RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16544
(63 letters)
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 28.5 bits (63), Expect = 0.016
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 18 KYEDFMVRRVLSIEPDARWCPTPDCGKVF 46
+ + VL +P WC C F
Sbjct: 2 LFHKKLTEGVLMRDPKFLWC--AQCSFGF 28
>d1o57a2 c.61.1.1 (A:75-276) Pur operon repressor (PurR),
C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Length = 202
Score = 25.0 bits (54), Expect = 0.53
Identities = 6/38 (15%), Positives = 9/38 (23%)
Query: 5 YIHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDC 42
Y+ IL ++ K E D
Sbjct: 30 YLTDILGKPSVLSKVGKLFASVFAEREIDVVMTVATKG 67
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 23.5 bits (50), Expect = 1.7
Identities = 2/17 (11%), Positives = 7/17 (41%)
Query: 10 LSDQALFEKYEDFMVRR 26
+ + ++Y+ R
Sbjct: 72 MVAAEIMQRYKKLQFER 88
>d1szwa_ d.265.1.4 (A:) tRNA pseudouridine synthase TruD
{Escherichia coli [TaxId: 562]}
Length = 341
Score = 23.4 bits (50), Expect = 2.0
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 17 EKYEDFMVRRVLSIEPDAR 35
EDF+V L EPD
Sbjct: 22 ANPEDFVVVEDLGFEPDGE 40
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 21.9 bits (47), Expect = 2.3
Identities = 5/10 (50%), Positives = 5/10 (50%)
Query: 37 CPTPDCGKVF 46
CP C K F
Sbjct: 5 CPFDGCNKKF 14
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 21.9 bits (47), Expect = 3.1
Identities = 4/10 (40%), Positives = 5/10 (50%)
Query: 37 CPTPDCGKVF 46
CP C + F
Sbjct: 5 CPVESCDRRF 14
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 21.5 bits (46), Expect = 3.3
Identities = 5/10 (50%), Positives = 5/10 (50%)
Query: 37 CPTPDCGKVF 46
C P C K F
Sbjct: 6 CDHPGCDKAF 15
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 21.5 bits (46), Expect = 3.5
Identities = 3/10 (30%), Positives = 4/10 (40%)
Query: 37 CPTPDCGKVF 46
C C K +
Sbjct: 5 CTFEGCRKSY 14
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 21.6 bits (46), Expect = 4.0
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 37 CPTPDCGKVF 46
CP P CGK F
Sbjct: 4 CPEPACGKSF 13
>d2pw4a1 d.380.1.1 (A:1-184) Uncharacterized protein Jann2411
{Jannaschia sp. ccs1 [TaxId: 290400]}
Length = 184
Score = 22.6 bits (48), Expect = 4.1
Identities = 3/12 (25%), Positives = 5/12 (41%)
Query: 35 RWCPTPDCGKVF 46
C C +V+
Sbjct: 145 GICNAHRCDRVY 156
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 21.2 bits (45), Expect = 4.4
Identities = 5/10 (50%), Positives = 5/10 (50%)
Query: 37 CPTPDCGKVF 46
C CGK F
Sbjct: 5 CTFEGCGKRF 14
>d2diia1 a.240.1.1 (A:8-55) TFIIH basal transcription factor
complex p62 subunit, BTF2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 48
Score = 21.4 bits (45), Expect = 5.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 11 SDQALFEKYEDFMVRRVLSIE 31
D LF+ Y+D +V +V+S E
Sbjct: 18 EDPVLFQLYKDLVVSQVISAE 38
>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio
cholerae [TaxId: 666]}
Length = 139
Score = 21.8 bits (45), Expect = 7.7
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 18 KYEDFMVRRVLSIEPDA 34
K ED M R ++
Sbjct: 3 KVEDMMTRHPHTLLRTH 19
>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 122
Score = 21.8 bits (45), Expect = 8.3
Identities = 3/17 (17%), Positives = 8/17 (47%)
Query: 18 KYEDFMVRRVLSIEPDA 34
+ + M + ++I A
Sbjct: 2 RVKTIMTQNPVTITLPA 18
>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId:
5661]}
Length = 236
Score = 22.0 bits (46), Expect = 8.4
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 6 IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
+ SI + DF+V+R ++ P D
Sbjct: 44 VSSITESPETLKAIRDFLVQRYRAMSPAPTHILGFDAR 81
>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 142
Score = 21.8 bits (45), Expect = 9.0
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 15 LFEKYEDFMVRRVLSIEPDA 34
+F + E M ++ +
Sbjct: 1 MFMRVEKIMNSNFKTVNWNT 20
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.142 0.454
Gapped
Lambda K H
0.267 0.0424 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 254,623
Number of extensions: 9296
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 19
Length of query: 63
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 31
Effective length of database: 1,968,236
Effective search space: 61015316
Effective search space used: 61015316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)