RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1654
(459 letters)
>d3pmga1 c.84.1.1 (A:1-190) Phosphoglucomutase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 190
Score = 106 bits (265), Expect = 2e-27
Identities = 46/184 (25%), Positives = 73/184 (39%), Gaps = 9/184 (4%)
Query: 29 FLKRLKFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHN 88
K GT+G+R + V S N Q I+S E +E+ ++VG DGR
Sbjct: 10 AYPDQKPGTSGLRKRVKVFQSSTNYAENF--IQSIISTVEPA--QRQEATLVVGGDGRFY 65
Query: 89 SKRFAELTASVFLNGGVK-RVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKE---D 144
K +L + G+ V + + TP ++ IR + GI++TASHNP D
Sbjct: 66 MKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGD 125
Query: 145 NGYKLYDSKGCQIISPIDKQIQEEIMRNLEIED-HIWNIDRIRDQIQPCPLDSVLEKYGQ 203
G K S G I +I + E +D Q L++ + +
Sbjct: 126 FGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTV 185
Query: 204 SVLD 207
++D
Sbjct: 186 EIVD 189
>d1kfia1 c.84.1.1 (A:3-205) Exocytosis-sensitive phosphoprotein,
pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Length = 203
Score = 104 bits (259), Expect = 1e-26
Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 16/164 (9%)
Query: 34 KFGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFA 93
K GT+G+R + +Q+ + + ++ + VG DGR+ +++
Sbjct: 18 KPGTSGLRKKVSEATQPNYLENFVQS----IFNTLRKDELKPKNVLFVGGDGRYFNRQAI 73
Query: 94 ELTASVFLNGGVKRVFLVSR-VCPTPIIAYSIRALNL-----ALGIMITASHNPK----E 143
+ + V + + TP ++ IR +N GI++TASHNP
Sbjct: 74 FSIIRLAYANDISEVHVGQAGLMSTPASSHYIRKVNEEVGNCIGGIILTASHNPGGKEHG 133
Query: 144 DNGYKLYDSKGCQIISPIDKQIQEEIMRNLEIEDHIWNIDRIRD 187
D G K G QI ++ E + + +
Sbjct: 134 DFGIKFNVRTGAPAPEDFTDQI-YTHTTKIK-EYLTVDYEFEKH 175
>d1p5dx1 c.84.1.1 (X:9-154) Phosphomannomutase/phosphoglucomutase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 146
Score = 66.7 bits (162), Expect = 6e-14
Identities = 32/151 (21%), Positives = 62/151 (41%), Gaps = 11/151 (7%)
Query: 35 FGTAGIRGPMGVGFSQMNDVVIIQTGQGILSCAEKHIPNFKESGIIVGYDGRHNSKRFAE 94
F IRG +G G+ I E + VG DGR + +
Sbjct: 6 FRAYDIRGVVGDTL---TAETAYWIGRAI----GSESLARGEPCVAVGRDGRLSGPELVK 58
Query: 95 LTASVFLNGGVKRVFLVSRVCPTPIIAYSIRALNLALGIMITASHNPKEDNGYKLYDSKG 154
+ + PTP++ Y+ L G+M+T SHNP + NG+K+ + G
Sbjct: 59 QLIQGLV--DCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGSHNPPDYNGFKIVVA-G 115
Query: 155 CQIISPIDKQIQEEIMRNLEIEDHIWNIDRI 185
+ + + ++E I +N ++ + +++++
Sbjct: 116 ETLANEQIQALRERIEKN-DLASGVGSVEQV 145
>d1p5dx2 c.84.1.1 (X:155-258) Phosphomannomutase/phosphoglucomutase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 104
Score = 56.6 bits (136), Expect = 8e-11
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 197 VLEKYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSP 256
+L +Y + + D D+ + + +VV+ +GV QL + + C
Sbjct: 1 ILPRYFKQIRD---DIAMAKPMKVVVD--CGNGVAGVIAPQLIEALGCSV---IPLYCEV 52
Query: 257 DPEFPTVRFPNPEEPSSLDLAVKTADQHGSTVILANDPDADRLAVAEK 304
D FP P+P +P +L + + + LA D D DR+ V
Sbjct: 53 DGNFPNHH-PDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTN 99
>d3pmga3 c.84.1.1 (A:304-420) Phosphoglucomutase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 117
Score = 54.7 bits (131), Expect = 5e-10
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 336 NAPLQDYY-------FLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKH 388
N Y+ F S +S L +A A + ET TG+K+ G +
Sbjct: 12 NIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNL-----MDASK 66
Query: 389 VLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADVYDK 441
+ L EE+ G H+ +KDG+ A + ++A + + + +L D + K
Sbjct: 67 LSLCGEESFGTGSD-HIREKDGLWAVLAWLSILAT---RKQSVEDILKDHWHK 115
>d1kfia2 c.84.1.1 (A:206-323) Exocytosis-sensitive phosphoprotein,
pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Length = 118
Score = 45.1 bits (106), Expect = 1e-06
Identities = 25/110 (22%), Positives = 33/110 (30%), Gaps = 6/110 (5%)
Query: 200 KYGQSVLDGAYDLGLNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPE 259
+ Q + D GL + MHGV PY +F C P +
Sbjct: 6 QLMQKLFDFDLLKGLFSNKDFSFRFDGMHGVAGPYAKHIFGTLLGCS-KESLLNCDPSED 64
Query: 260 FPTVRF-PNPEEPSSL----DLAVKTADQHGSTVILANDPDADRLAVAEK 304
F PN L D+ K A D DADR + +
Sbjct: 65 FGGGHPDPNLTYAHDLVELLDIHKKKDVGTVPQFGAACDGDADRNMILGR 114
>d3pmga2 c.84.1.1 (A:191-303) Phosphoglucomutase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 113
Score = 39.0 bits (90), Expect = 1e-04
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 3/91 (3%)
Query: 214 LNEKSQVVITYSAMHGVGYPYVNQLFKLFKFKPLVLVDAQCSPDPEFPTVRFPNPEEPSS 273
L+ +++ I AMHGV PYV ++ P C P +F +
Sbjct: 21 LSGPNRLKIRIDAMHGVVGPYVKKILCEELGAP-ANSAVNCVPLEDFGGH--HPDPNLTY 77
Query: 274 LDLAVKTADQHGSTVILANDPDADRLAVAEK 304
V+T A D D DR + K
Sbjct: 78 AADLVETMKSGEHDFGAAFDGDGDRNMILGK 108
>d1ogla_ a.204.1.1 (A:) Type II deoxyuridine triphosphatase
{Trypanosoma cruzi [TaxId: 5693]}
Length = 270
Score = 35.6 bits (81), Expect = 0.008
Identities = 23/163 (14%), Positives = 53/163 (32%), Gaps = 14/163 (8%)
Query: 292 NDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFLASTVSS 351
++ AD +A+ + G + + + + L+ +F + V+S
Sbjct: 88 DEKGADDVALKSLKEMGFFCRPPAHAKSTAASGQRTNGGDGDGDDELLELMFFPLTEVAS 147
Query: 352 KILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQE------GKHVLLAFEEAIGFMDGTHV 405
+ + K + DL+ K+ L + G+ +G +V
Sbjct: 148 AVATFRNIIQLASIYRFDLITKGLLLAAQDLDFNLVGYYVAKYTLNQIRQLKGYKEGVYV 207
Query: 406 LDKDGVTAAVRMAELVAYLDSQG--------KDLHQLLADVYD 440
++GV + E V + + K ++ V+D
Sbjct: 208 KVREGVEDNELLHECVQSVSVEDVLNEGTYLKAWEKIACSVFD 250
>d2ahob1 a.60.14.1 (B:85-175) Eukaryotic initiation factor 2alpha,
eIF2alpha, domain 2 {Sulfolobus solfataricus [TaxId:
2287]}
Length = 91
Score = 31.6 bits (72), Expect = 0.038
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 352 KILHTIAQAEGLKYDETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGV 411
KIL ++Q L + W LE + + A E+A+ +G +L GV
Sbjct: 21 KILELVSQKLKLSEKDAWEQVAW------KLEAKYGDPITAIEKAV--KEGEKILIDAGV 72
Query: 412 TAAVR 416
Sbjct: 73 PEIWV 77
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 31.3 bits (69), Expect = 0.24
Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 8/125 (6%)
Query: 233 PYVNQLFKLFKFKPLVLVDAQCSPDPEFPT------VRFPNPEEPSSLDLAVKTADQHGS 286
PY NQ K P L+D P+ NP P +D+ + + H S
Sbjct: 5 PY-NQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTS 63
Query: 287 TVI-LANDPDADRLAVAEKAKDGQWKIFTGNELGALFGWWALHRLKSKQPNAPLQDYYFL 345
V + D + LA +++ G+ + L A ++ +
Sbjct: 64 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123
Query: 346 ASTVS 350
+V
Sbjct: 124 IRSVC 128
>d1ekqa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase,
ThiK) {Bacillus subtilis [TaxId: 1423]}
Length = 269
Score = 29.2 bits (65), Expect = 0.99
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 266 PNPEEPSSLDLAVKTADQHGSTVILANDPDA-----DRLAVAEK-AKDGQWKIFTGN--E 317
+ E ++ +A K+A++HG VIL DP R A ++ + GN E
Sbjct: 69 LSKESVEAMIIAGKSANEHGVPVIL--DPVGAGATPFRTESARDIIREVRLAAIRGNAAE 126
Query: 318 LGALFG 323
+ G
Sbjct: 127 IAHTVG 132
>d1w2ya_ a.204.1.1 (A:) Type II deoxyuridine triphosphatase
{Campylobacter jejuni [TaxId: 197]}
Length = 229
Score = 27.4 bits (60), Expect = 3.0
Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 9/120 (7%)
Query: 328 HRLKSKQPNAPLQDYYFLASTVSSKILHTIAQAEGLKYDETLTGFKWMGTKT-YDLEQ-- 384
++ D Y + + + I E L+ + + K +LE
Sbjct: 112 QDFCKEEEYPNEGDIYGILNDIELIIHKCSGFG--FNLGELLSTYFTLAIKCGLNLEILY 169
Query: 385 ---EGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADVYDK 441
GK+VL F + G+ DG++ +G +A+++ +++ L + Y K
Sbjct: 170 KTYIGKNVLNIFRQNNGYKDGSYKKTWNGKEDNEVLAQILEQELDF-DTIYKKLEECYKK 228
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 27.5 bits (59), Expect = 3.4
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 277 AVKTADQHGSTVILANDPDADRLAVAEKAKDGQ---WKIFTGNELGALFG 323
+ K H VI +R+ + D W TG L L G
Sbjct: 8 SPKVLKGHDDHVITCLQFCGNRIVSG--SDDNTLKVWSAVTGKCLRTLVG 55
>d1lm5a_ d.211.2.1 (A:) Desmoplakin intermediate filament-binding
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 196
Score = 26.1 bits (57), Expect = 8.3
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 13/119 (10%)
Query: 345 LASTVSSKILHTIAQAEGLKYDETLTGFKWMGT-KTYDLEQEGKHVLLAFEEAIGFMD-- 401
L VS ++ + GF+ + K + K L +E F++
Sbjct: 56 LQDAVSQGVIDQDMATRLKPAQKAFIGFEGVKGKKKMSAAEAVKEKWLPYEAGQRFLEFQ 115
Query: 402 ---GTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADVYDKGNCITGGFIDPKSKRE 457
G V + + A ++D Q L D PK+K +
Sbjct: 116 YLTGGLVDPEVHGRISTEEAIRKGFID---GRAAQRLQDTSSY----AKILTCPKTKLK 167
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.407
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,769,829
Number of extensions: 85353
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 19
Length of query: 459
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 371
Effective length of database: 1,199,356
Effective search space: 444961076
Effective search space used: 444961076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)