RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1654
(459 letters)
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding,
structural genomics; 2.52A {Thermus thermophilus}
Length = 524
Score = 269 bits (691), Expect = 4e-85
Identities = 100/450 (22%), Positives = 166/450 (36%), Gaps = 62/450 (13%)
Query: 16 DAFFKNKEAMSDLFLKRLKFGTAGIRG-PMGVGFSQMNDVVIIQTGQGILSCAEKHIPNF 74
+++ + L+ ++FGT+G RG + F++ + ++ Q I AE
Sbjct: 8 TLYYEATPDPQN-PLEGVRFGTSGHRGSSLKATFTEAH---VLAIAQAI---AELRPSFG 60
Query: 75 KESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSR--VCPTPIIAYSIRALN---- 128
+ + D S+ SVF G++ V + + PTP+++ +I N
Sbjct: 61 ATGPLFLAKDTHALSEPAWATALSVFAAHGIE-VRVEADGDYTPTPLVSLAILEHNAHHE 119
Query: 129 -LALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRD 187
A G+++T SHNP ED G+K G + I + I+E N +++ + + R+
Sbjct: 120 AKADGVLLTPSHNPPEDGGFKYNPPTGGPANARITRAIEERA--NALLQEGLKGVKRL-- 175
Query: 188 QIQPCPLDSVLEKYGQSVLDGAY--------DLGLNEKSQVVITYSAMHGVGYPYVNQLF 239
PL L + G Y DL S + I + G +L
Sbjct: 176 -----PLREALARAKPFDYAGLYVEKVAEAVDLEAIRASGLRIGVDPLGGASLRVWERLA 230
Query: 240 KLFKFKPLVLVDAQCSPDPEFPTVRFP---NPEEPSSLDLAVKTADQHGSTVILANDPDA 296
+ PL +V+ P F + S +A A + + + NDPDA
Sbjct: 231 ESHGL-PLEVVNPTLDPTFRFMPKDHDGKIRMDCSSPYAMAGLLALKDRFDLAIGNDPDA 289
Query: 297 DRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKILHT 356
DR + G + N A + V+S +L
Sbjct: 290 DRHGIV--TPRG---LMNPNHYLAAALHHLYTTRSWPGA-------KVGKTAVTSALLDR 337
Query: 357 IAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIG-----FMDGTHVLDKDGV 411
+AQA G + ET GFK EG + A EE+ G F DKDG+
Sbjct: 338 VAQALGREVYETPVGFKHFV----AGLLEGW-LGFAGEESAGASFLRFDGRPFSTDKDGI 392
Query: 412 TAAVRMAELVAYLDSQGKDLHQLLADVYDK 441
+ AEL+A +G+ L + +K
Sbjct: 393 LMGLLAAELMAK---RGQAPDALYEALAEK 419
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A
{Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Length = 570
Score = 264 bits (677), Expect = 1e-82
Identities = 101/452 (22%), Positives = 162/452 (35%), Gaps = 62/452 (13%)
Query: 16 DAFFKNKEAMSDLFLKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFK 75
++ K + +KFGT+G RG G N+ I+ Q I AE+ N
Sbjct: 48 AQYYVLKPEAGNAE-HAVKFGTSGHRG--SAGRHSFNEPHILAIAQAI---AEERAKNGI 101
Query: 76 ESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSR--VCPTPIIAYSIRALN----- 128
VG D S+ V GV V + PTP ++ +I N
Sbjct: 102 TGPCYVGKDTHALSEPAFISVLEVLAANGVD-VIVQENNGFTPTPAVSNAILVHNKKGGP 160
Query: 129 LALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQ 188
LA GI+IT SHNP ED G K G + + K +++ N + + + RI
Sbjct: 161 LADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRA--NALLAGGLQGVKRI--- 215
Query: 189 IQPCPLDSVLEKYGQSVLD--GAY--------DLGLNEKSQVVITYSAMHGVGYPYVNQL 238
LD+ + +D + D+ +K+ + + + G G Y ++
Sbjct: 216 ----SLDAAMASGHVKAVDLVQPFVEGLADIVDMAAIQKAGLTLGVDPLGGSGIEYWKRI 271
Query: 239 FKLFKFKPLVLVDAQCSPDPEFPTVRFPN---PEEPSSLDLAVKTADQHGSTVILANDPD 295
+ +K L LV+ Q F + + S +A A + + ANDPD
Sbjct: 272 AEHYKL-NLTLVNDQVDQTFRFMHLDKDGAIRMDCSSECAMAGLLALRDKFDLAFANDPD 330
Query: 296 ADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLAST-VSSKIL 354
DR + G + N A+ + + + T VSS ++
Sbjct: 331 YDRHGIV--TPAG---LMNPNHYLAVAINYLFQHRPLWGKDVA------VGKTLVSSAMI 379
Query: 355 HTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIG-----FMDGTHVLDKD 409
+ G K E GFKW D +G EE+ G F DKD
Sbjct: 380 DRVVNDLGRKLVEVPVGFKWFV----DGLFDGS-FGFGGEESAGASFLRFDGTPWSTDKD 434
Query: 410 GVTAAVRMAELVAYLDSQGKDLHQLLADVYDK 441
G+ + AE+ A GK+ + ++ +
Sbjct: 435 GIIMCLLAAEITAV---TGKNPQEHYNELAAR 463
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis
of alginate, structural genomics; 1.70A {Thermus
thermophilus}
Length = 464
Score = 202 bits (517), Expect = 4e-60
Identities = 87/423 (20%), Positives = 156/423 (36%), Gaps = 50/423 (11%)
Query: 20 KNKEAMSDLFLKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGI 79
MS ++FGT G RG + F+ + + + H+ +
Sbjct: 3 YASMEMSA----PIRFGTEGFRGVIAREFTFAT---LHRLAEAY---GR-HLLERGGGLV 51
Query: 80 IVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASH 139
+VG+D R + FA + G+K V L+ PTP++++++R L A G M+TASH
Sbjct: 52 VVGHDTRFLADAFARALSGHLAGMGLK-VVLLKGPVPTPLLSFAVRHLKAAGGAMLTASH 110
Query: 140 NPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQIQPCPLDSVLE 199
NP + G K D+ G PI ++ + I + E + + + E
Sbjct: 111 NPPQYLGVKFKDATG----GPIAQEEAKAIEALVPEEA-----RALEGAYE---TLDLRE 158
Query: 200 KYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPE 259
Y +++ DL V+ + +M G G ++ + + V + P P
Sbjct: 159 AYFEALKA-HLDLKALSGFSGVLYHDSMGGAGAGFLKGFLRHVGLEIPV-RPIREEPHPL 216
Query: 260 FPTVRFPNPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELG 319
F V P P + + + +A D DADR+ V F +++
Sbjct: 217 FHGVN-PEPIPKNLGVTLAVLGPETPPSFAVATDGDADRVGVV----LPGGVFFNPHQVL 271
Query: 320 ALFGWWALHRLKSKQPNAPLQDYYFLASTV-SSKILHTIAQAEGLKYDETLTGFKWMGTK 378
K + +L + + G T GFKW+ +
Sbjct: 272 TT----LALYRFRKGHRGR------AVKNFAVTWLLDRLGERLGFGVTTTPVGFKWIKEE 321
Query: 379 TYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADV 438
+ + EE+ G H+ ++DG+ ++ + E VA + GKDL + +V
Sbjct: 322 ---FLKGD--CFIGGEESGGVGYPEHLPERDGILTSLLLLESVA---ATGKDLAEQFKEV 373
Query: 439 YDK 441
Sbjct: 374 EAL 376
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase,
phosphotransferase; HET: SEP; 2.40A {Oryctolagus
cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1
PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A*
Length = 561
Score = 204 bits (522), Expect = 4e-60
Identities = 102/429 (23%), Positives = 165/429 (38%), Gaps = 44/429 (10%)
Query: 33 LKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRF 92
K GT+G+R + V S N Q I+S E +E+ ++VG DGR K
Sbjct: 14 QKPGTSGLRKRVKVFQSSTNYAENF--IQSIISTVEPA--QRQEATLVVGGDGRFYMKEA 69
Query: 93 AELTASVFLNGGVKRVFLVS-RVCPTPIIAYSIRALNLALGIMITASHNPKEDNGY---K 148
+L + G+ R+ + + TP ++ IR + GI++TASHNP NG K
Sbjct: 70 IQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGDFGIK 129
Query: 149 LYDSKGCQIISPIDKQIQEEIMRNLEIE-DHIWNIDRIRDQIQPCPLDSVLEKYGQSVLD 207
S G I +I + E +D Q L++ + + ++D
Sbjct: 130 FNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVEIVD 189
Query: 208 --GAY--------DL-----GLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDA 252
AY D L+ +++ I AMHGV PYV ++ +
Sbjct: 190 SVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKIL-CEELGAPANSAV 248
Query: 253 QCSPDPEFPTVRFPNPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKI 312
C P +F P+P + DL V+T A D D DR +
Sbjct: 249 NCVPLEDFGGHH-PDPNLTYAADL-VETMKSGEHDFGAAFDGDGDRNMIL----GKHGFF 302
Query: 313 FTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGF 372
++ A+ +Q F S +S L +A A + ET TG+
Sbjct: 303 VNPSDSVAVIAANIFSIPYFQQTG----VRGFARSMPTSGALDRVANATKIALYETPTGW 358
Query: 373 KWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLH 432
K+ G +L K + L EE+ G H+ +KDG+ A + ++A + + +
Sbjct: 359 KFFG----NLMDASK-LSLCGEESFGTGSD-HIREKDGLWAVLAWLSILAT---RKQSVE 409
Query: 433 QLLADVYDK 441
+L D + K
Sbjct: 410 DILKDHWHK 418
>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis,
isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1
c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A
Length = 572
Score = 198 bits (506), Expect = 1e-57
Identities = 87/451 (19%), Positives = 147/451 (32%), Gaps = 66/451 (14%)
Query: 31 KRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESG-IIVGYDGRHNS 89
K GT+G+R + +Q I K + VG DGR+ +
Sbjct: 17 AGQKPGTSGLRKKVSEATQPNYLENFVQ---SI--FNTLRKDELKPKNVLFVGGDGRYFN 71
Query: 90 KRFAELTASVFLNGGVKRVFLVSR--VCPTPIIAYSIRALN-----LALGIMITASHNPK 142
++ + + V + + TP ++ IR +N GI++TASHNP
Sbjct: 72 RQAIFSIIRLAYANDIS-EVHVGQAGLMSTPASSHYIRKVNEEVGNCIGGIILTASHNPG 130
Query: 143 E----DNGYKLYDSKGCQIISPIDKQIQEEIMRNLEI----EDHIWNIDRIRDQIQPCPL 194
D G K G QI + E + +I+ + +
Sbjct: 131 GKEHGDFGIKFNVRTGAPAPEDFTDQIYTHTTKIKEYLTVDYEFEKHINLDQIGVYKFEG 190
Query: 195 DSVLEKYG---------------QSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLF 239
+ + + Q + D GL + MHGV PY +F
Sbjct: 191 TRLEKSHFEVKVVDTVQDYTQLMQKLFDFDLLKGLFSNKDFSFRFDGMHGVAGPYAKHIF 250
Query: 240 KLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLA------VKTADQHGSTVILAND 293
+ C P +F P+P + DL K A D
Sbjct: 251 GTLLGCSKESLL-NCDPSEDFGGGH-PDPNLTYAHDLVELLDIHKKKDVGTVPQFGAACD 308
Query: 294 PDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKI 353
DADR + Q+ + + L + L S +S
Sbjct: 309 GDADRNMIL----GRQFFVTPSDSLAVIAANANLIFKNGLLG--------AARSMPTSGA 356
Query: 354 LHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTA 413
L +A G+K ET TG+K+ G +L G + L EE+ G H+ +KDG+ A
Sbjct: 357 LDKVAAKNGIKLFETPTGWKFFG----NLMDAGL-INLCGEESFGTG-SNHIREKDGIWA 410
Query: 414 AVRMAELVAYL---DSQGKDLHQLLADVYDK 441
+ ++A+ + +++ + +
Sbjct: 411 VLAWLTILAHKNKNTDHFVTVEEIVTQYWQQ 441
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form,
enzyme-metal COMP isomerase; 2.00A {Pyrococcus
horikoshii}
Length = 455
Score = 112 bits (282), Expect = 4e-27
Identities = 98/417 (23%), Positives = 163/417 (39%), Gaps = 67/417 (16%)
Query: 35 FGTAGIRGPMGVGFSQMNDVVIIQTGQG---ILSCAEKHIPNFKESGIIVGYDGRHNSKR 91
FGT G+RG + ++ G +L + P ++VG D R + +
Sbjct: 5 FGTFGVRGIANEK---ITPEFAMKIGMAFGTLLKREGRKKPL-----VVVGRDTRVSGEM 56
Query: 92 FAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYD 151
E S L+ G V V + PTP + ++ + N G +ITASHNP E NG KL +
Sbjct: 57 LKEALISGLLSVGCD-VIDVG-IAPTPAVQWATKHFNADGGAVITASHNPPEYNGIKLLE 114
Query: 152 SKGCQIISPIDKQIQEEIMRNLEIEDHIW-NIDRIRDQIQPCPLDSVLEKYGQSVLDGAY 210
G + + + EE+ + + W I +R + +++ Y +++
Sbjct: 115 PNGMGLKKEREAIV-EELFFKEDFDRAKWYEIGEVRR-------EDIIKPYIEAIKS-KV 165
Query: 211 DLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTV-RFPNPE 269
D+ +K + + +G G + L + K + + PD FP PN E
Sbjct: 166 DVEAIKKRKPFVVVDTSNGAGSLTLPYLLRELGCKVITV---NAQPDGYFPARNPEPNEE 222
Query: 270 EPSSLDLAVKTADQHGSTVILANDPDADRL-AVAEKAKDGQWKIFTGNELGALFGWWALH 328
VK G+ +A D DADR + E G+ G++ AL A
Sbjct: 223 NLKEFMEIVK---ALGADFGVAQDGDADRAVFIDEN---GR--FIQGDKTFALV---ADA 271
Query: 329 RLKSKQPNAPLQDYYFLASTVSSKI-LHTIAQAEGLKYDETLTG----FKWMGTKTYDL- 382
LK K L +TV++ L IA+ G K T G + + +
Sbjct: 272 VLKEKGGGL-------LVTTVATSNLLDDIAKKHGAKVMRTKVGDLIVARALYENNGTIG 324
Query: 383 -EQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADV 438
E+ G V+ F + HVL +DG ++ E+ A GK +L+ ++
Sbjct: 325 GEENG-GVI--------FPE--HVLGRDGAMTVAKVVEIFA---KSGKKFSELIDEL 367
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase,
phosphoserine, enzyme complex, enzyme-metal complex,
isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa}
SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A*
1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A*
3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Length = 463
Score = 111 bits (279), Expect = 1e-26
Identities = 89/402 (22%), Positives = 156/402 (38%), Gaps = 58/402 (14%)
Query: 40 IRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASV 99
IRG +G + G+ I S + E + VG DGR + +
Sbjct: 19 IRGVVG---DTLTAETAYWIGRAIGSESLAR----GEPCVAVGRDGRLSGPELVKQLIQG 71
Query: 100 FLNGGVKRVFLVSRV--CPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKGCQI 157
++ G + VS V PTP++ Y+ L G+M+T SHNP + NG+K+ +
Sbjct: 72 LVDCGCQ----VSDVGMVPTPVLYYAANVLEGKSGVMLTGSHNPPDYNGFKIVVAGE--- 124
Query: 158 ISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQIQPCPLDSVLEKYGQSVLDGAYDLGLNEK 217
+ ++QIQ + + I D +D +L +Y + + D D+ + +
Sbjct: 125 -TLANEQIQ-------ALRERIEKNDLASGVGSVEQVD-ILPRYFKQIRD---DIAMAKP 172
Query: 218 SQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLA 277
+VV+ +GV QL + ++ C D FP P+P +P +L
Sbjct: 173 MKVVV--DCGNGVAGVIAPQLIEAL---GCSVIPLYCEVDGNFPN-HHPDPGKPENLKDL 226
Query: 278 VKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNA 337
+ + + LA D D DR+ V I + L LF + S+ P A
Sbjct: 227 IAKVKAENADLGLAFDGDGDRVGVV----TNTGTIIYPDRLLMLFA----KDVVSRNPGA 278
Query: 338 PLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEA- 396
+ ++ L + G + TG + K +++ G LLA E +
Sbjct: 279 D-----IIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKK---MKETG--ALLAGEMSG 328
Query: 397 -IGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLAD 437
+ F + D DG+ +A R+ E+ L +D + +
Sbjct: 329 HVFFKERWFGFD-DGIYSAARLLEI---LSQDQRDSEHVFSA 366
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase,
phosphoglucomutase, isomerase; 2.80A {Sulfolobus
tokodaii}
Length = 455
Score = 104 bits (263), Expect = 1e-24
Identities = 83/419 (19%), Positives = 156/419 (37%), Gaps = 71/419 (16%)
Query: 35 FGTAGIRGPMGVGFSQMNDVVIIQTGQ--GILSCAEKHIPNFKESG-IIVGYDGRHNSKR 91
FGT G+RG + + ++++ + G F ++ I+VG D R
Sbjct: 5 FGTDGVRGIVNKE---LTPELVLKLSKAIGTF---------FGKNSKILVGRDVRAGGDM 52
Query: 92 FAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYD 151
++ L+ GV+ V+ + PTP + Y+++ L G++ITASHNP NG K+ D
Sbjct: 53 LVKIVEGGLLSVGVE-VYDGG-MAPTPALQYAVKTLGYDGGVVITASHNPAPYNGIKVVD 110
Query: 152 SKGCQIISPIDKQIQEEIMRNLEIEDHIWN--IDRIRDQIQPCPLDSVLEKYGQSVLDGA 209
G +I + +I E++ W+ ++ D V+ Y +L
Sbjct: 111 KDGIEIRREKENEI-EDLFFTERFNTIEWSSLTTEVKR------EDRVISTYVNGILSHV 163
Query: 210 YDLGLNEKS-QVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRF-PN 267
+ +K+ +V+I + VG + + K + + DP F + P
Sbjct: 164 DIEKIKKKNYKVLI--DPANSVGALSTPLVARALGCKIYTI---NGNLDPLFSARQPEPT 218
Query: 268 PEEPSSLDLAVKTADQHGSTVILANDPDADRL-AVAEKAKDGQWKIFTGNELGALFGWWA 326
+ VK + +A+D DADR + + G+ + G+ G L +WA
Sbjct: 219 FDSLKETAEVVK---TLKVDLGVAHDGDADRAIFIDSE---GR--VQWGDRSGTLLSYWA 270
Query: 327 LHRLKSKQPNAPLQDYYFLASTVSSKI-LHTIAQAEGLKYDETLTG----FKWMGTKTYD 381
+ + + VSS + ++ D T G + +
Sbjct: 271 SVKNPKAIKK--------IVTAVSSSSLVEEYLSKYNIQVDWTKVGSVDIAHKVADENAL 322
Query: 382 L--EQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADV 438
E+ G + + H +DG + M EL+A ++ +L +
Sbjct: 323 AGFEENG-GFM--------YPP--HQYVRDGAMSFALMLELLA---NENVSSAELFDRL 367
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural
genomics, seattle structural genomics center for
infectious disease; 1.95A {Burkholderia thailandensis}
Length = 485
Score = 99.7 bits (249), Expect = 8e-23
Identities = 85/410 (20%), Positives = 143/410 (34%), Gaps = 67/410 (16%)
Query: 40 IRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAELTASV 99
IRG +G ++ V G+ S ++V DGR + A
Sbjct: 33 IRGVIG---KTLDADVARSIGRAFGSEVRAQ----GGDAVVVARDGRLSGPELVGALADG 85
Query: 100 FLNGGVKRVFLVSRV--CPTPIIAYSIRA--------LNLALGIMITASHNPKEDNGYKL 149
GV V V PTP+ ++ + I++T SHNP + NG+K+
Sbjct: 86 LRAAGVD----VVDVGMVPTPVGYFAASVPLALSGGERRVDSCIVVTGSHNPPDYNGFKM 141
Query: 150 YDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQIQPCPLDSVLEKYGQSVLDGA 209
+ QIQ + + + V ++Y + ++
Sbjct: 142 VLRGA----AIYGDQIQ-GLYKRIVDARFETGSGSYEQY-------DVADQYVERIVG-- 187
Query: 210 YDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPE 269
D+ L ++V+ A +GV P +LFK LV+ D FP P+P
Sbjct: 188 -DIKLTRPLKLVV--DAGNGVAGPLATRLFKAL---GCELVELFTDIDGNFPN-HHPDPA 240
Query: 270 EPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHR 329
P +L + + + A D D DRL V +I + LF
Sbjct: 241 HPENLQDVIAKLKATDAEIGFAFDGDGDRLGVV----TKDGQIIYPDRQLMLFA----EE 292
Query: 330 LKSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHV 389
+ S+ P A + ++ L + +G + TG + K L + G
Sbjct: 293 VLSRNPGAQ-----IIYDVKCTRNLARWVREKGGEPLMWKTGHSLVKAK---LRETG--A 342
Query: 390 LLAFEEA--IGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLAD 437
LA E + + F D + D DG+ R+ E++ ++ D LL
Sbjct: 343 PLAGEMSGHVFFKDRWYGFD-DGLYTGARLLEIL----ARVADPSALLNG 387
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne
metal-binding, phosphoprotein, structural genomics; HET:
SEP; 2.30A {Francisella tularensis subsp}
Length = 443
Score = 74.8 bits (185), Expect = 1e-14
Identities = 83/442 (18%), Positives = 149/442 (33%), Gaps = 121/442 (27%)
Query: 35 FGTAGIRGPMGVGFSQMNDVVIIQTGQ--GILSCAEKHIPNFKESGIIVGYDGRHNSKRF 92
FGT GIRG V S + + G G L + + +IVG D R +S F
Sbjct: 5 FGTDGIRGE--VANSTITVEFTQKLGNAVGSLINQKNYPKF-----VIVGQDTR-SSGGF 56
Query: 93 AE--LTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLY 150
+ L + G+ V + V PTP++A+ A G +ITASHN DNG KL+
Sbjct: 57 LKFALVSG-LNAAGID-VLDLG-VVPTPVVAFMTVKHRAAAGFVITASHNKFTDNGIKLF 113
Query: 151 DSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRDQIQPCPLDSVLEKYGQ---SVLD 207
S G ++ +++++++ I + + + L + +++Y + S
Sbjct: 114 SSNGFKLDDALEEEVEDMIDGDFIYQPQF-KFGSYKI------LANAIDEYIESIYSRFA 166
Query: 208 GAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDA-------QCSPD--- 257
+ VV+ HG +L +PD
Sbjct: 167 KFVNYKGK----VVV--DCAHGAAS----------HNFEALLDKFGINYVSIASNPDGLN 210
Query: 258 ---------PEFPTVRFPNPEEPSSLDLAVKTADQHGSTVILANDPDADR-LAVAEKAKD 307
++ AVK + + + ++ D DADR + V E
Sbjct: 211 INVGCGATCVS-------------NIKKAVK---EQKADLGISLDGDADRIIIVDEN--- 251
Query: 308 GQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKI-LHTIAQAEGLKYD 366
GQ G+ + + A + N + T + + +A + +
Sbjct: 252 GQ--EIDGDGILNIL---AQYSDICGGTNG-------IVGTQMTNMSYENHYRANKIPFI 299
Query: 367 ETLTG----FKWMGTKTYDL--EQEGKHVLLAFEEAIGFMDGTHVLDK----DGVTAAVR 416
+ G + + Y + E G HV+ L+ DG+ A++
Sbjct: 300 RSKVGDRYVLEDLVKYGYKIGGESSG-HVIN--------------LNFGTTGDGLFTAIQ 344
Query: 417 MAELVAYLDSQGKDLHQLLADV 438
L+A K + +
Sbjct: 345 ---LLAIFSQADKPVSEFKLQG 363
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold,
phosphohexomutase; 2.70A {Bacillus anthracis}
Length = 469
Score = 67.1 bits (165), Expect = 3e-12
Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 22/144 (15%)
Query: 15 DDAFFKNKEAMSDLFLKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQ--GILSCAEKHIP 72
+ K M F GT G+RG V ++ + + G+ G + + P
Sbjct: 12 ESTSLYKKAGMGKYF------GTDGVRG---VANKELTPELAFKIGRFGGYVLTKDTDRP 62
Query: 73 NFKESGIIVGYDGRHNSKRFAE--LTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLA 130
+I+G D R S E L A L+ G + V + V TP +AY +AL+
Sbjct: 63 K-----VIIGRDTR-ISGHMLEGALVAG-LLSTGAE-VMRLG-VISTPGVAYLTKALDAQ 113
Query: 131 LGIMITASHNPKEDNGYKLYDSKG 154
G+MI+ASHNP +DNG K + S G
Sbjct: 114 AGVMISASHNPVQDNGIKFFGSDG 137
Score = 30.5 bits (70), Expect = 1.0
Identities = 45/180 (25%), Positives = 76/180 (42%), Gaps = 46/180 (25%)
Query: 271 PSSLDLAVKTADQHGSTVILANDPDADR-LAVAEKAKDGQWKIFTGNELGALFGWWALHR 329
P L VK + G+ + LA D D DR +AV EK G I G+++ + A +
Sbjct: 242 PEVLAELVK---EKGADIGLAFDGDGDRLIAVDEK---GN--IVDGDQIMFIC---AKYM 290
Query: 330 LKSKQPNAPLQDYYFLASTVSSKI-LHTIAQAEGLKYDETLTG----FKWMGTKTYDL-- 382
++ Q + STV S + + +A G+ D+T G + M Y+L
Sbjct: 291 KETGQLKHNT-----VVSTVMSNLGFYKALEANGITSDKTAVGDRYVMEEMKRGGYNLGG 345
Query: 383 EQEGKHVLLAFEEAIGFMDGTHVLDK----DGVTAAVRMAELVAYLDSQGKDLHQLLADV 438
EQ G H++L LD DG+ +A+++ ++ K L +L ++
Sbjct: 346 EQSG-HIIL--------------LDYITTGDGMLSALQLVNIMK---MTKKPLSELAGEM 387
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida
albicans} PDB: 2dkc_A* 2dkd_A*
Length = 544
Score = 56.6 bits (136), Expect = 8e-09
Identities = 62/386 (16%), Positives = 116/386 (30%), Gaps = 81/386 (20%)
Query: 66 CAEKHIPNFKESGIIVGYDGRHNSKRFAELTASVFLNGGVKRVFLVSRVCPTPIIAYSIR 125
++ I + +++ D R +S + T F + + + TP + Y R
Sbjct: 122 VSDLKIDLSIPANVVIARDSRESSPALSMATIDGFQSVPNTKYQDFG-LFTTPELHYVTR 180
Query: 126 ALNLALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRI 185
L P ED Y +I + + + ++I
Sbjct: 181 TL------NDPDFGKPTEDGYYSKLAKSFQEIYTICESNNE-----KIDI---------- 219
Query: 186 RDQIQPCPLDSVLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFK 245
+D A +GVG P + +L + + K
Sbjct: 220 -------------------TIDAA------------------NGVGAPKIQELLEKYLHK 242
Query: 246 PL-VLVDAQCSPDPEFPTVR----FPNPEEPSSLDLAVKTADQHGSTVILANDPDADRLA 300
+ V P + + L VK + + + D DADRL
Sbjct: 243 EISFTVVNGDYKQPNLLNFDCGADYVKTNQ--KLPKNVK---PVNNKLYASFDGDADRLI 297
Query: 301 VAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKILHT--IA 358
+ D ++K+ G++L LF L +L + + + T + T +
Sbjct: 298 CYYQNNDNKFKLLDGDKLSTLFA-LFLQQLFKQIDPTKISLNIGVVQTAYANGSSTKYVE 356
Query: 359 QAEGLKYDETLTGFKW----MGTKTYDL--EQEGKHVLLAFEEAIGFMDGTHVLDKDGVT 412
+ T TG K + E G H + F + + D
Sbjct: 357 DVLKIPVRCTPTGVKHLHHEAENFDIGVYFEANG-HGTVIFNPEAEKKIFDYKPNNDNEA 415
Query: 413 AAVRMAELVAYLDSQ--GKDLHQLLA 436
A+++ + + L +Q G + LLA
Sbjct: 416 KAIKVLQNFSQLINQTVGDAISDLLA 441
Score = 48.1 bits (114), Expect = 5e-06
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 120 IAYSIRALNL---ALGIMITASHNPKEDNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIE 176
I S+R+ L +G+MITASHNP EDNG K+ D G + S +K + +
Sbjct: 45 IIASLRSKYLQGKTVGVMITASHNPPEDNGVKVVDPLGSMLESSWEKYATDLANASPSPS 104
Query: 177 DH 178
+
Sbjct: 105 ND 106
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 8e-05
Identities = 51/378 (13%), Positives = 117/378 (30%), Gaps = 113/378 (29%)
Query: 95 LTASVFLNGGVKRVF------LVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYK 148
+ V L+ V+ L + C +P ++ + L I + + D+
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSP---ETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 149 LYDSKGCQIISPIDKQIQEEIMRN-LEIEDHIWNIDRIRD-QIQPCP-LDSVLEKYGQSV 205
+ I + + + ++ + N L + ++ N + C L + ++ + V
Sbjct: 223 IKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKIL--LTTRF-KQV 277
Query: 206 LDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRF 265
D L + + + + +M + V L + + Q P E T
Sbjct: 278 TD---FLSAATTTHISLDHHSM-TLTPDEVKSLLLKY-----LDCRPQDLP-REVLTT-- 325
Query: 266 PNPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKAKDG-----QWKIFTGNELGA 320
NP L++ +AE +DG WK ++L
Sbjct: 326 -NP-----RRLSI----------------------IAESIRDGLATWDNWKHVNCDKLTT 357
Query: 321 LFGWWALHRLKSKQPNAPLQDYY-----FLAST-VSSKILHTIAQAEGLKYDETLTGFKW 374
+ +L+ L+ + + + F S + + +L + W
Sbjct: 358 IIE-SSLNVLEPAE----YRKMFDRLSVFPPSAHIPTILL------------SLI----W 396
Query: 375 MGTKTYDLEQEGKHVLLAFEEAIGFMDGTH---VLDKDGVTAAVRMAELVAYLDSQGK-- 429
D+ ++ H +++K + + + + YL+ + K
Sbjct: 397 FDVIKSDVMV--------------VVNKLHKYSLVEKQPKESTISIPSI--YLELKVKLE 440
Query: 430 ---DLHQLLADVYDKGNC 444
LH+ + D Y+
Sbjct: 441 NEYALHRSIVDHYNIPKT 458
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 0.001
Identities = 82/500 (16%), Positives = 150/500 (30%), Gaps = 163/500 (32%)
Query: 48 FSQMNDV-----VIIQTGQGILSCAEKHIPNFKESGIIVG--YDGRHNSKRF-------A 93
+ + ND+ ++Q L ++ I N+ + I+ +D + NS F A
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 94 ELTASVFLNGG----------VKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKE 143
+L A +F GG ++ ++ V +I +S L+ +
Sbjct: 155 QLVA-IF--GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS-------ELIRTTLD 204
Query: 144 DNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIW--NIDRIRDQ----IQP--CPLD 195
K++ ++G I+ W N D+ P CPL
Sbjct: 205 AE--KVF-TQGLNILE--------------------WLENPSNTPDKDYLLSIPISCPLI 241
Query: 196 SVL---------EKYGQSVLDGAYDL-GLNEKSQVVI---------TYSAMHGVGYPYVN 236
V+ + G + + L G SQ ++ ++ + +
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 237 QLFKLFKFKPLVLVDAQCSPDPEFPTVRFP---------NPE-EPSSLDLAVK--TADQH 284
LF + V + +P P N E PS + L++ T +Q
Sbjct: 302 VLF-------FIGVRCYEA----YPNTSLPPSILEDSLENNEGVPSPM-LSISNLTQEQV 349
Query: 285 GSTVILAND--PDADRLAVAEKAKDGQWKIF--TGNELGALFGW-WALHRLK-------S 332
V N P ++ ++ +G K +G +L+G L + K S
Sbjct: 350 QDYVNKTNSHLPAGKQVEIS--LVNGA-KNLVVSGPPQ-SLYGLNLTLRKAKAPSGLDQS 405
Query: 333 KQPN---APLQDYYFLASTVS----SKILHTIAQA-EGLKYDETLTGFKWMG-------- 376
+ P FL V+ S +L A + + D +
Sbjct: 406 RIPFSERKLKFSNRFL--PVASPFHSHLL---VPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 377 -TKT-YDLEQEGKHVLLA-----------FEEAIGFMDGTHVLDKD-GVTAAVRMAELVA 422
T DL + +E F TH+LD G + + L
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF-KATHILDFGPGGAS--GLGVLTH 517
Query: 423 YLDSQGKDLHQLLADVYDKG 442
G + ++A D
Sbjct: 518 RN-KDGTGVRVIVAGTLDIN 536
Score = 38.1 bits (88), Expect = 0.007
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 30/102 (29%)
Query: 343 YFLASTVSSKILHTIAQA-EGLKYDETLTGFKWMGTKTYDLEQEGKHVLLA-FEEAIGFM 400
+F+AS + + + + EG D+ E L+ F +G++
Sbjct: 27 FFIASQLQEQFNKILPEPTEGFAADD---------------EPTTPAELVGKF---LGYV 68
Query: 401 DGTHVLDKDGVTAAVRMAELV------AYLDSQGKDLHQLLA 436
+ +++ V ++ L YL +G D+H L A
Sbjct: 69 --SSLVEPSKVGQFDQVLNLCLTEFENCYL--EGNDIHALAA 106
Score = 37.0 bits (85), Expect = 0.014
Identities = 58/317 (18%), Positives = 97/317 (30%), Gaps = 104/317 (32%)
Query: 164 Q-IQEEIM-----RNLEIEDHIWNIDRIRDQIQPCPLDSVLEKYGQSVLDGAYDLGLNEK 217
Q QE+ M + + +W +R D + YG S+LD + N
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVW--NRA-DN-------HFKDTYGFSILDIVIN---NPV 1670
Query: 218 SQVVITYSAMH--GVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVR-------FPNP 268
+ + H G + + + F+ +VD + + F + F +
Sbjct: 1671 NLTI------HFGGEKGKRIRENYSAMIFET--IVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Query: 269 EEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEKA------KDG---QWKIFTGNELG 319
+ L T Q P A L + EKA G F G+ LG
Sbjct: 1723 KG--LLSATQFT--Q----------P-A--LTLMEKAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 320 ---ALFGWWALHRLKSKQPNAPLQDYYFLASTVSSKILHT--IAQAEGLKYDETLTGFKW 374
AL A L D + S V +++ + + DE
Sbjct: 1766 EYAAL---------------ASLADVMSIESLV--EVVFYRGMTMQVAVPRDELGRSNYG 1808
Query: 375 M-----GTKTYDLEQEGKHVLLAFEEAIGFMDGTHV----LDKDG---VTA----AV-RM 417
M G QE L E +G G V + + V A A+ +
Sbjct: 1809 MIAINPGRVAASFSQE---ALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTV 1865
Query: 418 AELVAYLDSQGKDLHQL 434
++ ++ Q D+ +L
Sbjct: 1866 TNVLNFIKLQKIDIIEL 1882
Score = 36.6 bits (84), Expect = 0.019
Identities = 49/326 (15%), Positives = 87/326 (26%), Gaps = 142/326 (43%)
Query: 121 AYSIRALNLALG-----IMI-TASHNPKEDNGYKLYDSKGCQIISPIDKQIQ-EEIMRNL 173
AYS R L L+ G +++ TAS +L + + P + +E
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIAS----QLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 174 EIE----DHIWNIDRIRDQIQPCPLDSVLE--------KY--GQSV------LDGAYDLG 213
E+ + + + + + D VL Y G + L D
Sbjct: 59 ELVGKFLGY---VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 214 LNEKSQVVITY-SAMHGVGYP--------------------------------YVNQLFK 240
L + +++ Y +A P Y +L
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 241 LFK-FKPLV----------------------------------LVDAQCSPDPEF---PT 262
L++ + LV L + +PD ++
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 263 VRFP-------------------NPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAE 303
+ P P E L +K A H ++ A +A+AE
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGE---LRSYLKGATGHSQGLVTA-------VAIAE 285
Query: 304 KAKDGQWKIFTGNE---LGALF--GW 324
W+ F + + LF G
Sbjct: 286 -TDS--WESFFVSVRKAITVLFFIGV 308
Score = 34.6 bits (79), Expect = 0.081
Identities = 40/236 (16%), Positives = 73/236 (30%), Gaps = 71/236 (30%)
Query: 232 YPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSS-LDLAVK----TADQHGS 286
+ +QL + F K L PE PT F +EP++ +L K +
Sbjct: 27 FFIASQLQEQFN-KIL----------PE-PTEGFAADDEPTTPAELVGKFLGYVSSL--- 71
Query: 287 TVILANDPDADRLAVAEKA-KDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDY--- 342
+ V + + GN++ AL +L + ++
Sbjct: 72 ---VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL-----AAKLLQENDTTLVKTKELI 123
Query: 343 --YFLASTVSSK--------ILHTIAQAEGLK-YDETLTGFKWMG---TKTYDLEQEGKH 388
Y A ++ + L + + G G T Y
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV--AIFG----GQGNTDDY-------- 169
Query: 389 VLLAFEEAIGFMDGTHVLDKDGV-TAAVRMAELVA------YLDSQGKDLHQLLAD 437
FEE HVL D + +A ++EL+ + +QG ++ + L +
Sbjct: 170 ----FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Score = 28.1 bits (62), Expect = 7.3
Identities = 33/156 (21%), Positives = 45/156 (28%), Gaps = 56/156 (35%)
Query: 29 FLKR-LKFGTAGIR-GPMGVGF-SQ-MNDVVIIQTGQGILSCAEKHIPNFKES--GIIV- 81
F +R LKF R P+ F S + I K+ +F I V
Sbjct: 409 FSERKLKFSN---RFLPVASPFHSHLLVPAS-----DLINKDLVKNNVSFNAKDIQIPVY 460
Query: 82 ----GYDGRHNSKRFAE------------------LTAS---VFLNGGVKRV-FLVSRVC 115
G D R S +E A+ F GG + L R
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK 520
Query: 116 PTPIIAYSIRALNLALGIMITASH---NPKEDNGYK 148
+R +I A NP +D G+K
Sbjct: 521 D----GTGVR--------VIVAGTLDINPDDDYGFK 544
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 30.6 bits (70), Expect = 0.89
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 20/59 (33%)
Query: 278 VKTADQHGSTVILANDPDADRLAVAEKA------------------KDGQWKIFTGNEL 318
+ A++ + + P A + E K G +K G EL
Sbjct: 84 TEEAEKRN--IKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLEL 140
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical
domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Length = 188
Score = 29.1 bits (65), Expect = 2.3
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 8/58 (13%)
Query: 352 KILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKD 409
+L A+ G ++ + + V AFE+A DG VL
Sbjct: 18 NLLKLAAEKLGKDFETAWREVWVPLEEEWG------EVYAAFEDAA--KDGIDVLKGH 67
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 28.8 bits (65), Expect = 3.8
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 276 LAVKTADQHGSTVILANDPDADRLAVAEK 304
A +A G+ V++ D + RLA A+
Sbjct: 200 AAAASARLLGAAVVIVGDLNPARLAHAKA 228
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: MSE; 2.40A {Pectobacterium
atrosepticum} SCOP: d.17.4.27
Length = 135
Score = 27.8 bits (61), Expect = 4.5
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 4/48 (8%)
Query: 270 EPSSLDLAVKTADQHGSTVILANDPDADR----LAVAEKAKDGQWKIF 313
+S D A + G+ A L + K+ G W+
Sbjct: 79 VQTSADWAFVRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTA 126
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein
structure, midwest center for S genomics, MCSG, PSI-2;
HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Length = 218
Score = 28.0 bits (63), Expect = 5.1
Identities = 11/101 (10%), Positives = 33/101 (32%), Gaps = 15/101 (14%)
Query: 274 LDLAVKTADQHGST---VIL---ANDPDADRLAVAEKAKDGQWKIFT---GNELGALFGW 324
++LA ++ +I+ + + + A+ A + ++ G GA
Sbjct: 98 INLATRSFTPQEGVGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVGMPEGAPIPV 157
Query: 325 WALHRLKSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKY 365
+ + + + + ++ + IA+ Y
Sbjct: 158 EGTNDYRRDREGNVIV------TRLNEGMCQEIAKDGKGIY 192
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 28.4 bits (64), Expect = 5.7
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 276 LAVKTADQHGSTVILANDPDADRLAVAEK 304
A A G+ ++ D + +RL +
Sbjct: 200 CAAAGARLLGAACVIVGDQNPERLKLLSD 228
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET:
D15; 2.40A {Homo sapiens}
Length = 311
Score = 27.9 bits (63), Expect = 6.4
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 14/59 (23%)
Query: 235 VNQLFKLFKF--------KPLVLVDAQCSPDPEFPTVRFPNPEEPSSLDLAVKTADQHG 285
V+QL+ + K + + S + F V+ P+PE+ L+L
Sbjct: 209 VDQLYLIRKTLGDLIPRHQQVF------STNQYFSGVKIPDPEDMEPLELKFPNISYPA 261
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain,
transcription, RNA binding protein; 2.27A {Pseudomonas
aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5
c.55.3.13 PDB: 3bzk_A 2oce_A
Length = 785
Score = 28.3 bits (64), Expect = 6.6
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 14/54 (25%)
Query: 392 AFEEAIGFM---DGTHVLDKDGV-----TAAVRMAELVAYLDSQGKDLHQLLAD 437
FE+A GF+ +G + LD V R+A +D+ L+ D
Sbjct: 550 TFEQAAGFLRVMNGDNPLDASAVHPETYPLVQRIAA------DTERDIRSLIGD 597
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.407
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,335,658
Number of extensions: 466511
Number of successful extensions: 1144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1095
Number of HSP's successfully gapped: 44
Length of query: 459
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 362
Effective length of database: 3,993,456
Effective search space: 1445631072
Effective search space used: 1445631072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)