BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16545
(600 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 222 bits (565), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 119/255 (46%), Positives = 163/255 (63%), Gaps = 20/255 (7%)
Query: 1 MINKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWS 60
+I+ F+N G G S+ + LR + +TG+ V + E DI+ A L +K
Sbjct: 31 VIDNFHNAFRG-GGSLPESLRRVQELTGRSVEF-----EEMDILDQGALQRLFKK----- 79
Query: 61 ARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTV 120
+ VIHFA +KAVGES+Q+PL YY+ NL TI LLE+MK+HGV LVFSSS TV
Sbjct: 80 ----YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATV 135
Query: 121 YGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSG 180
YG PQ+LP+ E HPTG N YGK+K FIEEM++DL +A K WN++ LRYFNP GAH SG
Sbjct: 136 YGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLLRYFNPTGAHASG 195
Query: 181 RIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGTGKVVAIDNFVNSVHIGDTP 240
IGEDP N+MPY++QVAIG + VFG DY+TEDGTG + ++++ V +
Sbjct: 196 CIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG----VRDYIHVVDLAKGH 251
Query: 241 -CSIRAIEQFTGKKV 254
++R +++ G ++
Sbjct: 252 IAALRKLKEQCGCRI 266
Score = 158 bits (400), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 145/274 (52%), Gaps = 37/274 (13%)
Query: 225 VAIDNFVNSVHIGDT-PCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFA 283
V IDNF N+ G + P S+R +++ TG+ V+F D++D+ L +F K+ VIHFA
Sbjct: 30 VVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFA 89
Query: 284 AVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHP 343
+KAVGES+Q+PL YY+ NL TI LLE+MK+HGV LVFSSS TVYG PQ+LP+ E HP
Sbjct: 90 GLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHP 149
Query: 344 TGNIKNFY------------NLGTGQGTSVLQLLRTFE----RVTG----------NKPV 377
TG N Y +L T + LLR F +G N +
Sbjct: 150 TGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLLRYFNPTGAHASGCIGEDPQGIPNNLM 209
Query: 378 PYIFYNLGTGQGTSVLQLLRTFERVTGNKPVPYI-FYNLGTGQGTSVLQLLRTFERVTGK 436
PY+ + G+ ++ ++ G YI +L G + LR + G
Sbjct: 210 PYV-SQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGH----IAALRKLKEQCGC 264
Query: 437 PVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPY 470
+ YNLGTG G SVLQ+++ E+ +GK +PY
Sbjct: 265 RI----YNLGTGTGYSVLQMVQAMEKASGKKIPY 294
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 47/66 (71%)
Query: 4 KFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARC 63
+ YNLGTG G SVLQ+++ E+ +GK +PY V ARREGD+ + YAN LAQ+ELGW+A
Sbjct: 265 RIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAAL 324
Query: 64 THDIDC 69
D C
Sbjct: 325 GLDRMC 330
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 43/57 (75%)
Query: 532 FYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSA 588
YNLGTG G SVLQ+++ E+ +GK +PY V ARREGD+ + YAN LAQ ELGW+A
Sbjct: 266 IYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTA 322
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/255 (46%), Positives = 163/255 (63%), Gaps = 20/255 (7%)
Query: 1 MINKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWS 60
+I+ F+N G G S+ + LR + +TG+ V + E DI+ A L +K
Sbjct: 31 VIDNFHNAFRG-GGSLPESLRRVQELTGRSVEF-----EEMDILDQGALQRLFKK----- 79
Query: 61 ARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTV 120
+ VIHFA +KA+GES+Q+PL YY+ NL TI LLE+MK+HGV LVFSSS TV
Sbjct: 80 ----YSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATV 135
Query: 121 YGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSG 180
YG PQ+LP+ E HPTG N YGK+K FIEEM++DL +A K WN++ LRYFNP GAH SG
Sbjct: 136 YGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLLRYFNPTGAHASG 195
Query: 181 RIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGTGKVVAIDNFVNSVHIGDTP 240
IGEDP N+MPY++QVAIG + VFG DY+TEDGTG + ++++ V +
Sbjct: 196 CIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG----VRDYIHVVDLAKGH 251
Query: 241 -CSIRAIEQFTGKKV 254
++R +++ G ++
Sbjct: 252 IAALRKLKEQCGCRI 266
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/274 (37%), Positives = 145/274 (52%), Gaps = 37/274 (13%)
Query: 225 VAIDNFVNSVHIGDT-PCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFA 283
V IDNF N+ G + P S+R +++ TG+ V+F D++D+ L +F K+ VIHFA
Sbjct: 30 VVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFA 89
Query: 284 AVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHP 343
+KA+GES+Q+PL YY+ NL TI LLE+MK+HGV LVFSSS TVYG PQ+LP+ E HP
Sbjct: 90 GLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHP 149
Query: 344 TGNIKNFY------------NLGTGQGTSVLQLLRTFE----RVTG----------NKPV 377
TG N Y +L T + LLR F +G N +
Sbjct: 150 TGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLLRYFNPTGAHASGCIGEDPQGIPNNLM 209
Query: 378 PYIFYNLGTGQGTSVLQLLRTFERVTGNKPVPYI-FYNLGTGQGTSVLQLLRTFERVTGK 436
PY+ + G+ ++ ++ G YI +L G + LR + G
Sbjct: 210 PYV-SQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGH----IAALRKLKEQCGC 264
Query: 437 PVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPY 470
+ YNLGTG G SVLQ+++ E+ +GK +PY
Sbjct: 265 RI----YNLGTGTGYSVLQMVQAMEKASGKKIPY 294
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 47/66 (71%)
Query: 4 KFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARC 63
+ YNLGTG G SVLQ+++ E+ +GK +PY V ARREGD+ + YAN LAQ+ELGW+A
Sbjct: 265 RIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAAL 324
Query: 64 THDIDC 69
D C
Sbjct: 325 GLDRMC 330
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 43/57 (75%)
Query: 532 FYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSA 588
YNLGTG G SVLQ+++ E+ +GK +PY V ARREGD+ + YAN LAQ ELGW+A
Sbjct: 266 IYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTA 322
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/255 (46%), Positives = 162/255 (63%), Gaps = 20/255 (7%)
Query: 1 MINKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWS 60
+I+ F+N G G S+ + LR + +TG+ V + E DI+ A L +K
Sbjct: 31 VIDNFHNAFRG-GGSLPESLRRVQELTGRSVEF-----EEMDILDQGALQRLFKK----- 79
Query: 61 ARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTV 120
+ VIHFA +KAVGES+Q+PL YY+ NL TI LLE+MK+HGV LVFSSS TV
Sbjct: 80 ----YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATV 135
Query: 121 YGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSG 180
YG PQ+LP+ E HPTG N YGK+K FIEEM++DL +A K WN + LRYFNP GAH SG
Sbjct: 136 YGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASG 195
Query: 181 RIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGTGKVVAIDNFVNSVHIGDTP 240
IGEDP N+MPY++QVAIG + VFG DY+TEDGTG + ++++ V +
Sbjct: 196 CIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG----VRDYIHVVDLAKGH 251
Query: 241 -CSIRAIEQFTGKKV 254
++R +++ G ++
Sbjct: 252 IAALRKLKEQCGCRI 266
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 144/274 (52%), Gaps = 37/274 (13%)
Query: 225 VAIDNFVNSVHIGDT-PCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFA 283
V IDNF N+ G + P S+R +++ TG+ V+F D++D+ L +F K+ VIHFA
Sbjct: 30 VVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFA 89
Query: 284 AVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHP 343
+KAVGES+Q+PL YY+ NL TI LLE+MK+HGV LVFSSS TVYG PQ+LP+ E HP
Sbjct: 90 GLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHP 149
Query: 344 TGNIKNFY------------NLGTGQGTSVLQLLRTFE----RVTG----------NKPV 377
TG N Y +L T LLR F +G N +
Sbjct: 150 TGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLM 209
Query: 378 PYIFYNLGTGQGTSVLQLLRTFERVTGNKPVPYI-FYNLGTGQGTSVLQLLRTFERVTGK 436
PY+ + G+ ++ ++ G YI +L G + LR + G
Sbjct: 210 PYV-SQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGH----IAALRKLKEQCGC 264
Query: 437 PVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPY 470
+ YNLGTG G SVLQ+++ E+ +GK +PY
Sbjct: 265 RI----YNLGTGTGYSVLQMVQAMEKASGKKIPY 294
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 47/66 (71%)
Query: 4 KFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARC 63
+ YNLGTG G SVLQ+++ E+ +GK +PY V ARREGD+ + YAN LAQ+ELGW+A
Sbjct: 265 RIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAAL 324
Query: 64 THDIDC 69
D C
Sbjct: 325 GLDRMC 330
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 43/57 (75%)
Query: 532 FYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSA 588
YNLGTG G SVLQ+++ E+ +GK +PY V ARREGD+ + YAN LAQ ELGW+A
Sbjct: 266 IYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTA 322
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 143/239 (59%), Gaps = 20/239 (8%)
Query: 14 TSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHF 73
S +L ER+ GK ++ EGDI + T++ H ID VIHF
Sbjct: 35 NSKRSVLPVIERLGGKHPTFV-----EGDIRNEALMTEILHD---------HAIDTVIHF 80
Query: 74 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 133
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSSS TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESF 140
Query: 134 PTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDPTKSFTNI 193
PTG ++ YGK+K +E++L DL KA +W+I LRYFNPVGAHPSG +GEDP N+
Sbjct: 141 PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNL 200
Query: 194 MPYLAQVAIGSKPHFTVFGADYETEDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGK 252
MPY+AQVA+G + +FG DY TEDGTG + ++++ + + D + A+E+ K
Sbjct: 201 MPYIAQVAVGRRDSLAIFGNDYPTEDGTG----VRDYIHVMDLADG--HVVAMEKLANK 253
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 156/371 (42%), Gaps = 77/371 (20%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
V+ +DN NS + IE+ GK F D+ ++ + EI H ID VIHF
Sbjct: 26 DVIILDNLCNSKR-----SVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSSS TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESF 140
Query: 343 PTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERV 402
PTG ++ Y G S L V I +L Q + LLR F V
Sbjct: 141 PTGTPQSPY------GKSKLM-------------VEQILTDLQKAQPDWSIALLRYFNPV 181
Query: 403 TGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 462
G P +G + + + +PYI + G+ S+
Sbjct: 182 -GAHP---------SGD------MGEDPQGIPNNLMPYIA-QVAVGRRDSLA-------- 216
Query: 463 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 522
+ G P T GT V + + G V E+
Sbjct: 217 IFGNDYP-------TEDGTGVRDYIHVMDLADGHVV--------------------AMEK 249
Query: 523 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQR 582
+ KP +I YNLG G G SVL ++ F + GKPV Y RREGD+ + +A+ A R
Sbjct: 250 LANKPGVHI-YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADR 308
Query: 583 ELGWSARCTVK 593
EL W T+
Sbjct: 309 ELNWRVTRTLD 319
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 5 FYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCT 64
YNLG G G SVL ++ F + GKPV Y RREGD+ + +A+ A +EL W R T
Sbjct: 258 IYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNW--RVT 315
Query: 65 HDID 68
+D
Sbjct: 316 RTLD 319
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 143/239 (59%), Gaps = 20/239 (8%)
Query: 14 TSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHF 73
S +L ER+ GK ++ EGDI + T++ H ID VIHF
Sbjct: 35 NSKRSVLPVIERLGGKHPTFV-----EGDIRNEALMTEILHD---------HAIDTVIHF 80
Query: 74 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 133
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSSS TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESF 140
Query: 134 PTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDPTKSFTNI 193
PTG ++ YGK+K +E++L DL KA +W+I LRYFNPVGAHPSG +GEDP N+
Sbjct: 141 PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNL 200
Query: 194 MPYLAQVAIGSKPHFTVFGADYETEDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGK 252
MPY+AQVA+G + +FG DY TEDGTG + ++++ + + D + A+E+ K
Sbjct: 201 MPYIAQVAVGRRDSLAIFGNDYPTEDGTG----VRDYIHVMDLADG--HVVAMEKLANK 253
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 156/371 (42%), Gaps = 77/371 (20%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
V+ +DN NS + IE+ GK F D+ ++ + EI H ID VIHF
Sbjct: 26 DVIILDNLCNSKR-----SVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSSS TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESF 140
Query: 343 PTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERV 402
PTG ++ Y G S L V I +L Q + LLR F V
Sbjct: 141 PTGTPQSPY------GKSKLM-------------VEQILTDLQKAQPDWSIALLRYFNPV 181
Query: 403 TGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 462
G P +G + + + +PYI + G+ S+
Sbjct: 182 -GAHP---------SGD------MGEDPQGIPNNLMPYIA-QVAVGRRDSLA-------- 216
Query: 463 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 522
+ G P T GT V + + G V E+
Sbjct: 217 IFGNDYP-------TEDGTGVRDYIHVMDLADGHVV--------------------AMEK 249
Query: 523 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQR 582
+ KP +I YNLG G G SVL ++ F + GKPV Y RREGD+ + +A+ A R
Sbjct: 250 LANKPGVHI-YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADR 308
Query: 583 ELGWSARCTVK 593
EL W T+
Sbjct: 309 ELNWRVTRTLD 319
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 5 FYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCT 64
YNLG G G SVL ++ F + GKPV Y RREGD+ + +A+ A +EL W R T
Sbjct: 258 IYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNW--RVT 315
Query: 65 HDID 68
+D
Sbjct: 316 RTLD 319
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 143/239 (59%), Gaps = 20/239 (8%)
Query: 14 TSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHF 73
S +L ER+ GK ++ EGDI + T++ H ID VIHF
Sbjct: 35 NSKRSVLPVIERLGGKHPTFV-----EGDIRNEALMTEILHD---------HAIDTVIHF 80
Query: 74 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 133
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSSS TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESF 140
Query: 134 PTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDPTKSFTNI 193
PTG ++ YGK+K +E++L DL KA +W+I LRYFNPVGAHPSG +GEDP N+
Sbjct: 141 PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNL 200
Query: 194 MPYLAQVAIGSKPHFTVFGADYETEDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGK 252
MPY+AQVA+G + +FG DY TEDGTG + ++++ + + D + A+E+ K
Sbjct: 201 MPYIAQVAVGRRDSLAIFGNDYPTEDGTG----VRDYIHVMDLADG--HVVAMEKLANK 253
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 154/364 (42%), Gaps = 77/364 (21%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
V+ +DN NS + IE+ GK F D+ ++ + EI H ID VIHF
Sbjct: 26 DVIILDNLCNSKR-----SVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSSS TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESF 140
Query: 343 PTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERV 402
PTG ++ Y G S L V I +L Q + LLR F V
Sbjct: 141 PTGTPQSPY------GKSKLM-------------VEQILTDLQKAQPDWSIALLRYFNPV 181
Query: 403 TGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 462
G P +G + + + +PYI + G+ S+
Sbjct: 182 -GAHP---------SGD------MGEDPQGIPNNLMPYIA-QVAVGRRDSLA-------- 216
Query: 463 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 522
+ G P T GT V + + G V E+
Sbjct: 217 IFGNDYP-------TEDGTGVRDYIHVMDLADGHVV--------------------AMEK 249
Query: 523 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQR 582
+ KP +I YNLG G G SVL ++ F + GKPV Y RREGD+ + +A+ A R
Sbjct: 250 LANKPGVHI-YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPACWADASKADR 308
Query: 583 ELGW 586
EL W
Sbjct: 309 ELNW 312
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 5 FYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCT 64
YNLG G G SVL ++ F + GKPV Y RREGD+ + +A+ A +EL W R T
Sbjct: 258 IYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPACWADASKADRELNW--RVT 315
Query: 65 HDID 68
+D
Sbjct: 316 RTLD 319
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 143/239 (59%), Gaps = 20/239 (8%)
Query: 14 TSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHF 73
S +L ER+ GK ++ EGDI + T++ H ID VIHF
Sbjct: 35 NSKRSVLPVIERLGGKHPTFV-----EGDIRNEALMTEILHD---------HAIDTVIHF 80
Query: 74 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 133
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSS+ TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSAATVYGDQPKIPYVESF 140
Query: 134 PTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDPTKSFTNI 193
PTG ++ YGK+K +E++L DL KA +W+I LRYFNPVGAHPSG +GEDP N+
Sbjct: 141 PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNL 200
Query: 194 MPYLAQVAIGSKPHFTVFGADYETEDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGK 252
MPY+AQVA+G + +FG DY TEDGTG + ++++ + + D + A+E+ K
Sbjct: 201 MPYIAQVAVGRRDSLAIFGNDYPTEDGTG----VRDYIHVMDLADG--HVVAMEKLANK 253
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 156/371 (42%), Gaps = 77/371 (20%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
V+ +DN NS + IE+ GK F D+ ++ + EI H ID VIHF
Sbjct: 26 DVIILDNLCNSKR-----SVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSS+ TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSAATVYGDQPKIPYVESF 140
Query: 343 PTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERV 402
PTG ++ Y G S L V I +L Q + LLR F V
Sbjct: 141 PTGTPQSPY------GKSKLM-------------VEQILTDLQKAQPDWSIALLRYFNPV 181
Query: 403 TGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 462
G P +G + + + +PYI + G+ S+
Sbjct: 182 -GAHP---------SGD------MGEDPQGIPNNLMPYIA-QVAVGRRDSLA-------- 216
Query: 463 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 522
+ G P T GT V + + G V E+
Sbjct: 217 IFGNDYP-------TEDGTGVRDYIHVMDLADGHVV--------------------AMEK 249
Query: 523 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQR 582
+ KP +I YNLG G G SVL ++ F + GKPV Y RREGD+ + +A+ A R
Sbjct: 250 LANKPGVHI-YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADR 308
Query: 583 ELGWSARCTVK 593
EL W T+
Sbjct: 309 ELNWRVTRTLD 319
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 5 FYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCT 64
YNLG G G SVL ++ F + GKPV Y RREGD+ + +A+ A +EL W R T
Sbjct: 258 IYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNW--RVT 315
Query: 65 HDID 68
+D
Sbjct: 316 RTLD 319
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 143/239 (59%), Gaps = 20/239 (8%)
Query: 14 TSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHF 73
S +L ER+ GK ++ EGDI + T++ H ID VIHF
Sbjct: 35 NSKRSVLPVIERLGGKHPTFV-----EGDIRNEALMTEILHD---------HAIDTVIHF 80
Query: 74 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 133
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSS+ TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSAATVYGDNPKIPYVESF 140
Query: 134 PTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDPTKSFTNI 193
PTG ++ YGK+K +E++L DL KA +W+I LRYFNPVGAHPSG +GEDP N+
Sbjct: 141 PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNL 200
Query: 194 MPYLAQVAIGSKPHFTVFGADYETEDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGK 252
MPY+AQVA+G + +FG DY TEDGTG + ++++ + + D + A+E+ K
Sbjct: 201 MPYIAQVAVGRRDSLAIFGNDYPTEDGTG----VRDYIHVMDLADG--HVVAMEKLANK 253
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 156/371 (42%), Gaps = 77/371 (20%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
V+ +DN NS + IE+ GK F D+ ++ + EI H ID VIHF
Sbjct: 26 DVIILDNLCNSKR-----SVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSS+ TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSAATVYGDNPKIPYVESF 140
Query: 343 PTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERV 402
PTG ++ Y G S L V I +L Q + LLR F V
Sbjct: 141 PTGTPQSPY------GKSKLM-------------VEQILTDLQKAQPDWSIALLRYFNPV 181
Query: 403 TGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 462
G P +G + + + +PYI + G+ S+
Sbjct: 182 -GAHP---------SGD------MGEDPQGIPNNLMPYIA-QVAVGRRDSLA-------- 216
Query: 463 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 522
+ G P T GT V + + G V E+
Sbjct: 217 IFGNDYP-------TEDGTGVRDYIHVMDLADGHVV--------------------AMEK 249
Query: 523 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQR 582
+ KP +I YNLG G G SVL ++ F + GKPV Y RREGD+ + +A+ A R
Sbjct: 250 LANKPGVHI-YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADR 308
Query: 583 ELGWSARCTVK 593
EL W T+
Sbjct: 309 ELNWRVTRTLD 319
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 5 FYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCT 64
YNLG G G SVL ++ F + GKPV Y RREGD+ + +A+ A +EL W R T
Sbjct: 258 IYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNW--RVT 315
Query: 65 HDID 68
+D
Sbjct: 316 RTLD 319
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 186 bits (473), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 143/239 (59%), Gaps = 20/239 (8%)
Query: 14 TSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHF 73
S +L ER+ GK ++ EGDI + T++ H ID VIHF
Sbjct: 35 NSKRSVLPVIERLGGKHPTFV-----EGDIRNEALMTEILHD---------HAIDTVIHF 80
Query: 74 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 133
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSS+ TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSTATVYGDNPKIPYVESF 140
Query: 134 PTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDPTKSFTNI 193
PTG ++ YGK+K +E++L DL KA +W+I LRYFNPVGAHPSG +GEDP N+
Sbjct: 141 PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNL 200
Query: 194 MPYLAQVAIGSKPHFTVFGADYETEDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGK 252
MPY+AQVA+G + +FG DY TEDGTG + ++++ + + D + A+E+ K
Sbjct: 201 MPYIAQVAVGRRDSLAIFGNDYPTEDGTG----VRDYIHVMDLADG--HVVAMEKLANK 253
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 156/371 (42%), Gaps = 77/371 (20%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
V+ +DN NS + IE+ GK F D+ ++ + EI H ID VIHF
Sbjct: 26 DVIILDNLCNSKR-----SVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSS+ TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSTATVYGDNPKIPYVESF 140
Query: 343 PTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERV 402
PTG ++ Y G S L V I +L Q + LLR F V
Sbjct: 141 PTGTPQSPY------GKSKLM-------------VEQILTDLQKAQPDWSIALLRYFNPV 181
Query: 403 TGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 462
G P +G + + + +PYI + G+ S+
Sbjct: 182 -GAHP---------SGD------MGEDPQGIPNNLMPYIA-QVAVGRRDSLA-------- 216
Query: 463 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 522
+ G P T GT V + + G V E+
Sbjct: 217 IFGNDYP-------TEDGTGVRDYIHVMDLADGHVV--------------------AMEK 249
Query: 523 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQR 582
+ KP +I YNLG G G SVL ++ F + GKPV Y RREGD+ + +A+ A R
Sbjct: 250 LANKPGVHI-YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADR 308
Query: 583 ELGWSARCTVK 593
EL W T+
Sbjct: 309 ELNWRVTRTLD 319
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 5 FYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCT 64
YNLG G G SVL ++ F + GKPV Y RREGD+ + +A+ A +EL W R T
Sbjct: 258 IYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNW--RVT 315
Query: 65 HDID 68
+D
Sbjct: 316 RTLD 319
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 143/239 (59%), Gaps = 20/239 (8%)
Query: 14 TSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHF 73
S +L ER+ GK ++ EGDI + T++ H ID VIHF
Sbjct: 35 NSKRSVLPVIERLGGKHPTFV-----EGDIRNEALMTEILHD---------HAIDTVIHF 80
Query: 74 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 133
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSSS TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESF 140
Query: 134 PTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDPTKSFTNI 193
PTG ++ +GK+K +E++L DL KA +W+I LRYFNPVGAHPSG +GEDP N+
Sbjct: 141 PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNL 200
Query: 194 MPYLAQVAIGSKPHFTVFGADYETEDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGK 252
MPY+AQVA+G + +FG DY TEDGTG + ++++ + + D + A+E+ K
Sbjct: 201 MPYIAQVAVGRRDSLAIFGNDYPTEDGTG----VRDYIHVMDLADG--HVVAMEKLANK 253
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/371 (28%), Positives = 153/371 (41%), Gaps = 77/371 (20%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
V+ +DN NS + IE+ GK F D+ ++ + EI H ID VIHF
Sbjct: 26 DVIILDNLCNSKR-----SVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSSS TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESF 140
Query: 343 PTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERV 402
PTG ++ + G S L V I +L Q + LLR F V
Sbjct: 141 PTGTPQSPF------GKSKLM-------------VEQILTDLQKAQPDWSIALLRYFNPV 181
Query: 403 TGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 462
G P +G + + + +PYI + G+ S+ +
Sbjct: 182 -GAHP---------SGD------MGEDPQGIPNNLMPYIA-QVAVGRRDSLAIFGNDYPT 224
Query: 463 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 522
G V + + G V E++ KP +I YNLG G G SVL ++ F +
Sbjct: 225 EDGTGVRDYIHVMDLADGHVV-----AMEKLANKPGVHI-YNLGAGVGNSVLDVVNAFSK 278
Query: 523 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQR 582
GKPV Y F RREGD+ + +A+ A R
Sbjct: 279 ACGKPVNYHF------------------------------APRREGDLPAYWADASKADR 308
Query: 583 ELGWSARCTVK 593
EL W T+
Sbjct: 309 ELNWRVTRTLD 319
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 5 FYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCT 64
YNLG G G SVL ++ F + GKPV Y RREGD+ + +A+ A +EL W R T
Sbjct: 258 IYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNW--RVT 315
Query: 65 HDID 68
+D
Sbjct: 316 RTLD 319
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 185 bits (470), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 143/239 (59%), Gaps = 20/239 (8%)
Query: 14 TSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHF 73
S +L ER+ GK ++ EGDI + T++ H ID VIHF
Sbjct: 35 NSKRSVLPVIERLGGKHPTFV-----EGDIRNEALMTEILHD---------HAIDTVIHF 80
Query: 74 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 133
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSS+ TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSAATVYGDQPKIPYVESF 140
Query: 134 PTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDPTKSFTNI 193
PTG ++ +GK+K +E++L DL KA +W+I LRYFNPVGAHPSG +GEDP N+
Sbjct: 141 PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNL 200
Query: 194 MPYLAQVAIGSKPHFTVFGADYETEDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGK 252
MPY+AQVA+G + +FG DY TEDGTG + ++++ + + D + A+E+ K
Sbjct: 201 MPYIAQVAVGRRDSLAIFGNDYPTEDGTG----VRDYIHVMDLADG--HVVAMEKLANK 253
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 106/371 (28%), Positives = 153/371 (41%), Gaps = 77/371 (20%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
V+ +DN NS + IE+ GK F D+ ++ + EI H ID VIHF
Sbjct: 26 DVIILDNLCNSKR-----SVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSS+ TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSAATVYGDQPKIPYVESF 140
Query: 343 PTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERV 402
PTG ++ + G S L V I +L Q + LLR F V
Sbjct: 141 PTGTPQSPF------GKSKLM-------------VEQILTDLQKAQPDWSIALLRYFNPV 181
Query: 403 TGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 462
G P +G + + + +PYI + G+ S+ +
Sbjct: 182 -GAHP---------SGD------MGEDPQGIPNNLMPYIA-QVAVGRRDSLAIFGNDYPT 224
Query: 463 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 522
G V + + G V E++ KP +I YNLG G G SVL ++ F +
Sbjct: 225 EDGTGVRDYIHVMDLADGHVV-----AMEKLANKPGVHI-YNLGAGVGNSVLDVVNAFSK 278
Query: 523 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQR 582
GKPV Y F RREGD+ + +A+ A R
Sbjct: 279 ACGKPVNYHF------------------------------APRREGDLPAYWADASKADR 308
Query: 583 ELGWSARCTVK 593
EL W T+
Sbjct: 309 ELNWRVTRTLD 319
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 5 FYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCT 64
YNLG G G SVL ++ F + GKPV Y RREGD+ + +A+ A +EL W R T
Sbjct: 258 IYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNW--RVT 315
Query: 65 HDID 68
+D
Sbjct: 316 RTLD 319
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 185 bits (470), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 143/239 (59%), Gaps = 20/239 (8%)
Query: 14 TSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHF 73
S +L ER+ GK ++ EGDI + T++ H ID VIHF
Sbjct: 35 NSKRSVLPVIERLGGKHPTFV-----EGDIRNEALMTEILHD---------HAIDTVIHF 80
Query: 74 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 133
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSS+ TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSAATVYGDNPKIPYVESF 140
Query: 134 PTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDPTKSFTNI 193
PTG ++ +GK+K +E++L DL KA +W+I LRYFNPVGAHPSG +GEDP N+
Sbjct: 141 PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNL 200
Query: 194 MPYLAQVAIGSKPHFTVFGADYETEDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGK 252
MPY+AQVA+G + +FG DY TEDGTG + ++++ + + D + A+E+ K
Sbjct: 201 MPYIAQVAVGRRDSLAIFGNDYPTEDGTG----VRDYIHVMDLADG--HVVAMEKLANK 253
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 106/371 (28%), Positives = 153/371 (41%), Gaps = 77/371 (20%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
V+ +DN NS + IE+ GK F D+ ++ + EI H ID VIHF
Sbjct: 26 DVIILDNLCNSKR-----SVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSS+ TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSAATVYGDNPKIPYVESF 140
Query: 343 PTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERV 402
PTG ++ + G S L V I +L Q + LLR F V
Sbjct: 141 PTGTPQSPF------GKSKLM-------------VEQILTDLQKAQPDWSIALLRYFNPV 181
Query: 403 TGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 462
G P +G + + + +PYI + G+ S+ +
Sbjct: 182 -GAHP---------SGD------MGEDPQGIPNNLMPYIA-QVAVGRRDSLAIFGNDYPT 224
Query: 463 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 522
G V + + G V E++ KP +I YNLG G G SVL ++ F +
Sbjct: 225 EDGTGVRDYIHVMDLADGHVV-----AMEKLANKPGVHI-YNLGAGVGNSVLDVVNAFSK 278
Query: 523 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQR 582
GKPV Y F RREGD+ + +A+ A R
Sbjct: 279 ACGKPVNYHF------------------------------APRREGDLPAYWADASKADR 308
Query: 583 ELGWSARCTVK 593
EL W T+
Sbjct: 309 ELNWRVTRTLD 319
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 5 FYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCT 64
YNLG G G SVL ++ F + GKPV Y RREGD+ + +A+ A +EL W R T
Sbjct: 258 IYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNW--RVT 315
Query: 65 HDID 68
+D
Sbjct: 316 RTLD 319
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 142/239 (59%), Gaps = 20/239 (8%)
Query: 14 TSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHF 73
S +L ER+ GK ++ EGDI + T++ H ID VIHF
Sbjct: 35 NSKRSVLPVIERLGGKHPTFV-----EGDIRNEALMTEILHD---------HAIDTVIHF 80
Query: 74 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 133
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSS TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSVATVYGDNPKIPYVESF 140
Query: 134 PTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDPTKSFTNI 193
PTG ++ YGK+K +E++L DL KA +W+I LRYFNPVGAHPSG +GEDP N+
Sbjct: 141 PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNL 200
Query: 194 MPYLAQVAIGSKPHFTVFGADYETEDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGK 252
MPY+AQVA+G + +FG DY TEDGTG + ++++ + + D + A+E+ K
Sbjct: 201 MPYIAQVAVGRRDSLAIFGNDYPTEDGTG----VRDYIHVMDLADG--HVVAMEKLANK 253
Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 155/371 (41%), Gaps = 77/371 (20%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
V+ +DN NS + IE+ GK F D+ ++ + EI H ID VIHF
Sbjct: 26 DVIILDNLCNSKR-----SVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSS TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSVATVYGDNPKIPYVESF 140
Query: 343 PTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERV 402
PTG ++ Y G S L V I +L Q + LLR F V
Sbjct: 141 PTGTPQSPY------GKSKLM-------------VEQILTDLQKAQPDWSIALLRYFNPV 181
Query: 403 TGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 462
G P +G + + + +PYI + G+ S+
Sbjct: 182 -GAHP---------SGD------MGEDPQGIPNNLMPYIA-QVAVGRRDSLA-------- 216
Query: 463 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 522
+ G P T GT V + + G V E+
Sbjct: 217 IFGNDYP-------TEDGTGVRDYIHVMDLADGHVV--------------------AMEK 249
Query: 523 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQR 582
+ KP +I YNLG G G SVL ++ F + GKPV Y RREGD+ + +A+ A R
Sbjct: 250 LANKPGVHI-YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADR 308
Query: 583 ELGWSARCTVK 593
EL W T+
Sbjct: 309 ELNWRVTRTLD 319
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 5 FYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCT 64
YNLG G G SVL ++ F + GKPV Y RREGD+ + +A+ A +EL W R T
Sbjct: 258 IYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNW--RVT 315
Query: 65 HDID 68
+D
Sbjct: 316 RTLD 319
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 168 bits (426), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 110/162 (67%), Gaps = 6/162 (3%)
Query: 65 HDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGE- 123
+ ID VIHFA +KAVGES Q PL YY NN++ T+ LLE+M+ + V + VFSSS TVYG+
Sbjct: 83 YKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDA 142
Query: 124 ---PQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKE-WNIISLRYFNPVGAHPS 179
P +PI E+ P G N YG TK+ IE +L DL + K+ W LRYFNP+GAHPS
Sbjct: 143 TRFPNMIPIPEECPLGPT-NPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPS 201
Query: 180 GRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGT 221
G IGEDP N++PY+AQVA+G + +FG DY++ DGT
Sbjct: 202 GLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGT 243
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 136/284 (47%), Gaps = 42/284 (14%)
Query: 218 EDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDID 277
E+G VVA DN NS + S+ +E T + FY DL D+ L ++F ++ ID
Sbjct: 33 ENGYDCVVA-DNLSNSTYD-----SVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKID 86
Query: 278 CVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGE----P 333
VIHFA +KAVGES Q PL YY NN++ T+ LLE+M+ + V + VFSSS TVYG+ P
Sbjct: 87 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFP 146
Query: 334 QFLPITEDHPTG----------NIKNFYN--LGTGQGTSVLQLLRTFERVTG-------- 373
+PI E+ P G I+N N + + + +LR F +
Sbjct: 147 NMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGE 206
Query: 374 ------NKPVPYIFYNLGTGQGTSVLQLLRTFERVTGNKPVPYI-FYNLGTGQGTSVLQL 426
N +PY+ + G+ + ++ G YI +L G + LQ
Sbjct: 207 DPLGIPNNLLPYMA-QVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGH-IAALQY 264
Query: 427 LRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPY 470
L + G +NLG+G+G++V ++ F + +G +PY
Sbjct: 265 LEAYNENEGLCRE---WNLGSGKGSTVFEVYHAFCKASGIDLPY 305
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%)
Query: 533 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTV 592
+NLG+G+G++V ++ F + +G +PY V RR GD++++ A D A+REL W V
Sbjct: 278 WNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTELQV 337
Query: 593 KIS 595
+ S
Sbjct: 338 EDS 340
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 6 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTH 65
+NLG+G+G++V ++ F + +G +PY V RR GD++++ A D A++EL W
Sbjct: 278 WNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTELQV 337
Query: 66 DIDC 69
+ C
Sbjct: 338 EDSC 341
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/159 (52%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
Query: 64 THDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGE 123
H I IHFAA+KAVGES+ +P+ YY+NNL + ++LL VM+ V ++VFSSS TVYG
Sbjct: 76 AHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGV 135
Query: 124 PQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIG 183
P+ PI E P + N YG+TK E++L+D+ A W + +LRYFNPVGAH SG IG
Sbjct: 136 PERSPIDETFPL-SATNPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIG 194
Query: 184 EDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGTG 222
EDP N+MPY+AQVA+G VFG+DY T DGTG
Sbjct: 195 EDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTG 233
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 144/289 (49%), Gaps = 42/289 (14%)
Query: 224 VVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFA 283
VV DN VNS +I IE+ TGK F+ D+ D+ L IF H I IHFA
Sbjct: 32 VVIADNLVNSKR-----EAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAIHFA 86
Query: 284 AVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHP 343
A+KAVGES+ +P+ YY+NNL + ++LL VM+ V ++VFSSS TVYG P+ PI E P
Sbjct: 87 ALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDETFP 146
Query: 344 TGNIKNFYNLGTGQGTSVL--QLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFER 401
+ GQ T ++ Q+LR E + V + Y G S L E
Sbjct: 147 LSATNPY-----GQ-TKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGL----IGED 196
Query: 402 VTG--NKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVP-------YI-FYNLGTGQGT 451
G N +PY+ + G+ L+ LR F + P P YI +L G
Sbjct: 197 PAGIPNNLMPYVA-QVAVGK----LEKLRVFG--SDYPTPDGTGVRDYIHVVDLARGHIA 249
Query: 452 SVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPY 500
++ L R +T NLGTG+G SVL+++R FE+ +G+ VPY
Sbjct: 250 ALDALERRDASLT--------VNLGTGRGYSVLEVVRAFEKASGRAVPY 290
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 7 NLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHD 66
NLGTG+G SVL+++R FE+ +G+ VPY + ARR GD+ YAN A + +GW A +
Sbjct: 264 NLGTGRGYSVLEVVRAFEKASGRAVPYELVARRPGDVAECYANPAAAAETIGWKAERDLE 323
Query: 67 IDCVIHF 73
C H+
Sbjct: 324 RMCADHW 330
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 534 NLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSA 588
NLGTG+G SVL+++R FE+ +G+ VPY + ARR GD+ YAN A +GW A
Sbjct: 264 NLGTGRGYSVLEVVRAFEKASGRAVPYELVARRPGDVAECYANPAAAAETIGWKA 318
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 100/177 (56%), Gaps = 3/177 (1%)
Query: 45 SMYANTDLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVM 104
+ + N DL K +I+ V+HFAA VG SM++PL YY NN+ + LLEVM
Sbjct: 46 AKFYNGDLRDKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVM 105
Query: 105 KSHGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWN 164
V + +FSS+ YGE ITE+ T N N YG+TK IE+ML S+A
Sbjct: 106 DEFKVDKFIFSSTAATYGEVDVDLITEETMT-NPTNTYGETKLAIEKMLHWYSQASNLRY 164
Query: 165 IISLRYFNPVGAHPSGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGT 221
I RYFN GA P+G IGED + T+++P + QVA+G + +FG DY T DGT
Sbjct: 165 KI-FRYFNVAGATPNGIIGED-HRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGT 219
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 107/233 (45%), Gaps = 23/233 (9%)
Query: 256 FYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKS 315
FY+ DL DK L ++F + +I+ V+HFAA VG SM++PL YY NN+ + LLEVM
Sbjct: 48 FYNGDLRDKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDE 107
Query: 316 HGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNK 375
V + +FSS+ YGE ITE+ T N N Y ++ ++L + + + +
Sbjct: 108 FKVDKFIFSSTAATYGEVDVDLITEETMT-NPTNTYG---ETKLAIEKMLHWYSQASNLR 163
Query: 376 PVPYIFYNLGTGQGTSVL--------QLLRTFERVT-GNKPVPYIF-YNLGTGQGTSVLQ 425
+ ++N+ ++ L+ +V G + +F + T GT +
Sbjct: 164 YKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRD 223
Query: 426 LLRTFERVTGKPV---------PYIFYNLGTGQGTSVLQLLRTFERVTGKPVP 469
+ + V + FYNLG G G SV +++ VT +P
Sbjct: 224 YIHVEDLVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIP 276
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 3 NKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSAR 62
+ FYNLG G G SV +++ VT +P V RR GD + A++ A+++LGW R
Sbjct: 247 SDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPARLVASSQKAKEKLGWDPR 306
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 532 FYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSAR 589
FYNLG G G SV +++ VT +P V RR GD + A++ A+ +LGW R
Sbjct: 249 FYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPARLVASSQKAKEKLGWDPR 306
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 23/176 (13%)
Query: 67 IDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQF 126
ID V+H A AVGES+++PL YY NN++ + LL+ M H +++FSSS ++G P
Sbjct: 94 IDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTM 153
Query: 127 LPITEDHPTGNI------KNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSG 180
++ + +I ++ YG++K E M++D ++A+ I LRYFN GAH G
Sbjct: 154 GSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYG-IKGICLRYFNACGAHEDG 212
Query: 181 RIGEDPTKSFTNIMP-----YLAQVA----------IGSKPHFTVFGADYETEDGT 221
IGE S T+++P ++ +A + +FG DY T DGT
Sbjct: 213 DIGEHYQGS-THLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGT 267
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 129/306 (42%), Gaps = 55/306 (17%)
Query: 219 DGTGKVVAIDNFV----NSVHIGDTPCSIRAIEQFTGKK---VDFYSC----DLVDKNRL 267
D VV +D+ V S H+ R ++Q G K D Y+ D+ +++ L
Sbjct: 25 DTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNEDFL 84
Query: 268 GEIFAKHD-IDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSS 326
+F +H ID V+H A AVGES+++PL YY NN++ + LL+ M H +++FSSS
Sbjct: 85 NGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSS 144
Query: 327 CTVYGEPQFLPITEDHPTGNIKNFYNLGTGQGTSVL---QLLRTFERVTGNKPVPYIFYN 383
++G P ++ + +I + + G S L +++R G K + ++N
Sbjct: 145 AAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFN 204
Query: 384 LGTG----------QGTSVL---------------QLLRTFERVTGNKPVPYIFYNLGTG 418
QG++ L Q L E + +K +P + T
Sbjct: 205 ACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTP 264
Query: 419 QGTSVLQLLRTFERVTG---------------KPVPYIFYNLGTGQGTSVLQLLRTFERV 463
GT V + + + K + +NLGT +G SV +++ +
Sbjct: 265 DGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEVARKT 324
Query: 464 TGKPVP 469
TG P+P
Sbjct: 325 TGHPIP 330
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 6 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSAR 62
+NLGT +G SV +++ + TG P+P RREGD + A +D A++ LGW +
Sbjct: 304 FNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPK 360
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 530 YIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSAR 589
+ +NLGT +G SV +++ + TG P+P RREGD + A +D A+ LGW +
Sbjct: 301 FSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPK 360
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 55 KELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVF 114
K+ W A D+ V HFAA V S EP++++ N++AT N+LE + GV +VF
Sbjct: 49 KDYSWGAGIKGDV--VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVF 106
Query: 115 SSSCTVYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPV 174
+SS TVYG+ +P E+ P I +VYG K E M ++ +++RY N V
Sbjct: 107 ASSSTVYGDADVIPTPEEEPYKPI-SVYGAAKAAGEVMCATYARLFGV-RCLAVRYANVV 164
Query: 175 G 175
G
Sbjct: 165 G 165
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 105/240 (43%), Gaps = 20/240 (8%)
Query: 234 VHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQ 293
V +G + +++ TG + + DL D + I D V HFAA V S
Sbjct: 21 VELGYEVVVVDIVQRDTGGSAELHVRDLKDYSWGAGIKG----DVVFHFAANPEVRLSTT 76
Query: 294 EPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNFYNL 353
EP++++ N++AT N+LE + GV +VF+SS TVYG+ +P E+ P I + Y
Sbjct: 77 EPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEEEPYKPI-SVYGA 135
Query: 354 GTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFY 413
G + T+ R+ G + + + N+ + L+ ++ + + P +
Sbjct: 136 AKAAGEV---MCATYARLFGVRCLAVRYANVVGPR----LRHGVIYDFIMKLRRNPNVLE 188
Query: 414 NLGTG-QGTSVLQL-------LRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTG 465
LG G Q S L + L +++ P++ N+G VL + + V G
Sbjct: 189 VLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLG 248
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 55 KELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVF 114
K+ W A D+ V HFAA V S EP++++ N++AT N+LE + GV +VF
Sbjct: 53 KDYSWGAGIKGDV--VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVF 110
Query: 115 SSSCTVYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPV 174
+SS TVYG+ +P E+ P I +VYG K E M ++ +++RY N V
Sbjct: 111 ASSSTVYGDADVIPTPEEEPYKPI-SVYGAAKAAGEVMCATYARLFGV-RCLAVRYANVV 168
Query: 175 G 175
G
Sbjct: 169 G 169
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 16/197 (8%)
Query: 277 DCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFL 336
D V HFAA V S EP++++ N++AT N+LE + GV +VF+SS TVYG+ +
Sbjct: 64 DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVI 123
Query: 337 PITEDHPTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLL 396
P E+ P I + Y G + T+ R+ G + + + N+ + L+
Sbjct: 124 PTPEEEPYKPI-SVYGAAKAAGEV---MCATYARLFGVRCLAVRYANVVGPR----LRHG 175
Query: 397 RTFERVTGNKPVPYIFYNLGTG-QGTSVLQL-------LRTFERVTGKPVPYIFYNLGTG 448
++ + + P + LG G Q S L + L +++ P++ N+G
Sbjct: 176 VIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNV 235
Query: 449 QGTSVLQLLRTFERVTG 465
VL + + V G
Sbjct: 236 DAVRVLDIAQIVAEVLG 252
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 70 VIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPI 129
V H AA V + P Y+NN++AT LLE M+ GV ++VF+S+ TVYGE + +P
Sbjct: 67 VWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPT 126
Query: 130 TEDHPTGNIKNVYGKTKHFIEEMLK 154
ED+PT I ++YG +K E +++
Sbjct: 127 PEDYPTHPI-SLYGASKLACEALIE 150
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 279 VIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPI 338
V H AA V + P Y+NN++AT LLE M+ GV ++VF+S+ TVYGE + +P
Sbjct: 67 VWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPT 126
Query: 339 TEDHPT 344
ED+PT
Sbjct: 127 PEDYPT 132
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 52 LAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQ 111
L + L R D+ V H A+ K+V S ++PL Y +N+ + +LL + S GV +
Sbjct: 55 LEKPVLELEERDLSDVRLVYHLASHKSVPRSFKQPLDYL-DNVDSGRHLLALCTSVGVPK 113
Query: 112 LVFSSSCTVYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYF 171
+V S+C VYG+ LP ED P + ++ Y +K +E + +A + +R+F
Sbjct: 114 VVVGSTCEVYGQADTLPTPEDSPL-SPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFF 172
Query: 172 N 172
N
Sbjct: 173 N 173
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 83/184 (45%), Gaps = 29/184 (15%)
Query: 275 DIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQ 334
D+ V H A+ K+V S ++PL Y +N+ + +LL + S GV ++V S+C VYG+
Sbjct: 69 DVRLVYHLASHKSVPRSFKQPLDYL-DNVDSGRHLLALCTSVGVPKVVVGSTCEVYGQAD 127
Query: 335 FLPITEDHPTGNIKNFYN--------LGTGQGTSV---LQLLRTFERV-TGNKP---VPY 379
LP ED P + G Q SV + ++R F G +P VP
Sbjct: 128 TLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERPDALVPR 187
Query: 380 IFYNLGTGQGTSVL---QLLRTFERVT---------GNKPVPYIFYNLGTGQGTSVLQLL 427
+ NL T V + R F +T N+P+P + N G+GQ SV ++
Sbjct: 188 LCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLPSVV-NFGSGQSLSVNDVI 246
Query: 428 RTFE 431
R +
Sbjct: 247 RILQ 250
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 67 IDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQF 126
+D V+H AA+ +V S+ +P+ N+ +N+L + V +++S + YG+
Sbjct: 103 VDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPG 162
Query: 127 LPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDP 186
LP ED G + Y TK ++ E+ D+ ++ I LRYFN G +DP
Sbjct: 163 LPKVED-TIGKPLSPYAVTK-YVNELYADVFSRCYGFSTIGLRYFNVFGRR------QDP 214
Query: 187 TKSFTNIMP 195
++ ++P
Sbjct: 215 NGAYAAVIP 223
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 223 KVVAIDNFVNSVHIG-DTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIH 281
KVV +DNF D S+ + +Q++ K F D+ + + A +D V+H
Sbjct: 53 KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFK--FIQGDIRNLDDCNNACAG--VDYVLH 108
Query: 282 FAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITED 341
AA+ +V S+ +P+ N+ +N+L + V +++S + YG+ LP ED
Sbjct: 109 QAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVED 168
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 67 IDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQF 126
+D V+H AA+ +V S+ +P+ N+ +N+L K+ V +++S + YG+
Sbjct: 114 VDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPA 173
Query: 127 LPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDP 186
LP E++ GN + Y TK ++ E+ + + I LRYFN G +DP
Sbjct: 174 LPKVEEN-IGNPLSPYAVTK-YVNEIYAQVYARTYGFKTIGLRYFNVFGRR------QDP 225
Query: 187 TKSFTNIMP 195
++ ++P
Sbjct: 226 NGAYAAVIP 234
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 224 VVAIDNFVNSVHIG-DTPCSIRAIEQFT------GKKVDFYSCDLVDKNRLGEIFAKHDI 276
V+ +DNF D ++ + EQ++ G D +C+ V K +
Sbjct: 65 VIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKG----------V 114
Query: 277 DCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFL 336
D V+H AA+ +V S+ +P+ N+ +N+L K+ V +++S + YG+ L
Sbjct: 115 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPAL 174
Query: 337 PITEDH 342
P E++
Sbjct: 175 PKVEEN 180
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 67 IDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQF 126
+D V+H AA+ +V S+ +P+ N+ +N+L K+ V +++S + YG+
Sbjct: 101 VDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPA 160
Query: 127 LPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDP 186
LP E++ GN + Y TK ++ E+ + + I LRYFN G +DP
Sbjct: 161 LPKVEEN-IGNPLSPYAVTK-YVNEIYAQVYARTYGFKTIGLRYFNVFGRR------QDP 212
Query: 187 TKSFTNIMP 195
++ ++P
Sbjct: 213 NGAYAAVIP 221
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 224 VVAIDNFVNSVHIG-DTPCSIRAIEQFT------GKKVDFYSCDLVDKNRLGEIFAKHDI 276
V+ +DNF D ++ + EQ++ G D +C+ V K +
Sbjct: 52 VIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKG----------V 101
Query: 277 DCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFL 336
D V+H AA+ +V S+ +P+ N+ +N+L K+ V +++S + YG+ L
Sbjct: 102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPAL 161
Query: 337 PITEDH 342
P E++
Sbjct: 162 PKVEEN 167
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 67 IDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQF 126
+D V+H AA+ +V S+ +P+ N+ +N+L K+ V +++S + YG+
Sbjct: 101 VDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPA 160
Query: 127 LPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDP 186
LP E++ GN + Y TK ++ E+ + + I LRYFN G +DP
Sbjct: 161 LPKVEEN-IGNPLSPYAVTK-YVNEIYAQVYARTYGFKTIGLRYFNVFGRR------QDP 212
Query: 187 TKSFTNIMP 195
++ ++P
Sbjct: 213 NGAYAAVIP 221
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 224 VVAIDNFVNSVHIG-DTPCSIRAIEQFT------GKKVDFYSCDLVDKNRLGEIFAKHDI 276
V+ +DNF D ++ + EQ++ G D +C+ V K +
Sbjct: 52 VIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKG----------V 101
Query: 277 DCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFL 336
D V+H AA+ +V S+ +P+ N+ +N+L K+ V +++S + YG+ L
Sbjct: 102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPAL 161
Query: 337 PITEDH 342
P E++
Sbjct: 162 PKVEEN 167
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 67 IDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQF 126
+D V+H AA+ +V S+ +P+ N+ +N+L K+ V +++S + YG+
Sbjct: 95 VDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPA 154
Query: 127 LPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDP 186
LP E++ GN + Y TK ++ E+ + + I LRYFN G +DP
Sbjct: 155 LPKVEEN-IGNPLSPYAVTK-YVNEIYAQVYARTYGFKTIGLRYFNVFGRR------QDP 206
Query: 187 TKSFTNIMP 195
++ ++P
Sbjct: 207 NGAYAAVIP 215
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 224 VVAIDNFVNSVHIG-DTPCSIRAIEQFT------GKKVDFYSCDLVDKNRLGEIFAKHDI 276
V+ +DNF D ++ + EQ++ G D +C+ V K +
Sbjct: 46 VIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKG----------V 95
Query: 277 DCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFL 336
D V+H AA+ +V S+ +P+ N+ +N+L K+ V +++S + YG+ L
Sbjct: 96 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPAL 155
Query: 337 PITEDH 342
P E++
Sbjct: 156 PKVEEN 161
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 67 IDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGE--P 124
+ V+H A + + ++ + + N+ T LL+ + GV + VF+SS VY E P
Sbjct: 78 VSAVLHLGAFMSWAPADRDRM--FAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRP 135
Query: 125 QFLPITEDHPTGNIKNVYGKTKHFIEEMLK 154
+FLP+TEDHP + YG TK EE+++
Sbjct: 136 EFLPVTEDHPLCP-NSPYGLTKLLGEELVR 164
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 276 IDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGE--P 333
+ V+H A + + ++ + + N+ T LL+ + GV + VF+SS VY E P
Sbjct: 78 VSAVLHLGAFMSWAPADRDRM--FAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRP 135
Query: 334 QFLPITEDHP 343
+FLP+TEDHP
Sbjct: 136 EFLPVTEDHP 145
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 252 KKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLE 311
++ F D+ D+ L +F +H DCV+H AA V S+ P + + N++ T LLE
Sbjct: 51 ERFAFEKVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLE 110
Query: 312 VMKSH 316
+++
Sbjct: 111 AARAY 115
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 65 HDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSH 107
H DCV+H AA V S+ P + + N++ T LLE +++
Sbjct: 73 HQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAY 115
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 254 VDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAV-KAVGESMQEPLMYYKNNLIATINLLEV 312
+ F + D+ +++ + K+ ID + H A + A GE ++P + YK N+ T N+LE
Sbjct: 41 IKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSAKGE--KDPALAYKVNMNGTYNILEA 98
Query: 313 MKSHGVYQLVFSSSCTVYG 331
K H V ++V S+ V+G
Sbjct: 99 AKQHRVEKVVIPSTIGVFG 117
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 22/108 (20%)
Query: 31 VPYIVEARREGDIVSMYANTDLAQKELGWSARCTHD---------------IDCVIHFAA 75
VPY+ E + ++++ +D+ Q++ G T D ID + H A
Sbjct: 16 VPYLAEKYGKKNVIA----SDIVQRDTGGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAG 71
Query: 76 V-KAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYG 122
+ A GE ++P + YK N+ T N+LE K H V ++V S+ V+G
Sbjct: 72 ILSAKGE--KDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFG 117
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 254 VDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAV-KAVGESMQEPLMYYKNNLIATINLLEV 312
+ F + D+ +++ + K+ ID + H A + A GE ++P + YK N+ T N+LE
Sbjct: 41 IKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSAKGE--KDPALAYKVNMNGTYNILEA 98
Query: 313 MKSHGVYQLVFSSSCTVYG 331
K H V ++V S+ V+G
Sbjct: 99 AKQHRVEKVVIPSTIGVFG 117
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 22/108 (20%)
Query: 31 VPYIVEARREGDIVSMYANTDLAQKELGWSARCTHD---------------IDCVIHFAA 75
VPY+ E + ++++ +D+ Q++ G T D ID + H A
Sbjct: 16 VPYLAEKYGKKNVIA----SDIVQRDTGGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAG 71
Query: 76 V-KAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYG 122
+ A GE ++P + YK N+ T N+LE K H V ++V S+ V+G
Sbjct: 72 ILSAKGE--KDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFG 117
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 256 FYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKS 315
F ++ + L + + D+ +++FAA V S++ P+ +Y N+I T+ LLE++K
Sbjct: 79 FVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKK 138
Query: 316 HGVYQLVFSSSCTVYG 331
+ +LV S+ VYG
Sbjct: 139 YPHIKLVQVSTDEVYG 154
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 66 DIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYG 122
D+ +++FAA V S++ P+ +Y N+I T+ LLE++K + +LV S+ VYG
Sbjct: 98 DVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYG 154
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 246 IEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIA 305
+E G +V+ D+ D + ++ AK D ++H+AA S+ +P + N I
Sbjct: 48 LEAILGDRVELVVGDIADAELVDKLAAK--ADAIVHYAAESHNDNSLNDPSPFIHTNFIG 105
Query: 306 TINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHP 343
T LLE + + + + S+ VYG+ LP+ ED P
Sbjct: 106 TYTLLEAARKYDI-RFHHVSTDEVYGD---LPLREDLP 139
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 51 DLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVY 110
D+A EL + D ++H+AA S+ +P + N I T LLE + + +
Sbjct: 62 DIADAEL--VDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI- 118
Query: 111 QLVFSSSCTVYGEPQFLPITEDHP 134
+ S+ VYG+ LP+ ED P
Sbjct: 119 RFHHVSTDEVYGD---LPLREDLP 139
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 98/241 (40%), Gaps = 17/241 (7%)
Query: 231 VNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGE 290
++ + G P +++ +E + F D+ D + E+ K +D V+H AA V
Sbjct: 35 IDKLGYGSNPANLKDLED--DPRYTFVKGDVADYELVKELVRK--VDGVVHLAAESHVDR 90
Query: 291 SMQEPLMYYKNNLIATINLLE-VMKSHGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKN 349
S+ P ++ +N+I T LLE + + + + V S+ VYG+ TE+
Sbjct: 91 SISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRLMPSSP 150
Query: 350 FYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGNKPVP 409
+ VL RT+ N + N G Q L + +T R + +P
Sbjct: 151 YSATKAASDMLVLGWTRTYNL---NASITRCTNNYGPYQFPEKL-IPKTIIRASLGLKIP 206
Query: 410 YIFYNLGTGQGTS----VLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTG 465
GTG+ V +R E V K YN+ G+ + L++++ R+ G
Sbjct: 207 I----YGTGKNVRDWLYVEDHVRAIELVLLKGESREIYNISAGEEKTNLEVVKIILRLMG 262
Query: 466 K 466
K
Sbjct: 263 K 263
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 40 EGDIVSMYANTDLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATIN 99
E D + D+A EL +D V+H AA V S+ P ++ +N+I T
Sbjct: 51 EDDPRYTFVKGDVADYEL--VKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYT 108
Query: 100 LLE-VMKSHGVYQLVFSSSCTVYGE 123
LLE + + + + V S+ VYG+
Sbjct: 109 LLESIRRENPEVRFVHVSTDEVYGD 133
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
+V +DNF R +E + G + + +L++ + + ++ ++D + H
Sbjct: 31 EVTVVDNFFTG--------RKRNVEHWIGHE----NFELINHDVVEPLYI--EVDQIYHL 76
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
A+ + M P+ K N I T+N+L + K G +L+ +S+ VYG+P+ P +ED+
Sbjct: 77 ASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDY 135
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 66 DIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQ 125
++D + H A+ + M P+ K N I T+N+L + K G +L+ +S+ VYG+P+
Sbjct: 69 EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPE 127
Query: 126 FLPITEDH 133
P +ED+
Sbjct: 128 VHPQSEDY 135
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 253 KVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEV 312
+ +F D+ D + IF ++ D V+H AA V S+ P + + N++ T LLEV
Sbjct: 51 RYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEV 110
Query: 313 MKSH 316
+ +
Sbjct: 111 ARKY 114
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 68 DCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSH 107
D V+H AA V S+ P + + N++ T LLEV + +
Sbjct: 75 DAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKY 114
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 255 DFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMK 314
+F D+ +KN + + K+ D H A A+ S+ P M ++ N+ T+NLLE ++
Sbjct: 53 EFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVR 112
Query: 315 SHGV-YQLVFSSSCTVYGE 332
+ +++SS+ VYG+
Sbjct: 113 QYNSNCNIIYSSTNKVYGD 131
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 16/107 (14%)
Query: 68 DCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGV-YQLVFSSSCTVYGEPQF 126
D H A A+ S+ P M ++ N+ T+NLLE ++ + +++SS+ VYG+ +
Sbjct: 75 DSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQ 134
Query: 127 LPITE--------DHPTG-------NIKNVYGKTKHFIEEMLKDLSK 158
E D P G + + YG +K ++ + D ++
Sbjct: 135 YKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYAR 181
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
+V +DNF R +E + G + + +L++ + + ++ ++D + H
Sbjct: 53 EVTVVDNFFTG--------RKRNVEHWIGHE----NFELINHDVVEPLYI--EVDQIYHL 98
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
A+ + P+ K N I T+N L + K G +L+ +S+ VYG+P+ P +ED+
Sbjct: 99 ASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDY 157
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 66 DIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQ 125
++D + H A+ + P+ K N I T+N L + K G +L+ +S+ VYG+P+
Sbjct: 91 EVDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGA-RLLLASTSEVYGDPE 149
Query: 126 FLPITEDH 133
P +ED+
Sbjct: 150 VHPQSEDY 157
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 252 KKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLE 311
K V F+ DL DK + F + V H AA +V S+++P++ ++ NL+ +NLLE
Sbjct: 43 KGVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLE 102
Query: 312 VMKSHGVYQLVFSSS-CTVYGE 332
+ +GV +LVF+S+ +YGE
Sbjct: 103 ACRQYGVEKLVFASTGGAIYGE 124
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 62 RCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSS-CTV 120
R TH V H AA +V S+++P++ ++ NL+ +NLLE + +GV +LVF+S+ +
Sbjct: 66 RPTH----VSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAI 121
Query: 121 YGE-PQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHK-EWNIISLRYFNPVGAH- 177
YGE P+ E P K+ Y +K E L +++ +W +SLRY N G
Sbjct: 122 YGEVPEGERAEETWPP-RPKSPYAASKAAFEHYLSVYGQSYGLKW--VSLRYGNVYGPRQ 178
Query: 178 -PSGRIG 183
P G G
Sbjct: 179 DPHGEAG 185
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 77/205 (37%), Gaps = 29/205 (14%)
Query: 261 LVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQ 320
+ D L F V+H AA + E N+ +IN+ + GV +
Sbjct: 74 VTDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDA---ATNVQGSINVAKAASKAGVKR 130
Query: 321 LVFSSSCTVYGEPQFLPITEDHPTGNIKNFYNLGTGQGTSVLQL-------LRTFERVTG 373
L+ + YG P +PI D PT + Y + G + L + LR VTG
Sbjct: 131 LLNFQTALCYGRPATVPIPIDSPTAPFTS-YGISKTAGEAFLMMSDVPVVSLR-LANVTG 188
Query: 374 NK----PVPYIFYNLGTGQGTSVLQLLRTFERVTGNKPV---------PYIFYNLGTGQG 420
+ P+P + L GQ +R F ++ + P +N+ TG+G
Sbjct: 189 PRLAIGPIPTFYKRLKAGQKCFCSDTVRDFLDMSDFLAIADLSLQEGRPTGVFNVSTGEG 248
Query: 421 TSVLQLLRTFERVTG----KPVPYI 441
S+ ++ G +PVP +
Sbjct: 249 HSIKEVFDVVLDYVGATLAEPVPVV 273
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 70 VIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPI 129
V+H AA + E N+ +IN+ + GV +L+ + YG P +PI
Sbjct: 92 VVHSAAAYKDPDDWAEDA---ATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPI 148
Query: 130 TEDHPTGNIKNVYGKTKHFIEE--MLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDPT 187
D PT + YG +K E M+ D+ ++SLR N G P IG PT
Sbjct: 149 PIDSPTAPFTS-YGISKTAGEAFLMMSDVP-------VVSLRLANVTG--PRLAIGPIPT 198
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 31/160 (19%)
Query: 468 VPYIFYNLGTGQGTSVLQL-------LR----TFERVTGKPVPYIFYNLGTGQGTSVLQL 516
P+ Y + G + L + LR T R+ P+P + L GQ
Sbjct: 155 APFTSYGISKTAGEAFLMMSDVPVVSLRLANVTGPRLAIGPIPTFYKRLKAGQKCFCSDT 214
Query: 517 LRTFERVT------------GKPVPYIFYNLGTGQGTSVLQLLRTFERVTG----KPVPY 560
+R F ++ G+P +N+ TG+G S+ ++ G +PVP
Sbjct: 215 VRDFLDMSDFLAIADLSLQEGRPTG--VFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPV 272
Query: 561 IVEARREGDIVSMYANTDLAQRELGWSARCTVKISGGGKL 600
+ A D+ S+ + + E GW A+ K + G+L
Sbjct: 273 V--APGADDVPSVVLDPSKTETEFGWKAKVDFKDTITGQL 310
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 243 IRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESM---QEPLMYY 299
I + TGK ++ Y D+ D L E F + D V+HF ++ SM +
Sbjct: 68 ISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQ 127
Query: 300 KNNLIATINLLEVMKSHG-VYQLVFSSSCTVYGEP 333
NN+I T+N+L +K G LV + YG P
Sbjct: 128 HNNVIGTLNVLFAIKEFGEECHLVKLGAMGEYGTP 162
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 243 IRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESM---QEPLMYY 299
I + TGK ++ Y D+ D L E F + D V+HF ++ SM +
Sbjct: 68 ISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQ 127
Query: 300 KNNLIATINLLEVMKSHG-VYQLVFSSSCTVYGEP 333
NN+I T+N+L +K G LV + YG P
Sbjct: 128 HNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTP 162
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 243 IRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESM---QEPLMYY 299
I + TGK ++ Y D+ D L E F + D V+HF ++ SM +
Sbjct: 58 ISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQ 117
Query: 300 KNNLIATINLLEVMKSHG-VYQLVFSSSCTVYGEP 333
NN+I T+N+L +K G LV + YG P
Sbjct: 118 HNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTP 152
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 55 KELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVF 114
++ G AR +D ++HFAA V S+ ++ + N+ T LL+ GV ++V
Sbjct: 65 RDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVH 124
Query: 115 SSSCTVYGEPQFLPITEDHP 134
S+ VYG TE P
Sbjct: 125 VSTNQVYGSIDSGSWTESSP 144
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 253 KVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEV 312
++ F D+ D L +D ++HFAA V S+ ++ + N+ T LL+
Sbjct: 56 RLRFVHGDIRDAGLLAREL--RGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQC 113
Query: 313 MKSHGVYQLVFSSSCTVYGEPQFLPITEDHP 343
GV ++V S+ VYG TE P
Sbjct: 114 AVDAGVGRVVHVSTNQVYGSIDSGSWTESSP 144
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 55 KELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVF 114
++ G AR +D ++HFAA V S+ ++ + N+ T LL+ GV ++V
Sbjct: 65 RDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVH 124
Query: 115 SSSCTVYGEPQFLPITEDHP 134
S+ VYG TE P
Sbjct: 125 VSTDEVYGSIDSGSWTESSP 144
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 253 KVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEV 312
++ F D+ D L +D ++HFAA V S+ ++ + N+ T LL+
Sbjct: 56 RLRFVHGDIRDAGLLAREL--RGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQC 113
Query: 313 MKSHGVYQLVFSSSCTVYGEPQFLPITEDHP 343
GV ++V S+ VYG TE P
Sbjct: 114 AVDAGVGRVVHVSTDEVYGSIDSGSWTESSP 144
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 231 VNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGE 290
VN VH+ D S I V F + D L + + + D V H A
Sbjct: 57 VNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASL--QDEYDYVFHLATYHGNQS 114
Query: 291 SMQEPLMYYKNNLIATINLLEVMKS-HGVYQLVFSSSCTVYGEPQF 335
S+ +PL ++NN + T+ L E +K + ++V+S++ E F
Sbjct: 115 SIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTF 160
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 61 ARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKS-HGVYQLVFSSSCT 119
A + D V H A S+ +PL ++NN + T+ L E +K + ++V+S++
Sbjct: 94 ASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGC 153
Query: 120 VYGEPQF 126
E F
Sbjct: 154 SIAEKTF 160
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 533 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIV-SMYANTDLAQRELGWSARCT 591
YN+ +G+ TS+ L +TG +R D + + + A+RELG+SA +
Sbjct: 283 YNIASGKETSIADLATKINEITGNNTELDRLPKRPWDNSGKRFGSPEKARRELGFSADVS 342
Query: 592 V 592
+
Sbjct: 343 I 343
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 250 TGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPL-MYYKNNLIATIN 308
G + CDL D N + + A D ++H + S+++P + N+I N
Sbjct: 41 AGPNEECVQCDLADANAVNAMVAG--CDGIVHLGGI-----SVEKPFEQILQGNIIGLYN 93
Query: 309 LLEVMKSHGVYQLVFSSSCTVYGEPQFLPITE 340
L E ++HG ++VF+SS G + P TE
Sbjct: 94 LYEAARAHGQPRIVFASSNHTIG---YYPQTE 122
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 68 DCVIHFAAVKAVGESMQEPL-MYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYG-EPQ 125
D ++H + S+++P + N+I NL E ++HG ++VF+SS G PQ
Sbjct: 66 DGIVHLGGI-----SVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQ 120
Query: 126 FLPITEDHPTGNIKNVYGKTKHFIEEMLK 154
+ D P + G +K F E + +
Sbjct: 121 TERLGPDVPA-RPDGLAGVSKCFGENLAR 148
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 250 TGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPL-MYYKNNLIATIN 308
G + CDL D N + + A D ++H + S+++P + N+I N
Sbjct: 41 AGPNEECVQCDLADANAVNAMVAG--CDGIVHLGGI-----SVEKPFEQILQGNIIGLYN 93
Query: 309 LLEVMKSHGVYQLVFSSSCTVYGEPQFLPITE 340
L E ++HG ++VF+SS G + P TE
Sbjct: 94 LYEAARAHGQPRIVFASSNHTIG---YYPQTE 122
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 68 DCVIHFAAVKAVGESMQEPL-MYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYG-EPQ 125
D ++H + S+++P + N+I NL E ++HG ++VF+SS G PQ
Sbjct: 66 DGIVHLGGI-----SVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQ 120
Query: 126 FLPITEDHPTGNIKNVYGKTKHFIEEMLK 154
+ D P +YG +K F E + +
Sbjct: 121 TERLGPDVPA-RPDGLYGVSKCFGENLAR 148
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 237 GDTPCSI------RAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGE 290
G+TP + +AI + + D+ DL+ N+L +D+D V+H AA +
Sbjct: 26 GNTPIILTRSIGNKAINDYEYRVSDYTLEDLI--NQL------NDVDAVVHLAATRGSQG 77
Query: 291 SMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITE 340
+ E + +N I T NL + + + +V++S+ + Y + LP E
Sbjct: 78 KISE----FHDNEILTQNLYDACYENNISNIVYASTISAYSDETSLPWNE 123
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 65 HDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEP 124
+D+D V+H AA + + E + +N I T NL + + + +V++S+ + Y +
Sbjct: 61 NDVDAVVHLAATRGSQGKISE----FHDNEILTQNLYDACYENNISNIVYASTISAYSDE 116
Query: 125 QFLPITE 131
LP E
Sbjct: 117 TSLPWNE 123
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 260 DLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKS-HGV 318
D+ D+N+L E + + V H AA V S EP+ Y N++ T+ LLE ++ GV
Sbjct: 65 DIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGV 124
Query: 319 YQLVFSSSCTVYGEPQFL 336
+V +S Y +++
Sbjct: 125 KAVVNITSDKCYDNKEWI 142
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 26 VTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQE 85
+T VP + E R D + Q +L S R + V H AA V S E
Sbjct: 41 LTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIR-EFQPEIVFHMAAQPLVRLSYSE 99
Query: 86 PLMYYKNNLIATINLLEVMKS-HGVYQLVFSSSCTVYGEPQFL 127
P+ Y N++ T+ LLE ++ GV +V +S Y +++
Sbjct: 100 PVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWI 142
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 260 DLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVY 319
D+ D +L A+ + V H AA V S ++P+ Y N++ T++LLE +K G
Sbjct: 65 DIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQVGNI 124
Query: 320 QLVFS-SSCTVYGEPQFLP-ITEDHPTGNIKNFYN 352
+ V + +S Y +++ E+ P G + N
Sbjct: 125 KAVVNITSDKCYDNREWVWGYRENEPMGGYDPYSN 159
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 31 VPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYY 90
VP + E R D++ + D+ E S+ + V H AA V S ++P+ Y
Sbjct: 46 VPSLFEIVRLNDLMESHIG-DIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTY 104
Query: 91 KNNLIATINLLEVMKSHGVYQLVF---SSSC-----TVYGEPQFLPITEDHPTGNIK 139
N++ T++LLE +K G + V S C V+G + P+ P N K
Sbjct: 105 STNVMGTVHLLETVKQVGNIKAVVNITSDKCYDNREWVWGYRENEPMGGYDPYSNSK 161
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 248 QFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATI 307
+F ++ F+ D+ D RL +A +D IH AA+K V + PL K N++
Sbjct: 66 EFNDPRMRFFIGDVRDLERLN--YALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGAS 123
Query: 308 NLLEVMKSHGVYQLVFSSS 326
N++ + + Q++ S+
Sbjct: 124 NVINACLKNAISQVIALST 142
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
Query: 67 IDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQF 126
+D IH AA+K V + PL K N++ N++ + + Q++ S+
Sbjct: 92 VDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALST--------- 142
Query: 127 LPITEDHPTGNIKNVYGKTKHFIEEMLKDLS--KAHKEWNIISLRYFNPVGAHPS 179
N N+YG TK +++ + K + +RY N VG+ S
Sbjct: 143 ------DKAANPINLYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRGS 191
>pdb|2HRZ|A Chain A, The Crystal Structure Of The Nucleoside-diphosphate-sugar
Epimerase From Agrobacterium Tumefaciens
Length = 342
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 68 DCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMK-SHGVY----QLVFSSSCTVYG 122
D + H AA+ + GE+ + Y+ NL T L + ++ ++G ++VF+SS V+G
Sbjct: 88 DVIFHLAAIVS-GEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFG 146
Query: 123 EPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSK 158
P PI ++ T + + YG K E +L D S+
Sbjct: 147 APLPYPIPDEFHTTPLTS-YGTQKAICELLLSDYSR 181
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 241 CSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYK 300
S R E V DL++ + + K D V + AA VG S ++P++ +
Sbjct: 41 ASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAE 100
Query: 301 NNLIATINLLEVMKS----HGVYQLVFSSSCTVYGEPQFLPITEDHP 343
+ I + +LE +++ YQ +S+ ++G+ Q +P TE P
Sbjct: 101 VDAIGVLRILEALRTVKPDTKFYQ---ASTSEMFGKVQEIPQTEKTP 144
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 68 DCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKS----HGVYQLVFSSSCTVYGE 123
D V + AA VG S ++P++ + + I + +LE +++ YQ +S+ ++G+
Sbjct: 77 DEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQ---ASTSEMFGK 133
Query: 124 PQFLPITEDHP 134
Q +P TE P
Sbjct: 134 VQEIPQTEKTP 144
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 258 SCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLM-YYKNNLIATINLLEVMKSH 316
+CDL D + ++ D D +IH V S++ P + N+I NL E ++
Sbjct: 48 ACDLADAQAVHDLV--KDCDGIIHLGGV-----SVERPWNDILQANIIGAYNLYEAARNL 100
Query: 317 GVYQLVFSSS 326
G ++VF+SS
Sbjct: 101 GKPRIVFASS 110
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 42 DIVSMYANTDLAQKELGWSARCTHDI--DC--VIHFAAVKAVGESMQEPLM-YYKNNLIA 96
D+ + A+ ++ +L A+ HD+ DC +IH V S++ P + N+I
Sbjct: 36 DLGAAEAHEEIVACDLA-DAQAVHDLVKDCDGIIHLGGV-----SVERPWNDILQANIIG 89
Query: 97 TINLLEVMKSHGVYQLVFSSSCTVYG-EPQFLPITEDHPTGNIKNVYGKTKHFIEEM 152
NL E ++ G ++VF+SS G P+ I + P ++YG +K F E++
Sbjct: 90 AYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTEVPR-RPDSLYGLSKCFGEDL 145
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 468 VPYIFYNLGTGQGTSVLQLLRTF---ERVTGKPVPYI-FYNLGTGQGTSVLQLLRTFERV 523
+ IF + G+G S+L+++ + E Y+ + G +G+ L E V
Sbjct: 342 ISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGNAEGS---DLWTAIEDV 398
Query: 524 TGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREG 568
+GKPV + G V++L R ++T +++ EG
Sbjct: 399 SGKPVKRVMEYWIKNPGYPVIKLKRNGRKITMYQTRFLLNGEEEG 443
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 468 VPYIFYNLGTGQGTSVLQLLRTF---ERVTGKPVPYI-FYNLGTGQGTSVLQLLRTFERV 523
+ IF + G+G S+L+++ + E Y+ + G +G+ L E V
Sbjct: 342 ISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGNAEGS---DLWTAIEDV 398
Query: 524 TGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREG 568
+GKPV + G V++L R ++T +++ EG
Sbjct: 399 SGKPVKRVMEYWIKNPGYPVIKLKRNGRKITMYQTRFLLNGEEEG 443
>pdb|1T6L|A Chain A, Crystal Structure Of The Human Cytomegalovirus Dna
Polymerase Subunit, Ul44
pdb|1YYP|A Chain A, Crystal Structure Of Cytomegalovirus Ul44 Bound To
C-Terminal Peptide From Cmv Ul54
Length = 290
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 309 LLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNFYNLGTGQ 357
+L+ ++SH V ++ F+SSC + F P T ++ T + NF L + +
Sbjct: 49 ILQTVRSHCVSKITFNSSCLYITDKSFQPKTINNSTPLLGNFMYLTSSK 97
>pdb|1KBZ|A Chain A, Crystal Structure Of Apo-dtdp-6-deoxy-l-lyxo-4-hexulose
Reductase (rmld) From Salmonella Enterica Serovar
Typhimurium
pdb|1KC1|A Chain A, Crystal Structure Of Dtdp-6-deoxy-l-lyxo-4-hexulose
Reductase (rmld) In Complex With Nadph
pdb|1KC3|A Chain A, Crystal Structure Of Dtdp-6-Deoxy-L-Lyxo-4-Hexulose
Reductase (Rmld) In Complex With Nadph And
Dtdp-L-Rhamnose
pdb|1N2S|A Chain A, Crystal Structure Of Dtdp-6-Deoxy-L-Lyxo-4-Hexulose
Reductase (Rmld) In Complex With Nadh
Length = 299
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 68 DCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFL 127
D +++ AA AV ++ EP + N + + + G + + +S+ G +
Sbjct: 56 DVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGD-I 114
Query: 128 PITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAH 160
P E T + NVYGKTK E+ L+D H
Sbjct: 115 PWQETDATSPL-NVYGKTKLAGEKALQDNCPKH 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,984,076
Number of Sequences: 62578
Number of extensions: 868060
Number of successful extensions: 2082
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1800
Number of HSP's gapped (non-prelim): 245
length of query: 600
length of database: 14,973,337
effective HSP length: 104
effective length of query: 496
effective length of database: 8,465,225
effective search space: 4198751600
effective search space used: 4198751600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)