.+.+-|.+.|. +|.|+ |.-+ -|-+...+ ..-.++-||.|-+|
T Consensus 13 ~~i~igsD--haG~~lK~~i~~~L~~~G~-eV~D~-G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 79 (155)
T 1o1x_A 13 VKIAIASD--HAAFELKEKVKNYLLGKGI-EVEDH-GTYSEESVDYPDYAKKVVQSILSNEADFGILLCGT 79 (155)
T ss_dssp CEEEEEEC--STTHHHHHHHHHHHHHTTC-EEEEC-CCCSSSCCCHHHHHHHHHHHHHTTSCSEEEEEESS
T ss_pred eeEEEeeC--chHHHHHHHHHHHHHHCCC-EEEEe-CCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCC
Confidence 47999999 7899999999999999999 99999 7532 34333333 23345667777664
No 16
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=87.71 E-value=1.5 Score=37.33 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=41.2
Q ss_pred eEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCcc-----chhHHHHH----HHhcCCeEEEEeCC
Q psy1654 78 GIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCP-----TPIIAYSI----RALNLALGIMITAS 138 (459)
Q Consensus 78 ~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~p-----tP~~~~av----~~~~~~gGi~ITaS 138 (459)
+|+||.| .++..+|+.+.+-|.+.|. +|.|+ |.-+ -|-+...+ ..-.++-||.|-+|
T Consensus 3 kIaigsD--haG~~lK~~i~~~L~~~G~-eV~D~-G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 68 (149)
T 2vvr_A 3 KIAFGCD--HVGFILKHEIVAHLVERGV-EVIDK-GTWSSERTDYPHYASQVALAVAGGEVDGGILICGT 68 (149)
T ss_dssp EEEEEEC--TTGGGGHHHHHHHHHHTTC-EEEEC-CCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred EEEEEeC--chhHHHHHHHHHHHHHCCC-EEEEe-CCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCC
Confidence 5899999 7788999999999999999 99999 7532 34333333 22345567766554
No 17
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=87.24 E-value=1.8 Score=37.35 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=42.5
Q ss_pred eEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCC------ccchhHHHH----HHHhcCCeEEEEeCC
Q psy1654 78 GIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRV------CPTPIIAYS----IRALNLALGIMITAS 138 (459)
Q Consensus 78 ~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~------~ptP~~~~a----v~~~~~~gGi~ITaS 138 (459)
+|+||.| ..+..+|+.+.+-|.+.|. +|.|+ |. +.-|-+... +..-.++-||.|-+|
T Consensus 5 kIaigsD--haG~~lK~~i~~~L~~~G~-eV~D~-G~~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 71 (162)
T 2vvp_A 5 RVYLGAD--HAGYELKQRIIEHLKQTGH-EPIDC-GALRYDADDDYPAFCIAAATRTVADPGSLGIVLGGS 71 (162)
T ss_dssp EEEEEEC--HHHHHHHHHHHHHHHHTTC-EEEEC-SCCSCCTTCCHHHHHHHHHHHHHHSTTCEEEEEESS
T ss_pred EEEEEeC--chhHHHHHHHHHHHHHCCC-EEEEe-CCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCC
Confidence 6999999 7889999999999999999 99999 73 223433333 333356677777664
No 18
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=86.13 E-value=2.9 Score=35.54 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=41.8
Q ss_pred eEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCcc-----chhHHHHH----HHhcCCeEEEEeCC
Q psy1654 78 GIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCP-----TPIIAYSI----RALNLALGIMITAS 138 (459)
Q Consensus 78 ~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~p-----tP~~~~av----~~~~~~gGi~ITaS 138 (459)
+|+||.| ..+-.||+.+.+-|.+.|. +|.|+ |.-+ -|-+...+ ..-.++-||.|-+|
T Consensus 2 kI~igsD--haG~~lK~~i~~~L~~~G~-eV~D~-G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 67 (149)
T 3he8_A 2 KIGIGSD--HGGYNLKREIADFLKKRGY-EVIDF-GTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGT 67 (149)
T ss_dssp EEEEEEC--GGGHHHHHHHHHHHHHTTC-EEEEC-CCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred EEEEEEC--chhHHHHHHHHHHHHHCCC-EEEEc-CCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 5899999 7889999999999999999 99999 7433 24444333 33345667766554
No 19
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=84.59 E-value=3.7 Score=35.62 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=42.4
Q ss_pred CeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCcc-----chhHHHHH----HHhcCCeEEEEeCC
Q psy1654 77 SGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCP-----TPIIAYSI----RALNLALGIMITAS 138 (459)
Q Consensus 77 ~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~p-----tP~~~~av----~~~~~~gGi~ITaS 138 (459)
-+|+||.| ..+-.||+.+.+-|.+.|. +|.|+ |.-+ -|-+...+ ..-.++-||.|-+|
T Consensus 21 MkIaIgsD--haG~~lK~~i~~~L~~~G~-eV~D~-G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 87 (169)
T 3ph3_A 21 MKIGIGSD--HGGYNLKREIADFLKKRGY-EVIDF-GTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGT 87 (169)
T ss_dssp CEEEEEEC--GGGHHHHHHHHHHHHHTTC-EEEEC-CCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred CEEEEEeC--chHHHHHHHHHHHHHHCCC-EEEEc-CCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 36999999 7788999999999999999 99999 7433 24444333 23345667766554
No 20
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=81.06 E-value=4.7 Score=34.80 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=42.1
Q ss_pred CeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCcc-----chhHHHHH----HHhcCCeEEEEeCC
Q psy1654 77 SGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCP-----TPIIAYSI----RALNLALGIMITAS 138 (459)
Q Consensus 77 ~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~p-----tP~~~~av----~~~~~~gGi~ITaS 138 (459)
-+|+||.| ..+-.||+.+.+-|.+.|. +|.|+ |.-+ -|-+...+ ..-.++-||.|-+|
T Consensus 22 MkIaIgsD--haG~~lK~~i~~~L~~~G~-eV~D~-G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCGT 88 (166)
T 3s5p_A 22 MKVAFASD--HGGRDLRMFLQQRASAHGY-EVMDL-GTESDASVDYPDFAKIGCEAVTSGRADCCILVCGT 88 (166)
T ss_dssp CEEEEEEC--GGGHHHHHHHHHHHHHTTC-EEEEE-EC--------CHHHHHHHHHHHTTSCSEEEEEESS
T ss_pred eEEEEEEC--chHHHHHHHHHHHHHHCCC-EEEEc-CCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCC
Confidence 37999999 7889999999999999999 99999 7433 34333332 33345667777664
No 21
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=76.76 E-value=9.6 Score=32.28 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=41.2
Q ss_pred CeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCc------cchhHHHHHHHh--cCCeEEEEeCC
Q psy1654 77 SGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVC------PTPIIAYSIRAL--NLALGIMITAS 138 (459)
Q Consensus 77 ~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~------ptP~~~~av~~~--~~~gGi~ITaS 138 (459)
.+|+||.| ..+-.||+.+.+-|.+.|. +|.|+ |.- .-|-+...+... .++-||.|-+|
T Consensus 8 mkI~igsD--haG~~lK~~i~~~L~~~G~-eV~D~-G~~~~~~~~dYpd~a~~va~~V~~~d~GIliCGT 73 (148)
T 4em8_A 8 KRVFLSSD--HAGVELRLFLSAYLRDLGC-EVFDC-GCDPKEHSVDYPDYVHDVVREVSDTSFGVLICGT 73 (148)
T ss_dssp SEEEEEEC--GGGHHHHHHHHHHHHHTTC-EEEEC-CCCTTCSCCCGGGGTHHHHTTCBTTBEEEEEESS
T ss_pred eEEEEEEC--chhHHHHHHHHHHHHHCCC-EEEEe-CCCCCCCCCChHHHHHHHHHHHHHhCeEEEEccC
Confidence 36999999 7889999999999999999 99999 642 224333333221 34556655554
No 22
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=72.96 E-value=7.7 Score=33.88 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=41.7
Q ss_pred eEEEEeCCCCChHHHHHHHHHHHHh--CCCcEEEEcCCCcc-----chhHHHHH----HHhcCCeEEEEeCC
Q psy1654 78 GIIVGYDGRHNSKRFAELTASVFLN--GGVKRVFLVSRVCP-----TPIIAYSI----RALNLALGIMITAS 138 (459)
Q Consensus 78 ~VvVg~D~R~~s~~l~~a~~~gL~~--~G~~~V~~~~g~~p-----tP~~~~av----~~~~~~gGi~ITaS 138 (459)
+|+||.| ..+-.||+.+.+-|.+ .|. +|.|+ |.-+ -|-+...+ ..-.++-||.|-+|
T Consensus 24 kIaIgsD--haG~~lK~~i~~~L~~~~~G~-eV~D~-G~~s~~s~DYPd~a~~vA~~V~~g~~d~GIliCGT 91 (179)
T 3k7p_A 24 RVAIGTD--HPAFAIHENLILYVKEAGDEF-VPVYC-GPKTAESVDYPDFASRVAEMVARKEVEFGVLAAGS 91 (179)
T ss_dssp EEEEEEC--TGGGGGHHHHHHHHHHTCTTE-EEEEC-SCSSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred EEEEEEC--chHHHHHHHHHHHHHhcCCCC-eEEEc-CCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEccC
Confidence 6999999 6788999999999999 999 99999 7432 34443333 33345667766554
No 23
>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A*
Probab=72.68 E-value=9.1 Score=33.57 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=42.3
Q ss_pred CeEEEEeCCCCChHHHHHHHHHHHHhCC--CcEEEEcCCCc------cchhHHHHH----HHhcCCeEEEEeCC
Q psy1654 77 SGIIVGYDGRHNSKRFAELTASVFLNGG--VKRVFLVSRVC------PTPIIAYSI----RALNLALGIMITAS 138 (459)
Q Consensus 77 ~~VvVg~D~R~~s~~l~~a~~~gL~~~G--~~~V~~~~g~~------ptP~~~~av----~~~~~~gGi~ITaS 138 (459)
-+|+||.| ..+-.||+.+.+-|.+.| . +|.|+ |.- .-|-+...+ ..-.++-||.|-+|
T Consensus 30 MkIaIgsD--HaG~~LK~~i~~~L~~~G~g~-eV~D~-G~~s~~e~~DYPd~a~~vA~~V~~ge~d~GIliCGT 99 (184)
T 3sgw_A 30 LRLAIACD--DAGVSYKEALKAHLSDNPLVS-SITDV-GVTSTTDKTAYPHVAIQAAQLIKDGKVDRALMICGT 99 (184)
T ss_dssp EEEEEEEC--GGGHHHHHHHHHHHTTCTTEE-EEEEC-SCCSTTCCCCHHHHHHHHHHHHHTTSCSEEEEEESS
T ss_pred cEEEEEEC--chhHHHHHHHHHHHHhCCCCc-EEEEc-CCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCC
Confidence 36999999 788999999999999999 8 99999 754 234433333 33345667766554
No 24
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae}
Probab=63.83 E-value=14 Score=33.25 Aligned_cols=37 Identities=11% Similarity=0.024 Sum_probs=29.9
Q ss_pred CeEEEEeCCCCCh--HHHHHHHHHHHHhCCCcEEEEcCCCc
Q psy1654 77 SGIIVGYDGRHNS--KRFAELTASVFLNGGVKRVFLVSRVC 115 (459)
Q Consensus 77 ~~VvVg~D~R~~s--~~l~~a~~~gL~~~G~~~V~~~~g~~ 115 (459)
-+|+||.|....- ..+++.+.+-|.+.|. +|.|+ |.-
T Consensus 4 MkIaIgsDha~~lKn~ilk~~i~~~L~~~G~-eV~D~-G~~ 42 (216)
T 2ppw_A 4 MKIALINENSQASKNHIIYDSLKEATDKKGY-QLFNY-GMR 42 (216)
T ss_dssp CEEEECCCTTTGGGHHHHHHHHHHHHHHHTC-EEEEC-SCC
T ss_pred cEEEEEcCChHhhhhhhHHHHHHHHHHHCCC-EEEEe-CCC
Confidence 4799999988322 2467999999999999 99999 754
No 25
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=59.67 E-value=13 Score=33.41 Aligned_cols=33 Identities=21% Similarity=0.073 Sum_probs=28.3
Q ss_pred CeEEEEeCCCCChHHHHH-----HHHHHHHhCCCcEEEEcCCC
Q psy1654 77 SGIIVGYDGRHNSKRFAE-----LTASVFLNGGVKRVFLVSRV 114 (459)
Q Consensus 77 ~~VvVg~D~R~~s~~l~~-----a~~~gL~~~G~~~V~~~~g~ 114 (459)
=+|+||.|.. ..+|+ ++.+-|.+.|. +|.|+ |.
T Consensus 4 MkIaigsDha---~~lK~~~i~~~l~~~L~~~G~-eV~D~-G~ 41 (214)
T 3ono_A 4 MKIALMMENS---QAAKNAMVAGELNSVAGGLGH-DVFNV-GM 41 (214)
T ss_dssp CEEEECCCGG---GGGGHHHHHHHHHHHHHHTTC-EEEEC-SC
T ss_pred cEEEEECCCc---HHHHChhHHHHHHHHHHHCCC-EEEEc-CC
Confidence 3799999965 66666 99999999999 99999 83
No 26
>2ehp_A AQ_1627 protein; putative protein, NPPSFA, national project protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eiu_A
Probab=57.60 E-value=55 Score=25.61 Aligned_cols=62 Identities=13% Similarity=0.097 Sum_probs=43.7
Q ss_pred CcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcC
Q psy1654 39 GIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVS 112 (459)
Q Consensus 39 GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~ 112 (459)
|++|.+ -+|.+...|+|-|+++.+.-... ....+.+=-|..+ +.-|++-|++..|- +|+-..
T Consensus 13 G~pG~Y-----PLTaENL~R~GLALCtLl~iek~--~eeP~l~i~elNF----ltmalsVGFM~gGG-~V~vge 74 (126)
T 2ehp_A 13 GVPGNY-----PLTAENLFRIGLALCTLWILDKE--IEEPTLSIPETNF----VTLALSVGFMNAGG-SVNVGK 74 (126)
T ss_dssp ECTTST-----TSSHHHHHHHHHHHHHHHHHTTC--CSSCEEEESSCSH----HHHHHHHHHHHTTC-EEEESS
T ss_pred ccCCcc-----cccHHHHHHHHHHHHHHHHHHhh--hcCCeeeecccce----eeeeeeeeEeccCc-ceEeec
Confidence 455555 58999999999999998754211 0133555555544 55677899999999 998763
No 27
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=52.09 E-value=76 Score=31.37 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCC-hHHHHHHHHHHHHhCCCcEEE--EcCCCccchhHHHHHHHh-cCCe
Q psy1654 56 IIQTGQGILSCAEKHIPNFKESGIIVGYDGRHN-SKRFAELTASVFLNGGVKRVF--LVSRVCPTPIIAYSIRAL-NLAL 131 (459)
Q Consensus 56 v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~-s~~l~~a~~~gL~~~G~~~V~--~~~g~~ptP~~~~av~~~-~~~g 131 (459)
..++-..|-+|-..+ + +..+|+|-|++... .+.+++++++||.+.|+ ++. .+ -.+..+-++..+... .++
T Consensus 248 ~~~ii~~Y~~w~~~~-~--~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv-~~~~~~~-~d~~~~~~s~i~~~i~~~~- 321 (410)
T 4dik_A 248 PQRLLNHYVSVAKGD-P--KKGKVTVIYDSMYGFVENVMKKAIDSLKEKGF-TPVVYKF-SDEERPAISEILKDIPDSE- 321 (410)
T ss_dssp HHHHHHHHHHHHHTC-C--CTTEEEEEEECSSSHHHHHHHHHHHHHHHTTC-EEEEEEE-CSSCCCCHHHHHHHSTTCS-
T ss_pred HHHHHHHHHHhhccc-c--cccceeeEEecccChHHHHHHHHHHHHHhcCC-ceEEEEe-ccCCCCCHHHHHHHHHhCC-
Confidence 445555666654322 1 14579999999866 45799999999999999 764 33 234444455555543 444
Q ss_pred EEEEeC
Q psy1654 132 GIMITA 137 (459)
Q Consensus 132 Gi~ITa 137 (459)
|+.+-+
T Consensus 322 ~ivlGs 327 (410)
T 4dik_A 322 ALIFGV 327 (410)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 565533
No 28
>1fqj_C Retinal ROD rhodopsin-sensitive CGMP 3',5'- cyclic phosphodiesterase gamma-subunit...; RGS9, transducin, effector, pdegamma, G protein; HET: GDP; 2.02A {Bos taurus} SCOP: j.51.1.1
Probab=51.43 E-value=3.1 Score=26.31 Aligned_cols=9 Identities=22% Similarity=-0.027 Sum_probs=7.0
Q ss_pred CcccCCCCc
Q psy1654 447 GGFIDPKSK 455 (459)
Q Consensus 447 ~~~~~~~~~ 455 (459)
-+++|||++
T Consensus 19 ~tViCPWEA 27 (42)
T 1fqj_C 19 ITVICPWEA 27 (42)
T ss_dssp HHTTCGGGG
T ss_pred eEEEcchHh
Confidence 367899986
No 29
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=47.41 E-value=77 Score=26.52 Aligned_cols=35 Identities=31% Similarity=0.252 Sum_probs=29.0
Q ss_pred CCeEEEEeCCCC-ChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 76 ESGIIVGYDGRH-NSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 76 ~~~VvVg~D~R~-~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
.++|+|-|.+.. +.+.++++++.+|.+.|+ +|..+
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~-~v~~~ 39 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTGV-GVDVV 39 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTTC-EEEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCCC-eEEEE
Confidence 457888888874 688999999999999998 76544
No 30
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=46.99 E-value=38 Score=28.64 Aligned_cols=63 Identities=6% Similarity=-0.062 Sum_probs=36.9
Q ss_pred ceEEEeCCCC--CCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC-chhHHHHHHHHHhcCCcEEEEeCC
Q psy1654 220 VVITYSAMHG--VGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE-PSSLDLAVKTADQHGSTVILANDP 294 (459)
Q Consensus 220 ~kVvvD~~~G--~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~-~~~l~~~~~~v~~~~adlGia~D~ 294 (459)
.||++-|-|+ .....+.+.|++.|.++ +.... +. .++.+ +..-..+.+.|.+..+|+||.+.|
T Consensus 2 MkIaigsDhaG~~lK~~i~~~L~~~G~eV---~D~G~-----~~----~~~~dYpd~a~~va~~V~~g~~d~GIliCG 67 (149)
T 2vvr_A 2 KKIAFGCDHVGFILKHEIVAHLVERGVEV---IDKGT-----WS----SERTDYPHYASQVALAVAGGEVDGGILICG 67 (149)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTTCEE---EECCC-----CS----SSCCCHHHHHHHHHHHHHTTSSSEEEEEES
T ss_pred cEEEEEeCchhHHHHHHHHHHHHHCCCEE---EEeCC-----CC----CCCCChHHHHHHHHHHHHcCCCceEEEEeC
Confidence 5788888776 34667888899999873 22211 11 11222 333445566676666666665544
No 31
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=44.62 E-value=47 Score=28.64 Aligned_cols=66 Identities=11% Similarity=-0.014 Sum_probs=37.9
Q ss_pred CCceEEEeCCCCCC--HHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC-chhHHHHHHHHHhcCCcEEEEeCC
Q psy1654 218 SQVVITYSAMHGVG--YPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE-PSSLDLAVKTADQHGSTVILANDP 294 (459)
Q Consensus 218 ~~~kVvvD~~~G~~--~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~-~~~l~~~~~~v~~~~adlGia~D~ 294 (459)
...||++-|-|+-. ...+.+.|++.|.++ +..... ..++.+ +..-..+.+.|.+..+|+||.+.|
T Consensus 19 ~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV---~D~G~~---------~~~~~dYpd~a~~va~~V~~g~~d~GIliCG 86 (169)
T 3ph3_A 19 SHMKIGIGSDHGGYNLKREIADFLKKRGYEV---IDFGTH---------GNESVDYPDFGLKVAEAVKSGECDRGIVICG 86 (169)
T ss_dssp --CEEEEEECGGGHHHHHHHHHHHHHTTCEE---EECCCC---------SSSCCCHHHHHHHHHHHHHTTSSSEEEEEES
T ss_pred CCCEEEEEeCchHHHHHHHHHHHHHHCCCEE---EEcCCC---------CCCCCCHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 45899999998643 346677788899873 222111 112222 334455667777767776666554
Q ss_pred C
Q psy1654 295 D 295 (459)
Q Consensus 295 D 295 (459)
.
T Consensus 87 T 87 (169)
T 3ph3_A 87 T 87 (169)
T ss_dssp S
T ss_pred C
Confidence 3
No 32
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=43.87 E-value=84 Score=27.58 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=39.9
Q ss_pred CCeEEEEe---CCCCChHHHHHHHHHHHHhCCCcEEEEcCCCccchhHHHHHHHhcCCeEEEEeCC
Q psy1654 76 ESGIIVGY---DGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITAS 138 (459)
Q Consensus 76 ~~~VvVg~---D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP~~~~av~~~~~~gGi~ITaS 138 (459)
.++|+++. |.+.-+ +..++..|...|. +|++++-.+|...+.-+++..+.+ .|.++++
T Consensus 88 ~~~vll~~~~gd~H~iG---~~~va~~l~~~G~-~v~~LG~~vp~~~l~~~~~~~~~d-~v~lS~~ 148 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIG---KNLVAMMLESGGF-TVYNLGVDIEPGKFVEAVKKYQPD-IVGMSAL 148 (210)
T ss_dssp CCEEEEEEBTTCCCCHH---HHHHHHHHHHTTC-EEEECCSSBCHHHHHHHHHHHCCS-EEEEECC
T ss_pred CCEEEEEeCCCcccHHH---HHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHcCCC-EEEEecc
Confidence 45788886 554444 4567778899999 999993345555666677777765 5666654
No 33
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=42.13 E-value=56 Score=27.56 Aligned_cols=63 Identities=10% Similarity=-0.033 Sum_probs=35.3
Q ss_pred ceEEEeCCCCCC--HHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC-chhHHHHHHHHHhcCCcEEEEeCC
Q psy1654 220 VVITYSAMHGVG--YPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE-PSSLDLAVKTADQHGSTVILANDP 294 (459)
Q Consensus 220 ~kVvvD~~~G~~--~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~-~~~l~~~~~~v~~~~adlGia~D~ 294 (459)
.||++-|-|+-. ...+.+.|++.|.++ +..... ..++.+ +..-..+.+.|.+..+|+||.+.|
T Consensus 1 MkI~igsDhaG~~lK~~i~~~L~~~G~eV---~D~G~~---------~~~~~dYpd~a~~va~~V~~g~~d~GIliCG 66 (149)
T 3he8_A 1 MKIGIGSDHGGYNLKREIADFLKKRGYEV---IDFGTH---------GNESVDYPDFGLKVAEAVKSGECDRGIVICG 66 (149)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTTCEE---EECCCC---------SSSCCCHHHHHHHHHHHHHTTSSSEEEEEES
T ss_pred CEEEEEECchhHHHHHHHHHHHHHCCCEE---EEcCCC---------CCCCCCHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 367888877532 346667788889873 212111 112222 334455667777766766665544
No 34
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=41.71 E-value=48 Score=28.47 Aligned_cols=67 Identities=7% Similarity=0.140 Sum_probs=38.5
Q ss_pred CCceEEEeCCCCCC--HHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC-chhHHHHHHHHHhcCCcEEEEeCC
Q psy1654 218 SQVVITYSAMHGVG--YPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE-PSSLDLAVKTADQHGSTVILANDP 294 (459)
Q Consensus 218 ~~~kVvvD~~~G~~--~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~-~~~l~~~~~~v~~~~adlGia~D~ 294 (459)
...||++-|-|+-. ...+.+.|++.|.++ +...... .++.+ +..-..+.+.|.+..+|+||.+.|
T Consensus 20 ~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV---~D~G~~~---------~~~~dYPd~a~~va~~V~~g~~d~GIliCG 87 (166)
T 3s5p_A 20 GSMKVAFASDHGGRDLRMFLQQRASAHGYEV---MDLGTES---------DASVDYPDFAKIGCEAVTSGRADCCILVCG 87 (166)
T ss_dssp TTCEEEEEECGGGHHHHHHHHHHHHHTTCEE---EEEEC-----------------CHHHHHHHHHHHTTSCSEEEEEES
T ss_pred CceEEEEEECchHHHHHHHHHHHHHHCCCEE---EEcCCCC---------CCCCCHHHHHHHHHHHHHcCCCcEEEEEcC
Confidence 45799999998643 446677788899874 2222111 01111 234455667777777777766654
Q ss_pred CC
Q psy1654 295 DA 296 (459)
Q Consensus 295 Dg 296 (459)
.|
T Consensus 88 TG 89 (166)
T 3s5p_A 88 TG 89 (166)
T ss_dssp SS
T ss_pred Cc
Confidence 33
No 35
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=41.42 E-value=34 Score=27.61 Aligned_cols=54 Identities=6% Similarity=0.006 Sum_probs=41.6
Q ss_pred chhHHHHHHHHHhcCCcEEEEeCCCCCeE--EEEEecCCCCe-EEecCchhhHHHHHH
Q psy1654 271 PSSLDLAVKTADQHGSTVILANDPDADRL--AVAEKAKDGQW-KIFTGNELGALFGWW 325 (459)
Q Consensus 271 ~~~l~~~~~~v~~~~adlGia~D~DgDRl--~vvd~~~~G~~-~~~~~d~l~~L~a~~ 325 (459)
...++.+.+.+...+-++=|.+|.+.+|+ -|+|+ ++|+. +-|++++++-|.+.+
T Consensus 41 ~~av~~lN~~~~~~n~~L~F~vdee~~~~vVkVvD~-~TgEVIRqIPpEe~L~l~~~l 97 (117)
T 2hc5_A 41 AEMVGEMNKLLEPSQVHLKFELHDKLNEYYVKVIED-STNEVIREIPPKRWLDFYAAM 97 (117)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEET-TTTEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEEC-CCCcEEEeCChHHHHHHHHHH
Confidence 34456667777778889999999999994 56776 56753 678999999888775
No 36
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=40.36 E-value=38 Score=30.72 Aligned_cols=58 Identities=10% Similarity=0.031 Sum_probs=38.7
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCcc--------chhHHHH----HHHhcCCeEEEEeCC
Q psy1654 79 IIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCP--------TPIIAYS----IRALNLALGIMITAS 138 (459)
Q Consensus 79 VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~p--------tP~~~~a----v~~~~~~gGi~ITaS 138 (459)
|+++.|.-.....|++.+.+-|.+.|. +|.|+ |.-+ -|-+... +..-.++-||.|-+|
T Consensus 24 li~~~sqa~kN~~lKe~i~~~L~~~G~-eV~D~-G~~s~~d~~svDYPd~a~~vA~~V~~g~~d~GIliCGT 93 (231)
T 3c5y_A 24 LIIENSQAAKNAVVHEALTTVAEPLGH-KVFNY-GMYTAEDKASLTYVMNGLLAGILLNSGAADFVVTGCGT 93 (231)
T ss_dssp ECCCGGGGGGHHHHHHHHHHHHGGGTC-EEEEC-CCCSTTCSSCCCHHHHHHHHHHHHHHTSCSEEEEEESS
T ss_pred EEecCCHhhhHHHHHHHHHHHHHHCCC-EEEEe-CCCCCCCCCCCChHHHHHHHHHHHHcCCCCeEEEEcCC
Confidence 444555444455999999999999999 99999 7542 2333332 333356677777654
No 37
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=40.21 E-value=87 Score=27.02 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=42.2
Q ss_pred ceEEEeCCCC---------CCH------------HHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHH
Q psy1654 220 VVITYSAMHG---------VGY------------PYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAV 278 (459)
Q Consensus 220 ~kVvvD~~~G---------~~~------------~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~ 278 (459)
.+||+|++|| +.+ ..+.++|++.|+++ .++ +.. .| .|.. . ...|.+-.
T Consensus 2 m~IviDpGHGG~D~G~~~ga~g~~~Ekdi~l~ia~~l~~~L~~~G~~V-~v~-ltR-~d-~~~~------~-~~~L~~R~ 70 (180)
T 3qay_A 2 MKICITVGHSILKSGACTSADGVVNEYQYNKSLAPVLADTFRKEGHKV-DVI-ICP-EK-QFKT------K-NEEKSYKI 70 (180)
T ss_dssp CEEEEEECCCBCTTSCBCSCBSSSBHHHHHHHHHHHHHHHHHHTTCEE-EEE-CCC-SS-CCSS------T-THHHHHHH
T ss_pred eEEEEECCCCCCCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCCcc-eEE-ECC-CC-Cccc------c-ccCHHHHH
Confidence 6899999999 111 14567788889873 122 111 12 2211 1 23577777
Q ss_pred HHHHhcCCcEEEEeCCCCC
Q psy1654 279 KTADQHGSTVILANDPDAD 297 (459)
Q Consensus 279 ~~v~~~~adlGia~D~DgD 297 (459)
+++.+.++|+-+++=.|+-
T Consensus 71 ~~An~~~aDlfISIH~Na~ 89 (180)
T 3qay_A 71 PRVNSGGYDLLIELHLNAS 89 (180)
T ss_dssp HHHHHSCCSEEEEEEEECS
T ss_pred HHHHhcCCCEEEEeeeCCC
Confidence 8888899999999876664
No 38
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=40.15 E-value=62 Score=26.50 Aligned_cols=56 Identities=18% Similarity=0.349 Sum_probs=36.4
Q ss_pred CCeEEEEe---CCCCChHHHHHHHHHHHHhCCCcEEEEcCCC-ccchhHHHHHHHhcCCeEEEEeC
Q psy1654 76 ESGIIVGY---DGRHNSKRFAELTASVFLNGGVKRVFLVSRV-CPTPIIAYSIRALNLALGIMITA 137 (459)
Q Consensus 76 ~~~VvVg~---D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~-~ptP~~~~av~~~~~~gGi~ITa 137 (459)
.++|+++. |.+.-+. +.++..|...|. +|+++ |. +|..-+--++.+.+++ -|.+++
T Consensus 3 ~~~vvla~~~~d~HdiG~---~~v~~~l~~~G~-~Vi~l-G~~~p~e~~v~~a~~~~~d-~v~lS~ 62 (137)
T 1ccw_A 3 KKTIVLGVIGSDCHAVGN---KILDHAFTNAGF-NVVNI-GVLSPQELFIKAAIETKAD-AILVSS 62 (137)
T ss_dssp CCEEEEEEETTCCCCHHH---HHHHHHHHHTTC-EEEEE-EEEECHHHHHHHHHHHTCS-EEEEEE
T ss_pred CCEEEEEeCCCchhHHHH---HHHHHHHHHCCC-EEEEC-CCCCCHHHHHHHHHhcCCC-EEEEEe
Confidence 34666665 6555554 456678999999 99999 64 4444666666666765 344444
No 39
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=39.03 E-value=1.1e+02 Score=25.07 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=46.8
Q ss_pred cccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcC
Q psy1654 33 LKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVS 112 (459)
Q Consensus 33 ~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~ 112 (459)
+.+.+.|--|-=+. ..-||..+...++.++..+.+.+. +.-.|.| +..- .+ .++++.+|...|+ +|..+.
T Consensus 40 ~~~~SaG~~gfKg~--rk~tp~AA~~aa~~~~~~~~~~Gi--~~v~V~v-kG~G-~G---re~airaL~~~Gl-~I~~I~ 109 (129)
T 2vqe_K 40 ITWSSGGVIGYKGS--RKGTPYAAQLAALDAAKKAMAYGM--QSVDVIV-RGTG-AG---REQAIRALQASGL-QVKSIV 109 (129)
T ss_dssp EEECCTTTTTCCSG--GGGSHHHHHHHHHHHHHHHHTTTC--CEEEEEE-ESCC-TT---HHHHHHHHHTSSS-EEEECE
T ss_pred EEEEeccceeEcCC--CcCCHHHHHHHHHHHHHHHHHhCC--eEEEEEE-ECCC-CC---HHHHHHHHHHCCC-EEEEEE
Confidence 34444454443332 367899999999999998876432 1112333 2222 22 4577889999999 988775
Q ss_pred CCccch
Q psy1654 113 RVCPTP 118 (459)
Q Consensus 113 g~~ptP 118 (459)
..+|.|
T Consensus 110 DvTpiP 115 (129)
T 2vqe_K 110 DDTPVP 115 (129)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 566665
No 40
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=38.27 E-value=86 Score=26.46 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=38.0
Q ss_pred CCeEEEEe---CCCCChHHHHHHHHHHHHhCCCcEEEEcCCC-ccchhHHHHHHHhcCCeEEEEeC
Q psy1654 76 ESGIIVGY---DGRHNSKRFAELTASVFLNGGVKRVFLVSRV-CPTPIIAYSIRALNLALGIMITA 137 (459)
Q Consensus 76 ~~~VvVg~---D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~-~ptP~~~~av~~~~~~gGi~ITa 137 (459)
.++|+++. |.+.-+..+ ++..|...|. +|+++ |. +|..-+--++++.+++ -|.+++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~---va~~l~~~G~-eVi~l-G~~~p~e~lv~aa~~~~~d-iV~lS~ 77 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKV---VARALRDAGF-EVVYT-GLRQTPEQVAMAAVQEDVD-VIGVSI 77 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHH---HHHHHHHTTC-EEECC-CSBCCHHHHHHHHHHTTCS-EEEEEE
T ss_pred CCEEEEEeCCCCccHHHHHH---HHHHHHHCCC-EEEEC-CCCCCHHHHHHHHHhcCCC-EEEEEe
Confidence 45777776 777766544 5567889999 99999 64 5555666667777665 344444
No 41
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae}
Probab=37.66 E-value=59 Score=29.19 Aligned_cols=67 Identities=3% Similarity=-0.090 Sum_probs=37.4
Q ss_pred CceEEEeCCCCCCH------HHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC-chhHHHHHHHHHhcCCcEEEE
Q psy1654 219 QVVITYSAMHGVGY------PYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE-PSSLDLAVKTADQHGSTVILA 291 (459)
Q Consensus 219 ~~kVvvD~~~G~~~------~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~-~~~l~~~~~~v~~~~adlGia 291 (459)
++||++-+-|.... ..+.+.|++.|.++ +...+.... ..++.+ +..-..+.+.|.+..+|+||.
T Consensus 3 ~MkIaIgsDha~~lKn~ilk~~i~~~L~~~G~eV---~D~G~~s~~------d~~s~DYPd~a~~vA~~V~~g~~d~GIl 73 (216)
T 2ppw_A 3 AMKIALINENSQASKNHIIYDSLKEATDKKGYQL---FNYGMRGEE------GESQLTYVQNGLMAAILLNTKAVDFVVT 73 (216)
T ss_dssp CCEEEECCCTTTGGGHHHHHHHHHHHHHHHTCEE---EECSCCSCT------TCCCCCHHHHHHHHHHHHHTTSCSEEEE
T ss_pred CcEEEEEcCChHhhhhhhHHHHHHHHHHHCCCEE---EEeCCCCCC------CCCCCChHHHHHHHHHHHHcCCCCeEEE
Confidence 47899999888432 47778888999873 222111000 001112 333445566676666666665
Q ss_pred eCC
Q psy1654 292 NDP 294 (459)
Q Consensus 292 ~D~ 294 (459)
+.|
T Consensus 74 iCG 76 (216)
T 2ppw_A 74 GCG 76 (216)
T ss_dssp EES
T ss_pred EcC
Confidence 544
No 42
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=35.38 E-value=97 Score=28.33 Aligned_cols=57 Identities=11% Similarity=0.096 Sum_probs=39.4
Q ss_pred CCeEEEEe---CCCCChHHHHHHHHHHHHhCCCcEEEEcCC-CccchhHHHHHHHhcCCeEEEEeCC
Q psy1654 76 ESGIIVGY---DGRHNSKRFAELTASVFLNGGVKRVFLVSR-VCPTPIIAYSIRALNLALGIMITAS 138 (459)
Q Consensus 76 ~~~VvVg~---D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g-~~ptP~~~~av~~~~~~gGi~ITaS 138 (459)
+++|+++. |.+.-+ ++.++..|...|. +|+++ | .+|..-+--++...+.+ .|.++++
T Consensus 123 ~~~vlla~~~gd~HdiG---~~iva~~L~~~G~-~Vi~L-G~~vp~e~l~~~~~~~~~d-~V~lS~l 183 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIG---KNIVTALLRANGY-NVVDL-GRDVPAEEVLAAVQKEKPI-MLTGTAL 183 (258)
T ss_dssp SCEEEEEECTTCCCCHH---HHHHHHHHHHTTC-EEEEE-EEECCSHHHHHHHHHHCCS-EEEEECC
T ss_pred CCeEEEEeCCCCccHHH---HHHHHHHHHHCCC-EEEEC-CCCCCHHHHHHHHHHcCCC-EEEEEee
Confidence 45788876 444444 4556777999999 99999 6 45555666677777765 5666664
No 43
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=34.96 E-value=1.1e+02 Score=21.15 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCc
Q psy1654 272 SSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGN 316 (459)
Q Consensus 272 ~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d 316 (459)
.+.++........+.+|-+-.|.+-+++.++-+..+|.+-+|.|+
T Consensus 13 msveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~yGlI~p~ 57 (57)
T 3k2t_A 13 MDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGKYGLIETN 57 (57)
T ss_dssp BCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSCEEEECC-
T ss_pred CCHHHHHHHHHhCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEeeC
Confidence 445566666677789999999999999999998777887777763
No 44
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=32.51 E-value=1.4e+02 Score=21.38 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCc
Q psy1654 272 SSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGN 316 (459)
Q Consensus 272 ~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d 316 (459)
.+.++........+.||-+-.|.+-+++.++.+..+|.+-+|.+.
T Consensus 13 MsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~yGlI~p~ 57 (65)
T 3ka5_A 13 MSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGNYGLIEPE 57 (65)
T ss_dssp BCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSCEEEEECC
T ss_pred CCHHHHHHHHHhCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC
Confidence 445666666677889999999999999999998778888888775
No 45
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=32.36 E-value=1.3e+02 Score=24.91 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=25.3
Q ss_pred EEEEeCCC-CChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 79 IIVGYDGR-HNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 79 VvVg~D~R-~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
|+|-|.+. -+++.++++++.+|.+.|+ +|-.+
T Consensus 3 v~IvY~S~tGnT~~~A~~ia~~l~~~g~-~v~~~ 35 (161)
T 3hly_A 3 VLIGYLSDYGYSDRLSQAIGRGLVKTGV-AVEMV 35 (161)
T ss_dssp EEEEECTTSTTHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEEEECCChHHHHHHHHHHHHHHhCCC-eEEEE
Confidence 56667665 5788999999999999998 76433
No 46
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=30.69 E-value=92 Score=26.40 Aligned_cols=67 Identities=9% Similarity=-0.032 Sum_probs=38.8
Q ss_pred CCceEEEeCCCCCC--HHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC-chhHHHHHHHHHhcCCcEEEEeCC
Q psy1654 218 SQVVITYSAMHGVG--YPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE-PSSLDLAVKTADQHGSTVILANDP 294 (459)
Q Consensus 218 ~~~kVvvD~~~G~~--~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~-~~~l~~~~~~v~~~~adlGia~D~ 294 (459)
...||++-|-|+-. ...+.+.|++.|.++ + ...++ . .++.+ +..-..+.+.|.+..+|+||.+.|
T Consensus 11 ~~~~i~igsDhaG~~lK~~i~~~L~~~G~eV---~--D~G~~---~----~~~~dYpd~a~~va~~V~~g~~d~GIliCG 78 (155)
T 1o1x_A 11 HHVKIAIASDHAAFELKEKVKNYLLGKGIEV---E--DHGTY---S----EESVDYPDYAKKVVQSILSNEADFGILLCG 78 (155)
T ss_dssp CCCEEEEEECSTTHHHHHHHHHHHHHTTCEE---E--ECCCC---S----SSCCCHHHHHHHHHHHHHTTSCSEEEEEES
T ss_pred cceeEEEeeCchHHHHHHHHHHHHHHCCCEE---E--EeCCC---C----CCCCChHHHHHHHHHHHHcCCCceEEEEcC
Confidence 45789999887543 346677788889873 2 22111 1 11222 334455667777777777766655
Q ss_pred CC
Q psy1654 295 DA 296 (459)
Q Consensus 295 Dg 296 (459)
.|
T Consensus 79 TG 80 (155)
T 1o1x_A 79 TG 80 (155)
T ss_dssp SS
T ss_pred Cc
Confidence 33
No 47
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=30.21 E-value=1.1e+02 Score=26.52 Aligned_cols=63 Identities=10% Similarity=-0.022 Sum_probs=37.4
Q ss_pred ceEEEeCCCCC--CHHHHHHHHHH--cCCCCeEEeccccccCCCCCCCCCCCCCC-chhHHHHHHHHHhcCCcEEEEeCC
Q psy1654 220 VVITYSAMHGV--GYPYVNQLFKL--FKFKPLVLVDAQCSPDPEFPTVRFPNPEE-PSSLDLAVKTADQHGSTVILANDP 294 (459)
Q Consensus 220 ~kVvvD~~~G~--~~~~~~~ll~~--LG~~~~~~v~~~~~pd~~f~~~~~p~p~~-~~~l~~~~~~v~~~~adlGia~D~ 294 (459)
.||++-|-|+- -...+.+.|++ .|.++ +.... + ..++.+ +..-..+.+.|.+..+|+||.+.|
T Consensus 23 MkIaIgsDhaG~~lK~~i~~~L~~~~~G~eV---~D~G~--~-------s~~s~DYPd~a~~vA~~V~~g~~d~GIliCG 90 (179)
T 3k7p_A 23 RRVAIGTDHPAFAIHENLILYVKEAGDEFVP---VYCGP--K-------TAESVDYPDFASRVAEMVARKEVEFGVLAAG 90 (179)
T ss_dssp EEEEEEECTGGGGGHHHHHHHHHHTCTTEEE---EECSC--S-------SSSCCCHHHHHHHHHHHHHTTSSSEEEEEES
T ss_pred eEEEEEECchHHHHHHHHHHHHHhcCCCCeE---EEcCC--C-------CCCCCCHHHHHHHHHHHHHcCCCCEEEEEcc
Confidence 68999998864 35577778888 89863 22211 1 112222 334455667777766766666544
No 48
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=27.91 E-value=1.8e+02 Score=25.77 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=38.1
Q ss_pred CCeEEEEe---CCCCChHHHHHHHHHHHHhCCCcEEEEcCCC-ccchhHHHHHHHhcCCeEEEE
Q psy1654 76 ESGIIVGY---DGRHNSKRFAELTASVFLNGGVKRVFLVSRV-CPTPIIAYSIRALNLALGIMI 135 (459)
Q Consensus 76 ~~~VvVg~---D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~-~ptP~~~~av~~~~~~gGi~I 135 (459)
.++|+++. |.+.-+..+ ++..|..+|. +|+++ |. +|..-+--++.+.+.+ -|.+
T Consensus 92 ~~~vll~~v~gd~HdiG~~i---v~~~l~~~G~-~Vi~L-G~~vp~e~iv~~~~~~~~d-~v~l 149 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRL---VTTMLGANGF-QIVDL-GVDVLNENVVEEAAKHKGE-KVLL 149 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHH---HHHHHHHTSC-EEEEC-CSSCCHHHHHHHHHHTTTS-CEEE
T ss_pred CCeEEEEeCCCChhHHHHHH---HHHHHHHCCC-eEEEc-CCCCCHHHHHHHHHHcCCC-EEEE
Confidence 46788886 777666554 6677899999 99999 64 5555565566776665 4555
No 49
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=27.49 E-value=1.5e+02 Score=21.16 Aligned_cols=46 Identities=13% Similarity=0.269 Sum_probs=37.3
Q ss_pred chhHHHHHHHHHhcCCcEEEEeCCCCCeEEEEEecCCCCeEEecCc
Q psy1654 271 PSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGN 316 (459)
Q Consensus 271 ~~~l~~~~~~v~~~~adlGia~D~DgDRl~vvd~~~~G~~~~~~~d 316 (459)
+.+.++......-.+.||-+-.|.+-+++.++.+..+|.+-+|.|.
T Consensus 13 pMsveEAv~qMel~gh~F~vF~n~etg~~nVVYRR~dG~yGlI~p~ 58 (66)
T 3lyv_A 13 PMDVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGNLGLIEAK 58 (66)
T ss_dssp EECHHHHHHHHHTTTCSEEEEEETTTCSEEEEEECTTSSEEEEEEC
T ss_pred CCCHHHHHHHHHcCCCcEEEEEeCCCCCEEEEEEECCCCEEEEEeC
Confidence 3456666667778899999999999999999998777887777765
No 50
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=26.16 E-value=89 Score=28.99 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=34.5
Q ss_pred eEEEeCCCCC----------CH-----HHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHHHHHH
Q psy1654 221 VITYSAMHGV----------GY-----PYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTAD 282 (459)
Q Consensus 221 kVvvD~~~G~----------~~-----~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v~ 282 (459)
.|+|||.|+. ++ ..+....-.+|++= ++++.|..||..... .+....+..+..+.+.++
T Consensus 178 pVivD~sH~~q~p~G~s~hs~g~~~~~~~ia~aava~Ga~G-~mIE~H~~pd~al~D--g~qsl~p~~l~~l~~~i~ 251 (267)
T 2nwr_A 178 KVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDG-VFMETHPEPEKALSD--ASTQLPLSQLEGIIEAIL 251 (267)
T ss_dssp EEEEETTGGGCCTTC------CCGGGHHHHHHHHHHHCCSE-EEEEEESCGGGCSSC--TTTCEEGGGHHHHHHHHH
T ss_pred CEEEcCCcccccCCCcCcCCCCchhHHHHHHHHHHHcCCCE-EEEEecCCcccCCCc--cccCCCHHHHHHHHHHHH
Confidence 8999999994 33 22222333688863 456668777776653 344433455655554444
No 51
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=25.79 E-value=2.5e+02 Score=23.52 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=46.5
Q ss_pred CCHHHHHHHHhccchhcCCHHHHHHhhcCCcccCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEE
Q psy1654 3 SNEDVVREMMKKDDAFFKNKEAMSDLFLKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVG 82 (459)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fgt~GiRG~~~~~~~~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg 82 (459)
|.+++..++.... .+.|++.+. .++++.+.+++..+.. . ++-+++|
T Consensus 1 ~~~~i~~~~~~~~------~~~l~~t~~-------------------~l~~~~l~~~~~~i~~----a-----~~I~i~G 46 (187)
T 3sho_A 1 DRQQLPVQVFTND------IENLNQTLN-------------------QTQPEAIEAAVEAICR----A-----DHVIVVG 46 (187)
T ss_dssp CGGGHHHHHHHHH------HHHHHHHHH-------------------TCCHHHHHHHHHHHHH----C-----SEEEEEC
T ss_pred ChHHHHHHHHHHH------HHHHHHHHH-------------------hCCHHHHHHHHHHHHh----C-----CEEEEEe
Confidence 3456666666666 666666543 4566666665555432 1 3345555
Q ss_pred eCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 83 YDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 83 ~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
. -+|..++..+..-|...|. +|..+
T Consensus 47 ~---G~S~~~a~~~~~~l~~~g~-~~~~~ 71 (187)
T 3sho_A 47 M---GFSAAVAVFLGHGLNSLGI-RTTVL 71 (187)
T ss_dssp C---GGGHHHHHHHHHHHHHTTC-CEEEE
T ss_pred c---CchHHHHHHHHHHHHhcCC-CEEEe
Confidence 4 3577899999999999999 98877
No 52
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=25.60 E-value=77 Score=30.84 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=31.0
Q ss_pred CCCCe--EEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 74 FKESG--IIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 74 ~~~~~--VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
+++.+ |++..|-++++...+++++.++...|+ +|...
T Consensus 188 l~glkvvva~vGDl~~~~nrva~Sl~~~~~~~G~-~v~~~ 226 (359)
T 1zq6_A 188 LRGKKYVLTWTYHPKPLNTAVANSALTIATRMGM-DVTLL 226 (359)
T ss_dssp CTTCEEEEEECCCSSCCCSHHHHHHHHHHHHTTC-EEEEE
T ss_pred ccCCeeEEEEEecccccccchHHHHHHHHHHcCC-EEEEE
Confidence 45788 667788887767888999999999999 99887
No 53
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=25.01 E-value=4.1e+02 Score=25.17 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCC-ChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 54 VVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRH-NSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 54 ~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~-~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
+.+.++-..+-.++.... ..+|+|.+-+.. +.+.++++++.++...|+ +|-..
T Consensus 234 ~~~~~~~~~~~~~~~~~~----~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~-~v~~~ 287 (402)
T 1e5d_A 234 DQCTFAVQKYVEYAEQKP----TNKVVIFYDSMWHSTEKMARVLAESFRDEGC-TVKLM 287 (402)
T ss_dssp HHHHHHHHHHHHHHHCCC----CSEEEEEECCSSSHHHHHHHHHHHHHHHTTC-EEEEE
T ss_pred CCHHHHHHHHHHHhcCCC----CCcEEEEEECCChhHHHHHHHHHHHHHhCCC-eEEEE
Confidence 345566666666664421 356777777664 467899999999999997 66443
No 54
>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A*
Probab=24.33 E-value=1.1e+02 Score=26.59 Aligned_cols=67 Identities=6% Similarity=-0.096 Sum_probs=36.7
Q ss_pred CCceEEEeCCCCCC--HHHHHHHHHHcC--CCCeEEeccccccCCCCCCCCCCCCCC-chhHHHHHHHHHhcCCcEEEEe
Q psy1654 218 SQVVITYSAMHGVG--YPYVNQLFKLFK--FKPLVLVDAQCSPDPEFPTVRFPNPEE-PSSLDLAVKTADQHGSTVILAN 292 (459)
Q Consensus 218 ~~~kVvvD~~~G~~--~~~~~~ll~~LG--~~~~~~v~~~~~pd~~f~~~~~p~p~~-~~~l~~~~~~v~~~~adlGia~ 292 (459)
.+.||++-|-|+-. ...+.+.|++.| .++ +......+ .++.+ +..-..+.+.|.+..+|+||.+
T Consensus 28 ~~MkIaIgsDHaG~~LK~~i~~~L~~~G~g~eV---~D~G~~s~--------~e~~DYPd~a~~vA~~V~~ge~d~GIli 96 (184)
T 3sgw_A 28 PPLRLAIACDDAGVSYKEALKAHLSDNPLVSSI---TDVGVTST--------TDKTAYPHVAIQAAQLIKDGKVDRALMI 96 (184)
T ss_dssp CCEEEEEEECGGGHHHHHHHHHHHTTCTTEEEE---EECSCCST--------TCCCCHHHHHHHHHHHHHTTSCSEEEEE
T ss_pred CCcEEEEEECchhHHHHHHHHHHHHhCCCCcEE---EEcCCCCC--------CCCCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 45899999988642 335566677777 452 32221100 11222 3334556677777677666665
Q ss_pred CCC
Q psy1654 293 DPD 295 (459)
Q Consensus 293 D~D 295 (459)
.|.
T Consensus 97 CGT 99 (184)
T 3sgw_A 97 CGT 99 (184)
T ss_dssp ESS
T ss_pred cCC
Confidence 543
No 55
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=23.01 E-value=1.5e+02 Score=25.34 Aligned_cols=63 Identities=11% Similarity=0.070 Sum_probs=36.3
Q ss_pred ceEEEeCCCCC--CHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCC-CCC-chhHHHHHHHHHhcCCcEEEEeCC
Q psy1654 220 VVITYSAMHGV--GYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPN-PEE-PSSLDLAVKTADQHGSTVILANDP 294 (459)
Q Consensus 220 ~kVvvD~~~G~--~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~-p~~-~~~l~~~~~~v~~~~adlGia~D~ 294 (459)
.||++-|-|+- ....+.+.|++.|.++ +.... +. .+ +.+ +..-..+.+.|.+..+|+||.+.|
T Consensus 4 MkIaigsDhaG~~lK~~i~~~L~~~G~eV---~D~G~-----~~----~~~~~dYpd~a~~va~~V~~g~~d~GIliCG 70 (162)
T 2vvp_A 4 MRVYLGADHAGYELKQRIIEHLKQTGHEP---IDCGA-----LR----YDADDDYPAFCIAAATRTVADPGSLGIVLGG 70 (162)
T ss_dssp CEEEEEECHHHHHHHHHHHHHHHHTTCEE---EECSC-----CS----CCTTCCHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred CEEEEEeCchhHHHHHHHHHHHHHCCCEE---EEeCC-----CC----CCCCCChHHHHHHHHHHHHcCCCceEEEEeC
Confidence 57888887752 2456777888899873 22211 11 11 112 334455667777777777766544
No 56
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=22.75 E-value=2.3e+02 Score=23.54 Aligned_cols=83 Identities=10% Similarity=0.228 Sum_probs=54.5
Q ss_pred ceEEEeCCCCCCHHHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHHHHHHhcCCcEEEE-----eCC
Q psy1654 220 VVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQHGSTVILA-----NDP 294 (459)
Q Consensus 220 ~kVvvD~~~G~~~~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v~~~~adlGia-----~D~ 294 (459)
-||||-..|+---.++.+++.+++-.....+.+ +.++ .+-++..++.+..-.+...+||+.+| .=|
T Consensus 37 kkIvV~t~N~kKf~vi~~il~~~~~~~i~~l~i----~Tn~-----aDlTRmPA~~K~LmAvD~~dADlvIARGRLGvPG 107 (156)
T 3brc_A 37 RRTVVPNWNAEKVDAINDVLRSFNLREAEHLQF----NTNW-----ADLTRMPAVTKALMALDISGADLVIARGRLGVPG 107 (156)
T ss_dssp SCEEECCCCHHHHHHHHHHHHHTTCCCCEECCS----CCGG-----GGGSSSHHHHHHHHHHHHHCCSEEEEEEECSSTT
T ss_pred CeEEEecCCchHhHHHHHHHHHhcCCccceeec----cCcc-----hhcccCcHHHHHHHheeccCCcEEEEcccccCCC
Confidence 368888889888889999999986433223221 1111 22233335655556677889999988 457
Q ss_pred CCCeEEEEEecCCCCeEEecC
Q psy1654 295 DADRLAVAEKAKDGQWKIFTG 315 (459)
Q Consensus 295 DgDRl~vvd~~~~G~~~~~~~ 315 (459)
.|.=+.+.| ++| +++++
T Consensus 108 SGSmLvimD--~kG--RiLta 124 (156)
T 3brc_A 108 SGSLLVIMD--SRG--RLLSA 124 (156)
T ss_dssp SCEEEEEEE--TTS--CEEEE
T ss_pred CccEEEEEc--CCC--cEEee
Confidence 777777887 488 66664
No 57
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=22.58 E-value=1.3e+02 Score=28.19 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=37.1
Q ss_pred CceEEEeCCCCC----------CH-----HHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHHHHHH
Q psy1654 219 QVVITYSAMHGV----------GY-----PYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTAD 282 (459)
Q Consensus 219 ~~kVvvD~~~G~----------~~-----~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v~ 282 (459)
++.|++|+.|.+ ++ ..++..--.+|++- ++++.|.+||...+. .|+.-.+..++.+.+.++
T Consensus 195 ~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~g-l~IE~H~~pd~al~D--~~~sl~p~el~~lv~~i~ 270 (285)
T 3sz8_A 195 GCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAG-LFLEAHPDPDRARCD--GPSALPLHQLEGLLSQMK 270 (285)
T ss_dssp SCCEEEETTTTCC---------------HHHHHHHHHHHCCSE-EEEEEESCGGGCSCS--SCCCEEGGGHHHHHHHHH
T ss_pred CCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCE-EEEEeccChhccCCc--hhhccCHHHHHHHHHHHH
Confidence 478999999984 33 33444455789983 345558888877763 454444455555544443
No 58
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=22.38 E-value=1.2e+02 Score=29.62 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=30.9
Q ss_pred HhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 68 EKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 68 ~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
.+.++.+++.+|++-.|.+. . .+++++.++...|+ +|...
T Consensus 172 ~E~~G~l~glkva~vGD~~n--n-va~Sl~~~~~~lG~-~v~~~ 211 (365)
T 4amu_A 172 KEKFGNLKNKKIVFIGDYKN--N-VGVSTMIGAAFNGM-HVVMC 211 (365)
T ss_dssp HHHHSSCTTCEEEEESSTTS--H-HHHHHHHHHHHTTC-EEEEE
T ss_pred HHHhCCCCCCEEEEECCCCc--c-hHHHHHHHHHHcCC-EEEEE
Confidence 34443445778888889874 2 68999999999999 99887
No 59
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=22.38 E-value=89 Score=30.12 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=32.3
Q ss_pred HhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc--CCCccchh
Q psy1654 68 EKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV--SRVCPTPI 119 (459)
Q Consensus 68 ~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~--~g~~ptP~ 119 (459)
.+.++.+++.+|++-.|. ++ .+++++.++...|+ +|... ++..|.|.
T Consensus 171 ~E~~G~l~glkva~vGD~---~n-va~Sl~~~~~~~G~-~v~~~~P~~~~~~~~ 219 (340)
T 4ep1_A 171 YEETNTFKGIKLAYVGDG---NN-VCHSLLLASAKVGM-HMTVATPVGYRPNEE 219 (340)
T ss_dssp HHHHSCCTTCEEEEESCC---CH-HHHHHHHHHHHHTC-EEEEECCTTCCCCHH
T ss_pred HHHhCCCCCCEEEEECCC---ch-hHHHHHHHHHHcCC-EEEEECCcccCCCHH
Confidence 344444557788888886 33 78888888888899 99877 24455553
No 60
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=21.79 E-value=1.4e+02 Score=26.62 Aligned_cols=66 Identities=5% Similarity=-0.077 Sum_probs=36.3
Q ss_pred CceEEEeCCCCCC-HH-----HHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCC-chhHHHHHHHHHhcCCcEEEE
Q psy1654 219 QVVITYSAMHGVG-YP-----YVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEE-PSSLDLAVKTADQHGSTVILA 291 (459)
Q Consensus 219 ~~kVvvD~~~G~~-~~-----~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~-~~~l~~~~~~v~~~~adlGia 291 (459)
.+||++-|-|+.. .. .+.+.|++.|.++ +.....++. .++.+ +..-..+.+.|.+..+|+||.
T Consensus 3 ~MkIaigsDha~~lK~~~i~~~l~~~L~~~G~eV---~D~G~~~~~-------~~~~dYpd~a~~vA~~V~~g~~d~GIl 72 (214)
T 3ono_A 3 AMKIALMMENSQAAKNAMVAGELNSVAGGLGHDV---FNVGMTDEN-------DHHLTYIHLGIMASILLNSKAVDFVVT 72 (214)
T ss_dssp CCEEEECCCGGGGGGHHHHHHHHHHHHHHTTCEE---EECSCSSTT-------SSCCCHHHHHHHHHHHHHTTSCSEEEE
T ss_pred ccEEEEECCCcHHHHChhHHHHHHHHHHHCCCEE---EEcCCCCCC-------CCCCCHHHHHHHHHHHHHcCCCCEEEE
Confidence 4789999998843 23 4566788889873 211110111 12222 333445566677666666665
Q ss_pred eCC
Q psy1654 292 NDP 294 (459)
Q Consensus 292 ~D~ 294 (459)
+.|
T Consensus 73 iCG 75 (214)
T 3ono_A 73 GCG 75 (214)
T ss_dssp EES
T ss_pred EcC
Confidence 544
No 61
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=21.46 E-value=3.8e+02 Score=22.87 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=51.2
Q ss_pred eEEEEeC------CCCChHHHHHHHHHHHHhCCCcEEEEcCCCccchhHHHHHHHh-------cCCeEEEEeCCCCCCCC
Q psy1654 78 GIIVGYD------GRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRAL-------NLALGIMITASHNPKED 144 (459)
Q Consensus 78 ~VvVg~D------~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP~~~~av~~~-------~~~gGi~ITaShnp~~~ 144 (459)
-++|+.. .|..+..=++++...|...|. +|... .-.+.-.+.-+++++ +.+..+.+-+||--..+
T Consensus 46 ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF-~V~~~-~dlt~~em~~~l~~f~~~~d~~~~d~~v~~~lsHG~~g~ 123 (178)
T 2h54_A 46 ALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGY-SVDVK-KNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREG 123 (178)
T ss_dssp EEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTC-EEEEE-ESCCHHHHHHHHHHHHTCGGGGGCSCEEEEEESCBCSSC
T ss_pred EEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCC-EEEEe-cCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEecCCCCCe
Confidence 4778877 688899999999999999999 99877 455566666555443 34667888889954321
Q ss_pred CceeeEcCCC
Q psy1654 145 NGYKLYDSKG 154 (459)
Q Consensus 145 nGiK~~~~~G 154 (459)
++..+|
T Consensus 124 ----i~g~D~ 129 (178)
T 2h54_A 124 ----ICGKKH 129 (178)
T ss_dssp ----EECTTC
T ss_pred ----EEeecC
Confidence 555665
No 62
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=20.87 E-value=2.3e+02 Score=29.41 Aligned_cols=59 Identities=10% Similarity=0.138 Sum_probs=41.1
Q ss_pred CCeEEEEe---CCCCChHHHHHHHHHHHHhCCCcEEEEcCCCccchhHHHHHHHhcCCeEEEEeCCC
Q psy1654 76 ESGIIVGY---DGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASH 139 (459)
Q Consensus 76 ~~~VvVg~---D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP~~~~av~~~~~~gGi~ITaSh 139 (459)
.++|+++. |.+.-+ ++.++..|..+|. +|++++-.+|..-+--++...+.+ .|.++++.
T Consensus 98 ~~kVLlatv~GD~HdiG---~~iva~~L~~~G~-eVi~LG~~vP~e~iv~aa~~~~~d-iVgLS~l~ 159 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIG---KNIVGVVLQCNNY-EIVDLGVMVPAEKILRTAKEVNAD-LIGLSGLI 159 (579)
T ss_dssp SCEEEEEEBTTCCCCHH---HHHHHHHHHTTTC-EEEECCSSBCHHHHHHHHHHHTCS-EEEEECCS
T ss_pred CCeEEEEECCCCCchHH---HHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHcCCC-EEEEEecC
Confidence 45788886 666555 4556778999999 999993345555666677777766 56666653
No 63
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=20.80 E-value=1.8e+02 Score=26.74 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=37.9
Q ss_pred ceEEEeCCCCCCH-----HHHHHHHHHcCCCCeEEeccccccCCCCCCCCCCCCCCchhHHHHHHHHHh
Q psy1654 220 VVITYSAMHGVGY-----PYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQ 283 (459)
Q Consensus 220 ~kVvvD~~~G~~~-----~~~~~ll~~LG~~~~~~v~~~~~pd~~f~~~~~p~p~~~~~l~~~~~~v~~ 283 (459)
+.|++||.|+.+. .+.. ..-.+|++= ++++.|..||...+ +.+....+..+..+.+.+++
T Consensus 193 ~pVi~d~sH~~g~~~~v~~~~~-aAva~Ga~G-l~iE~H~~~d~al~--D~~~sl~p~~~~~l~~~i~~ 257 (262)
T 1zco_A 193 LPIIVDPSHPAGRRSLVIPLAK-AAYAIGADG-IMVEVHPEPEKALS--DSQQQLTFDDFLQLLKELEA 257 (262)
T ss_dssp SCEEECSSTTTCSGGGHHHHHH-HHHHTTCSE-EEEEBCSSGGGCSS--CTTTCBCHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCccchHHHHHH-HHHHcCCCE-EEEEecCCccccCC--hhhcCCCHHHHHHHHHHHHH
Confidence 5699999998875 3322 234689873 45666877777665 33555445566666555554
No 64
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=20.76 E-value=1.9e+02 Score=23.08 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEcCCCccch
Q psy1654 50 QMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTP 118 (459)
Q Consensus 50 ~ln~~~v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~~g~~ptP 118 (459)
.-||..+...++..+..+.+.+. +.-.|.| +..-+. .++++.+|...|+ +|..+...+|.|
T Consensus 45 k~tp~AA~~aa~~~~~~~~~~Gi--~~v~v~v-kG~G~G----r~~airaL~~~Gl-~I~~I~DvTpip 105 (117)
T 3r8n_K 45 KSTPFAAQVAAERCADAVKEYGI--KNLEVMV-KGPGPG----RESTIRALNAAGF-RITNITDVTPIP 105 (117)
T ss_dssp GSSHHHHHHHHHHHHHHHTTSCC--CEEEEEE-ECSSSS----TTHHHHHHHHTTC-EEEEEEECCCCC
T ss_pred cCCHHHHHHHHHHHHHHHHHhCC--cEEEEEE-eCCCcc----HHHHHHHHHhCCC-EEEEEEEeCCCC
Confidence 66899888888888887765431 1113444 222222 4456777888999 887775566666
No 65
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=20.72 E-value=1.5e+02 Score=28.56 Aligned_cols=65 Identities=6% Similarity=-0.014 Sum_probs=40.8
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHH--HHhhC--C-CCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc--CCCc
Q psy1654 43 PMGVGFSQMNDVVIIQTGQGILSC--AEKHI--P-NFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV--SRVC 115 (459)
Q Consensus 43 ~~~~~~~~ln~~~v~~ig~A~g~~--l~~~~--~-~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~--~g~~ 115 (459)
++|.+...-.|- |+++.. +.+.+ + .+++.+|++-.|. + ..+++++.++...|+ +|... ++..
T Consensus 143 VINag~~~~HPt------QaLaDl~Ti~e~~~~G~~l~glkva~vGD~---~-rva~Sl~~~~~~~G~-~v~~~~P~~~~ 211 (339)
T 4a8t_A 143 VINGMSDYNHPT------QELGDLCTMVEHLPEGKKLEDCKVVFVGDA---T-QVCFSLGLITTKMGM-NFVHFGPEGFQ 211 (339)
T ss_dssp EEECCCSSCCHH------HHHHHHHHHHHTCCTTCCGGGCEEEEESSC---C-HHHHHHHHHHHHTTC-EEEEECCTTSS
T ss_pred EEECCCCCcCcH------HHHHHHHHHHHHhhcCCCCCCCEEEEECCC---c-hhHHHHHHHHHHcCC-EEEEECCcccC
Confidence 455443344452 344442 34444 3 4557788888897 3 457888888999999 99877 2455
Q ss_pred cch
Q psy1654 116 PTP 118 (459)
Q Consensus 116 ptP 118 (459)
|.|
T Consensus 212 ~~~ 214 (339)
T 4a8t_A 212 LNE 214 (339)
T ss_dssp CCH
T ss_pred CCH
Confidence 555
No 66
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=20.52 E-value=1.5e+02 Score=28.33 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=30.0
Q ss_pred hhCCCCCCCeEEEEeCCCCChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 69 KHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 69 ~~~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
+.++.+++.+|++-.|.+ + ..+++++.++...|+ +|...
T Consensus 160 e~~g~l~gl~va~vGD~~--~-rva~Sl~~~~~~~G~-~v~~~ 198 (325)
T 1vlv_A 160 ENFGRLKGVKVVFMGDTR--N-NVATSLMIACAKMGM-NFVAC 198 (325)
T ss_dssp HHHSCSTTCEEEEESCTT--S-HHHHHHHHHHHHTTC-EEEEE
T ss_pred HHhCCcCCcEEEEECCCC--c-CcHHHHHHHHHHCCC-EEEEE
Confidence 333445577899999953 3 577999999999999 99887
No 67
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=20.31 E-value=2.9e+02 Score=24.97 Aligned_cols=33 Identities=21% Similarity=0.051 Sum_probs=24.6
Q ss_pred eEEEEeCCC--CChHHHHHHHHHHHHhCCCcEEEEc
Q psy1654 78 GIIVGYDGR--HNSKRFAELTASVFLNGGVKRVFLV 111 (459)
Q Consensus 78 ~VvVg~D~R--~~s~~l~~a~~~gL~~~G~~~V~~~ 111 (459)
-++|..=.| ..+..+++++++++...|+ +|..+
T Consensus 37 IliI~GS~r~~s~t~~La~~~~~~l~~~g~-eve~i 71 (247)
T 2q62_A 37 ILILYGSLRTVSYSRLLAEEARRLLEFFGA-EVKVF 71 (247)
T ss_dssp EEEEECCCCSSCHHHHHHHHHHHHHHHTTC-EEEEC
T ss_pred EEEEEccCCCCCHHHHHHHHHHHHHhhCCC-EEEEE
Confidence 345555555 4577999999999999998 87655
No 68
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=20.30 E-value=4.8e+02 Score=23.52 Aligned_cols=99 Identities=16% Similarity=0.091 Sum_probs=57.2
Q ss_pred HHHHHhhcC-CcccCCCCcceecCCCCCCCCHHH-----------HHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC----
Q psy1654 23 EAMSDLFLK-RLKFGTAGIRGPMGVGFSQMNDVV-----------IIQTGQGILSCAEKHIPNFKESGIIVGYDGR---- 86 (459)
Q Consensus 23 ~~~~~~~~~-~~~Fgt~GiRG~~~~~~~~ln~~~-----------v~~ig~A~g~~l~~~~~~~~~~~VvVg~D~R---- 86 (459)
+++.+.|++ ..++-..|+.......+.+++++. ...+.+++...+.++.. +.-|.|+.-..
T Consensus 70 ~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~---G~Iv~isS~~~~~~~ 146 (261)
T 4h15_A 70 EATRQRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGS---GVVVHVTSIQRVLPL 146 (261)
T ss_dssp HHHHHHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC---EEEEEECCGGGTSCC
T ss_pred HHHHHHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCC---ceEEEEEehhhccCC
Confidence 345555665 466666665433332344677663 44667777887776531 33455554321
Q ss_pred CC--h---------HHHHHHHHHHHHhCCCcEEEEc-CCCccchhHHHHHH
Q psy1654 87 HN--S---------KRFAELTASVFLNGGVKRVFLV-SRVCPTPIIAYSIR 125 (459)
Q Consensus 87 ~~--s---------~~l~~a~~~gL~~~G~~~V~~~-~g~~ptP~~~~av~ 125 (459)
+. + ..|.++++.-|...|+ +|--+ +|.+.||+......
T Consensus 147 ~~~~~~Y~asKaal~~lt~~lA~Ela~~gI-rVN~V~PG~i~T~~~~~~~~ 196 (261)
T 4h15_A 147 PESTTAYAAAKAALSTYSKAMSKEVSPKGV-RVVRVSPGWIETEASVRLAE 196 (261)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHGGGTE-EEEEEEECCBCCHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhhhhCe-EEEEEeCCCcCCcchhhhhH
Confidence 11 1 1244555666668899 98665 58999998765443
No 69
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=20.16 E-value=1.1e+02 Score=22.22 Aligned_cols=29 Identities=3% Similarity=0.040 Sum_probs=25.0
Q ss_pred CCceEEEeCCCCCCHHHHHHHHHHcCCCC
Q psy1654 218 SQVVITYSAMHGVGYPYVNQLFKLFKFKP 246 (459)
Q Consensus 218 ~~~kVvvD~~~G~~~~~~~~ll~~LG~~~ 246 (459)
++-+||+-|..|..+..+...|+++|.+.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~ 68 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTH 68 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSS
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCC
Confidence 34579999999998888999999999986
Done!