RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1654
(459 letters)
>gnl|CDD|100092 cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and
PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2
is thought to be a phosphopentomutase that catalyzes the
conversion of the nucleoside breakdown products,
ribose-1-phosphate and deoxyribose-1-phosphate to the
corresponding 5-phosphopentoses. PGM2L1 is thought to
catalyze the 1,3-bisphosphoglycerate-dependent synthesis
of glucose 1,6-bisphosphate and other
aldose-bisphosphates that serve as cofactors for several
sugar phosphomutases and possibly also as regulators of
glycolytic enzymes. PGM2 and PGM2L1 belong to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Other members of this superfamily include
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 487
Score = 545 bits (1408), Expect = 0.0
Identities = 187/410 (45%), Positives = 265/410 (64%), Gaps = 4/410 (0%)
Query: 32 RLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKR 91
RL+FGTAG+RG MG G ++MND + Q QG+ + +K P+ K G+++GYD RHNS+
Sbjct: 1 RLEFGTAGLRGKMGAGTNRMNDYTVRQATQGLANYLKKKGPDAKNRGVVIGYDSRHNSRE 60
Query: 92 FAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYD 151
FAELTA+V G+K V+L + PTP++++++R L GIMITASHNPKE NGYK+Y
Sbjct: 61 FAELTAAVLAANGIK-VYLFDDLRPTPLLSFAVRHLGADAGIMITASHNPKEYNGYKVYW 119
Query: 152 SKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQIQPCPLDSVLEKYGQSVLDGAYD 211
G QII P D +I EEI LE D + I+ + + + Y ++V +
Sbjct: 120 EDGAQIIPPHDAEIAEEIEAVLEPLDIKFEEALDSGLIKY-IGEEIDDAYLEAVKKLLVN 178
Query: 212 LGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEP 271
LNE + I Y+ +HGVG +V + K F +++V+ Q PDP+FPTV+FPNPEEP
Sbjct: 179 PELNEGKDLKIVYTPLHGVGGKFVPRALKEAGFTNVIVVEEQAEPDPDFPTVKFPNPEEP 238
Query: 272 SSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLK 331
+LDLA++ A + G+ +ILA DPDADRL VA K KDG+W++ TGNE+GAL + L + K
Sbjct: 239 GALDLAIELAKKVGADLILATDPDADRLGVAVKDKDGEWRLLTGNEIGALLADYLLEQRK 298
Query: 332 SKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLL 391
K ++ + + VSS++L IA+ G+K +ETLTGFKW+G K +LE GK L
Sbjct: 299 EK--GKLPKNPVIVKTIVSSELLRKIAKKYGVKVEETLTGFKWIGNKIEELESGGKKFLF 356
Query: 392 AFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADVYDK 441
FEE+IG++ G V DKDG++AA +AE+ AYL +QGK L L ++Y+K
Sbjct: 357 GFEESIGYLVGPFVRDKDGISAAALLAEMAAYLKAQGKTLLDRLDELYEK 406
>gnl|CDD|240294 PTZ00150, PTZ00150, phosphoglucomutase-2-like protein; Provisional.
Length = 584
Score = 529 bits (1365), Expect = 0.0
Identities = 207/428 (48%), Positives = 277/428 (64%), Gaps = 16/428 (3%)
Query: 20 KNKEAMSDLFLKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHI-PNFKESG 78
K++E + FLKR++FGTAG+RG MG GF+ MND+ + QT QG+ + + K G
Sbjct: 32 KDEEELKRRFLKRMEFGTAGLRGKMGAGFNCMNDLTVQQTAQGLCAYVIETFGQALKSRG 91
Query: 79 IIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITAS 138
+++GYDGR++S+RFAE+TASVFL+ G +V+L + PTP + Y++R L G+M+TAS
Sbjct: 92 VVIGYDGRYHSRRFAEITASVFLSKGF-KVYLFGQTVPTPFVPYAVRKLKCLAGVMVTAS 150
Query: 139 HNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIW---NIDRIRDQIQPCPLD 195
HNPKEDNGYK+Y S G QII P DK I +I+ NLE W + D PL
Sbjct: 151 HNPKEDNGYKVYWSNGAQIIPPHDKNISAKILSNLEPWSSSWEYLTETLVED-----PLA 205
Query: 196 SVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCS 255
V + Y + L Y+ ++S+V I Y+AMHGVG +V + L+ V Q
Sbjct: 206 EVSDAYFAT-LKSEYNPACCDRSKVKIVYTAMHGVGTRFVQKALHTVGLPNLLSVAQQAE 264
Query: 256 PDPEFPTVRFPNPEEP-SSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFT 314
PDPEFPTV FPNPEE +L L+++TA+ HGSTV+LANDPDADRLAVAEK + WKIFT
Sbjct: 265 PDPEFPTVTFPNPEEGKGALKLSMETAEAHGSTVVLANDPDADRLAVAEK-LNNGWKIFT 323
Query: 315 GNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKW 374
GNELGAL WWA+ R + + +F+ + VSS++L +A+ EG +YDETLTGFKW
Sbjct: 324 GNELGALLAWWAMKRYRRQ--GIDKSKCFFICTVVSSRMLKKMAEKEGFQYDETLTGFKW 381
Query: 375 MGTKTYDL-EQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQ 433
+G K +L + G L A+EEAIGFM GT V DKDGVTAA +AE+ YL +GK L +
Sbjct: 382 IGNKAIELNAENGLTTLFAYEEAIGFMLGTRVRDKDGVTAAAVVAEMALYLYERGKTLVE 441
Query: 434 LLADVYDK 441
L +Y +
Sbjct: 442 HLESLYKQ 449
>gnl|CDD|224034 COG1109, {ManB}, Phosphomannomutase [Carbohydrate transport and
metabolism].
Length = 464
Score = 261 bits (669), Expect = 2e-82
Identities = 116/410 (28%), Positives = 189/410 (46%), Gaps = 46/410 (11%)
Query: 29 FLKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHN 88
F+K+L FGT GIRG G + ++ G+ + S + ++VG D R +
Sbjct: 4 FMKKLLFGTDGIRGVAGEE---LTPEFALKLGRALGS----VLRKKGAPKVVVGRDTRLS 56
Query: 89 SKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYK 148
S+ A A+ + G+ V+ + + PTP +A++ R L G+MITASHNP E NG K
Sbjct: 57 SEMLAAALAAGLTSAGID-VYDL-GLVPTPAVAFATRKLGADAGVMITASHNPPEYNGIK 114
Query: 149 LYDSKGCQIISPIDKQIQEEIMRNLEIEDHIW-NIDRIRDQIQPCPLDSVLEKYGQSVLD 207
+ S G +I I+++I+ + +++ W + R++ + L++Y + +
Sbjct: 115 FFGSDGGKISDDIEEEIEAILAEEVDLPRPSWGELGRLK------RIPDALDRYIEFIKS 168
Query: 208 GAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPN 267
+VV+ +G +L K + +V C PD FP + PN
Sbjct: 169 LVDVDLKLRGLKVVVD--CANGAAGLVAPRLLKELGAE---VVSINCDPDGLFPNIN-PN 222
Query: 268 PEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWAL 327
P E LDLA + HG+ + +A D DADRL V D + G+++ AL A
Sbjct: 223 PGETELLDLAKAVKE-HGADLGIAFDGDADRLIVV----DERGNFVDGDQILALL---AK 274
Query: 328 HRLKSKQPNAPLQDYYFLASTV-SSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEG 386
+ L+ + + +TV SS L IA+ G K T G K++ K + + G
Sbjct: 275 YLLEKGKLPT-------VVTTVMSSLALEKIAKKLGGKVVRTKVGDKYIAEK---MRENG 324
Query: 387 KHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 436
+ EE+ + HV DG+ AA+ + EL+A GK L +LLA
Sbjct: 325 A--VFGGEESGHIIFPDHVRTGDGLLAALLVLELLAES---GKSLSELLA 369
>gnl|CDD|100093 cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein
of unknown function belongs to the
alpha-D-phosphohexomutase superfamily and is found in
both archaea and bacteria. The
alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Other
members of this superfamily include phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four structural domains (subdomains)
with a centrally located active site formed by four
loops, one from each subdomain. All four subdomains are
included in this alignment model.
Length = 461
Score = 190 bits (484), Expect = 4e-55
Identities = 114/414 (27%), Positives = 184/414 (44%), Gaps = 51/414 (12%)
Query: 34 KFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFA 93
KFGT G RG + F+ N V + Q I G++VGYD R S+ FA
Sbjct: 2 KFGTDGWRGIIAEDFTFEN-VRRV--AQAI--ADYLKEEGGGGRGVVVGYDTRFLSEEFA 56
Query: 94 ELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSK 153
A V G+ V+L R PTP ++++++ L A G+MITASHNP E NG K+ +
Sbjct: 57 RAVAEVLAANGID-VYLSDRPVPTPAVSWAVKKLGAAGGVMITASHNPPEYNGVKVKPAF 115
Query: 154 GCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQIQ---PCP--LDSVLEKYGQSVLDG 208
G +I I L + R I+ P P L+++
Sbjct: 116 GG----SALPEITAAIEARLASGEPPGLEARAEGLIETIDPKPDYLEALRSL-------- 163
Query: 209 AYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNP 268
DL ++ + + M+G G Y+ +L + + + + DP F + P P
Sbjct: 164 -VDLEAIREAGLKVVVDPMYGAGAGYLEELLRGAGVD---VEEIRAERDPLFGGIP-PEP 218
Query: 269 EEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALH 328
E +L + + G+ + LA D DADR+ D + N++ AL +
Sbjct: 219 IEK-NLGELAEAVKEGGADLGLATDGDADRIGAV----DEKGNFLDPNQILALL---LDY 270
Query: 329 RLKSKQPNAPLQDYYFLASTVS-SKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGK 387
L++K P + TVS + ++ IA+ GL ET GFK++ K + +E
Sbjct: 271 LLENKGLRGP------VVKTVSTTHLIDRIAEKHGLPVYETPVGFKYIAEK---MLEED- 320
Query: 388 HVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADVYDK 441
VL+ EE+ G H+ ++DG+ A + + E VA GK L +L+A++ ++
Sbjct: 321 -VLIGGEESGGLGIRGHIPERDGILAGLLLLEAVAKT---GKPLSELVAELEEE 370
>gnl|CDD|100086 cd03084, phosphohexomutase, The alpha-D-phosphohexomutase
superfamily includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Members of this family
include the phosphoglucomutases (PGM1 and PGM2),
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). These
enzymes play important and diverse roles in carbohydrate
metabolism in organisms from bacteria to humans. Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 355
Score = 173 bits (440), Expect = 5e-50
Identities = 82/309 (26%), Positives = 135/309 (43%), Gaps = 31/309 (10%)
Query: 132 GIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQIQP 191
GIMITASHNP EDNG K D G I S +K I++ + E + +
Sbjct: 32 GIMITASHNPPEDNGIKFVDPDGEPIASEEEKAIEDLAEKEDEPSAVAY------ELGGS 85
Query: 192 CPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVD 251
+L++Y +++ D+ + + +++GVG P QL + + + L
Sbjct: 86 VKAVDILQRYFEALKKLF-DVAALSNKKFKVVVDSVNGVGGPIAPQLLEKLGAEVIPL-- 142
Query: 252 AQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWK 311
C PD F + P+P ++L + + +A D DADRL V ++
Sbjct: 143 -NCEPDGNFGNIN-PDPGSETNLKQLLAVVKAEKADFGVAFDGDADRLIVVDE----NGG 196
Query: 312 IFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTG 371
G+EL AL + P + + VSS L +A+ G+K T TG
Sbjct: 197 FLDGDELLALLAVE---LFLTFNPRG-----GVVKTVVSSGALDKVAKKLGIKVIRTKTG 248
Query: 372 FKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDL 431
FKW+G + V+L EE+ G + +DG++AA+ + E++A GK L
Sbjct: 249 FKWVGEAMQE-----GDVVLGGEESGGVIFPEFHPGRDGISAALLLLEILAN---LGKSL 300
Query: 432 HQLLADVYD 440
+L +++
Sbjct: 301 SELFSELPR 309
>gnl|CDD|217263 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphomannomutase,
alpha/beta/alpha domain I.
Length = 138
Score = 147 bits (374), Expect = 7e-43
Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
Query: 32 RLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKR 91
R FGT+GIRG +GVG ++ ++ GQ I A ++VG D R++S+
Sbjct: 1 RQLFGTSGIRGKVGVG--ELTPEFALKLGQAI---ASYLRAKAGGGKVVVGRDTRYSSRE 55
Query: 92 FAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYD 151
A A+ GV+ V L+ + PTP ++++ R LN GIMITASHNP + NG K YD
Sbjct: 56 LARALAAGLAANGVE-VILLG-LLPTPALSFATRKLNADGGIMITASHNPPDYNGIKFYD 113
Query: 152 SKGCQIISPIDKQIQEEI 169
S G I ++++I+ I
Sbjct: 114 SDGGPISPEVEEKIEAII 131
>gnl|CDD|100089 cd03087, PGM_like1, This archaeal PGM-like
(phosphoglucomutase-like) protein of unknown function
belongs to the alpha-D-phosphohexomutase superfamily
which includes several related enzymes that catalyze a
reversible intramolecular phosphoryl transfer on their
sugar substrates. The alpha-D-phosphohexomutases include
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 439
Score = 136 bits (344), Expect = 2e-35
Identities = 104/413 (25%), Positives = 177/413 (42%), Gaps = 68/413 (16%)
Query: 35 FGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAE 94
FGT+GIRG +G ++ + ++ G+ + + ++VG D R +
Sbjct: 2 FGTSGIRGVVG---EELTPELALKVGKALGT-------YLGGGTVVVGRDTRTSGPMLKN 51
Query: 95 LTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKG 154
+ L+ G V + + PTP + Y++R L A G+MITASHNP E NG KL + G
Sbjct: 52 AVIAGLLSAGC-DVIDIG-IVPTPALQYAVRKLGDA-GVMITASHNPPEYNGIKLVNPDG 108
Query: 155 CQIISPIDKQIQEEIMRNLEIEDHIWNIDRIR----DQIQPCPLDSVLEKYGQSVLDGAY 210
+ + QEE EIE+ I++ R + DS +++Y +++LD
Sbjct: 109 TEF-----SREQEE-----EIEEIIFSERFRRVAWDEVGSVRREDSAIDEYIEAILD-KV 157
Query: 211 DLGLNEKSQVVITYSAMHGVGY---PYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPN 267
D+ + +VV+ +G G PY L + K + L +PD FP R P
Sbjct: 158 DIDGGKGLKVVV--DCGNGAGSLTTPY---LLRELGCKVITL---NANPDGFFP-GRPPE 208
Query: 268 PEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWAL 327
P P +L ++ G+ + +A+D DADR D + + G++L AL + L
Sbjct: 209 P-TPENLSELMELVRATGADLGIAHDGDADRAVFV----DEKGRFIDGDKLLALLAKYLL 263
Query: 328 HRLKSKQPNAPLQDYYFLASTVS-SKILHTIAQAEGLKYDETLTGFKWMGTKTYD-LEQE 385
K + + V S ++ + + G + T G + E
Sbjct: 264 EEGGGK-----------VVTPVDASMLVEDVVEEAGGEVIRTPVG------DVHVAEEMI 306
Query: 386 GKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADV 438
+ E G++ H L +DG+ A + EL+A + K L +LL ++
Sbjct: 307 ENGAVFGGEPNGGWIFPDHQLCRDGIMTAALLLELLA----EEKPLSELLDEL 355
>gnl|CDD|234431 TIGR03990, Arch_GlmM, phosphoglucosamine mutase. The MMP1680
protein from Methanococcus maripaludis has been
characterized as the archaeal protein responsible for
the second step of UDP-GlcNAc biosynthesis. This GlmM
protein catalyzes the conversion of
glucosamine-6-phosphate to glucosamine-1-phosphate. The
first-characterized bacterial GlmM protein is modeled by
TIGR01455. These two families are members of the larger
phosphoglucomutase/phosphomannomutase family
(characterized by three domains: pfam02878, pfam02879
and pfam02880), but are not nearest neighbors to each
other. This model also includes a number of sequences
from non-archaea in the Bacteroides, Chlorobi,
Chloroflexi, Planctomycetes and Spirochaetes lineages.
Evidence supporting their inclusion in this equivalog as
having the same activity comes from genomic context and
phylogenetic profiling. A large number of these
organisms are known to produce exo-polysaccharide and
yet only appeared to contain the GlmS enzyme of the
GlmSMU pathway for UDP-GlcNAc biosynthesis
(GenProp0750). In some organisms including Leptospira,
this archaeal GlmM is found adjacent to the GlmS as well
as a putative GlmU non-orthologous homolog. Phylogenetic
profiling of the GlmS-only pattern using PPP identifies
members of this archaeal GlmM family as the
highest-scoring result [Central intermediary metabolism,
Amino sugars].
Length = 443
Score = 130 bits (329), Expect = 2e-33
Identities = 109/410 (26%), Positives = 177/410 (43%), Gaps = 58/410 (14%)
Query: 35 FGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAE 94
FGT+GIRG +G + + ++ G+ + + ++VG D R +
Sbjct: 4 FGTSGIRGIVGEE---LTPELALKVGKAFGT-------YLRGGKVVVGRDTRTSGPMLEN 53
Query: 95 LTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKG 154
+ L+ G V + + PTP + Y++R L GIMITASHNP E NG KL +S G
Sbjct: 54 AVIAGLLSTGC-DVVDLG-IAPTPTLQYAVRELGADGGIMITASHNPPEYNGIKLLNSDG 111
Query: 155 CQIISPIDKQIQEEIMRNLEIE----DHIWNIDRIRDQIQPCPLDSVLEKYGQSVLDGAY 210
+S ++ EEI + + E D I + D ++ Y +++LD
Sbjct: 112 -TELSREQEEEIEEIAESGDFERADWDEIGTVTSDED---------AIDDYIEAILDKVD 161
Query: 211 DLGLNEKS-QVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPE 269
+ +K +VV+ +G G L + K + L C PD FP R P P
Sbjct: 162 VEAIRKKGFKVVV--DCGNGAGSLTTPYLLRELGCKVITL---NCQPDGTFPG-RNPEPT 215
Query: 270 EPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHR 329
P +L G+ + +A+D DADRL D + + G+ ALF + L
Sbjct: 216 -PENLKDLSALVKATGADLGIAHDGDADRLVFI----DEKGRFIGGDYTLALFAKYLLEH 270
Query: 330 LKSKQPNAPLQDYYFLASTVS-SKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKH 388
K + + VS S+ + +A+ G + T G + K +++EG
Sbjct: 271 GGGK-----------VVTNVSSSRAVEDVAERHGGEVIRTKVGEVNVAEK---MKEEG-- 314
Query: 389 VLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADV 438
+ E G++ H +DG+ AA EL+A +GK L +LLA++
Sbjct: 315 AVFGGEGNGGWIFPDHHYCRDGLMAAALFLELLA---EEGKPLSELLAEL 361
>gnl|CDD|100091 cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase
(PMM/PGM) bifunctional enzyme catalyzes the reversible
conversion of 1-phospho to 6-phospho-sugars (e.g.
between mannose-1-phosphate and mannose-6-phosphate or
glucose-1-phosphate and glucose-6-phosphate) via a
bisphosphorylated sugar intermediate. The reaction
involves two phosphoryl transfers, with an intervening
180 degree reorientation of the reaction intermediate
during catalysis. Reorientation of the intermediate
occurs without dissociation from the active site of the
enzyme and is thus, a simple example of processivity, as
defined by multiple rounds of catalysis without release
of substrate. Glucose-6-phosphate and
glucose-1-phosphate are known to be utilized for energy
metabolism and cell surface construction, respectively.
PMM/PGM belongs to the alpha-D-phosphohexomutase
superfamily which includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Other members of this
superfamily include phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the
phosphoglucomutases (PGM1 and PGM2). Each of these
enzymes has four domains with a centrally located active
site formed by four loops, one from each domain. All
four domains are included in this alignment model.
Length = 443
Score = 122 bits (309), Expect = 1e-30
Identities = 107/367 (29%), Positives = 167/367 (45%), Gaps = 54/367 (14%)
Query: 79 IIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITAS 138
++VG DGR +S A L G V + + PTP++ ++ L+ G+MITAS
Sbjct: 39 VVVGRDGRLSSPELAAALIEGLLAAGC-DVIDIG-LVPTPVLYFATFHLDADGGVMITAS 96
Query: 139 HNPKEDNGYKLYDSKGCQIISPIDK-QIQEEIMRNLEIEDHIWNIDRIRDQIQPCPLDSV 197
HNP E NG+K+ G P+ IQ +R + + +D +
Sbjct: 97 HNPPEYNGFKIVIGGG-----PLSGEDIQA--LRERAEKGDFAAATGRGSVEK---VD-I 145
Query: 198 LEKYGQSVLDGAYDLGLNEKS-QVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSP 256
L Y +L D+ L ++ +VV+ A +G P QL + + + L C P
Sbjct: 146 LPDYIDRLLS---DIKLGKRPLKVVV--DAGNGAAGPIAPQLLEALGCEVIPL---FCEP 197
Query: 257 DPEFPTVRFPNPEEPSSL-DL--AVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIF 313
D FP P+P +P +L DL AVK ++G+ + +A D D DRL V D + +I
Sbjct: 198 DGTFPN-HHPDPTDPENLEDLIAAVK---ENGADLGIAFDGDGDRLGVV----DEKGEII 249
Query: 314 TGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFK 373
G+ L ALF + + P A + S+ L+ + G K TG
Sbjct: 250 WGDRLLALF----ARDILKRNPGA-----TIVYDVKCSRNLYDFIEEAGGKPIMWKTGHS 300
Query: 374 WMGTKTYDLEQEGKHVLLAFEEA--IGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDL 431
++ K +++ G LLA E + I F D + D DG+ AA+R+ EL++ GK L
Sbjct: 301 FIKAK---MKETG--ALLAGEMSGHIFFKDRWYGFD-DGIYAALRLLELLSK---SGKTL 351
Query: 432 HQLLADV 438
+LLAD+
Sbjct: 352 SELLADL 358
>gnl|CDD|217264 pfam02879, PGM_PMM_II, Phosphoglucomutase/phosphomannomutase,
alpha/beta/alpha domain II.
Length = 103
Score = 92.4 bits (230), Expect = 8e-23
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 199 EKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDP 258
+ Y + A+DL +K + + Y +HGVG + +L K + +V+ C PD
Sbjct: 1 DAYIDRLAS-AFDLEALKKRGLKVVYDPLHGVGGEILPELLKRLGAE---VVELNCEPDG 56
Query: 259 EFPTVRFPNPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVA 302
+FPT + PNPEEP +L+L ++ + G+ + +A D DADRL V
Sbjct: 57 DFPT-KAPNPEEPEALELLIELVKEVGADLGIAFDGDADRLGVV 99
>gnl|CDD|223111 COG0033, Pgm, Phosphoglucomutase [Carbohydrate transport and
metabolism].
Length = 524
Score = 80.5 bits (199), Expect = 3e-16
Identities = 98/436 (22%), Positives = 150/436 (34%), Gaps = 72/436 (16%)
Query: 34 KFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFA 93
KFGT+G RG V N+ I+ Q I A+ ++VG D S+
Sbjct: 17 KFGTSGHRGSALVF--TFNENHILAFIQAI---ADYRAEGGIGGPLVVGGDTHALSEPAI 71
Query: 94 ELTASVFLNGGVKRVFLVS--RVCPTPIIAYSIRALN-----LALGIMITASHNPKEDNG 146
+ V GV+ + + PTP +++I N LA GI++T SHNP ED G
Sbjct: 72 QSALEVLAANGVEVI-VQGQGGFTPTPAASHAILTHNGKYKALADGIVLTPSHNPPEDGG 130
Query: 147 YKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQIQPCPLDSVLEKYGQSVL 206
K G + I+ +I ++ RI LD ++
Sbjct: 131 IKYNPPNGGPAPEKVTDAIEARANDLYKIGLL--DVKRI-------GLDQAYGSLTVKII 181
Query: 207 D--GAY--------DLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSP 256
D Y D K+ + + + + GV PY + + + + P
Sbjct: 182 DPVKDYVELLEEIFDFDAIRKAGLRLGFDPLGGVTGPYWKAIAEKYLLNLTGVNQN-VDP 240
Query: 257 DPEFPTVRFPNP------EEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQW 310
P+F + P+ P ++ ++ D++ AND D DR +
Sbjct: 241 TPDFMGLD-PDGNIRMDCSSPCAMAGLLRLRDKY--DFAAANDGDGDRHGIV-----TPG 292
Query: 311 KIF-TGNELGALFGWWA-LHRLKSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDET 368
N A+ + LHR P + VSS + + G E
Sbjct: 293 AGLMNPNHSLAVAIEYLFLHR-----PYWG-GIVAVGKTLVSSAAIDRVVAKLGRGLYEV 346
Query: 369 LTGFKWMGTKTYDLEQEGKHVLLAF--EEAIG-----FMDGTHVLDKDGVTAAVRMAELV 421
GFKW D G F EE+ G G DKDG A+ AE+
Sbjct: 347 PVGFKWFV----DGLDAGS---FGFGGEESAGASFLREKGGVWATDKDGNILALLAAEIT 399
Query: 422 AYLDSQGKDLHQLLAD 437
A GK + A+
Sbjct: 400 A---VTGKIPQEHYAE 412
>gnl|CDD|217265 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomannomutase,
alpha/beta/alpha domain III.
Length = 112
Score = 74.0 bits (183), Expect = 3e-16
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 19/129 (14%)
Query: 314 TGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTV-SSKILHTIAQAEGLKYDETLTGF 372
G+++ AL L + A + TV SS L +A+ G K T G
Sbjct: 1 DGDQILALLA----RYLLELKGGAGV------VKTVMSSLGLDRVAEKLGGKLVRTKVGD 50
Query: 373 KWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLH 432
K++ K + + G +L EE+ + KDG+ AA+ + E++A GK L
Sbjct: 51 KYVKEK---MREGG--AVLGGEESGHIIFLDFATTKDGILAALLVLEILAE---TGKSLS 102
Query: 433 QLLADVYDK 441
+LL ++ ++
Sbjct: 103 ELLEELPER 111
>gnl|CDD|100095 cd05802, GlmM, GlmM is a bacterial phosphoglucosamine mutase (PNGM)
that belongs to the alpha-D-phosphohexomutase
superfamily. It is required for the interconversion of
glucosamine-6-phosphate and glucosamine-1-phosphate in
the biosynthetic pathway of UDP-N-acetylglucosamine, an
essential precursor to components of the cell envelope.
In order to be active, GlmM must be phosphorylated,
which can occur via autophosphorylation or by the
Ser/Thr kinase StkP. GlmM functions in a classical
ping-pong bi-bi mechanism with
glucosamine-1,6-diphosphate as an intermediate. Other
members of the alpha-D-phosphohexomutase superfamily
include phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 434
Score = 79.5 bits (197), Expect = 5e-16
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 8/153 (5%)
Query: 35 FGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAE 94
FGT GIRG + + ++ G+ + + +++G D R +
Sbjct: 2 FGTDGIRGVANEP---LTPELALKLGR---AAGKVLGKGGGRPKVLIGKDTRISGYMLES 55
Query: 95 LTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKG 154
A+ + GV V L+ V PTP +AY R L G++I+ASHNP EDNG K + S G
Sbjct: 56 ALAAGLTSAGV-DVLLLG-VIPTPAVAYLTRKLRADAGVVISASHNPFEDNGIKFFSSDG 113
Query: 155 CQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRD 187
++ ++++I+ I + LE+ I R+
Sbjct: 114 YKLPDEVEEEIEALIDKELELPPTGEKIGRVYR 146
>gnl|CDD|237671 PRK14317, glmM, phosphoglucosamine mutase; Provisional.
Length = 465
Score = 79.6 bits (197), Expect = 6e-16
Identities = 54/184 (29%), Positives = 82/184 (44%), Gaps = 35/184 (19%)
Query: 35 FGTAGIRGPMG----------VGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYD 84
FGT GIRG +G VGF GQ + A P +++G D
Sbjct: 19 FGTDGIRGKVGELLTAPLALQVGF---------WAGQVLRQTAPGEGP------VLIGQD 63
Query: 85 GRHNSKRFA-ELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKE 143
R++S A L A L + V+ + +CPTP +AY R G+MI+ASHNP E
Sbjct: 64 SRNSSDMLAMALAAG--LTAAGREVWHLG-LCPTPAVAYLTRKSEAIGGLMISASHNPPE 120
Query: 144 DNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQIQPCPLDSVLEKYGQ 203
DNG K + + G ++ + QI+ + L D+ N R + +L+ Y
Sbjct: 121 DNGIKFFGADGTKLSPELQAQIEAGLRGELSSSDNASNWGRHYHR------PELLDDYRD 174
Query: 204 SVLD 207
++L+
Sbjct: 175 ALLE 178
>gnl|CDD|100096 cd05803, PGM_like4, This PGM-like (phosphoglucomutase-like) domain
is located C-terminal to a mannose-1-phosphate
guanyltransferase domain in a protein of unknown
function that is found in both prokaryotes and
eukaryotes. This domain belongs to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 445
Score = 74.3 bits (183), Expect = 3e-14
Identities = 63/235 (26%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 75 KESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIM 134
K I+VG DGR + ++ L G + L + PTP + +R + GI+
Sbjct: 36 KGGKIVVGRDGRPSGPMLEKIVIGALLACGCDVIDL--GIAPTPTVQVLVRQSQASGGII 93
Query: 135 ITASHNPKEDNGYKLYDSKG-------C-QIISPIDKQIQEEIMRNLEIEDHIWNIDRIR 186
ITASHNP + NG K G +++S + D + +
Sbjct: 94 ITASHNPPQWNGLKFIGPDGEFLTPDEGEEVLSCAEAG-----SAQKAGYDQLGEVTFSE 148
Query: 187 DQIQPCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKP 246
D I +D VL +++D D+ + + +++G G + +L + +
Sbjct: 149 DAIAE-HIDKVL-----ALVD--VDVIKIRERNFKVAVDSVNGAGGLLIPRLLEKLGCEV 200
Query: 247 LVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQHGSTVILANDPDADRLAV 301
+VL C P FP P PE + L AVK + G+ V A DPDADRLA+
Sbjct: 201 IVLN---CEPTGLFPHTPEPLPENLTQLCAAVK---ESGADVGFAVDPDADRLAL 249
>gnl|CDD|236050 PRK07564, PRK07564, phosphoglucomutase; Validated.
Length = 543
Score = 70.9 bits (175), Expect = 4e-13
Identities = 121/481 (25%), Positives = 165/481 (34%), Gaps = 159/481 (33%)
Query: 32 RLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHI-------PNF-KESGI---- 79
+KFGT+G RG S Q S E HI + + GI
Sbjct: 37 DVKFGTSGHRGS-----SL----------QP--SFNENHILAIFQAICEYRGKQGITGPL 79
Query: 80 IVGYDGRHNSKRFAELTA-SVFLNGGVKRVFLVSR--VCPTP-----IIAYSIRALNLAL 131
VG D S A +A V GV V +V R PTP I+ Y+ R LA
Sbjct: 80 FVGGDTHALS-EPAIQSALEVLAANGVGVV-IVGRGGYTPTPAVSHAILKYNGRGGGLAD 137
Query: 132 GIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMR--NLEIEDHIWNIDRIRDQI 189
GI+IT SHNP ED G K G P D + + I N + + + RI
Sbjct: 138 GIVITPSHNPPEDGGIKYNPPNG----GPADTDVTDAIEARANELLAYGLKGVKRI---- 189
Query: 190 QPCPLDSVLEKYGQSVLD--GAY--------DLGLNEKSQVVITYSAMHGVGYPYVNQLF 239
PLD L V+D Y D K+ + + + G PY +
Sbjct: 190 ---PLDRALASMTVEVIDPVADYVEDLENVFDFDAIRKAGLRLGVDPLGGATGPYWKAIA 246
Query: 240 KLFKFKPLVLVDAQCSPDPEFPTVRF----------PNPEEPSSL----------DLAVK 279
+ + L +V+A D PT F + P ++ DLA
Sbjct: 247 ERYGLD-LTVVNA--PVD---PTFNFMPLDDDGKIRMDCSSPYAMAGLLALKDAFDLAF- 299
Query: 280 TADQHGSTVILANDPDADR---------------LAVAEKAKDGQWKIFTGNELGALFGW 324
ANDPD DR LAVA I
Sbjct: 300 -----------ANDPDGDRHGIVTPGGLMNPNHYLAVA---------I-----------A 328
Query: 325 WALHRLKSKQPNAPLQDYYFLAST-VSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLE 383
+ H + A + T VSS ++ +A G K E GFKW +
Sbjct: 329 YLFHHRPGWRAGA------GVGKTLVSSAMIDRVAAKLGRKLYEVPVGFKWFV----NGL 378
Query: 384 QEGKHVLLAF--EEAIG----FMDGT-HVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 436
+G L F EE+ G DG+ DKDG+ A + AE++A GK ++
Sbjct: 379 DDGS---LGFGGEESAGASFLRRDGSVWTTDKDGLIAVLLAAEILA---VTGKSPSEIYR 432
Query: 437 D 437
+
Sbjct: 433 E 433
>gnl|CDD|130522 TIGR01455, glmM, phosphoglucosamine mutase. This model describes
GlmM, phosphoglucosamine mutase, also designated in MrsA
and YhbF E. coli, UreC in Helicobacter pylori, and
femR315 or FemD in Staphlococcus aureus. It converts
glucosamine-6-phosphate to glucosamine-1-phosphate as
part of the pathway toward UDP-N-acetylglucosamine for
peptidoglycan and lipopolysaccharides [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan, Central intermediary metabolism, Amino
sugars].
Length = 443
Score = 70.5 bits (173), Expect = 5e-13
Identities = 95/420 (22%), Positives = 161/420 (38%), Gaps = 71/420 (16%)
Query: 35 FGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAE 94
FGT G+RG G + + + G + +++G D R +
Sbjct: 1 FGTDGVRGR--AGQEPLTAELALLLGAAAGRVLRQGRD--TAPRVVIGKDTRLSGYMLEN 56
Query: 95 LTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKG 154
A+ + GV + L PTP +AY R L G+MI+ASHNP EDNG K + G
Sbjct: 57 ALAAGLNSAGVDVLLL--GPLPTPAVAYLTRTLRADAGVMISASHNPYEDNGIKFFGPGG 114
Query: 155 CQIISPIDKQIQEEIMRNLEIEDHIW-----NIDRIRDQIQPCPLDSVLEKYGQSVLDGA 209
+ +D + I L+ D + + R++ + +Y L
Sbjct: 115 FK----LDDATEAAIEALLDEADPLPRPESEGLGRVKRYPD------AVGRY-IEFLKST 163
Query: 210 YDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPE 269
GL V+ A +G Y +F+ + A+ P N
Sbjct: 164 LPRGLTLSGLKVVLDCA-NGAAYKVAPHVFR--------ELGAEVIAIGVEPDGLNINDG 214
Query: 270 ----EPSSLDLAVKTADQHGSTVILANDPDADR-LAVAEKAKDGQWKIFTGNELGALFGW 324
+L AV+ +HG+ + +A D DADR LAV D +I G+++ +
Sbjct: 215 CGSTHLDALQKAVR---EHGADLGIAFDGDADRVLAV-----DANGRIVDGDQILYI--- 263
Query: 325 WALHRLKSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKW----MGTKTY 380
A +S + L +A+ +S+ L + GL T G ++ M Y
Sbjct: 264 IARALKESGE----LAGNTVVATVMSNLGLERALEKLGLTLIRTAVGDRYVLEEMRESGY 319
Query: 381 DL--EQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADV 438
+L EQ G H++ +D + DG+ +A+++ ++ G L +L A+
Sbjct: 320 NLGGEQSG-HII--------LLD--YSTTGDGIVSALQVLTIMK---KSGSTLSELAAEF 365
>gnl|CDD|184614 PRK14314, glmM, phosphoglucosamine mutase; Provisional.
Length = 450
Score = 63.4 bits (155), Expect = 7e-11
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 31 KRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFK-ESGIIVGYDGRHNS 89
K+L FGT G+RG M + +Q G+ A N +++G D R +
Sbjct: 3 KKL-FGTDGVRGR--ANVYPMTAEMALQLGRA----AAYVFRNGSGRHRVVIGKDTRLSG 55
Query: 90 KRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKL 149
F + + GV V LV PTP IA+ R++ G++I+ASHNP +DNG K
Sbjct: 56 YMFENALIAGLCSMGVD-VLLVG-PLPTPGIAFITRSMRADAGVVISASHNPYQDNGIKF 113
Query: 150 YDSKGCQIISPIDKQIQEEIMRN 172
+ S G ++ ++ +I+ ++
Sbjct: 114 FSSDGFKLPDEVELRIEAMVLSK 136
>gnl|CDD|184620 PRK14323, glmM, phosphoglucosamine mutase; Provisional.
Length = 440
Score = 62.9 bits (153), Expect = 1e-10
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 32 RLKFGTAGIRG-----PMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGR 86
R FGT G+RG P+ F +++ GQ ++H P +++G D R
Sbjct: 3 RRYFGTDGVRGVAGEPPLTPEF-------VLKLGQAAGEVFKRHGP---RPVVLLGKDTR 52
Query: 87 HNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNG 146
+ A+ + GV+ L V PTP ++Y R L G++I+ASHNP +DNG
Sbjct: 53 QSGDMLEAALAAGLTSRGVRVEHL--GVLPTPGVSYLTRHLGATAGVVISASHNPYQDNG 110
Query: 147 YKLYDSKGCQIISPIDKQIQEEIMRNLEIEDH 178
K + + G ++ + +I+ + E+ +
Sbjct: 111 IKFFGADGEKLPDAAELEIEALLDEVPELAEV 142
>gnl|CDD|236787 PRK10887, glmM, phosphoglucosamine mutase; Provisional.
Length = 443
Score = 62.8 bits (154), Expect = 1e-10
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 116 PTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLE 174
PTP +AY R L GI+I+ASHNP DNG K + + G + + +++ I L+
Sbjct: 77 PTPAVAYLTRTLRAEAGIVISASHNPYYDNGIKFFSADG----TKLPDEVELAIEAELD 131
>gnl|CDD|237670 PRK14316, glmM, phosphoglucosamine mutase; Provisional.
Length = 448
Score = 62.2 bits (152), Expect = 2e-10
Identities = 24/41 (58%), Positives = 28/41 (68%)
Query: 114 VCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKG 154
V PTP +AY RAL G+MI+ASHNP EDNG K + S G
Sbjct: 76 VIPTPGVAYLTRALGADAGVMISASHNPVEDNGIKFFGSDG 116
>gnl|CDD|172797 PRK14321, glmM, phosphoglucosamine mutase; Provisional.
Length = 449
Score = 59.9 bits (145), Expect = 1e-09
Identities = 67/278 (24%), Positives = 118/278 (42%), Gaps = 48/278 (17%)
Query: 35 FGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAE 94
FGT+GIR V ++ + ++ G + + ++VG D R +S+
Sbjct: 5 FGTSGIRE---VVNEKLTPELALKVGLALGT-------YLGGGKVVVGKDTRTSSEMLKN 54
Query: 95 LTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKG 154
S L+ GV + + + PTP+ ++I+ N G+ ITASHNP E NG K++ G
Sbjct: 55 ALISGLLSTGVDVIDI--GLAPTPLTGFAIKLYNADAGVTITASHNPPEYNGIKVWQRNG 112
Query: 155 CQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQIQPCPLDSVLEKYGQSV-LDGAYDLG 213
++ ++ E I+ + + WN I + P + ++ + + L+ +Y
Sbjct: 113 MAYTPEMENEL-ERIIESGNFKRVPWN--EIGTLRRADPKEEYIKAALEMIKLENSY--- 166
Query: 214 LNEKSQVVITYSAMHGVG---YPYV-----NQLFKLFKFKPLVLVDAQCSPDPEFPTVRF 265
VV+ + +G G PY+ N++ L + P VR
Sbjct: 167 -----TVVV--DSGNGAGSILSPYLQRELGNKVISL-------------NSHPSGFFVRE 206
Query: 266 PNPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAE 303
P SL + KT + V +A+D DADR+ V +
Sbjct: 207 LEPNA-KSLSMLAKTVKVLKADVGIAHDGDADRIGVVD 243
>gnl|CDD|172796 PRK14320, glmM, phosphoglucosamine mutase; Provisional.
Length = 443
Score = 57.7 bits (139), Expect = 5e-09
Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 35 FGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCA-EKHIPNFKESGIIVGYDGRHNSKRFA 93
FGT GIRG V S + + G + S +K+ P F +IVG D R +S F
Sbjct: 5 FGTDGIRGE--VANSTITVEFTQKLGNAVGSLINQKNYPKF----VIVGQDTR-SSGGFL 57
Query: 94 ELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSK 153
+ LN V + V PTP++A+ A G +ITASHN DNG KL+ S
Sbjct: 58 KFALVSGLNAAGIDVLDLG-VVPTPVVAFMTVKHRAAAGFVITASHNKFTDNGIKLFSSN 116
Query: 154 GCQIISPIDKQIQEEI 169
G ++ +++++++ I
Sbjct: 117 GFKLDDALEEEVEDMI 132
>gnl|CDD|237669 PRK14315, glmM, phosphoglucosamine mutase; Provisional.
Length = 448
Score = 57.6 bits (140), Expect = 5e-09
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 108 VFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQE 167
V L+ + PTP +A R++ LG+MI+ASHNP EDNG KL+ G ++ I+ +I E
Sbjct: 73 VLLLGPI-PTPAVAMLTRSMRADLGVMISASHNPFEDNGIKLFGPDGFKLSDEIELEI-E 130
Query: 168 EIM 170
++
Sbjct: 131 ALL 133
>gnl|CDD|100090 cd03088, ManB, ManB is a bacterial phosphomannomutase (PMM) that
catalyzes the conversion of mannose 6-phosphate to
mannose-1-phosphate in the second of three steps in the
GDP-mannose pathway, in which GDP-D-mannose is
synthesized from fructose-6-phosphate. In Mycobacterium
tuberculosis, the causative agent of tuberculosis, PMM
is involved in the biosynthesis of mannosylated
lipoglycans that participate in the association of
mycobacteria with host macrophage phagocytic receptors.
ManB belongs to the the alpha-D-phosphohexomutase
superfamily which includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Other members of this
superfamily include the phosphoglucomutases (PGM1 and
PGM2), phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 459
Score = 57.6 bits (140), Expect = 6e-09
Identities = 41/143 (28%), Positives = 57/143 (39%), Gaps = 16/143 (11%)
Query: 34 KFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFA 93
KFGT+G+RG + + + D V + L E F + VG D R +S R A
Sbjct: 1 KFGTSGLRGLV----TDLTDEVCYAYTRAFLQHLESK---FPGDTVAVGRDLRPSSPRIA 53
Query: 94 ELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSK 153
A+ + G + V PTP +A IM+T SH P + NG K Y
Sbjct: 54 AACAAALRDAGFRVVDC--GAVPTPALALYAMKRGAP-AIMVTGSHIPADRNGLKFYRPD 110
Query: 154 GCQIISPIDKQIQEEIMRNLEIE 176
G I K E + +E
Sbjct: 111 G-----EITKA-DEAAILAALVE 127
>gnl|CDD|100094 cd05801, PGM_like3, This bacterial PGM-like
(phosphoglucomutase-like) protein of unknown function
belongs to the alpha-D-phosphohexomutase superfamily.
The alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Other
members of this superfamily include phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 522
Score = 56.5 bits (137), Expect = 2e-08
Identities = 115/449 (25%), Positives = 182/449 (40%), Gaps = 91/449 (20%)
Query: 32 RLKFGTAGIRG-PMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESG-IIVGYDGRHNS 89
R+ FGT+G RG + F N+ I+ Q I C + +G + +G D H
Sbjct: 20 RVAFGTSGHRGSSLKGSF---NEAHILAISQAI--CDYRKSQGI--TGPLFLGKD-THAL 71
Query: 90 KRFAELTA-SVFLNGGVKRVFLVSR--VCPTPIIAYSIRALN------LALGIMITASHN 140
A ++A V GV V + PTP+I+++I N LA GI+IT SHN
Sbjct: 72 SEPAFISALEVLAANGV-EVIIQQNDGYTPTPVISHAILTYNRGRTEGLADGIVITPSHN 130
Query: 141 PKEDNGYKLYDSKGCQIISPIDKQIQE---EIMRNLEIEDHIWNIDRIRDQIQPCPLDSV 197
P ED G+K G + I + I++ ++ N ++ ++ PL++
Sbjct: 131 PPEDGGFKYNPPHGGPADTDITRWIEKRANALLAN-----------GLKG-VKRIPLEAA 178
Query: 198 L-----------EKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPY---VNQLFKLFK 243
L Y L D+ KS + + + G PY + + + L
Sbjct: 179 LASGYTHRHDFVTPYVAD-LGNVIDMDAIRKSGLRLGVDPLGGASVPYWQPIAEKYGL-- 235
Query: 244 FKPLVLVDAQCSPDPEFPTV------RFPNPEEPSSLDLAVKTADQHGSTVILANDPDAD 297
L +V+ + P F T+ R + P ++ +K D+ + ANDPDAD
Sbjct: 236 --NLTVVNPKVDPTFRFMTLDHDGKIRM-DCSSPYAMAGLLKLKDKF--DLAFANDPDAD 290
Query: 298 RLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLAST-VSSKILHT 356
R + + + N ++ A+ L + +P + T VSS ++
Sbjct: 291 RHGIVTPS----AGLMNPNHYLSV----AIDYLFTHRPLWN--KSAGVGKTLVSSSMIDR 340
Query: 357 IAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAF--EEAIG--FM--DGT-HVLDKD 409
+A A G K E GFKW D L F EE+ G F+ DGT DKD
Sbjct: 341 VAAALGRKLYEVPVGFKWFVDGLLDGS-------LGFGGEESAGASFLRRDGTVWTTDKD 393
Query: 410 GVTAAVRMAELVAYLDSQGKDLHQLLADV 438
G+ + AE++A GKD QL ++
Sbjct: 394 GIIMCLLAAEILA---VTGKDPGQLYQEL 419
>gnl|CDD|184621 PRK14324, glmM, phosphoglucosamine mutase; Provisional.
Length = 446
Score = 55.0 bits (133), Expect = 4e-08
Identities = 54/164 (32%), Positives = 77/164 (46%), Gaps = 20/164 (12%)
Query: 35 FGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAE 94
FGT G+RG G + + + GI +KH K I+VG D R S E
Sbjct: 4 FGTDGVRGKAGEKLTAFL-AMRLAMAAGI--YFKKHSITNK---ILVGKDTRR-SGYMIE 56
Query: 95 LTASVFLNGGVKRV-FLVSRV--CPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYD 151
A V G+ V + V ++ PTP IA+ + GIMI+ASHNP DNG K +D
Sbjct: 57 -NALV---SGLTSVGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNPYYDNGIKFFD 112
Query: 152 SKGCQIISPIDKQIQE------EIMRNLEIEDHIWNIDRIRDQI 189
S G ++ +K+I+E I + + + I + RI D I
Sbjct: 113 SYGNKLDEEEEKEIEEIFFDEELIQSSQKTGEEIGSAKRIDDVI 156
>gnl|CDD|100087 cd03085, PGM1, Phosphoglucomutase 1 (PGM1) catalyzes the
bidirectional interconversion of glucose-1-phosphate
(G-1-P) and glucose-6-phosphate (G-6-P) via a glucose
1,6-diphosphate intermediate, an important metabolic
step in prokaryotes and eukaryotes. In one direction,
G-1-P produced from sucrose catabolism is converted to
G-6-P, the first intermediate in glycolysis. In the
other direction, conversion of G-6-P to G-1-P generates
a substrate for synthesis of UDP-glucose which is
required for synthesis of a variety of cellular
constituents including cell wall polymers and
glycoproteins. The PGM1 family also includes a
non-enzymatic PGM-related protein (PGM-RP) thought to
play a structural role in eukaryotes, as well as
pp63/parafusin, a phosphoglycoprotein that plays an
important role in calcium-regulated exocytosis in
ciliated protozoans. PGM1 belongs to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Other members of this superfamily include
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 548
Score = 54.2 bits (131), Expect = 8e-08
Identities = 77/296 (26%), Positives = 125/296 (42%), Gaps = 55/296 (18%)
Query: 34 KFGTAGIRGPMGVGFSQMN---DVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSK 90
K GT+G+R + V F Q N + V Q I + K + ++VG DGR+ +K
Sbjct: 12 KPGTSGLRKKVKV-FQQPNYLENFV-----QSIFNALPPE--KLKGATLVVGGDGRYYNK 63
Query: 91 RFAELTASVFLNGGVKRVFLVSR--VCPTPIIAYSIRALNLALGIMITASHNP---KEDN 145
++ + GV +V +V + + TP ++ IR GI++TASHNP + D
Sbjct: 64 EAIQIIIKIAAANGVGKV-VVGQNGLLSTPAVSAVIRKRKATGGIILTASHNPGGPEGDF 122
Query: 146 GYKLYDSKG-------CQIISPIDKQIQE-EIMRNLEIEDHIWNIDRI-RDQIQPCPL-- 194
G K S G I I K+I E +I + ++ ++ +I + P
Sbjct: 123 GIKYNTSNGGPAPESVTDKIYEITKKITEYKIADDPDV-----DLSKIGVTKFGGKPFTV 177
Query: 195 ---DSVLE--KYGQSVLDGAYDL--GLNEKSQVVITYSAMHGVGYPYVNQLF-KLFKFKP 246
DSV + + + + D +D L + + + AMHGV PY ++F +
Sbjct: 178 EVIDSVEDYVELMKEIFD--FDAIKKLLSRKGFKVRFDAMHGVTGPYAKKIFVEELGAPE 235
Query: 247 LVLVDAQCSPDPEF----PTVRFPNPEEPSSLDLAVKTADQHGSTVILANDPDADR 298
+V+ C+P P+F P PN L V+ A+D D DR
Sbjct: 236 SSVVN--CTPLPDFGGGHPD---PNLTYAKDL---VELMKSGEPDFGAASDGDGDR 283
>gnl|CDD|237672 PRK14318, glmM, phosphoglucosamine mutase; Provisional.
Length = 448
Score = 53.0 bits (128), Expect = 2e-07
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 114 VCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLY 150
V PTP +AY AL+ G+MI+ASHNP DNG K +
Sbjct: 80 VLPTPAVAYLTAALDADFGVMISASHNPMPDNGIKFF 116
>gnl|CDD|100088 cd03086, PGM3, PGM3 (phosphoglucomutase 3), also known as PAGM
(phosphoacetylglucosamine mutase) and AGM1
(N-acetylglucosamine-phosphate mutase), is an essential
enzyme found in eukaryotes that reversibly catalyzes the
conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate
as part of the UDP-N-acetylglucosamine (UDP-GlcNAc)
biosynthetic pathway. UDP-GlcNAc is an essential
metabolite that serves as the biosynthetic precursor of
many glycoproteins and mucopolysaccharides. AGM1 is a
member of the alpha-D-phosphohexomutase superfamily,
which catalyzes the intramolecular phosphoryl transfer
of sugar substrates. The alpha-D-phosphohexomutases have
four domains with a centrally located active site formed
by four loops, one from each domain. All four domains
are included in this alignment model.
Length = 513
Score = 51.4 bits (124), Expect = 5e-07
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 4/39 (10%)
Query: 119 IIAYSIRALNL---ALGIMITASHNPKEDNGYKLYDSKG 154
I+A ++R+ L +G+MITASHNP EDNG K+ D G
Sbjct: 23 ILA-ALRSKKLGGKTIGVMITASHNPVEDNGVKIVDPDG 60
>gnl|CDD|188111 TIGR01132, pgm, phosphoglucomutase, alpha-D-glucose
phosphate-specific. This enzyme interconverts
alpha-D-glucose-1-P and alpha-D-glucose-6-P [Energy
metabolism, Sugars].
Length = 544
Score = 50.6 bits (121), Expect = 1e-06
Identities = 106/422 (25%), Positives = 164/422 (38%), Gaps = 70/422 (16%)
Query: 33 LKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRF 92
+KFGT+G RG G N+ I+ Q I AE + +G D H
Sbjct: 40 VKFGTSGHRGSALRG--TFNEPHILAIAQAI---AEYRAAQGITGPLYIGKD-THALSEP 93
Query: 93 AELTASVFL--NGGVKRVFLVSRVCPTPIIAYSIRALN-----LALGIMITASHNPKEDN 145
A ++ L NG V + PTP ++++I N LA GI+IT SHNP ED
Sbjct: 94 AFISVLEVLAANGVEVIVQENNGFTPTPAVSHAILTHNKKGEPLADGIVITPSHNPPEDG 153
Query: 146 GYKLYDSKGCQIISPIDKQIQEEIMR--NLEIEDHIWNIDRIRDQIQPCPLDSVLEK--- 200
G K G P D + + I N + + + + R+ PL L
Sbjct: 154 GIKYNPPNG----GPADTEATQAIEDRANALLANGLKGVKRL-------PLAQALASGTV 202
Query: 201 ----YGQSVLDG---AYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQ 253
Q +DG D+ +K+ + + + G G Y ++ + + L LV+ Q
Sbjct: 203 KAHDLVQPYVDGLADIVDMAAIQKAGLRLGVDPLGGSGIDYWKRIAEKYNLN-LTLVNPQ 261
Query: 254 CSPDPEFPT------VRFPNPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKD 307
P F T +R + P ++ + D++ + NDPD DR + A
Sbjct: 262 VDPTFRFMTLDKDGKIRM-DCSSPYAMAGLLALRDKY--DLAFGNDPDYDRHGIVTPA-- 316
Query: 308 GQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDE 367
+ N A+ A++ L +P D + VSS ++ + G + E
Sbjct: 317 ---GLMNPNHYLAV----AINYLFQHRPQWG-GDVAVGKTLVSSAMIDRVVADLGRQLVE 368
Query: 368 TLTGFKWMGTKTYDLEQEGKHVLLAF--EEAIG--FM--DGT-HVLDKDGVTAAVRMAEL 420
GFKW +D F EE+ G F+ DGT DKDG+ + AE+
Sbjct: 369 VPVGFKWFVDGLFDGS-------FGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEI 421
Query: 421 VA 422
A
Sbjct: 422 TA 423
>gnl|CDD|215485 PLN02895, PLN02895, phosphoacetylglucosamine mutase.
Length = 562
Score = 48.5 bits (116), Expect = 5e-06
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 110 LVSRVCPTPIIAYSIRALNL--ALGIMITASHNPKEDNGYKLYDSKG 154
L S V I+A ++R+L A G+MITASHNP DNG K+ D G
Sbjct: 38 LESTVFRVGILA-ALRSLKTGAATGLMITASHNPVSDNGVKIVDPSG 83
>gnl|CDD|184619 PRK14322, glmM, phosphoglucosamine mutase; Provisional.
Length = 429
Score = 48.1 bits (114), Expect = 6e-06
Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 14/135 (10%)
Query: 35 FGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAE 94
FGT GIRG G + D + + G+ + E +IVG D R +
Sbjct: 6 FGTDGIRGVFG---ETLTDELAFKVGKALGEIV-------GEGKVIVGKDTRVSGDSLEA 55
Query: 95 LTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKG 154
++ + GV L+ + PTP +A R + + G++I+ASHNP E NG K+ G
Sbjct: 56 AISAGLTSMGVD--VLLCGILPTPAVALLTR-ITRSFGVVISASHNPPEYNGIKVLKG-G 111
Query: 155 CQIISPIDKQIQEEI 169
+I ++ +I+E I
Sbjct: 112 YKIPDEMEVEIEERI 126
>gnl|CDD|240352 PTZ00302, PTZ00302, N-acetylglucosamine-phosphate mutase;
Provisional.
Length = 585
Score = 47.7 bits (114), Expect = 9e-06
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 128 NLALGIMITASHNPKEDNGYKLYDSKGCQI 157
N ++G+MITASHNP +DNG K+ D G +
Sbjct: 74 NKSVGVMITASHNPIQDNGVKIIDPDGGML 103
>gnl|CDD|172795 PRK14319, glmM, phosphoglucosamine mutase; Provisional.
Length = 430
Score = 44.5 bits (105), Expect = 8e-05
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 114 VCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEI 169
V PTP +A I L A G+MI+ASHNP E NG K+ +G ++ ++++I++E+
Sbjct: 70 VLPTPALAL-ITKLEDAAGVMISASHNPPEYNGLKVL-MRGYKLPDEVEERIEKEM 123
>gnl|CDD|236557 PRK09542, manB, phosphomannomutase/phosphoglucomutase; Reviewed.
Length = 445
Score = 43.4 bits (103), Expect = 2e-04
Identities = 57/233 (24%), Positives = 93/233 (39%), Gaps = 38/233 (16%)
Query: 76 ESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRV--CPTPIIAYSIRALNLALGI 133
+ +++G+D R +S A F G + V R+ T + ++ L+ G
Sbjct: 35 ATTVVIGHDMRDSSPELAA----AFAEGVTAQGLDVVRIGLASTDQLYFASGLLDCP-GA 89
Query: 134 MITASHNPKEDNGYKLYDSKGCQI-ISPIDK-----QIQEEIMRNLEIEDHIWNIDRIRD 187
M TASHNP NG KL C+ P+ + I+++++ + + + +
Sbjct: 90 MFTASHNPAAYNGIKL-----CRAGAKPVGQDTGLAAIRDDLIAG--VPAYDGPPGTVTE 142
Query: 188 QIQPCPLDSVLEKYGQSVLDGAYDL-GLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKP 246
+ VL Y + L DL G+ V + M G P V P
Sbjct: 143 R-------DVLADYA-AFLRSLVDLSGIRPLKVAVDAGNGMGGHTVPAV------LGGLP 188
Query: 247 LVLVDAQCSPDPEFPTVRFPNPEEPSSL-DLAVKTADQHGSTVILANDPDADR 298
+ L+ D FP NP +P++L DL + G+ + LA D DADR
Sbjct: 189 ITLLPLYFELDGTFPN-HEANPLDPANLVDLQAFVRE-TGADIGLAFDGDADR 239
>gnl|CDD|185312 PRK15414, PRK15414, phosphomannomutase CpsG; Provisional.
Length = 456
Score = 42.6 bits (100), Expect = 3e-04
Identities = 69/272 (25%), Positives = 113/272 (41%), Gaps = 36/272 (13%)
Query: 35 FGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAE 94
F IRG +G ++N+ + + G+ + E K I++G D R S+
Sbjct: 7 FKAYDIRGKLG---EELNEDIAWRIGR---AYGEF----LKPKTIVLGGDVRLTSETLKL 56
Query: 95 LTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKG 154
A + GV L + T I ++ L + GI +TASHNP + NG KL +G
Sbjct: 57 ALAKGLQDAGVD--VLDIGMSGTEEIYFATFHLGVDGGIEVTASHNPMDYNGMKLV-REG 113
Query: 155 CQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQIQPCPLDSVLEKYGQSVLDGAY---- 210
+ IS D ++ ++ R E D P ++ +Y Q L AY
Sbjct: 114 ARPISG-DTGLR-DVQRLAEANDF------------PPVDETKRGRYQQINLRDAYVDHL 159
Query: 211 --DLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKF--KPLVLVDAQCSPDPEFPTVRFP 266
+ + + + + ++ +G P V+ + FK P+ L+ +PD FP P
Sbjct: 160 FGYINVKNLTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPN-GIP 218
Query: 267 NPEEPSSLDLAVKTADQHGSTVILANDPDADR 298
NP P D +HG+ + +A D D DR
Sbjct: 219 NPLLPECRDDTRNAVIKHGADMGIAFDGDFDR 250
>gnl|CDD|177942 PLN02307, PLN02307, phosphoglucomutase.
Length = 579
Score = 41.9 bits (99), Expect = 6e-04
Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 40/197 (20%)
Query: 73 NFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVF-----LVSRVCPTPIIAYSIRAL 127
K + +++G DGR+ +K ++ + GV+RV+ L+S TP ++ IR
Sbjct: 58 KVKGATLVLGGDGRYFNKEAIQIIIKIAAANGVRRVWVGQNGLLS----TPAVSAVIRER 113
Query: 128 NLAL---GIMITASHN---PKEDNGYKLYDSKGCQIISPIDKQIQEEIMRN------LEI 175
+ + G ++TASHN P+ED G K G P + I ++I N ++
Sbjct: 114 DGSKANGGFILTASHNPGGPEEDFGIKYNYESG----QPAPESITDKIYGNTLTIKEYKM 169
Query: 176 EDHIWNID---------RIRDQIQPCPLDSVLE--KYGQSVLDGAYDL--GLNEKSQVVI 222
+ I ++D + +D V + K +S+ D ++L L +
Sbjct: 170 AEDIPDVDLSAVGVTKFGGPEDFDVEVIDPVEDYVKLMKSIFD--FELIKKLLSRPDFTF 227
Query: 223 TYSAMHGVGYPYVNQLF 239
+ AMHGV Y ++F
Sbjct: 228 CFDAMHGVTGAYAKRIF 244
>gnl|CDD|215211 PLN02371, PLN02371, phosphoglucosamine mutase family protein.
Length = 583
Score = 39.7 bits (93), Expect = 0.003
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 68 EKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRA- 126
+K E + VG D R + R A+ + + G+ V + + TP + S
Sbjct: 107 KKKADGSGELRVSVGRDPRISGPRLADAVFAGLASAGL-DVVDMG-LATTPAMFMSTLTE 164
Query: 127 -LNLALGIMITASHNPKEDNGYKLYDSKG 154
+ IMITASH P NG K + G
Sbjct: 165 REDYDAPIMITASHLPYNRNGLKFFTKDG 193
>gnl|CDD|238870 cd01832, SGNH_hydrolase_like_1, Members of the SGNH-hydrolase
superfamily, a diverse family of lipases and esterases.
The tertiary fold of the enzyme is substantially
different from that of the alpha/beta hydrolase family
and unique among all known hydrolases; its active site
closely resembles the Ser-His-Asp(Glu) triad from other
serine hydrolases, but may lack the carboxlic acid.
Myxobacterial members of this subfamily have been
reported to be involved in adventurous gliding motility.
Length = 185
Score = 31.9 bits (73), Expect = 0.49
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 19/110 (17%)
Query: 237 QLFKLFKFKP-LVLVDA----QCSPDPEFPTVRFPNPEEPSSLDLAVKTADQHGSTVILA 291
QL +P LV + A P + T R + L+ AV+ G+ V++
Sbjct: 59 QLPAALALRPDLVTLLAGGNDILRPGTDPDTYR-------ADLEEAVRRLRAAGARVVVF 111
Query: 292 NDPDADRLAVAEKAKDGQWKIFTG------NELGALF-GWWALHRLKSKQ 334
PD L + + + GA+ W +
Sbjct: 112 TIPDPAVLEPFRRRVRARLAAYNAVIRAVAARYGAVHVDLWEHPEFADPR 161
>gnl|CDD|220174 pfam09314, DUF1972, Domain of unknown function (DUF1972). Members
of this family of functionally uncharacterized domains
are found in bacterial glycosyltransferases and
rhamnosyltransferases.
Length = 185
Score = 30.8 bits (70), Expect = 1.0
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 116 PTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQI 165
P +IAY I A+N A + I +N + Y L ++ G I+P K+I
Sbjct: 68 PARVIAYDIMAINYA--LKIIKENNIQNPIFYILGNTIGP-FIAPFAKKI 114
>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases,
NAD-binding and catalytic domains. Phosphoglycerate
dehydrogenases (PGDHs) catalyze the initial step in the
biosynthesis of L-serine from D-3-phosphoglycerate.
PGDHs come in 3 distinct structural forms, with this
first group being related to 2-hydroxy acid
dehydrogenases, sharing structural similarity to formate
and glycerate dehydrogenases of the D-specific
2-hydroxyacid dehydrogenase superfamily, which also
include groups such as L-alanine dehydrogenase and
S-adenosylhomocysteine hydrolase. Despite often low
sequence identity, these proteins typically have a
characteristic arrangement of 2 similar subdomains of
the alpha/beta Rossmann fold NAD+ binding form. The NAD+
binding domain is inserted within the linear sequence of
the mostly N-terminal catalytic domain, which has a
similar domain structure to the internal NAD binding
domain. Structurally, these domains are connected by
extended alpha helices and create a cleft in which NAD
is bound, primarily to the C-terminal portion of the 2nd
(internal) domain. Some related proteins have similar
structural subdomain but with a tandem arrangement of
the catalytic and NAD-binding subdomains in the linear
sequence. Many, not all, members of this family are
dimeric.
Length = 306
Score = 31.3 bits (72), Expect = 1.1
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 20/59 (33%)
Query: 278 VKTADQHGSTVILANDPDADRLAVAEKA------------------KDGQWKIFTGNEL 318
++ A + G +++ N P A+ +VAE + G W G EL
Sbjct: 84 LEAAKKRG--IVVTNTPGANSNSVAELTIGLMLALARQIPQADREVRAGGWDRPVGTEL 140
>gnl|CDD|100097 cd05805, MPG1_transferase, GTP-mannose-1-phosphate
guanyltransferase (MPG1 transferase), also known as
GDP-mannose pyrophosphorylase, is a bifunctional enzyme
with both phosphomannose isomerase (PMI) activity and
GDP-mannose phosphorylase (GMP) activity. The protein
contains an N-terminal NTP transferase domain, an
L-beta-H domain, and a C-terminal PGM-like domain that
belongs to the alpha-D-phosphohexomutase superfamily.
This subfamily is limited to bacteria and archaea. The
alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Members
of this group appear to lack conserved residues
necessary for metal binding and catalytic activity.
Other members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 441
Score = 31.1 bits (71), Expect = 1.1
Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 13/148 (8%)
Query: 75 KESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIM 134
S + V D S+ S L+ GV V + + P P+ Y+IR L + GI
Sbjct: 33 PGSTVTVSRDASRASRMLKRALISGLLSTGVN-VRDLGAL-PLPVARYAIRFLGASGGIH 90
Query: 135 ITASHNPKEDNGYKLYDSKGCQIISPIDKQI-----QEEIMRNL--EIEDHIWNIDR--- 184
+ S + + + +DS+G I ++++I +E+ R EI D D
Sbjct: 91 VRTSPDDPDKVEIEFFDSRGLNISRAMERKIENAFFREDFRRAHVDEIGDITEPPDFVEY 150
Query: 185 -IRDQIQPCPLDSVLEKYGQSVLDGAYD 211
IR ++ + + + V+D AY
Sbjct: 151 YIRGLLRALDTSGLKKSGLKVVIDYAYG 178
>gnl|CDD|226003 COG3472, COG3472, Uncharacterized conserved protein [Function
unknown].
Length = 342
Score = 30.6 bits (69), Expect = 1.9
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 392 AFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADVYDKGN 443
F EA GF+ H++ +D +M L+A + D D+ N
Sbjct: 73 GFIEAAGFLRKQHIVKRDEFIYYEQMVPLLAIYTYLTERNVD--PDHRDQLN 122
>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1. This model
represents the full length, over a thousand amino acids,
of a multicopy family of eukaryotic proteins, many of
which are designated ubiquitin-activating enzyme E1.
Members have two copies of the ThiF family domain
(pfam00899), a repeat found in ubiquitin-activating
proteins (pfam02134), and other regions.
Length = 1008
Score = 30.2 bits (68), Expect = 2.4
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 240 KLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQ----HGSTVILANDPD 295
K FK L + DP+ V F PE P + A + DQ + + D
Sbjct: 253 KTVFFKSL----REQLKDPKCLIVDFSKPERPPEIHTAFQALDQFQEKYSRKPNVGCQQD 308
Query: 296 ADRL 299
A+ L
Sbjct: 309 AEEL 312
>gnl|CDD|226797 COG4347, COG4347, Predicted membrane protein [Function unknown].
Length = 200
Score = 29.0 bits (65), Expect = 4.3
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 305 AKDGQWKIFTGNELGALFG-WWALHRLKSKQ-------PNAPLQDYYFLASTVSSK---- 352
A+ W + N LG ++G W L +L P++P +F+ S V+
Sbjct: 13 ARSLLWLLLAINFLGTIYGYIWYLPQLADTPAHFWIFVPDSPTATLFFVFSLVAFLLKKN 72
Query: 353 --ILHTIAQAEGLKY 365
+L +A +KY
Sbjct: 73 ASLLEALAFVTLVKY 87
>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and
catalytic domains. Phosphoglycerate dehydrogenases
(PGDHs) catalyze the initial step in the biosynthesis of
L-serine from D-3-phosphoglycerate. PGDHs come in 3
distinct structural forms, with this first group being
related to 2-hydroxy acid dehydrogenases, sharing
structural similarity to formate and glycerate
dehydrogenases. PGDH in E. coli and Mycobacterium
tuberculosis form tetramers, with subunits containing a
Rossmann-fold NAD binding domain. Formate/glycerate and
related dehydrogenases of the D-specific 2-hydroxyacid
dehydrogenase superfamily include groups such as formate
dehydrogenase, glycerate dehydrogenase, L-alanine
dehydrogenase, and S-adenosylhomocysteine hydrolase.
Despite often low sequence identity, these proteins
typically have a characteristic arrangement of 2 similar
subdomains of the alpha/beta Rossmann fold NAD+ binding
form. The NAD+ binding domain is inserted within the
linear sequence of the mostly N-terminal catalytic
domain, which has a similar domain structure to the
internal NAD binding domain. Structurally, these domains
are connected by extended alpha helices and create a
cleft in which NAD is bound, primarily to the C-terminal
portion of the 2nd (internal) domain. Some related
proteins have similar structural subdomain but with a
tandem arrangement of the catalytic and NAD-binding
subdomains in the linear sequence.
Length = 304
Score = 29.3 bits (67), Expect = 4.6
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 22/61 (36%)
Query: 278 VKTADQHGSTVILANDPDADRLAVAEKA------------------KDGQWKI--FTGNE 317
V+ A G +++ N P A+ ++VAE + G+W F G E
Sbjct: 78 VEAATARG--ILVVNAPGANTISVAEHTIALMLALARNIPQADASLRAGKWDRKKFMGVE 135
Query: 318 L 318
L
Sbjct: 136 L 136
>gnl|CDD|180428 PRK06151, PRK06151, N-ethylammeline chlorohydrolase; Provisional.
Length = 488
Score = 29.2 bits (66), Expect = 4.8
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 397 IGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADVYDKGNCITG-GFID 451
+GF DG H L +DG V + + ++ G + V D GN + G GFID
Sbjct: 11 LGFDDGDHRLLRDG--EVVFEGDRILFV---GHRFDGEVDRVIDAGNALVGPGFID 61
>gnl|CDD|176917 cd08908, START_STARD12-like, C-terminal lipid-binding START domain
of mammalian STARD12 and related proteins, which also
have an N-terminal Rho GTPase-activating protein
(RhoGAP) domain. This subgroup includes the
steroidogenic acute regulatory protein (StAR)-related
lipid transfer (START) domains of STARD12 (also known as
DLC-1, Arhgap7, and p122-RhoGAP) and related proteins.
It belongs to the START domain family, and in turn to
the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC)
domain superfamily of proteins that bind hydrophobic
ligands. SRPBCC domains have a deep hydrophobic
ligand-binding pocket. Proteins belonging to this
subgroup also have an N-terminal SAM (sterile alpha
motif) domain and a RhoGAP domain, and have a
SAM-RhoGAP-START domain organization. The precise
function of the START domain in this subgroup is
unclear.
Length = 204
Score = 28.4 bits (63), Expect = 6.2
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 167 EEIMRNLEIEDHIWNIDRIRDQIQPCPLDSVLEKY 201
EEI++ L E H+W++D + ++ LDS E Y
Sbjct: 65 EEILKRLLKEQHLWDVDLLDSKVIE-ILDSQTEIY 98
>gnl|CDD|224773 COG1860, COG1860, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 147
Score = 27.7 bits (62), Expect = 6.6
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 172 NLEIEDHIWNIDRIRDQIQPCPL 194
NLE E + + +R Q+QPCP+
Sbjct: 39 NLE-EGRRYKVVEVRSQVQPCPI 60
>gnl|CDD|236247 PRK08345, PRK08345, cytochrome-c3 hydrogenase subunit gamma;
Provisional.
Length = 289
Score = 28.6 bits (64), Expect = 7.1
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 29 FLKRLKFG-TAGIRGPMGVGFS----QMNDVVIIQTGQGI 63
+ RLK G G+RGP G GF + D+++I G G+
Sbjct: 81 VIHRLKEGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGM 120
>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent
dehydrogenases [Amino acid transport and metabolism /
General function prediction only].
Length = 350
Score = 28.5 bits (64), Expect = 7.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 276 LAVKTADQHGSTVILANDPDADRLAVAEKA 305
LA+ A G++V++ D +RL +A++A
Sbjct: 183 LAIALAKLLGASVVIVVDRSPERLELAKEA 212
>gnl|CDD|225246 COG2371, UreE, Urease accessory protein UreE [Posttranslational
modification, protein turnover, chaperones].
Length = 155
Score = 27.7 bits (62), Expect = 9.0
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 386 GKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADVYDKGN 443
G+ V L + DG +L +DG VR A L + K +L + GN
Sbjct: 43 GREVGLRLPRGVLLRDGDVLLAEDGELIVVR-AAPEDVLVIRAKTPLELAKAAHHLGN 99
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.407
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,043,015
Number of extensions: 2408023
Number of successful extensions: 2363
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2294
Number of HSP's successfully gapped: 72
Length of query: 459
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 359
Effective length of database: 6,502,202
Effective search space: 2334290518
Effective search space used: 2334290518
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)