BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16544
(63 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2VJ60|RN19A_PIG E3 ubiquitin-protein ligase RNF19A OS=Sus scrofa GN=RNF19A PE=2
SV=1
Length = 838
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/38 (65%), Positives = 28/38 (73%)
Query: 6 IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
I ILSD L EKYE+FM+RR L +PD RWCP PDCG
Sbjct: 188 IRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225
>sp|P50636|RN19A_MOUSE E3 ubiquitin-protein ligase RNF19A OS=Mus musculus GN=Rnf19a PE=1
SV=2
Length = 840
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/38 (65%), Positives = 28/38 (73%)
Query: 6 IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
I ILSD L EKYE+FM+RR L +PD RWCP PDCG
Sbjct: 188 IRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225
>sp|Q9NV58|RN19A_HUMAN E3 ubiquitin-protein ligase RNF19A OS=Homo sapiens GN=RNF19A PE=1
SV=3
Length = 838
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/38 (65%), Positives = 28/38 (73%)
Query: 6 IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
I ILSD L EKYE+FM+RR L +PD RWCP PDCG
Sbjct: 188 IRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225
>sp|Q08B84|RN19B_XENLA E3 ubiquitin-protein ligase RNF19B OS=Xenopus laevis GN=rnf19b PE=2
SV=2
Length = 687
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 4 QYIHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
Q++ +IL D L KYE+F++RR L+ +PD RWCP PDCG
Sbjct: 149 QHVRAILRDPLLTRKYEEFLLRRCLAADPDCRWCPAPDCG 188
>sp|Q1L8L6|RN19B_DANRE E3 ubiquitin-protein ligase RNF19B OS=Danio rerio GN=rnf19b PE=3
SV=2
Length = 701
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 22/35 (62%), Positives = 27/35 (77%)
Query: 9 ILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
IL D L EKYE+F++RR L+ +PD RWCP PDCG
Sbjct: 166 ILDDPNLMEKYEEFLLRRCLASDPDCRWCPAPDCG 200
>sp|Q6ZMZ0|RN19B_HUMAN E3 ubiquitin-protein ligase RNF19B OS=Homo sapiens GN=RNF19B PE=1
SV=2
Length = 732
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 6 IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
I +L+D L KYE+FM+RR L+ +PD RWCP PDCG
Sbjct: 175 IRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCG 212
>sp|A2A7Q9|RN19B_MOUSE E3 ubiquitin-protein ligase RNF19B OS=Mus musculus GN=Rnf19b PE=1
SV=2
Length = 732
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 6 IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
I +L+D L KYE+FM+RR L+ +PD RWCP PDCG
Sbjct: 172 IRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCG 209
>sp|Q54CX4|Y5521_DICDI Uncharacterized protein DDB_G0292642 OS=Dictyostelium discoideum
GN=DDB_G0292642 PE=4 SV=2
Length = 903
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 9 ILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDC 42
+L+++ + KY+ F + L EP +WCPTPDC
Sbjct: 677 MLTNEKNWLKYQKFSMIASLKTEP-IKWCPTPDC 709
>sp|Q9P3U4|YKX2_SCHPO Uncharacterized RING finger protein C328.02 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.02 PE=3 SV=1
Length = 504
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 1 MKIQYIHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQFLVPKHVLRS 59
+ IQ I +L +++L ++Y + R + RWCP PDC +F + HV ++
Sbjct: 182 VSIQSITKVLDEKSL-DRYHRLLDRSFVDDNDHLRWCPAPDC------EFAIECHVTQA 233
>sp|Q6T486|RBRA_DICDI Probable E3 ubiquitin-protein ligase rbrA OS=Dictyostelium
discoideum GN=rbrA PE=3 SV=1
Length = 520
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 15 LFEKYEDFMVRRVLSIEPDARWCPTPDC 42
+FE++ +F+++ + P +WCP P C
Sbjct: 206 VFERFNNFILKSYVDDNPQVKWCPAPGC 233
>sp|Q8L829|ARI5_ARATH Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana
GN=ARI5 PE=2 SV=1
Length = 552
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 17 EKYEDFMVRRVLSIEPDARWCPTPDCGKVFD 47
EKY + +R + + + +WCP P C D
Sbjct: 201 EKYYRYFLRSYVEVNREMKWCPAPGCEHAID 231
>sp|Q9P2G1|AKIB1_HUMAN Ankyrin repeat and IBR domain-containing protein 1 OS=Homo sapiens
GN=ANKIB1 PE=1 SV=3
Length = 1089
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 3 IQYIHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGK 44
+ I S++S + + ++Y F ++ + P +WCPTP C +
Sbjct: 389 VDIIESVVSKE-MDKRYLQFDIKAFVENNPAIKWCPTPGCDR 429
>sp|Q9SKC3|ARI9_ARATH Probable E3 ubiquitin-protein ligase ARI9 OS=Arabidopsis thaliana
GN=ARI9 PE=2 SV=1
Length = 543
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 10 LSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
+++ + EKY +++R + +WCP+P CG
Sbjct: 190 VTETKVNEKYSRYILRSYVEDGKKIKWCPSPGCG 223
>sp|A5G937|SELA_GEOUR L-seryl-tRNA(Sec) selenium transferase OS=Geobacter uraniireducens
(strain Rf4) GN=selA PE=3 SV=1
Length = 462
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 30 IEPDARWCPTPDCGKVFDGQFLV-PKHVLRSLEP 62
IE R CP P G++F G FL+ P+ +L P
Sbjct: 418 IETTLRGCPVPVIGRIFKGTFLLDPRTILNDDVP 451
>sp|Q68FT3|PYRD2_RAT Pyridine nucleotide-disulfide oxidoreductase domain-containing
protein 2 OS=Rattus norvegicus GN=Pyroxd2 PE=2 SV=1
Length = 581
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 12 DQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQFLVPKHVLRSLEP 62
D F +YE+FM R VL+I+P P D + G L L +L P
Sbjct: 155 DAQAFPRYEEFMKRLVLAIDPLLDAAPV-DIAALQHGSLLQRLRALSTLRP 204
>sp|Q32NS4|ARI1_XENLA E3 ubiquitin-protein ligase arih1 OS=Xenopus laevis GN=arih1 PE=2
SV=1
Length = 529
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 6 IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQF 50
+ +++D + KY+ + + +WCP PDC V Q+
Sbjct: 217 VMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQY 261
>sp|O76924|ARI2_DROME Protein ariadne-2 OS=Drosophila melanogaster GN=ari-2 PE=2 SV=1
Length = 509
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 8 SILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDC 42
++++ + +KY+ F + + P+ R+CP P+C
Sbjct: 213 TLVTRPVMRDKYQQFAFKDYVKSHPELRFCPGPNC 247
>sp|B1H1E4|ARI1_XENTR E3 ubiquitin-protein ligase arih1 OS=Xenopus tropicalis GN=arih1
PE=2 SV=1
Length = 529
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 6 IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQF 50
+ +++D + KY+ + + +WCP PDC V Q+
Sbjct: 217 VMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQY 261
>sp|Q9Z1K5|ARI1_MOUSE E3 ubiquitin-protein ligase ARIH1 OS=Mus musculus GN=Arih1 PE=2
SV=3
Length = 555
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 9 ILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQF 50
+++D + KY+ + + +WCP PDC V Q+
Sbjct: 246 LITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQY 287
>sp|Q9Y4X5|ARI1_HUMAN E3 ubiquitin-protein ligase ARIH1 OS=Homo sapiens GN=ARIH1 PE=1
SV=2
Length = 557
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 9 ILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQF 50
+++D + KY+ + + +WCP PDC V Q+
Sbjct: 248 LITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQY 289
>sp|A2VEA3|ARI1_BOVIN E3 ubiquitin-protein ligase ARIH1 OS=Bos taurus GN=ARIH1 PE=2 SV=1
Length = 555
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 9 ILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQF 50
+++D + KY+ + + +WCP PDC V Q+
Sbjct: 246 LITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQY 287
>sp|Q6PFJ9|ARI1_DANRE E3 ubiquitin-protein ligase arih1 OS=Danio rerio GN=arih1 PE=2 SV=1
Length = 527
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 9 ILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQF 50
+++D + KY+ + + +WCP PDC V Q+
Sbjct: 218 LITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQY 259
>sp|Q6NW85|ARI1L_DANRE E3 ubiquitin-protein ligase arih1l OS=Danio rerio GN=arih1l PE=2
SV=1
Length = 533
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 9 ILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQF 50
+++D + KY+ + + +WCP PDC V Q+
Sbjct: 224 LITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQY 265
>sp|Q84RR0|ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana
GN=ARI7 PE=2 SV=1
Length = 562
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 17 EKYEDFMVRRVLSIEPDARWCPTPDCGKVFD 47
EKY + +R + +WCP P C D
Sbjct: 206 EKYNRYFLRSYIEDNRKMKWCPAPGCDFAID 236
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.142 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,887,305
Number of Sequences: 539616
Number of extensions: 739661
Number of successful extensions: 2083
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2062
Number of HSP's gapped (non-prelim): 25
length of query: 63
length of database: 191,569,459
effective HSP length: 35
effective length of query: 28
effective length of database: 172,682,899
effective search space: 4835121172
effective search space used: 4835121172
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)