Query psy16544
Match_columns 63
No_of_seqs 106 out of 403
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 23:57:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16544.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16544hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jmo_A Parkin; IBR, E3 ligase, 99.4 2.3E-15 7.8E-20 85.8 -6.2 48 9-59 2-49 (80)
2 2ct7_A Ring finger protein 31; 99.0 1.6E-12 5.5E-17 74.5 -4.5 45 12-59 3-47 (86)
3 1wim_A KIAA0161 protein; ring 96.7 0.0007 2.4E-08 38.0 2.0 29 2-31 65-93 (94)
4 2jx1_A Myelin transcription fa 60.9 2.8 9.6E-05 19.5 0.7 8 37-44 4-11 (31)
5 2jyd_A F5 domain of myelin tra 51.1 5.1 0.00017 20.2 0.8 14 31-44 6-19 (46)
6 2l6l_A DNAJ homolog subfamily 48.4 38 0.0013 19.9 4.6 51 6-59 65-137 (155)
7 2fc6_A Nuclear, target of EGR1 46.9 4.6 0.00016 20.8 0.2 13 34-46 29-42 (50)
8 1pxe_A Neural zinc finger tran 44.4 7 0.00024 21.0 0.7 11 34-44 17-27 (63)
9 1d8j_A General transcription f 43.9 14 0.00047 20.7 1.9 35 3-37 34-68 (81)
10 1rmd_A RAG1; V(D)J recombinati 42.6 2.7 9.4E-05 23.5 -1.2 26 34-59 88-113 (116)
11 1dxg_A Desulforedoxin; non-hem 42.5 16 0.00056 16.8 1.8 21 36-58 8-28 (36)
12 2pw4_A Uncharacterized protein 40.0 18 0.00063 22.8 2.3 27 33-59 144-170 (188)
13 2hu9_A MERP, mercuric transpor 38.3 15 0.00052 21.9 1.6 16 32-47 33-48 (130)
14 1gh9_A 8.3 kDa protein (gene M 37.9 24 0.00082 19.0 2.3 18 42-60 9-26 (71)
15 3h0g_I DNA-directed RNA polyme 37.6 16 0.00056 20.9 1.7 17 33-51 3-19 (113)
16 3j20_Y 30S ribosomal protein S 37.4 24 0.00081 17.6 2.1 24 32-58 17-40 (50)
17 3hct_A TNF receptor-associated 35.6 40 0.0014 18.7 3.1 33 24-58 74-106 (118)
18 3h0n_A Uncharacterized protein 35.2 25 0.00084 21.9 2.3 27 33-59 144-170 (188)
19 1tqe_X Histone deacetylase 9; 35.0 29 0.00097 15.4 1.8 17 10-26 6-22 (26)
20 3pwf_A Rubrerythrin; non heme 33.1 74 0.0025 19.3 4.2 29 16-48 117-150 (170)
21 1twf_I B12.6, DNA-directed RNA 32.6 21 0.00073 20.7 1.6 25 33-59 3-30 (122)
22 3f27_D Transcription factor SO 31.6 58 0.002 16.8 3.4 28 13-40 50-80 (83)
23 1rpb_A Tricyclic peptide RP 71 30.7 12 0.00042 16.4 0.2 9 40-48 11-19 (26)
24 1wjq_A KIAA1798 protein; MBT d 30.3 16 0.00053 21.2 0.7 9 35-43 95-103 (107)
25 2lnm_A Protein TIC 40, chlorop 29.5 54 0.0018 16.6 2.7 17 6-22 37-53 (62)
26 2lef_A LEF-1 HMG, protein (lym 29.1 67 0.0023 16.8 3.5 30 12-41 45-77 (86)
27 1ag7_A Conotoxin GS; neurotoxi 28.8 43 0.0015 15.4 2.0 19 36-55 8-26 (34)
28 3qt1_I DNA-directed RNA polyme 27.7 23 0.00078 21.1 1.1 19 31-51 21-39 (133)
29 3u2b_C Transcription factor SO 26.3 72 0.0025 16.2 3.1 27 13-39 46-75 (79)
30 3htk_C E3 SUMO-protein ligase 25.8 23 0.00077 23.7 0.9 30 19-49 204-233 (267)
31 2cs8_A KIAA0535 protein; ST18, 24.5 23 0.00079 20.8 0.7 9 36-44 11-19 (108)
32 1r8o_B STI, kunitz trypsin inh 24.0 31 0.001 18.5 1.1 11 32-44 29-39 (71)
33 1hry_A Human SRY; DNA, DNA-bin 23.6 82 0.0028 15.9 2.9 26 13-38 48-76 (76)
34 1i11_A Transcription factor SO 23.4 63 0.0021 16.7 2.3 27 14-40 49-78 (81)
35 4euw_A Transcription factor SO 23.1 83 0.0028 17.3 2.9 28 13-40 73-103 (106)
36 2llw_A Heat shock protein STI1 21.1 56 0.0019 17.3 1.8 15 8-22 47-61 (71)
37 1qqp_1 FMDV, protein (genome p 20.3 26 0.0009 22.7 0.4 7 35-41 185-191 (213)
38 1e91_A Paired amphipathic heli 20.1 65 0.0022 17.5 2.0 20 4-23 60-80 (85)
No 1
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.35 E-value=2.3e-15 Score=85.75 Aligned_cols=48 Identities=15% Similarity=0.351 Sum_probs=42.0
Q ss_pred hcCChHHHHHHHHHHHHhHHhhCCCeeEeCCCCCcceEEccCCCceeeEec
Q psy16544 9 ILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQFLVPKHVLRS 59 (63)
Q Consensus 9 ll~d~~~~~kY~~~~~~~~V~~~~~~rWCP~p~C~~av~~~~~~~~~V~c~ 59 (63)
+|+ +++++||++|++++||+.++ ++|||+|+|+++|+.++ +.+.|+|+
T Consensus 2 ~l~-~~~~~rY~~~~~e~~v~~~~-~~~CP~p~C~~~v~~~~-~~~~v~C~ 49 (80)
T 2jmo_A 2 HMG-EEQYNRYQQYGAEECVLQMG-GVLCPRPGCGAGLLPEP-DQRKVTCE 49 (80)
T ss_dssp CCC-CCCCCSCCCSSSCCSSCCCS-SCCCCSSSCCCCCCCCS-CTTSBCTT
T ss_pred CCC-HHHHHHHHHHHHHHHhhhCC-cEECCCCCCCcccEECC-CCCcCCCC
Confidence 353 56899999999999999997 99999999999999886 56779994
No 2
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.05 E-value=1.6e-12 Score=74.51 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHHHhHHhhCCCeeEeCCCCCcceEEccCCCceeeEec
Q psy16544 12 DQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQFLVPKHVLRS 59 (63)
Q Consensus 12 d~~~~~kY~~~~~~~~V~~~~~~rWCP~p~C~~av~~~~~~~~~V~c~ 59 (63)
+++++++|++++++++|+.+++++||| +|+++++.++. ...|+|+
T Consensus 3 s~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~~-~~~v~C~ 47 (86)
T 2ct7_A 3 SGSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYERE-QLEATCP 47 (86)
T ss_dssp CCCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCCS-CSCEECT
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecCC-CCceEeC
Confidence 456889999999999999999999999 99999998765 5679996
No 3
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.73 E-value=0.0007 Score=37.98 Aligned_cols=29 Identities=10% Similarity=0.282 Sum_probs=25.3
Q ss_pred ChhHHhhhcCChHHHHHHHHHHHHhHHhhC
Q psy16544 2 KIQYIHSILSDQALFEKYEDFMVRRVLSIE 31 (63)
Q Consensus 2 ~~~~I~~ll~d~~~~~kY~~~~~~~~V~~~ 31 (63)
++++|..+|. +++++||+++++++||+++
T Consensus 65 ~~~~i~~ll~-~~~~~ky~~~~~~~~v~~~ 93 (94)
T 1wim_A 65 QENEIECMVA-AEIMQRYKKLQFERSGPSS 93 (94)
T ss_dssp CHHHHHHHSC-HHHHHHHHHHHHHSSCSSC
T ss_pred CHHHHHHHCC-HHHHHHHHHHHHHhhhccC
Confidence 5778999985 7899999999999999865
No 4
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=60.95 E-value=2.8 Score=19.53 Aligned_cols=8 Identities=63% Similarity=1.655 Sum_probs=7.0
Q ss_pred eCCCCCcc
Q psy16544 37 CPTPDCGK 44 (63)
Q Consensus 37 CP~p~C~~ 44 (63)
||.|+|.-
T Consensus 4 CPtpGC~g 11 (31)
T 2jx1_A 4 CPTPGCDG 11 (31)
T ss_dssp CSCTTCCS
T ss_pred CCCCCccc
Confidence 99999974
No 5
>2jyd_A F5 domain of myelin transcription factor 1; zinc-finger, MYT1, alternative splicing, developmental protein, differentiation, DNA-binding; NMR {Mus musculus}
Probab=51.10 E-value=5.1 Score=20.24 Aligned_cols=14 Identities=36% Similarity=0.817 Sum_probs=9.8
Q ss_pred CCCeeEeCCCCCcc
Q psy16544 31 EPDARWCPTPDCGK 44 (63)
Q Consensus 31 ~~~~rWCP~p~C~~ 44 (63)
+..-.=||.|+|.-
T Consensus 6 ~~~~~~CPtpGC~G 19 (46)
T 2jyd_A 6 HSADLKCPTPGCDG 19 (46)
T ss_dssp TTBTTSCSCSSCCS
T ss_pred cccCCcCCCCCcCc
Confidence 44444599999974
No 6
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=48.43 E-value=38 Score=19.85 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=32.5
Q ss_pred HhhhcCChHHHHHHHHHHHHhHHhhC-------------------CCeeEeCCCCCcceEEccCCCc---eeeEec
Q psy16544 6 IHSILSDQALFEKYEDFMVRRVLSIE-------------------PDARWCPTPDCGKVFDGQFLVP---KHVLRS 59 (63)
Q Consensus 6 I~~ll~d~~~~~kY~~~~~~~~V~~~-------------------~~~rWCP~p~C~~av~~~~~~~---~~V~c~ 59 (63)
..+.|.|+...+.|...+-...+... ....+|| ||........+- ..|.|+
T Consensus 65 Ay~~L~dp~~R~~Yd~~~~~~~~~~~~~~~~~~~~~~m~~~e~~~~f~~~Cr---CG~~f~i~~~~l~~~~~v~C~ 137 (155)
T 2l6l_A 65 AWKILGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCR---CGGKYSVSKDEAEEVSLISCD 137 (155)
T ss_dssp HHHHSSSHHHHCHHHHHHHHHHHHTTCSSSEEEETTTSEEETTTTEEEEECS---SSCEEEEETTHHHHCCEEECS
T ss_pred HHHHcCCHHHHHHHHHHcchhhccccccccceeeHHHhccccCCcEEEEcCC---CCCeEEecHHHhCCCCEEECC
Confidence 35678888888889877654433311 1236786 888777765544 367665
No 7
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=46.85 E-value=4.6 Score=20.76 Aligned_cols=13 Identities=38% Similarity=1.224 Sum_probs=10.0
Q ss_pred eeEeC-CCCCcceE
Q psy16544 34 ARWCP-TPDCGKVF 46 (63)
Q Consensus 34 ~rWCP-~p~C~~av 46 (63)
.-||| ++.|...=
T Consensus 29 yGwCp~G~~Cp~SH 42 (50)
T 2fc6_A 29 YGWCPLGPQCPQSH 42 (50)
T ss_dssp TCCCTTGGGCSSBC
T ss_pred cccCCCCCCCCccc
Confidence 46999 89998653
No 8
>1pxe_A Neural zinc finger transcription factor 1; CCHHC zinc binding domain, neural zinc finger factor-1, DNA binding domain, metal binding protein; NMR {Rattus norvegicus} SCOP: g.73.1.1
Probab=44.41 E-value=7 Score=20.95 Aligned_cols=11 Identities=45% Similarity=1.093 Sum_probs=8.6
Q ss_pred eeEeCCCCCcc
Q psy16544 34 ARWCPTPDCGK 44 (63)
Q Consensus 34 ~rWCP~p~C~~ 44 (63)
..=||.|||.-
T Consensus 17 ~~~CPtpGC~G 27 (63)
T 1pxe_A 17 ESKCPTPGCDG 27 (63)
T ss_dssp CCCSCCSSCCC
T ss_pred cccCCCCCcCc
Confidence 34599999973
No 9
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=43.88 E-value=14 Score=20.65 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=26.1
Q ss_pred hhHHhhhcCChHHHHHHHHHHHHhHHhhCCCeeEe
Q psy16544 3 IQYIHSILSDQALFEKYEDFMVRRVLSIEPDARWC 37 (63)
Q Consensus 3 ~~~I~~ll~d~~~~~kY~~~~~~~~V~~~~~~rWC 37 (63)
-++|...++-.++-.++.+.+....+..||.+.|=
T Consensus 34 L~EILde~~~~d~~~~~k~wL~~eaL~~npkI~~~ 68 (81)
T 1d8j_A 34 LDEILDETQHLDIGLKQKQWLMTEALVNNPKIEVI 68 (81)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHTTHHHHCTTEEEC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHhhcCCceEEe
Confidence 35666665534455688999888888999999995
No 10
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=42.56 E-value=2.7 Score=23.52 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=17.8
Q ss_pred eeEeCCCCCcceEEccCCCceeeEec
Q psy16544 34 ARWCPTPDCGKVFDGQFLVPKHVLRS 59 (63)
Q Consensus 34 ~rWCP~p~C~~av~~~~~~~~~V~c~ 59 (63)
...||..||+..+....-....-.|.
T Consensus 88 ~v~C~~~gC~~~~~~~~~~~H~~~C~ 113 (116)
T 1rmd_A 88 MVKCPAQDCNEEVSLEKYNHHVSSHK 113 (116)
T ss_dssp EEECCSTTCCCEEEHHHHHHHHHTSC
T ss_pred cCCCCCCCCcchhhHhHHHHHHHHhh
Confidence 45799999999888765544444443
No 11
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=42.49 E-value=16 Score=16.82 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=14.3
Q ss_pred EeCCCCCcceEEccCCCceeeEe
Q psy16544 36 WCPTPDCGKVFDGQFLVPKHVLR 58 (63)
Q Consensus 36 WCP~p~C~~av~~~~~~~~~V~c 58 (63)
=|+ .|+++|.+.....-.+.|
T Consensus 8 ~C~--~CGnivev~~~g~~~l~C 28 (36)
T 1dxg_A 8 KCE--LCGQVVKVLEEGGGTLVC 28 (36)
T ss_dssp ECT--TTCCEEEEEECCSSCEEE
T ss_pred EcC--CCCcEEEEEeCCCcCEEe
Confidence 465 599999986555555555
No 12
>2pw4_A Uncharacterized protein DUF1470; YP_510353.1, protein of unknown function DUF1470, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Jannaschia SP} PDB: 3h0n_A*
Probab=40.00 E-value=18 Score=22.79 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=21.2
Q ss_pred CeeEeCCCCCcceEEccCCCceeeEec
Q psy16544 33 DARWCPTPDCGKVFDGQFLVPKHVLRS 59 (63)
Q Consensus 33 ~~rWCP~p~C~~av~~~~~~~~~V~c~ 59 (63)
.++-|.+|+|..++.-.+...+.--||
T Consensus 144 rlr~C~~~~C~~~f~D~sr~~~rrwCs 170 (188)
T 2pw4_A 144 RFGICNAHRCDRVYFDTSRNGTRQYCS 170 (188)
T ss_dssp GEEECCSTTCCCEEECCSSSCCCCCSS
T ss_pred cccCCCCCCCCEEEecCCCCCCCCccC
Confidence 599999999999988766555555555
No 13
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=38.30 E-value=15 Score=21.94 Aligned_cols=16 Identities=25% Similarity=0.546 Sum_probs=13.0
Q ss_pred CCeeEeCCCCCcceEE
Q psy16544 32 PDARWCPTPDCGKVFD 47 (63)
Q Consensus 32 ~~~rWCP~p~C~~av~ 47 (63)
.++.+|+.|+|+-+--
T Consensus 33 ~~y~~C~~~~C~VvYf 48 (130)
T 2hu9_A 33 GDFYFCSLESCEVVYF 48 (130)
T ss_dssp SCEEECCCTTCSEEEE
T ss_pred CCEEeECCCCCCEEEE
Confidence 4699999999996644
No 14
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=37.95 E-value=24 Score=18.96 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=7.9
Q ss_pred CcceEEccCCCceeeEecC
Q psy16544 42 CGKVFDGQFLVPKHVLRSL 60 (63)
Q Consensus 42 C~~av~~~~~~~~~V~c~~ 60 (63)
|+.+...+. .++..+|.|
T Consensus 9 C~~~~~~~~-~~kT~~C~C 26 (71)
T 1gh9_A 9 CGRALYSRE-GAKTRKCVC 26 (71)
T ss_dssp TSCCEEEET-TCSEEEETT
T ss_pred CCCEEEEcC-CCcEEECCC
Confidence 555544433 334444443
No 15
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=37.62 E-value=16 Score=20.88 Aligned_cols=17 Identities=12% Similarity=0.389 Sum_probs=12.3
Q ss_pred CeeEeCCCCCcceEEccCC
Q psy16544 33 DARWCPTPDCGKVFDGQFL 51 (63)
Q Consensus 33 ~~rWCP~p~C~~av~~~~~ 51 (63)
.|+|||. |++.+....+
T Consensus 3 ~m~FCp~--Cgn~L~~~~~ 19 (113)
T 3h0g_I 3 NFQYCIE--CNNMLYPRED 19 (113)
T ss_dssp CCCCCSS--SCCCCEECCC
T ss_pred cceeCcC--CCCEeeEccc
Confidence 4788974 8888777554
No 16
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.39 E-value=24 Score=17.57 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=13.8
Q ss_pred CCeeEeCCCCCcceEEccCCCceeeEe
Q psy16544 32 PDARWCPTPDCGKVFDGQFLVPKHVLR 58 (63)
Q Consensus 32 ~~~rWCP~p~C~~av~~~~~~~~~V~c 58 (63)
...++||. |+..+...+.. .+..|
T Consensus 17 ~~~k~CP~--CG~~~fm~~~~-~R~~C 40 (50)
T 3j20_Y 17 RKNKFCPR--CGPGVFMADHG-DRWAC 40 (50)
T ss_dssp CSSEECSS--SCSSCEEEECS-SEEEC
T ss_pred EecccCCC--CCCceEEecCC-CeEEC
Confidence 45799995 98754433333 23444
No 17
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=35.62 E-value=40 Score=18.65 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=22.2
Q ss_pred HHhHHhhCCCeeEeCCCCCcceEEccCCCceeeEe
Q psy16544 24 VRRVLSIEPDARWCPTPDCGKVFDGQFLVPKHVLR 58 (63)
Q Consensus 24 ~~~~V~~~~~~rWCP~p~C~~av~~~~~~~~~V~c 58 (63)
+++.|+ .....||..||+..+....-....-.|
T Consensus 74 l~~~i~--~l~v~C~n~gC~~~~~~~~l~~H~~~c 106 (118)
T 3hct_A 74 AKREIL--SLMVKCPNEGCLHKMELRHLEDHQAHC 106 (118)
T ss_dssp HHHHHH--TSEEECSSTTCCCEEEGGGSGGGTSSS
T ss_pred HHHHHc--cceeECCCCCCCCEEeeHHHHHHHHHc
Confidence 344444 356799999999999887665444444
No 18
>3h0n_A Uncharacterized protein DUF1470; treble CLEF zinc finger, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.45A {Jannaschia SP}
Probab=35.17 E-value=25 Score=21.91 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=20.3
Q ss_pred CeeEeCCCCCcceEEccCCCceeeEec
Q psy16544 33 DARWCPTPDCGKVFDGQFLVPKHVLRS 59 (63)
Q Consensus 33 ~~rWCP~p~C~~av~~~~~~~~~V~c~ 59 (63)
.++-|.+|+|..++.=.+...+.--||
T Consensus 144 rlr~C~~~~C~~~f~D~sr~~~RrwCs 170 (188)
T 3h0n_A 144 RFGICNAHRCDRVYFDTSRNGTRQYCS 170 (188)
T ss_dssp GEEECCSTTCCCEEECCSSSCCCCCSS
T ss_pred hcccCCCCCCCEEEeeCCCCCCCCccC
Confidence 589999999999988665555554554
No 19
>1tqe_X Histone deacetylase 9; MEF2, HDAC, CO-repressor, transcription, transcription/protein binding/DNA complex; 2.70A {Mus musculus}
Probab=35.03 E-value=29 Score=15.36 Aligned_cols=17 Identities=12% Similarity=0.376 Sum_probs=13.2
Q ss_pred cCChHHHHHHHHHHHHh
Q psy16544 10 LSDQALFEKYEDFMVRR 26 (63)
Q Consensus 10 l~d~~~~~kY~~~~~~~ 26 (63)
+++.++.+|.++|+++.
T Consensus 6 ~ASteVKqkLqefll~K 22 (26)
T 1tqe_X 6 GASTEVKQKLQEFLLSK 22 (26)
T ss_dssp CSCSSHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHhh
Confidence 44567899999998864
No 20
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=33.14 E-value=74 Score=19.34 Aligned_cols=29 Identities=24% Similarity=0.419 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhHHhhCCC----eeE-eCCCCCcceEEc
Q psy16544 16 FEKYEDFMVRRVLSIEPD----ARW-CPTPDCGKVFDG 48 (63)
Q Consensus 16 ~~kY~~~~~~~~V~~~~~----~rW-CP~p~C~~av~~ 48 (63)
.++|++++-+ |+.... ..| ||. ||++...
T Consensus 117 ~~~~~~~l~~--l~~~~~~~~~~~~~C~~--CG~i~~~ 150 (170)
T 3pwf_A 117 AELYRKAKEK--AEKGEDIEIKKVYICPI--CGYTAVD 150 (170)
T ss_dssp HHHHHHHHHH--HTTTCCCCCSCEEECTT--TCCEEES
T ss_pred HHHHHHHHHH--HhcCCcCCCCCeeEeCC--CCCeeCC
Confidence 3456555432 233333 367 875 9999884
No 21
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=32.63 E-value=21 Score=20.65 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=15.9
Q ss_pred CeeEeCCCCCcceEEccC---CCceeeEec
Q psy16544 33 DARWCPTPDCGKVFDGQF---LVPKHVLRS 59 (63)
Q Consensus 33 ~~rWCP~p~C~~av~~~~---~~~~~V~c~ 59 (63)
.++|||. |++.+.... ...-.+.|.
T Consensus 3 ~~~FCp~--CgnlL~~~~~~~~~~~~~~C~ 30 (122)
T 1twf_I 3 TFRFCRD--CNNMLYPREDKENNRLLFECR 30 (122)
T ss_dssp CCCBCSS--SCCBCEEEEETTTTEEEEECS
T ss_pred CCCcccc--cCccCcccccCcCCCCEEECC
Confidence 4788975 998877654 223455564
No 22
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=31.65 E-value=58 Score=16.82 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=21.1
Q ss_pred hHHHHHHHHH---HHHhHHhhCCCeeEeCCC
Q psy16544 13 QALFEKYEDF---MVRRVLSIEPDARWCPTP 40 (63)
Q Consensus 13 ~~~~~kY~~~---~~~~~V~~~~~~rWCP~p 40 (63)
++..+.|++. .-..|-..+++.+|+|..
T Consensus 50 ~~eK~~y~~~A~~~k~~y~~~~~~Yky~P~~ 80 (83)
T 3f27_D 50 LAEKRPFVEEAERLRVQHMQDHPNYKYRPRR 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCeeCCcc
Confidence 5567778665 345778889999999974
No 23
>1rpb_A Tricyclic peptide RP 71955; HIV replication inhibitor, replication inhibitor; NMR {Actinomycete SP9440} SCOP: j.24.1.1 PDB: 1rpc_A
Probab=30.73 E-value=12 Score=16.39 Aligned_cols=9 Identities=22% Similarity=0.435 Sum_probs=7.1
Q ss_pred CCCcceEEc
Q psy16544 40 PDCGKVFDG 48 (63)
Q Consensus 40 p~C~~av~~ 48 (63)
.||++||.+
T Consensus 11 agcgyaivc 19 (26)
T 1rpb_A 11 AGCGYAVVC 19 (26)
T ss_dssp SSSCBBSSC
T ss_pred CCCceEEEE
Confidence 689999765
No 24
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=30.34 E-value=16 Score=21.22 Aligned_cols=9 Identities=44% Similarity=0.881 Sum_probs=7.4
Q ss_pred eEeCCCCCc
Q psy16544 35 RWCPTPDCG 43 (63)
Q Consensus 35 rWCP~p~C~ 43 (63)
.-||.|||.
T Consensus 95 ~~cpt~gc~ 103 (107)
T 1wjq_A 95 GGCSTPGSG 103 (107)
T ss_dssp CSCCCCCCC
T ss_pred CCCCCCCcc
Confidence 369999996
No 25
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=29.47 E-value=54 Score=16.60 Aligned_cols=17 Identities=12% Similarity=0.384 Sum_probs=7.9
Q ss_pred HhhhcCChHHHHHHHHH
Q psy16544 6 IHSILSDQALFEKYEDF 22 (63)
Q Consensus 6 I~~ll~d~~~~~kY~~~ 22 (63)
+.++..|+++....+++
T Consensus 37 ~~~~~~dP~v~~~~~~L 53 (62)
T 2lnm_A 37 IMKYQNDKEVMDVFNKI 53 (62)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHH
Confidence 34444445444444444
No 26
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=29.10 E-value=67 Score=16.79 Aligned_cols=30 Identities=10% Similarity=0.027 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHH---HHhHHhhCCCeeEeCCCC
Q psy16544 12 DQALFEKYEDFM---VRRVLSIEPDARWCPTPD 41 (63)
Q Consensus 12 d~~~~~kY~~~~---~~~~V~~~~~~rWCP~p~ 41 (63)
+++..+.|++.. -..|.+.+|+.++-|+.+
T Consensus 45 s~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~~~ 77 (86)
T 2lef_A 45 SREEQAKYYELARKERQLHMQLYPGWSARDNYG 77 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSTTCCSCSSTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC
Confidence 356677887664 447888999999999754
No 27
>1ag7_A Conotoxin GS; neurotoxin, MU-conotoxin, sodium channel blocker, cystine knot motif; HET: HYP CGU; NMR {Conus geographus} SCOP: g.3.6.1
Probab=28.85 E-value=43 Score=15.37 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=14.3
Q ss_pred EeCCCCCcceEEccCCCcee
Q psy16544 36 WCPTPDCGKVFDGQFLVPKH 55 (63)
Q Consensus 36 WCP~p~C~~av~~~~~~~~~ 55 (63)
-|| |.|-+.+++....|+.
T Consensus 8 rcp-pqccmglrcgrgnpqk 26 (34)
T 1ag7_A 8 RCP-PQCCMGLRCGRGNPQK 26 (34)
T ss_dssp CSS-SCBCTTEEEECSSSCE
T ss_pred CCC-hhhceeeeccCCCchh
Confidence 477 7888888887777664
No 28
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=27.74 E-value=23 Score=21.10 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=14.2
Q ss_pred CCCeeEeCCCCCcceEEccCC
Q psy16544 31 EPDARWCPTPDCGKVFDGQFL 51 (63)
Q Consensus 31 ~~~~rWCP~p~C~~av~~~~~ 51 (63)
...|+|||. |++......+
T Consensus 21 ~~~~~FCPe--CgNmL~pked 39 (133)
T 3qt1_I 21 MTTFRFCRD--CNNMLYPRED 39 (133)
T ss_dssp -CCCCBCTT--TCCBCBCCBC
T ss_pred ccCCeeCCC--CCCEeeECcc
Confidence 456899985 9999877654
No 29
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=26.29 E-value=72 Score=16.21 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=20.7
Q ss_pred hHHHHHHHHHH---HHhHHhhCCCeeEeCC
Q psy16544 13 QALFEKYEDFM---VRRVLSIEPDARWCPT 39 (63)
Q Consensus 13 ~~~~~kY~~~~---~~~~V~~~~~~rWCP~ 39 (63)
++..+.|++.. -..|...+|+.+|+|.
T Consensus 46 ~~eK~~y~~~A~~~k~~y~~~~p~Yky~Pr 75 (79)
T 3u2b_C 46 DSDKIPFIQEAERLRLKHMADYPDYKYRPR 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCeeCCC
Confidence 45677776553 4578888999999997
No 30
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=25.79 E-value=23 Score=23.72 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=22.4
Q ss_pred HHHHHHHhHHhhCCCeeEeCCCCCcceEEcc
Q psy16544 19 YEDFMVRRVLSIEPDARWCPTPDCGKVFDGQ 49 (63)
Q Consensus 19 Y~~~~~~~~V~~~~~~rWCP~p~C~~av~~~ 49 (63)
|.+-.+..+++.+.. .-||..||...+...
T Consensus 204 FcR~cI~~~~~~~~~-~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 204 FDRDGIQNYLQGYTT-RDCPQAACSQVVSMR 233 (267)
T ss_dssp EEHHHHHHHSTTCSC-EECSGGGCSCEECGG
T ss_pred ccHHHHHHHHHhCCC-CCCCcccccCcCchh
Confidence 777778888876543 469999999877543
No 31
>2cs8_A KIAA0535 protein; ST18, zinc-finger, C2HC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.54 E-value=23 Score=20.76 Aligned_cols=9 Identities=33% Similarity=0.874 Sum_probs=7.4
Q ss_pred EeCCCCCcc
Q psy16544 36 WCPTPDCGK 44 (63)
Q Consensus 36 WCP~p~C~~ 44 (63)
=||.|+|.-
T Consensus 11 ~CPtpGC~G 19 (108)
T 2cs8_A 11 KCPVIGCDG 19 (108)
T ss_dssp CCCSTTCCS
T ss_pred cCCCCCccc
Confidence 499999973
No 32
>1r8o_B STI, kunitz trypsin inhibitor; kunitz (STI) trypsin inhibitor, beta-trefoil fold, hydrolase inhibitor; 1.83A {Copaifera langsdorffii} SCOP: b.42.4.1
Probab=24.02 E-value=31 Score=18.51 Aligned_cols=11 Identities=9% Similarity=0.235 Sum_probs=8.1
Q ss_pred CCeeEeCCCCCcc
Q psy16544 32 PDARWCPTPDCGK 44 (63)
Q Consensus 32 ~~~rWCP~p~C~~ 44 (63)
-.+.|||. |..
T Consensus 29 Yklv~CP~--c~~ 39 (71)
T 1r8o_B 29 YKDVYSSS--KGR 39 (71)
T ss_dssp EEEEEECT--TSC
T ss_pred eEEEECCC--CCc
Confidence 45899998 743
No 33
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=23.60 E-value=82 Score=15.90 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=18.2
Q ss_pred hHHHHHHHHH---HHHhHHhhCCCeeEeC
Q psy16544 13 QALFEKYEDF---MVRRVLSIEPDARWCP 38 (63)
Q Consensus 13 ~~~~~kY~~~---~~~~~V~~~~~~rWCP 38 (63)
++..+.|++. .-..|-..+++.+|.|
T Consensus 48 ~~eK~~y~~~A~~~k~~y~~~~~~Yky~P 76 (76)
T 1hry_A 48 EAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 5567778665 3447778899998877
No 34
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=23.37 E-value=63 Score=16.67 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=14.5
Q ss_pred HHHHHHHHH---HHHhHHhhCCCeeEeCCC
Q psy16544 14 ALFEKYEDF---MVRRVLSIEPDARWCPTP 40 (63)
Q Consensus 14 ~~~~kY~~~---~~~~~V~~~~~~rWCP~p 40 (63)
+..+.|.+. .-..|.+.+|+.+|.|..
T Consensus 49 eeK~~y~~~A~~~k~~~~~~~p~Yky~pr~ 78 (81)
T 1i11_A 49 LEKQPYYEEQARLSKQHLEKYPDYKYKPRP 78 (81)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCSCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCeeccCC
Confidence 456667543 345788899999999863
No 35
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=23.09 E-value=83 Score=17.34 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=18.3
Q ss_pred hHHHHHHHHH---HHHhHHhhCCCeeEeCCC
Q psy16544 13 QALFEKYEDF---MVRRVLSIEPDARWCPTP 40 (63)
Q Consensus 13 ~~~~~kY~~~---~~~~~V~~~~~~rWCP~p 40 (63)
++..+.|++. ....|-..+|..+|+|..
T Consensus 73 ~eeK~~Y~~~A~~~k~~y~~e~~~Yky~Prr 103 (106)
T 4euw_A 73 ESEKRPFVEEAERLRVQHKKDHPDYKYQPRR 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCC
Confidence 5667788765 355788889999999963
No 36
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=21.05 E-value=56 Score=17.32 Aligned_cols=15 Identities=13% Similarity=0.426 Sum_probs=6.0
Q ss_pred hhcCChHHHHHHHHH
Q psy16544 8 SILSDQALFEKYEDF 22 (63)
Q Consensus 8 ~ll~d~~~~~kY~~~ 22 (63)
++..+|++..+.++|
T Consensus 47 k~~~nP~v~~~i~kl 61 (71)
T 2llw_A 47 EHMKNPEVFKKIQTL 61 (71)
T ss_dssp HHHHSHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHH
Confidence 333334444444443
No 37
>1qqp_1 FMDV, protein (genome polyprotein); heparan sulphate, virus-receptor interactions/protein carbohydrate interactions; HET: IDX SGN IDS; 1.90A {Foot-and-mouth disease virus} SCOP: b.121.4.1 PDB: 1bbt_1 1fod_1
Probab=20.31 E-value=26 Score=22.69 Aligned_cols=7 Identities=43% Similarity=1.255 Sum_probs=5.7
Q ss_pred eEeCCCC
Q psy16544 35 RWCPTPD 41 (63)
Q Consensus 35 rWCP~p~ 41 (63)
.|||+|-
T Consensus 185 ~wcPRP~ 191 (213)
T 1qqp_1 185 TYCPRPL 191 (213)
T ss_dssp EEEECCC
T ss_pred ccCCCCc
Confidence 5999975
No 38
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=20.08 E-value=65 Score=17.49 Aligned_cols=20 Identities=10% Similarity=0.484 Sum_probs=13.5
Q ss_pred hHHhhhcCC-hHHHHHHHHHH
Q psy16544 4 QYIHSILSD-QALFEKYEDFM 23 (63)
Q Consensus 4 ~~I~~ll~d-~~~~~kY~~~~ 23 (63)
++|..|+.+ ++|+.-|..|+
T Consensus 60 ~~V~~Lf~~hpDLl~~F~~FL 80 (85)
T 1e91_A 60 TEVANLFRGQEDLLSEFGQFL 80 (85)
T ss_dssp HHHHHHTSSCHHHHHHHHHHS
T ss_pred HHHHHHHccCHHHHHHHHHHC
Confidence 456677764 77777777664
Done!