RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16545
(600 letters)
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia,
isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A*
1i3n_A*
Length = 348
Score = 320 bits (824), Expect = e-105
Identities = 114/218 (52%), Positives = 141/218 (64%), Gaps = 15/218 (6%)
Query: 5 FYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCT 64
F+N G G+ L R + +TG+ V + E DI+ A L +K
Sbjct: 35 FHNAFRGGGSLPESLRRV-QELTGRSVEFE-----EMDILDQGALQRLFKK--------- 79
Query: 65 HDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEP 124
+ VIHFA +KAVGES+Q+PL YY+ NL TI LLE+MK+HGV LVFSSS TVYG P
Sbjct: 80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNP 139
Query: 125 QFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGE 184
Q+LP+ E HPTG N YGK+K FIEEM++DL +A K WN + LRYFNP GAH SG IGE
Sbjct: 140 QYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGE 199
Query: 185 DPTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGTG 222
DP N+MPY++QVAIG + VFG DY+TEDGTG
Sbjct: 200 DPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Score = 214 bits (547), Expect = 2e-64
Identities = 74/153 (48%), Positives = 95/153 (62%), Gaps = 12/153 (7%)
Query: 202 IGSKPHFTV--FGADYETEDGTGKVVAIDNFVNSVHIGD-TPCSIRAIEQFTGKKVDFYS 258
IGS H + A Y V IDNF N+ G P S+R +++ TG+ V+F
Sbjct: 14 IGS--HTVLELLEAGYL-------PVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64
Query: 259 CDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGV 318
D++D+ L +F K+ VIHFA +KAVGES+Q+PL YY+ NL TI LLE+MK+HGV
Sbjct: 65 MDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGV 124
Query: 319 YQLVFSSSCTVYGEPQFLPITEDHPTGNIKNFY 351
LVFSSS TVYG PQ+LP+ E HPTG N Y
Sbjct: 125 KNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPY 157
Score = 106 bits (266), Expect = 3e-25
Identities = 35/65 (53%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Query: 4 KFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARC 63
+ YNLGTG G SVLQ+++ E+ +GK +PY V ARREGD+ + YAN LAQ+ELGW+A
Sbjct: 265 RIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAA- 323
Query: 64 THDID 68
+D
Sbjct: 324 -LGLD 327
Score = 105 bits (265), Expect = 5e-25
Identities = 34/73 (46%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 521 ERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLA 580
++ + YNLGTG G SVLQ+++ E+ +GK +PY V ARREGD+ + YAN LA
Sbjct: 256 RKLKEQC-GCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLA 314
Query: 581 QRELGWSARCTVK 593
Q ELGW+A +
Sbjct: 315 QEELGWTAALGLD 327
Score = 61.0 bits (149), Expect = 3e-10
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 431 ERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIF 472
++ + YNLGTG G SVLQ+++ E+ +GK +PY
Sbjct: 256 RKLKEQC-GCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKV 296
Score = 61.0 bits (149), Expect = 3e-10
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 461 ERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIF 502
++ + YNLGTG G SVLQ+++ E+ +GK +PY
Sbjct: 256 RKLKEQC-GCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKV 296
Score = 61.0 bits (149), Expect = 4e-10
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 413 YNLGTGQGTSVLQLLRTFERVTGKPVPYIF 442
YNLGTG G SVLQ+++ E+ +GK +PY
Sbjct: 267 YNLGTGTGYSVLQMVQAMEKASGKKIPYKV 296
Score = 56.4 bits (137), Expect = 1e-08
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 351 YNLGTGQGTSVLQLLRTFERVTGNKPVPYIF 381
YNLGTG G SVLQ+++ E+ +G K +PY
Sbjct: 267 YNLGTGTGYSVLQMVQAMEKASG-KKIPYKV 296
Score = 56.4 bits (137), Expect = 1e-08
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 382 YNLGTGQGTSVLQLLRTFERVTGNKPVPYIF 412
YNLGTG G SVLQ+++ E+ +G K +PY
Sbjct: 267 YNLGTGTGYSVLQMVQAMEKASG-KKIPYKV 296
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 319 bits (819), Expect = e-105
Identities = 97/208 (46%), Positives = 129/208 (62%), Gaps = 14/208 (6%)
Query: 15 SVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHFA 74
S +L ER+ GK ++ EGDI + T++ H ID VIHFA
Sbjct: 36 SKRSVLPVIERLGGKHPTFV-----EGDIRNEALMTEILHD---------HAIDTVIHFA 81
Query: 75 AVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHP 134
+KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSSS TVYG+ +P E P
Sbjct: 82 GLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESFP 141
Query: 135 TGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDPTKSFTNIM 194
TG ++ YGK+K +E++L DL KA +W+I LRYFNPVGAHPSG +GEDP N+M
Sbjct: 142 TGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLM 201
Query: 195 PYLAQVAIGSKPHFTVFGADYETEDGTG 222
PY+AQVA+G + +FG DY TEDGTG
Sbjct: 202 PYIAQVAVGRRDSLAIFGNDYPTEDGTG 229
Score = 212 bits (543), Expect = 6e-64
Identities = 57/152 (37%), Positives = 80/152 (52%), Gaps = 16/152 (10%)
Query: 202 IGSKPHFTV--FGADYETEDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSC 259
IGS H V ++ V+ +DN NS + IE+ GK F
Sbjct: 12 IGS--HTCVQLLQNGHD-------VIILDNLCNS-----KRSVLPVIERLGGKHPTFVEG 57
Query: 260 DLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVY 319
D+ ++ + EI H ID VIHFA +KAVGES+Q+PL YY NN+ T+ L+ M++ V
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 320 QLVFSSSCTVYGEPQFLPITEDHPTGNIKNFY 351
+FSSS TVYG+ +P E PTG ++ Y
Sbjct: 118 NFIFSSSATVYGDNPKIPYVESFPTGTPQSPY 149
Score = 106 bits (267), Expect = 2e-25
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 4 KFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARC 63
YNLG G G SVL ++ F + GKPV Y RREGD+ + +A+ A +EL W
Sbjct: 257 HIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVT- 315
Query: 64 THDID 68
+D
Sbjct: 316 -RTLD 319
Score = 105 bits (266), Expect = 3e-25
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 521 ERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLA 580
E++ KP YNLG G G SVL ++ F + GKPV Y RREGD+ + +A+ A
Sbjct: 248 EKLANKP-GVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKA 306
Query: 581 QRELGWSARCTV 592
REL W T+
Sbjct: 307 DRELNWRVTRTL 318
Score = 61.3 bits (150), Expect = 2e-10
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 431 ERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIF 472
E++ KP YNLG G G SVL ++ F + GKPV Y F
Sbjct: 248 EKLANKP-GVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHF 288
Score = 61.3 bits (150), Expect = 2e-10
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 461 ERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIF 502
E++ KP YNLG G G SVL ++ F + GKPV Y F
Sbjct: 248 EKLANKP-GVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHF 288
Score = 61.3 bits (150), Expect = 3e-10
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 410 YIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIF 442
YNLG G G SVL ++ F + GKPV Y F
Sbjct: 256 VHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHF 288
Score = 56.7 bits (138), Expect = 8e-09
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 379 YIFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIF 412
YNLG G G SVL ++ F + G KPV Y F
Sbjct: 256 VHIYNLGAGVGNSVLDVVNAFSKACG-KPVNYHF 288
Score = 56.3 bits (137), Expect = 1e-08
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 351 YNLGTGQGTSVLQLLRTFERVTGNKPVPYIF 381
YNLG G G SVL ++ F + G KPV Y F
Sbjct: 259 YNLGAGVGNSVLDVVNAFSKACG-KPVNYHF 288
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 314 bits (808), Expect = e-103
Identities = 92/208 (44%), Positives = 122/208 (58%), Gaps = 15/208 (7%)
Query: 15 SVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHFA 74
S + + E++TGK + E D+ A + H I IHFA
Sbjct: 41 SKREAIARIEKITGKTPAFH-----ETDVSDERALARIFDA---------HPITAAIHFA 86
Query: 75 AVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHP 134
A+KAVGES+ +P+ YY+NNL + ++LL VM+ V ++VFSSS TVYG P+ PI E P
Sbjct: 87 ALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDETFP 146
Query: 135 TGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDPTKSFTNIM 194
N YG+TK E++L+D+ A W + +LRYFNPVGAH SG IGEDP N+M
Sbjct: 147 LSAT-NPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLM 205
Query: 195 PYLAQVAIGSKPHFTVFGADYETEDGTG 222
PY+AQVA+G VFG+DY T DGTG
Sbjct: 206 PYVAQVAVGKLEKLRVFGSDYPTPDGTG 233
Score = 210 bits (536), Expect = 6e-63
Identities = 63/146 (43%), Positives = 81/146 (55%), Gaps = 16/146 (10%)
Query: 202 IGSKPHFTV--FGADYETEDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSC 259
IGS H V Y+ VV DN VNS +I IE+ TGK F+
Sbjct: 17 IGS--HTAVELLAHGYD-------VVIADNLVNS-----KREAIARIEKITGKTPAFHET 62
Query: 260 DLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVY 319
D+ D+ L IF H I IHFAA+KAVGES+ +P+ YY+NNL + ++LL VM+ V
Sbjct: 63 DVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK 122
Query: 320 QLVFSSSCTVYGEPQFLPITEDHPTG 345
++VFSSS TVYG P+ PI E P
Sbjct: 123 RIVFSSSATVYGVPERSPIDETFPLS 148
Score = 106 bits (267), Expect = 2e-25
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 6 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTH 65
NLGTG+G SVL+++R FE+ +G+ VPY + ARR GD+ YAN A + +GW A
Sbjct: 263 VNLGTGRGYSVLEVVRAFEKASGRAVPYELVARRPGDVAECYANPAAAAETIGWKAE--R 320
Query: 66 DID 68
D++
Sbjct: 321 DLE 323
Score = 105 bits (266), Expect = 4e-25
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 521 ERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLA 580
+ + + + NLGTG+G SVL+++R FE+ +G+ VPY + ARR GD+ YAN A
Sbjct: 252 DALERRD-ASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARRPGDVAECYANPAAA 310
Query: 581 QRELGWSARCTVK 593
+GW A ++
Sbjct: 311 AETIGWKAERDLE 323
Score = 60.9 bits (149), Expect = 3e-10
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 431 ERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIF 472
+ + + + NLGTG+G SVL+++R FE+ +G+ VPY
Sbjct: 252 DALERRD-ASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYEL 292
Score = 60.9 bits (149), Expect = 3e-10
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 461 ERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIF 502
+ + + + NLGTG+G SVL+++R FE+ +G+ VPY
Sbjct: 252 DALERRD-ASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYEL 292
Score = 60.9 bits (149), Expect = 3e-10
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 413 YNLGTGQGTSVLQLLRTFERVTGKPVPYIF 442
NLGTG+G SVL+++R FE+ +G+ VPY
Sbjct: 263 VNLGTGRGYSVLEVVRAFEKASGRAVPYEL 292
Score = 56.3 bits (137), Expect = 9e-09
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 351 YNLGTGQGTSVLQLLRTFERVTGNKPVPYIF 381
NLGTG+G SVL+++R FE+ +G + VPY
Sbjct: 263 VNLGTGRGYSVLEVVRAFEKASG-RAVPYEL 292
Score = 56.3 bits (137), Expect = 9e-09
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 382 YNLGTGQGTSVLQLLRTFERVTGNKPVPYIF 412
NLGTG+G SVL+++R FE+ +G + VPY
Sbjct: 263 VNLGTGRGYSVLEVVRAFEKASG-RAVPYEL 292
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 301 bits (772), Expect = 1e-93
Identities = 91/213 (42%), Positives = 124/213 (58%), Gaps = 20/213 (9%)
Query: 15 SVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHFA 74
S + E +T +P+ E D+ + ++ + ID VIHFA
Sbjct: 47 STYDSVARLEVLTKHHIPFY-----EVDLCDRKGLEKVFKE---------YKIDSVIHFA 92
Query: 75 AVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGE----PQFLPIT 130
+KAVGES Q PL YY NN++ T+ LLE+M+ + V + VFSSS TVYG+ P +PI
Sbjct: 93 GLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIP 152
Query: 131 EDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKE-WNIISLRYFNPVGAHPSGRIGEDPTKS 189
E+ P G N YG TK+ IE +L DL + K+ W LRYFNP+GAHPSG IGEDP
Sbjct: 153 EECPLGPT-NPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGI 211
Query: 190 FTNIMPYLAQVAIGSKPHFTVFGADYETEDGTG 222
N++PY+AQVA+G + +FG DY++ DGT
Sbjct: 212 PNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTP 244
Score = 201 bits (513), Expect = 2e-56
Identities = 63/150 (42%), Positives = 83/150 (55%), Gaps = 20/150 (13%)
Query: 202 IGSKPHFTV--FGADYETEDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSC 259
IGS H V Y+ V DN NS T S+ +E T + FY
Sbjct: 23 IGS--HTVVELIENGYD-------CVVADNLSNS-----TYDSVARLEVLTKHHIPFYEV 68
Query: 260 DLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVY 319
DL D+ L ++F ++ ID VIHFA +KAVGES Q PL YY NN++ T+ LLE+M+ + V
Sbjct: 69 DLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS 128
Query: 320 QLVFSSSCTVYGE----PQFLPITEDHPTG 345
+ VFSSS TVYG+ P +PI E+ P G
Sbjct: 129 KFVFSSSATVYGDATRFPNMIPIPEECPLG 158
Score = 106 bits (266), Expect = 4e-24
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 517 LRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYAN 576
L+ E +NLG+G+G++V ++ F + +G +PY V RR GD++++ A
Sbjct: 262 LQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAK 321
Query: 577 TDLAQRELGWSARCTV 592
D A+REL W V
Sbjct: 322 PDRAKRELKWQTELQV 337
Score = 105 bits (264), Expect = 6e-24
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 4 KFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARC 63
+ +NLG+G+G++V ++ F + +G +PY V RR GD++++ A D A++EL W
Sbjct: 276 REWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQT-- 333
Query: 64 THDID 68
++
Sbjct: 334 ELQVE 338
Score = 62.1 bits (151), Expect = 3e-10
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 427 LRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIF 472
L+ E +NLG+G+G++V ++ F + +G +PY
Sbjct: 262 LQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKV 307
Score = 62.1 bits (151), Expect = 3e-10
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 457 LRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIF 502
L+ E +NLG+G+G++V ++ F + +G +PY
Sbjct: 262 LQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKV 307
Score = 60.9 bits (148), Expect = 7e-10
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 396 LRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIF 442
L+ E N+ + +NLG+G+G++V ++ F + +G +PY
Sbjct: 262 LQYLEAYNENEGL-CREWNLGSGKGSTVFEVYHAFCKASGIDLPYKV 307
Score = 56.3 bits (136), Expect = 2e-08
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 365 LRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIF 412
L+ E N+ + +NLG+G+G++V ++ F + +G +PY
Sbjct: 262 LQYLEAYNENEGL-CREWNLGSGKGSTVFEVYHAFCKASG-IDLPYKV 307
Score = 55.9 bits (135), Expect = 3e-08
Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 351 YNLGTGQGTSVLQLLRTFERVTGNKPVPYIF 381
+NLG+G+G++V ++ F + +G +PY
Sbjct: 278 WNLGSGKGSTVFEVYHAFCKASG-IDLPYKV 307
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose
metabolism, isomerase, NAD, spine; HET: NAD; 2.7A
{Bacillus anthracis}
Length = 330
Score = 273 bits (702), Expect = 2e-87
Identities = 69/159 (43%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 64 THDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGE 123
+I+ V+HFAA VG SM++PL YY NN+ + LLEVM V + +FSS+ YGE
Sbjct: 65 QENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGE 124
Query: 124 PQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIG 183
ITE+ T N YG+TK IE+ML S+A RYFN GA P+G IG
Sbjct: 125 VDVDLITEETMTNPT-NTYGETKLAIEKMLHWYSQAS-NLRYKIFRYFNVAGATPNGIIG 182
Query: 184 EDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGTG 222
ED T+++P + QVA+G + +FG DY T DGT
Sbjct: 183 EDHRPE-THLIPLVLQVALGQREKIMMFGDDYNTPDGTC 220
Score = 174 bits (443), Expect = 1e-49
Identities = 46/123 (37%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
VV +DN AI + FY+ DL DK L ++F + +I+ V+HF
Sbjct: 27 SVVVVDNLQTG--------HEDAIT----EGAKFYNGDLRDKAFLRDVFTQENIEAVMHF 74
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
AA VG SM++PL YY NN+ + LLEVM V + +FSS+ YGE ITE+
Sbjct: 75 AADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDLITEET 134
Query: 343 PTG 345
T
Sbjct: 135 MTN 137
Score = 97.9 bits (245), Expect = 2e-22
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 6 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTH 65
YNLG G G SV +++ VT +P V RR GD + A++ A+++LGW R
Sbjct: 250 YNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPARLVASSQKAKEKLGWDPRYV- 308
Query: 66 DIDCVI 71
++ +I
Sbjct: 309 NVKTII 314
Score = 97.5 bits (244), Expect = 2e-22
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 533 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSAR 589
YNLG G G SV +++ VT +P V RR GD + A++ A+ +LGW R
Sbjct: 250 YNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPARLVASSQKAKEKLGWDPR 306
Score = 58.6 bits (143), Expect = 2e-09
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 413 YNLGTGQGTSVLQLLRTFERVTGKPVPYIF 442
YNLG G G SV +++ VT +P
Sbjct: 250 YNLGNGNGFSVKEIVDAVREVTNHEIPAEV 279
Score = 58.6 bits (143), Expect = 2e-09
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 443 YNLGTGQGTSVLQLLRTFERVTGKPVPYIF 472
YNLG G G SV +++ VT +P
Sbjct: 250 YNLGNGNGFSVKEIVDAVREVTNHEIPAEV 279
Score = 58.6 bits (143), Expect = 2e-09
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 473 YNLGTGQGTSVLQLLRTFERVTGKPVPYIF 502
YNLG G G SV +++ VT +P
Sbjct: 250 YNLGNGNGFSVKEIVDAVREVTNHEIPAEV 279
Score = 54.0 bits (131), Expect = 5e-08
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 345 GNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIF 381
G +FYNLG G G SV +++ VT +P
Sbjct: 244 GGESDFYNLGNGNGFSVKEIVDAVREVTN-HEIPAEV 279
Score = 54.0 bits (131), Expect = 6e-08
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 382 YNLGTGQGTSVLQLLRTFERVTGNKPVPYIF 412
YNLG G G SV +++ VT +P
Sbjct: 250 YNLGNGNGFSVKEIVDAVREVTN-HEIPAEV 279
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 265 bits (679), Expect = 3e-83
Identities = 69/245 (28%), Positives = 103/245 (42%), Gaps = 40/245 (16%)
Query: 7 NLGTGQGTSV-----LQLLRTFERVTGKPVPYIVEARR--EGDIVSMYANTDLAQKELGW 59
+L G S + R ++ G P+ GD+ N D
Sbjct: 35 SLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDV----RNEDFLNGVFT- 89
Query: 60 SARCTHD-IDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSC 118
H ID V+H A AVGES+++PL YY NN++ + LL+ M H +++FSSS
Sbjct: 90 ----RHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSA 145
Query: 119 TVYGEPQF-------LPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYF 171
++G P PI + + YG++K E M++D ++A+ I LRYF
Sbjct: 146 AIFGNPTMGSVSTNAEPIDINAKKSPE-SPYGESKLIAERMIRDCAEAY-GIKGICLRYF 203
Query: 172 NPVGAHPSGRIGEDPTKSFT----NIMPYLAQVAIG----------SKPHFTVFGADYET 217
N GAH G IGE S + ++ +A + +FG DY T
Sbjct: 204 NACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPT 263
Query: 218 EDGTG 222
DGT
Sbjct: 264 PDGTC 268
Score = 175 bits (446), Expect = 2e-49
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 19/142 (13%)
Query: 223 KVVAIDNFVNS----VHIGDTPCSIRAIEQFTG-------KKVDFYSCDLVDKNRLGEIF 271
VV +D+ V + H+ R ++Q G + D+ +++ L +F
Sbjct: 29 SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNEDFLNGVF 88
Query: 272 AKHD-IDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVY 330
+H ID V+H A AVGES+++PL YY NN++ + LL+ M H +++FSSS ++
Sbjct: 89 TRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIF 148
Query: 331 GEPQF-------LPITEDHPTG 345
G P PI +
Sbjct: 149 GNPTMGSVSTNAEPIDINAKKS 170
Score = 100 bits (252), Expect = 4e-23
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 6 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTH 65
+NLGT +G SV +++ + TG P+P RREGD + A +D A++ LGW +
Sbjct: 304 FNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYD- 362
Query: 66 DID 68
++
Sbjct: 363 TLE 365
Score = 100 bits (251), Expect = 6e-23
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 533 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSAR 589
+NLGT +G SV +++ + TG P+P RREGD + A +D A+ LGW +
Sbjct: 304 FNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPK 360
Score = 61.1 bits (149), Expect = 4e-10
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 392 VLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIF 442
+L L + +K + +NLGT +G SV +++ + TG P+P
Sbjct: 283 ILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEVARKTTGHPIPVRE 333
Score = 60.8 bits (148), Expect = 5e-10
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 443 YNLGTGQGTSVLQLLRTFERVTGKPVPYIF 472
+NLGT +G SV +++ + TG P+P
Sbjct: 304 FNLGTSRGYSVREVIEVARKTTGHPIPVRE 333
Score = 60.8 bits (148), Expect = 5e-10
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 473 YNLGTGQGTSVLQLLRTFERVTGKPVPYIF 502
+NLGT +G SV +++ + TG P+P
Sbjct: 304 FNLGTSRGYSVREVIEVARKTTGHPIPVRE 333
Score = 56.5 bits (137), Expect = 1e-08
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 361 VLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIF 412
+L L + +K + +NLGT +G SV +++ + TG P+P
Sbjct: 283 ILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEVARKTTG-HPIPVRE 333
Score = 56.1 bits (136), Expect = 2e-08
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 351 YNLGTGQGTSVLQLLRTFERVTGNKPVPYIF 381
+NLGT +G SV +++ + TG P+P
Sbjct: 304 FNLGTSRGYSVREVIEVARKTTG-HPIPVRE 333
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica}
PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 188 bits (479), Expect = 9e-55
Identities = 35/151 (23%), Positives = 54/151 (35%), Gaps = 23/151 (15%)
Query: 65 HDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEP 124
V+H AA + + N+ +IN+ + GV +L+ + YG P
Sbjct: 87 FKPTHVVHSAAA---YKDPDDWAEDAATNVQGSINVAKAASKAGVKRLLNFQTALCYGRP 143
Query: 125 QFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGE 184
+PI D PT YG +K E L + ++SLR N G IG
Sbjct: 144 ATVPIPIDSPTAPF-TSYGISKTAGEAFLMMS-----DVPVVSLRLANVTGPR--LAIGP 195
Query: 185 DPTKSFTNIMPYLAQVAIGSKPHFTVFGADY 215
P + ++ G K F +D
Sbjct: 196 IP--------TFYKRLKAGQK----CFCSDT 214
Score = 181 bits (461), Expect = 3e-52
Identities = 42/248 (16%), Positives = 75/248 (30%), Gaps = 59/248 (23%)
Query: 224 VVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFA 283
++ IDNF + + + D L F V+H A
Sbjct: 47 ILVIDNFATG--------KREVLPP--VAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSA 96
Query: 284 AVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHP 343
A + + N+ +IN+ + GV +L+ + YG P +PI D P
Sbjct: 97 AA---YKDPDDWAEDAATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSP 153
Query: 344 TGNIKNFYNLGTGQGTSVL---QLLRTFERVTGNKPVPYI---FYN-----LGTGQGTSV 392
T Y G S L + VP + N L G +
Sbjct: 154 TAPF-TSY------GISKTAGEAFLMMSD-------VPVVSLRLANVTGPRLAIGPIPTF 199
Query: 393 LQLLRTFERVTGNKPVP-YIF--------------------YNLGTGQGTSVLQLLRTFE 431
+ L+ ++ + V ++ +N+ TG+G S+ ++
Sbjct: 200 YKRLKAGQKCFCSDTVRDFLDMSDFLAIADLSLQEGRPTGVFNVSTGEGHSIKEVFDVVL 259
Query: 432 RVTGKPVP 439
G +
Sbjct: 260 DYVGATLA 267
Score = 89.9 bits (224), Expect = 8e-20
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 6 YNLGTGQGTSVLQLLRTFERVTGKPV--PYIVEARREGDIVSMYANTDLAQKELGWSARC 63
+N+ TG+G S+ ++ G + P V A D+ S+ + + E GW A+
Sbjct: 241 FNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADDVPSVVLDPSKTETEFGWKAK- 299
Query: 64 THDID 68
D
Sbjct: 300 -VDFK 303
Score = 88.8 bits (221), Expect = 2e-19
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 533 YNLGTGQGTSVLQLLRTFERVTGKPV--PYIVEARREGDIVSMYANTDLAQRELGWSARC 590
+N+ TG+G S+ ++ G + P V A D+ S+ + + E GW A+
Sbjct: 241 FNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADDVPSVVLDPSKTETEFGWKAKV 300
Query: 591 TVK 593
K
Sbjct: 301 DFK 303
Score = 51.0 bits (123), Expect = 5e-07
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 473 YNLGTGQGTSVLQLLRTFERVTGKPVP 499
+N+ TG+G S+ ++ G +
Sbjct: 241 FNVSTGEGHSIKEVFDVVLDYVGATLA 267
Score = 47.9 bits (115), Expect = 5e-06
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 351 YNLGTGQGTSVLQLLRTFERVTGNK-PVPYIF 381
+N+ TG+G S+ ++ G P
Sbjct: 241 FNVSTGEGHSIKEVFDVVLDYVGATLAEPVPV 272
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 168 bits (429), Expect = 7e-48
Identities = 65/279 (23%), Positives = 103/279 (36%), Gaps = 66/279 (23%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGK------KVDFYSCDLVDKNRLGEIFAKHDI 276
+V +DN TGK V F+ DL DK + F +
Sbjct: 26 EVAVLDNLA------------------TGKRENVPKGVPFFRVDLRDKEGVERAFREFRP 67
Query: 277 DCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSS-CTVYGE-PQ 334
V H AA +V S+++P++ ++ NL+ +NLLE + +GV +LVF+S+ +YGE P+
Sbjct: 68 THVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPE 127
Query: 335 FLPITEDHPTGNIKNFYNLGTGQGTSVL---QLLRTFERVTGNKPVPYIFYNL-GTGQG- 389
E P + Y S L + + G K V + N+ G Q
Sbjct: 128 GERAEETWPPRPK-SPY------AASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDP 180
Query: 390 ---TSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSV-------------LQLLRTFERV 433
V+ + ERV P ++ G V L + E +
Sbjct: 181 HGEAGVVAIF--AERVLKGLP-VTLYARKTPGDEGCVRDYVYVGDVAEAHALALFSLEGI 237
Query: 434 TGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIF 472
YN+GTG+G + ++L GK
Sbjct: 238 ---------YNVGTGEGHTTREVLMAVAEAAGKAPEVQP 267
Score = 166 bits (424), Expect = 4e-47
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 13/173 (7%)
Query: 51 DLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVY 110
DL KE A V H AA +V S+++P++ ++ NL+ +NLLE + +GV
Sbjct: 51 DLRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVE 110
Query: 111 QLVFSSS-CTVYGE-PQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISL 168
+LVF+S+ +YGE P+ E P + Y +K E L +++ +SL
Sbjct: 111 KLVFASTGGAIYGEVPEGERAEETWPPRPK-SPYAASKAAFEHYLSVYGQSY-GLKWVSL 168
Query: 169 RYFNPVGAHPSGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGT 221
RY N G +DP ++ A+ + P T++ D
Sbjct: 169 RYGNVYGP------RQDP-HGEAGVVAIFAERVLKGLP-VTLYARKTPG-DEG 212
Score = 80.3 bits (199), Expect = 1e-16
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 533 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTV 592
YN+GTG+G + ++L GK R GD+ + GW +
Sbjct: 238 YNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSVLSPLKL-MAHGWRPKVGF 296
Query: 593 K 593
+
Sbjct: 297 Q 297
Score = 79.1 bits (196), Expect = 2e-16
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 6 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTH 65
YN+GTG+G + ++L GK R GD+ + GW +
Sbjct: 238 YNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSVLSPLKL-MAHGWRPK--V 294
Query: 66 DID 68
Sbjct: 295 GFQ 297
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 162 bits (413), Expect = 1e-45
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 22/171 (12%)
Query: 51 DLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVY 110
DLA ++ + V H AA V + P Y+NN++AT LLE M+ GV
Sbjct: 51 DLAADDI---KDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS 107
Query: 111 QLVFSSSCTVYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRY 170
++VF+S+ TVYGE + +P ED+PT + ++YG +K E +++ R+
Sbjct: 108 RIVFTSTSTVYGEAKVIPTPEDYPT-HPISLYGASKLACEALIESYCHTFD-MQAWIYRF 165
Query: 171 FNPVGAHPSGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGT 221
N +G + + I ++ ++ + + G +G
Sbjct: 166 ANVIGRRSTHGV----------IYDFIMKLKRNPEE-LEILG------NGE 199
Score = 162 bits (412), Expect = 2e-45
Identities = 56/261 (21%), Positives = 96/261 (36%), Gaps = 39/261 (14%)
Query: 222 GKVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIH 281
++V IDN + G + + + DL + + + + V H
Sbjct: 25 NEIVVIDNLSS----G----NEEFVN----EAARLVKADLAADD-IKDYL--KGAEEVWH 69
Query: 282 FAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITED 341
AA V + P Y+NN++AT LLE M+ GV ++VF+S+ TVYGE + +P ED
Sbjct: 70 IAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPED 129
Query: 342 HPTGNIKNFYNLGTGQGTSVL---QLLRTFERVTGNKPVPYIFYN-LGTGQGTSVLQLLR 397
+PT + + Y G S L L+ ++ + Y F N +G V+
Sbjct: 130 YPT-HPISLY------GASKLACEALIESYCHTFDMQAWIYRFANVIGRRSTHGVIYDF- 181
Query: 398 TFERVTGNKPVPYIFYNLGTGQGT------SVLQLLRTFERVTGKPVPYIFYNLGTGQGT 451
++ N I G G + + +N+G+
Sbjct: 182 -IMKLKRNPEELEIL-----GNGEQNKSYIYISDCVDAMLFGLRGDERVNIFNIGSEDQI 235
Query: 452 SVLQLLRTFERVTGKPVPYIF 472
V ++ G + F
Sbjct: 236 KVKRIAEIVCEELGLSPRFRF 256
Score = 66.8 bits (164), Expect = 3e-12
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 533 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEA---RREGDIVSMYANTDLAQRELGWSAR 589
+N+G+ V ++ G + +GD+ M + + + LGW R
Sbjct: 227 FNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKL-KRLGWKPR 285
Query: 590 CTVK 593
+
Sbjct: 286 YNSE 289
Score = 66.8 bits (164), Expect = 4e-12
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 6 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEA---RREGDIVSMYANTDLAQKELGWSAR 62
+N+G+ V ++ G + +GD+ M + + K LGW R
Sbjct: 227 FNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKL-KRLGWKPR 285
Query: 63 CT 64
Sbjct: 286 YN 287
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 160 bits (406), Expect = 1e-44
Identities = 47/156 (30%), Positives = 69/156 (44%), Gaps = 19/156 (12%)
Query: 66 DIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQ 125
D V HFAA V S EP++++ N++AT N+LE + GV +VF+SS TVYG+
Sbjct: 62 KGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDAD 121
Query: 126 FLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGED 185
+P E+ P +VYG K E M ++ +++RY N VG + D
Sbjct: 122 VIPTPEEEPY-KPISVYGAAKAAGEVMCATYARLFG-VRCLAVRYANVVGPRLRHGVIYD 179
Query: 186 PTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGT 221
F ++ V G DGT
Sbjct: 180 ----FIM------KLRRNPNV-LEVLG------DGT 198
Score = 155 bits (393), Expect = 1e-42
Identities = 60/264 (22%), Positives = 100/264 (37%), Gaps = 44/264 (16%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
+VV +DN + G + + + DL D A D V HF
Sbjct: 26 EVVVVDNLSS----G----RREFVN----PSAELHVRDLKDY----SWGAGIKGDVVFHF 69
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
AA V S EP++++ N++AT N+LE + GV +VF+SS TVYG+ +P E+
Sbjct: 70 AANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEEE 129
Query: 343 PTGNIKNFYNLGTGQGTSVL---QLLRTFERVTGNKPVPYIFYN-LGTGQGTSVLQLLRT 398
P + Y G + + T+ R+ G + + + N +G V+
Sbjct: 130 PY-KPISVY------GAAKAAGEVMCATYARLFGVRCLAVRYANVVGPRLRHGVIYDF-- 180
Query: 399 FERVTGNKPVPYIFYNLGTGQGTS----------VLQLLRTFERVTGKPVPYIFYNLGTG 448
++ N V + G GT V L +++ P++ N+G
Sbjct: 181 IMKLRRNPNVLEVL-----GDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNV 235
Query: 449 QGTSVLQLLRTFERVTGKPVPYIF 472
VL + + V G
Sbjct: 236 DAVRVLDIAQIVAEVLGLRPEIRL 259
Score = 69.9 bits (172), Expect = 3e-13
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
Query: 517 LRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE------GDI 570
L +++ P++ N+G VL + + V G + GD+
Sbjct: 214 LAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDV 273
Query: 571 VSMYANTDLAQRELGWSARCT 591
M + GW T
Sbjct: 274 KYMTLAVTKLMKLTGWRPTMT 294
Score = 68.3 bits (168), Expect = 1e-12
Identities = 13/65 (20%), Positives = 18/65 (27%), Gaps = 6/65 (9%)
Query: 6 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE------GDIVSMYANTDLAQKELGW 59
N+G VL + + V G + GD+ M K GW
Sbjct: 230 LNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGW 289
Query: 60 SARCT 64
T
Sbjct: 290 RPTMT 294
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 154 bits (390), Expect = 1e-41
Identities = 40/183 (21%), Positives = 63/183 (34%), Gaps = 27/183 (14%)
Query: 64 THDIDCVIHFAAVKAVGESM---QEPLMYYKNNLIATINLLEVMKSHGV-YQLVFSSSCT 119
+ + D V+HF ++ SM + NN+I T+N+L +K G LV +
Sbjct: 98 SFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMG 157
Query: 120 VYGEPQ------FLPITEDHPTGNIK------NVYGKTKHFIEEMLKDLSKAHKEWNIIS 167
YG P ++ IT + T + + Y +K + KA
Sbjct: 158 EYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWG-IRATD 216
Query: 168 LRYFN-------PVGAHPSGRIGEDPTKSF-TNIMPYLAQVAIGSKPHFTVFGADYETED 219
L H R D F T + + Q A+G P TV+G +T
Sbjct: 217 LNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVG-HP-LTVYGKGGQTRG 274
Query: 220 GTG 222
Sbjct: 275 YLD 277
Score = 145 bits (368), Expect = 2e-38
Identities = 66/400 (16%), Positives = 108/400 (27%), Gaps = 103/400 (25%)
Query: 224 VVAIDNFVNS-----------VHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFA 272
V +DN V I I + TGK ++ Y D+ D L E F
Sbjct: 38 VCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFEFLAESFK 97
Query: 273 KHDIDCVIHFAAVKAVGESM---QEPLMYYKNNLIATINLLEVMKSHGV-YQLVFSSSCT 328
+ D V+HF ++ SM + NN+I T+N+L +K G LV +
Sbjct: 98 SFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMG 157
Query: 329 VYGEPQ------FLPITEDHPTGNIKNFYNLGTGQGTS---VLQLLRTFERVTGNKPVPY 379
YG P ++ IT + T + + S + + G +
Sbjct: 158 EYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWG---IRA 214
Query: 380 IFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTS--VLQLLRTFERVTGKP 437
N G G +T E + + Y+ G + +Q G P
Sbjct: 215 TDLNQGVVYGV------KTDETEMHEELRNRLDYDAVFGTALNRFCVQAA------VGHP 262
Query: 438 VPYIFYNLGTGQ----GTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERV 493
+ ++ G G + ++ E P
Sbjct: 263 LT-VY---GKGGQTRGYLDIRDTVQCVEIAIANP-------------------------- 292
Query: 494 TGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERV 553
K + +N T SV +L + K +
Sbjct: 293 -AKAGEFRVFNQFTE-QFSVNELASLVTKAGSKLGLDV---------------------- 328
Query: 554 TGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVK 593
+ R E + A ELG
Sbjct: 329 ---KKMTVPNPRVEAEEHYYNAKHTKL-MELGLEPHYLSD 364
Score = 48.2 bits (115), Expect = 5e-06
Identities = 12/64 (18%), Positives = 17/64 (26%), Gaps = 7/64 (10%)
Query: 6 YNLGTGQGTSVLQLLRTFERVTGK-----PVPYIVEARREGDIVSMYANTDLAQKELGWS 60
+N T SV +L + K + R E + A ELG
Sbjct: 301 FNQFTE-QFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKL-MELGLE 358
Query: 61 ARCT 64
Sbjct: 359 PHYL 362
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 140 bits (356), Expect = 2e-37
Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 21/176 (11%)
Query: 64 THDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGV-----YQLVFSSSC 118
D + H AA+ GE+ + Y+ NL T L + ++ ++VF+SS
Sbjct: 84 EARPDVIFHLAAI-VSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSI 142
Query: 119 TVYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHP 178
V+G P PI ++ T YG K E +L D S+ ++ I +R
Sbjct: 143 AVFGAPLPYPIPDEFHT-TPLTSYGTQKAICELLLSDYSRRG-FFDGIGIRLPT--ICIR 198
Query: 179 SGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGAD---YETEDGTGKVVAIDNFV 231
G+ + + + + + + + A+ +
Sbjct: 199 PGKPNAAA----SGFFSNILREPLVGQEAVLPVPESIRHWHASPRS----AVGFLI 246
Score = 119 bits (301), Expect = 6e-30
Identities = 47/276 (17%), Positives = 83/276 (30%), Gaps = 48/276 (17%)
Query: 215 YETEDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKH 274
K ID F G + VD + DL ++ +
Sbjct: 39 SLGGKPVEKFTLIDVFQPEAPAGFSG------------AVDARAADLSAPGEAEKLV-EA 85
Query: 275 DIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGV-----YQLVFSSSCTV 329
D + H AA+ GE+ + Y+ NL T L + ++ ++VF+SS V
Sbjct: 86 RPDVIFHLAAI-VSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAV 144
Query: 330 YGEPQFLPITEDHPTGNIKNFYNLGTGQGTSVL---QLLRTFERVTGNKPV----PYIFY 382
+G P PI ++ T Y GT LL + R + P I
Sbjct: 145 FGAPLPYPIPDEFHT-TPLTSY------GTQKAICELLLSDYSRRGFFDGIGIRLPTICI 197
Query: 383 NLG--TGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQ-------GTSVLQLLRTFERV 433
G + + + + + ++V L+
Sbjct: 198 RPGKPNAAASGFFSNI--LREPLVGQ--EAVLP-VPESIRHWHASPRSAVGFLIHGAMID 252
Query: 434 TGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVP 469
K P ++ G +V + + +V G+
Sbjct: 253 VEKVGPRRNLSM-PGLSATVGEQIEALRKVAGEKAV 287
Score = 45.5 bits (108), Expect = 3e-05
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 533 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANT------DLAQRELGW 586
G +V + + +V G+ ++ R +++ RELG+
Sbjct: 261 NLSMPGLSATVGEQIEALRKVAGEKAVALIR-REPNEMIMRMCEGWAPGFEAKRARELGF 319
Query: 587 SAR 589
+A
Sbjct: 320 TAE 322
Score = 44.3 bits (105), Expect = 7e-05
Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 9/69 (13%)
Query: 6 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANT------DLAQKELGW 59
G +V + + +V G+ ++ R +++ +ELG+
Sbjct: 261 NLSMPGLSATVGEQIEALRKVAGEKAVALIR-REPNEMIMRMCEGWAPGFEAKRARELGF 319
Query: 60 SARCTHDID 68
+A +
Sbjct: 320 TAE--SSFE 326
Score = 32.7 bits (75), Expect = 0.32
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 351 YNLGTGQGTSVLQLLRTFERVTGNKPVPYIFY 382
G +V + + +V G K V I
Sbjct: 261 NLSMPGLSATVGEQIEALRKVAGEKAVALIRR 292
Score = 32.7 bits (75), Expect = 0.32
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 382 YNLGTGQGTSVLQLLRTFERVTGNKPVPYIFY 413
G +V + + +V G K V I
Sbjct: 261 NLSMPGLSATVGEQIEALRKVAGEKAVALIRR 292
Score = 30.8 bits (70), Expect = 1.2
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 473 YNLGTGQGTSVLQLLRTFERVTGKPVP 499
G +V + + +V G+
Sbjct: 261 NLSMPGLSATVGEQIEALRKVAGEKAV 287
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 119 bits (301), Expect = 4e-30
Identities = 38/289 (13%), Positives = 81/289 (28%), Gaps = 67/289 (23%)
Query: 202 IGSKPHFTVFGADYETEDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDL 261
+G + + DG + + + K ++ Y +
Sbjct: 14 LGQ--YV----VESIKNDGN-TPIILTRSI------------------GNKAINDYEYRV 48
Query: 262 VDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQL 321
D I +D+D V+H AA + + E +N I T NL + + + +
Sbjct: 49 SDYTLEDLINQLNDVDAVVHLAATRGSQGKISEF----HDNEILTQNLYDACYENNISNI 104
Query: 322 VFSSSCTVYGEPQFLPITEDHPTGNIKNFYNLGTGQGTSVL---QLLRTFERVTGNKPVP 378
V++S+ + Y + LP E Y G S L + + R G +
Sbjct: 105 VYASTISAYSDETSLPWNEKELPLPD-LMY------GVSKLACEHIGNIYSRKKG---LC 154
Query: 379 YI----FYNLGTGQGTS------VLQLLRTFERVTGNKPVPYIFYNLGTGQGT----SVL 424
+ G + + Q + + +
Sbjct: 155 IKNLRFAHLYGFNEKNNYMINRFFRQAFH-------GEQLT-LH---ANSVAKREFLYAK 203
Query: 425 QLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFY 473
++ + +N+G+G + ++ T G +
Sbjct: 204 DAAKSVIYALKQEKVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVK 252
Score = 104 bits (262), Expect = 6e-25
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 65 HDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEP 124
+D+D V+H AA + + E +N I T NL + + + +V++S+ + Y +
Sbjct: 61 NDVDAVVHLAATRGSQGKISEF----HDNEILTQNLYDACYENNISNIVYASTISAYSDE 116
Query: 125 QFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFN 172
LP E +YG +K E + S+ I +LR+ +
Sbjct: 117 TSLPWNEKELPLPD-LMYGVSKLACEHIGNIYSRKKG-LCIKNLRFAH 162
Score = 62.6 bits (153), Expect = 8e-11
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 526 KPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIV-EARREGDIVSMYANTDLAQREL 584
+ +N+G+G + ++ T G +V I S Y ++ A+ L
Sbjct: 215 QEKVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELL 274
Query: 585 GWSARCTVK 593
+S
Sbjct: 275 DFSTDYNFA 283
Score = 62.2 bits (152), Expect = 1e-10
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 2 INKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIV-EARREGDIVSMYANTDLAQKELGWS 60
++ +N+G+G + ++ T G +V I S Y ++ A++ L +S
Sbjct: 218 VSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFS 277
Query: 61 AR 62
Sbjct: 278 TD 279
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 112 bits (282), Expect = 2e-27
Identities = 50/242 (20%), Positives = 85/242 (35%), Gaps = 44/242 (18%)
Query: 223 KVVAIDNFV--NSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVI 280
KVV IDNF H+ D P + F + D + ++ D V+
Sbjct: 47 KVVGIDNFATGRREHLKDHP------------NLTFVEGSIADHALVNQLIGDLQPDAVV 94
Query: 281 HFAAVKAVGESMQEPLMYYKN---NLIATINLLEVMKSHGVYQLVFSSSCTVYG-EPQFL 336
H AA S ++P +Y + N + N+++ K + V + V+ + YG +P
Sbjct: 95 HTAA------SYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQ 148
Query: 337 PITEDHPTGNIKNFYNLGTGQGTSVLQL-------LRTFERVTGNKPVP---YIFYN-LG 385
P+ DHP + Y + L+ R V G + V IF+ L
Sbjct: 149 PVRLDHPRNPANSSYAISKSANEDYLEYSGLDFVTFRLAN-VVGPRNVSGPLPIFFQRLS 207
Query: 386 TGQGTSVLQLLRTF----ERVTGN----KPVPYIFYNLGTGQGTSVLQLLRTFERVTGKP 437
G+ V + R F + V + Y+ +G ++ +L P
Sbjct: 208 EGKKCFVTKARRDFVFVKDLARATVRAVDGVGHGAYHFSSGTDVAIKELYDAVVEAMALP 267
Query: 438 VP 439
Sbjct: 268 SY 269
Score = 98.9 bits (247), Expect = 7e-23
Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 21/139 (15%)
Query: 51 DLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKN---NLIATINLLEVMKSH 107
+A L D V+H AA S ++P +Y + N + N+++ K +
Sbjct: 74 SIADHALVNQLIGDLQPDAVVHTAA------SYKDPDDWYNDTLTNCVGGSNVVQAAKKN 127
Query: 108 GVYQLVFSSSCTVYG-EPQFLPITEDHPTGNIKNVYGKTKHFIEEMLK--DLSKAHKEWN 164
V + V+ + YG +P P+ DHP + Y +K E+ L+ L +
Sbjct: 128 NVGRFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANEDYLEYSGL-------D 180
Query: 165 IISLRYFNPVGAHPSGRIG 183
++ R N VG P G
Sbjct: 181 FVTFRLANVVG--PRNVSG 197
Score = 61.1 bits (149), Expect = 3e-10
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 528 VPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEAR--REGDIVSMYANTDLAQRELG 585
V + Y+ +G ++ +L P E R D S+ + ++ G
Sbjct: 238 VGHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDPSRTIQDFG 297
Query: 586 WSARCTVK 593
+K
Sbjct: 298 KIEFTPLK 305
Score = 59.6 bits (145), Expect = 7e-10
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 3 NKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEAR--REGDIVSMYANTDLAQKELGWS 60
+ Y+ +G ++ +L P E R D S+ + ++ G
Sbjct: 240 HGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDPSRTIQDFGKI 299
Query: 61 AR 62
Sbjct: 300 EF 301
Score = 36.5 bits (85), Expect = 0.021
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 438 VPYIFYNLGTGQGTSVLQLLRTFERVTGKPVP 469
V + Y+ +G ++ +L P
Sbjct: 238 VGHGAYHFSSGTDVAIKELYDAVVEAMALPSY 269
Score = 36.5 bits (85), Expect = 0.021
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 468 VPYIFYNLGTGQGTSVLQLLRTFERVTGKPVP 499
V + Y+ +G ++ +L P
Sbjct: 238 VGHGAYHFSSGTDVAIKELYDAVVEAMALPSY 269
Score = 35.3 bits (82), Expect = 0.054
Identities = 4/32 (12%), Positives = 9/32 (28%)
Query: 351 YNLGTGQGTSVLQLLRTFERVTGNKPVPYIFY 382
Y+ +G ++ +L P
Sbjct: 243 YHFSSGTDVAIKELYDAVVEAMALPSYPEPEI 274
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 111 bits (280), Expect = 5e-27
Identities = 52/267 (19%), Positives = 90/267 (33%), Gaps = 45/267 (16%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
KVV +DNF + H + + + F D+ + + +D V+H
Sbjct: 53 KVVGLDNF-ATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNAC--AGVDYVLHQ 109
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
AA+ +V S+ +P+ N+ +N+L + V +++S + YG+ LP ED
Sbjct: 110 AALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDT 169
Query: 343 PTGNIKNFYNLGTGQGTSVL---QLLRTFERVTGNKPVPYI---FYNL-GTGQ---GTSV 392
G + Y + F R G I ++N+ G Q G
Sbjct: 170 I-GKPLSPY------AVTKYVNELYADVFSRCYG---FSTIGLRYFNVFGRRQDPNGAYA 219
Query: 393 LQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERV------------TGKPVPY 440
+ + + YI G G+ + R F + G
Sbjct: 220 AVIPKWTSSMIQGDD-VYIN---GDGETS------RDFCYIENTVQANLLAATAGLDARN 269
Query: 441 IFYNLGTGQGTSVLQLLRTFERVTGKP 467
YN+ G TS+ QL +
Sbjct: 270 QVYNIAVGGRTSLNQLFFALRDGLAEN 296
Score = 105 bits (265), Expect = 4e-25
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 40 EGDIVSMYANTDLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATIN 99
+GDI N D +D V+H AA+ +V S+ +P+ N+ +N
Sbjct: 87 QGDI----RNLDDCNNAC-------AGVDYVLHQAALGSVPRSINDPITSNATNIDGFLN 135
Query: 100 LLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKA 159
+L + V +++S + YG+ LP ED G + Y TK+ E S+
Sbjct: 136 MLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTI-GKPLSPYAVTKYVNELYADVFSRC 194
Query: 160 HKEWNIISLRYFN 172
+ ++ I LRYFN
Sbjct: 195 YG-FSTIGLRYFN 206
Score = 54.2 bits (131), Expect = 5e-08
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 524 TGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGK-----PVPYIVEARREGDIVSMYANTD 578
G YN+ G TS+ QL + + REGD+ A+
Sbjct: 263 AGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADIS 322
Query: 579 LAQRELGWSARCTVK 593
A + LG++ + V
Sbjct: 323 KAAKLLGYAPKYDVS 337
Score = 52.3 bits (126), Expect = 2e-07
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 3 NKFYNLGTGQGTSVLQLLRTFERVTGK-----PVPYIVEARREGDIVSMYANTDLAQKEL 57
N+ YN+ G TS+ QL + + REGD+ A+ A K L
Sbjct: 269 NQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLL 328
Query: 58 GWSAR 62
G++ +
Sbjct: 329 GYAPK 333
Score = 33.8 bits (78), Expect = 0.14
Identities = 10/39 (25%), Positives = 12/39 (30%)
Query: 372 TGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGNKPVPY 410
T YN+ G TS+ QL V Y
Sbjct: 262 TAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSY 300
Score = 33.4 bits (77), Expect = 0.17
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 464 TGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKP 497
G YN+ G TS+ QL +
Sbjct: 263 AGLDARNQVYNIAVGGRTSLNQLFFALRDGLAEN 296
Score = 32.2 bits (74), Expect = 0.39
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 351 YNLGTGQGTSVLQLLRTFERVTGNKPVPY 379
YN+ G TS+ QL V Y
Sbjct: 272 YNIAVGGRTSLNQLFFALRDGLAENGVSY 300
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 105 bits (263), Expect = 2e-25
Identities = 35/182 (19%), Positives = 60/182 (32%), Gaps = 20/182 (10%)
Query: 40 EGDIVSMYANTDLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLM-YYKNNLIATI 98
D+ D D D +IH V S++ P + N+I
Sbjct: 48 ACDL------ADAQA-----VHDLVKDCDGIIHLGGV-----SVERPWNDILQANIIGAY 91
Query: 99 NLLEVMKSHGVYQLVFSSSCTVYGE-PQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLS 157
NL E ++ G ++VF+SS G P+ I + P ++YG +K F E++
Sbjct: 92 NLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTEVPR-RPDSLYGLSKCFGEDLASLYY 150
Query: 158 KAHKEWNIISLRYFNPVGAHPSGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYET 217
+++R + R+ + V+GA T
Sbjct: 151 HKFD-IETLNIRIGSCFPKPKDARMMATWLSVDDFMRLMKRAFVAPKLGCTVVYGASANT 209
Query: 218 ED 219
E
Sbjct: 210 ES 211
Score = 91.2 bits (227), Expect = 9e-21
Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 30/127 (23%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKK---VDFYSCDLVDKNRLGEIFAKHDIDCV 279
+V D G + +CDL D + ++ D D +
Sbjct: 28 EVRLSDIVD------------------LGAAEAHEEIVACDLADAQAVHDLVK--DCDGI 67
Query: 280 IHFAAVKAVGESMQEPLM-YYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGE-PQFLP 337
IH V S++ P + N+I NL E ++ G ++VF+SS G P+
Sbjct: 68 IHLGGV-----SVERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTR 122
Query: 338 ITEDHPT 344
I + P
Sbjct: 123 IDTEVPR 129
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 105 bits (265), Expect = 2e-25
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 65 HDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEP 124
D++ + H A + E + +M NN + LL + +++SS YG
Sbjct: 67 GDVEAIFHEGACSSTTEWDGKYMM--DNNYQYSKELLHYCLEREI-PFLYASSAATYGGR 123
Query: 125 QFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFN 172
I + NVYG +K +E ++ + I+ RYFN
Sbjct: 124 TSDFIESREYEKPL-NVYGYSKFLFDEYVRQILPEAN-SQIVGFRYFN 169
Score = 93.8 bits (234), Expect = 3e-21
Identities = 46/273 (16%), Positives = 81/273 (29%), Gaps = 80/273 (29%)
Query: 218 EDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGKK----VDFYSCDLVDK----NRLGE 269
+ G ++ +DN G K VD D +DK ++
Sbjct: 21 DKGITDILVVDNLK------------------DGTKFVNLVDLNIADYMDKEDFLIQIMA 62
Query: 270 IFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTV 329
D++ + H A + E + +M NN + LL + +++SS
Sbjct: 63 GEEFGDVEAIFHEGACSSTTEWDGKYMM--DNNYQYSKELLHYCLEREI-PFLYASSAAT 119
Query: 330 YGEPQFLPITEDHPTGNIKNFYNLGTGQGTSVL---QLLRTFERVTGNKPVPYIFYNL-G 385
YG I + N Y G S + +R ++ V + ++N+ G
Sbjct: 120 YGGRTSDFIESREYEKPL-NVY------GYSKFLFDEYVRQILPEANSQIVGFRYFNVYG 172
Query: 386 -----TGQGTSVLQLLRTFERVTGNKPVPYIF---------------------------- 412
G SV ++ + P +F
Sbjct: 173 PREGHKGSMASV--AFHLNTQLNNGES-PKLFEGSENFKRDFVYVGDVADVNLWFLENGV 229
Query: 413 ---YNLGTGQGTSVLQLLRTFERVTGKP-VPYI 441
+NLGTG+ S + K + YI
Sbjct: 230 SGIFNLGTGRAESFQAVADATLAYHKKGQIEYI 262
Score = 46.0 bits (110), Expect = 1e-05
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 533 YNLGTGQGTSVLQLLRTFERVTGKPVPYIV---EARREGDIVSMYANTDLAQRELGWSAR 589
+NLGTG+ S + K + + + A+ +
Sbjct: 233 FNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPF 292
Query: 590 CTVK 593
TV
Sbjct: 293 KTVA 296
Score = 45.7 bits (109), Expect = 2e-05
Identities = 8/64 (12%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 2 INKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIV---EARREGDIVSMYANTDLAQKELG 58
++ +NLGTG+ S + K + + + A+ +
Sbjct: 229 VSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGY 288
Query: 59 WSAR 62
Sbjct: 289 DKPF 292
Score = 31.8 bits (73), Expect = 0.53
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 473 YNLGTGQGTSVLQLLRTFERVTGKP-VPYI 501
+NLGTG+ S + K + YI
Sbjct: 233 FNLGTGRAESFQAVADATLAYHKKGQIEYI 262
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 105 bits (265), Expect = 3e-25
Identities = 35/163 (21%), Positives = 68/163 (41%), Gaps = 11/163 (6%)
Query: 51 DLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVY 110
D++ ++ A + ID + H A + + ++P + YK N+ T N+LE K H V
Sbjct: 47 DVSNRDEIDRAVEKYSIDAIFHLAGI-LSAKGEKDPALAYKVNMNGTYNILEAAKQHRVE 105
Query: 111 QLVFSSSCTVYG-EPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLR 169
++V S+ V+G E + T ++G TK E + + + ++ SLR
Sbjct: 106 KVVIPSTIGVFGPETPKNKVPSITITRPR-TMFGVTKIAAELLGQYYYEKFG-LDVRSLR 163
Query: 170 YFNPVGAHPSGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFG 212
Y + +PT T+ + A+ + + +
Sbjct: 164 YPGIISYKA------EPTAGTTDYAVEIFYYAVKREK-YKCYL 199
Score = 98.6 bits (246), Expect = 9e-23
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 252 KKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLE 311
+ F + D+ +++ + K+ ID + H A + + ++P + YK N+ T N+LE
Sbjct: 39 GGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGI-LSAKGEKDPALAYKVNMNGTYNILE 97
Query: 312 VMKSHGVYQLVFSSSCTVYG-EPQFLPITEDHPT 344
K H V ++V S+ V+G E + T
Sbjct: 98 AAKQHRVEKVVIPSTIGVFGPETPKNKVPSITIT 131
Score = 37.7 bits (88), Expect = 0.007
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 2 INKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMY---ANTDLAQKELG 58
+ YN+ T + +L + + E R I + + ++ A E G
Sbjct: 230 LRNGYNV-TAYTFTPSELYSKIKERIPEFEIEYKEDFR-DKIAATWPESLDSSEASNEWG 287
Query: 59 WSAR 62
+S
Sbjct: 288 FSIE 291
Score = 36.5 bits (85), Expect = 0.021
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 526 KPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMY---ANTDLAQR 582
K V YN+ T + +L + + E R I + + ++ A
Sbjct: 227 KLVLRNGYNV-TAYTFTPSELYSKIKERIPEFEIEYKEDFR-DKIAATWPESLDSSEASN 284
Query: 583 ELGWSAR 589
E G+S
Sbjct: 285 EWGFSIE 291
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 105 bits (264), Expect = 4e-25
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 66 DIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQ 125
D+ V H A+ K+V S ++PL Y N + + +LL + S GV ++V S+C VYG+
Sbjct: 69 DVRLVYHLASHKSVPRSFKQPLDYLDN-VDSGRHLLALCTSVGVPKVVVGSTCEVYGQAD 127
Query: 126 FLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFN 172
LP ED P ++ Y +K +E + +A + +R+FN
Sbjct: 128 TLPTPEDSPLS-PRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFN 173
Score = 94.9 bits (237), Expect = 2e-21
Identities = 54/262 (20%), Positives = 95/262 (36%), Gaps = 51/262 (19%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKV-DFYSCDLVDKNRLGEIFAKHDIDCVIH 281
+V +D+ +F K V + DL D+ V H
Sbjct: 33 EVTVLDDLRV-----PPMIPPEGTGKFLEKPVLELEERDL------------SDVRLVYH 75
Query: 282 FAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITED 341
A+ K+V S ++PL Y N + + +LL + S GV ++V S+C VYG+ LP ED
Sbjct: 76 LASHKSVPRSFKQPLDYLDN-VDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPED 134
Query: 342 HPTGNIKNFYNLG--TGQGTSVLQLLRTFERVTGNKPVPY--IFYNLGTGQGTS------ 391
P + ++ Y + + +R + V F G G+
Sbjct: 135 SPL-SPRSPYAASKVGLE-----MVAGAHQRASVAPEVGIVRFFNVYGPGERPDALVPRL 188
Query: 392 VLQLLRTFERVTGNKPVPYIFYNLGTGQGT----SVLQLLRTFERVTGKPVPYIFYNLGT 447
LL +P + G G+ + ++ + +P+P + N G+
Sbjct: 189 CANLLT-------RNELP-VE---GDGEQRRDFTYITDVVDKLVALANRPLPSV-VNFGS 236
Query: 448 GQGTSVLQLLRTFERVTGKPVP 469
GQ SV ++R + +
Sbjct: 237 GQSLSVNDVIRILQATSPAAEV 258
Score = 50.2 bits (121), Expect = 9e-07
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 533 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGW 586
N G+GQ SV ++R + + + R +I A+T L R++G
Sbjct: 232 VNFGSGQSLSVNDVIRILQATSPAAEV-ARKQPRPNEITEFRADTALQTRQIGE 284
Score = 49.8 bits (120), Expect = 1e-06
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 6 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGW 59
N G+GQ SV ++R + + + R +I A+T L +++G
Sbjct: 232 VNFGSGQSLSVNDVIRILQATSPAAEV-ARKQPRPNEITEFRADTALQTRQIGE 284
Score = 32.1 bits (74), Expect = 0.51
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 341 DHPTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYI 380
+ P ++ N G+GQ SV ++R + + V
Sbjct: 225 NRPLPSV---VNFGSGQSLSVNDVIRILQATSPAAEVARK 261
Score = 31.4 bits (72), Expect = 0.80
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 473 YNLGTGQGTSVLQLLRTFERVTGKPVP 499
N G+GQ SV ++R + +
Sbjct: 232 VNFGSGQSLSVNDVIRILQATSPAAEV 258
Score = 31.4 bits (72), Expect = 0.81
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 382 YNLGTGQGTSVLQLLRTFERVTGNKPVPYI 411
N G+GQ SV ++R + + V
Sbjct: 232 VNFGSGQSLSVNDVIRILQATSPAAEVARK 261
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 102 bits (256), Expect = 7e-24
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 65 HDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEP 124
D++ + H A + E + +M NN + LL + +++SS YG
Sbjct: 114 GDVEAIFHEGACSSTTEWDGKYMM--DNNYQYSKELLHYCLEREI-PFLYASSAATYGGR 170
Query: 125 QFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFN 172
I + NV+G +K +E ++ + I+ RYFN
Sbjct: 171 TSDFIESREYEKPL-NVFGYSKFLFDEYVRQILPEAN-SQIVGFRYFN 216
Score = 89.3 bits (222), Expect = 2e-19
Identities = 53/299 (17%), Positives = 91/299 (30%), Gaps = 76/299 (25%)
Query: 202 IGSKPHFTVFGADYETEDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGKK----VDFY 257
IGS + + G ++ +DN G K VD
Sbjct: 58 IGS--NI----VKALNDKGITDILVVDNLK------------------DGTKFVNLVDLN 93
Query: 258 SCDLVDK----NRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVM 313
D +DK ++ D++ + H A + E + +M NN + LL
Sbjct: 94 IADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMM--DNNYQYSKELLHYC 151
Query: 314 KSHGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNFYNLGTGQGTSVL---QLLRTFER 370
+ +++SS YG I + N + G S + +R
Sbjct: 152 LEREI-PFLYASSAATYGGRTSDFIESREYEKPL-NVF------GYSKFLFDEYVRQILP 203
Query: 371 VTGNKPVPYIFYNL-G-----TGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGT--- 421
++ V + ++N+ G G SV ++ + P +F G+
Sbjct: 204 EANSQIVGFRYFNVYGPREGHKGSMASV--AFHLNTQLNNGES-PKLFE--GSENFKRDF 258
Query: 422 --------SVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVP-YI 471
L L V+G +NLGTG+ S + K YI
Sbjct: 259 VYVGDVADVNLWFLEN--GVSG------IFNLGTGRAESFQAVADATLAYHKKGQIEYI 309
Score = 43.8 bits (104), Expect = 1e-04
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 533 YNLGTGQGTSVLQLLRTFERVTGKPVPYIV---EARREGDIVSMYANTDLAQRELGWSAR 589
+NLGTG+ S + K + + + A+ +
Sbjct: 280 FNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPF 339
Query: 590 CTVK 593
TV
Sbjct: 340 KTVA 343
Score = 43.8 bits (104), Expect = 1e-04
Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 3/66 (4%)
Query: 2 INKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIV---EARREGDIVSMYANTDLAQKELG 58
++ +NLGTG+ S + K + + + A+ +
Sbjct: 276 VSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGY 335
Query: 59 WSARCT 64
T
Sbjct: 336 DKPFKT 341
Score = 31.1 bits (71), Expect = 0.91
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 473 YNLGTGQGTSVLQLLRTFERVTGKPVP-YI 501
+NLGTG+ S + K YI
Sbjct: 280 FNLGTGRAESFQAVADATLAYHKKGQIEYI 309
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 101 bits (254), Expect = 1e-23
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
V+ +DNF ++ H + + + F D+ D ++ +D V+H
Sbjct: 51 VVIGLDNF-STGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVM--KGVDHVLHQ 107
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
AA+ +V S+ +P+ N+ +N+L K+ V +++S + YG+ LP E++
Sbjct: 108 AALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEEN 167
Query: 343 P 343
Sbjct: 168 I 168
Score = 100 bits (251), Expect = 3e-23
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Query: 61 ARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTV 120
+ +D V+H AA+ +V S+ +P+ N+ +N+L K+ V +++S +
Sbjct: 95 EQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSST 154
Query: 121 YGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFN 172
YG+ LP E++ GN + Y TK+ E + ++ + + I LRYFN
Sbjct: 155 YGDHPALPKVEENI-GNPLSPYAVTKYVNEIYAQVYARTYG-FKTIGLRYFN 204
Score = 50.3 bits (121), Expect = 8e-07
Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 5/75 (6%)
Query: 524 TGKPVPYIFYNLGTGQGTSVLQLLRTFERVTG-----KPVPYIVEARREGDIVSMYANTD 578
YN+ G T++ +L + R GD+ A+
Sbjct: 261 AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVT 320
Query: 579 LAQRELGWSARCTVK 593
A L + ++
Sbjct: 321 KAIDLLKYRPNIKIR 335
Score = 48.0 bits (115), Expect = 5e-06
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 3 NKFYNLGTGQGTSVLQLLRTFERVTG-----KPVPYIVEARREGDIVSMYANTDLAQKEL 57
+ YN+ G T++ +L + R GD+ A+ A L
Sbjct: 267 DNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLL 326
Query: 58 GWS 60
+
Sbjct: 327 KYR 329
Score = 32.2 bits (74), Expect = 0.41
Identities = 5/39 (12%), Positives = 9/39 (23%)
Query: 372 TGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGNKPVPY 410
YN+ G T++ +L
Sbjct: 260 LAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHID 298
Score = 31.5 bits (72), Expect = 0.75
Identities = 5/35 (14%), Positives = 9/35 (25%)
Query: 403 TGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKP 437
YN+ G T++ +L
Sbjct: 260 LAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLI 294
Score = 31.1 bits (71), Expect = 0.99
Identities = 5/34 (14%), Positives = 9/34 (26%)
Query: 434 TGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKP 467
YN+ G T++ +L
Sbjct: 261 AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLI 294
Score = 31.1 bits (71), Expect = 0.99
Identities = 5/34 (14%), Positives = 9/34 (26%)
Query: 464 TGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKP 497
YN+ G T++ +L
Sbjct: 261 AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLI 294
Score = 29.9 bits (68), Expect = 2.1
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 351 YNLGTGQGTSVLQLLRTFERVTGNKPVPY 379
YN+ G T++ +L
Sbjct: 270 YNVAVGDRTTLNELSGYIYDELNLIHHID 298
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 100 bits (252), Expect = 4e-23
Identities = 66/414 (15%), Positives = 116/414 (28%), Gaps = 135/414 (32%)
Query: 202 IGSKPHFTVFGADYETEDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGKK-------- 253
+GS + E G +V +DN + +K
Sbjct: 44 VGS--NL----VKRLLELGVNQVHVVDNL------------------LSAEKINVPDHPA 79
Query: 254 VDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVM 313
V F + D L + ++D V H A S+ +PL ++NN + T+ L E +
Sbjct: 80 VRFSETSITDDALLASLQDEYDY--VFHLATYHGNQSSIHDPLADHENNTLTTLKLYERL 137
Query: 314 KSH-GVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNFYNLGTGQGTSVLQLLRTFERVT 372
K + ++V+S++ E F T V+
Sbjct: 138 KHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDI------------------------VS 173
Query: 373 GNKPV-PYIFYNLGTGQGTSVL---QLLRTFERVTGNKPVPY----IFYNLGTGQGTSVL 424
+ PY S + + + +P G G+
Sbjct: 174 LHNNDSPY---------SMSKIFGEFYSVYYHKQHQ---LPTVRARFQNVYGPGEILGAG 221
Query: 425 QLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGT--- 481
+ T V P F + + L+ G P+P + G T
Sbjct: 222 RWRGTPATVWRNVTP-TF----------IYKALK------GMPLP-LE---NGGVATRDF 260
Query: 482 -SVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQG 540
V + P YN+ +G+ TS+ L +TG
Sbjct: 261 IFVEDVANGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNNTELDR-------- 312
Query: 541 TSVLQLLRTFERVTGKPVPYIVEARREGDIV-SMYANTDLAQRELGWSARCTVK 593
+R D + + + A+RELG+SA ++
Sbjct: 313 ----------------------LPKRPWDNSGKRFGSPEKARRELGFSADVSID 344
Score = 89.3 bits (222), Expect = 2e-19
Identities = 36/170 (21%), Positives = 60/170 (35%), Gaps = 17/170 (10%)
Query: 61 ARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSH-GVYQLVFSSSCT 119
A + D V H A S+ +PL ++NN + T+ L E +K + ++V+S++
Sbjct: 94 ASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGC 153
Query: 120 VYGEPQFLPITEDHPTGNIKNV-----YGKTKHFIEEMLKDLSKAHKEWNIISLRYFN-- 172
E F T + Y +K F E K H+ + R+ N
Sbjct: 154 SIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQ-LPTVRARFQNVY 212
Query: 173 -PVGAHPSGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGT 221
P +GR P + N+ P A+ P + G
Sbjct: 213 GPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMP-LPLEN------GGV 255
Score = 55.0 bits (133), Expect = 3e-08
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 6 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIV-SMYANTDLAQKELGWSARCT 64
YN+ +G+ TS+ L +TG +R D + + + A++ELG+SA +
Sbjct: 283 YNIASGKETSIADLATKINEITGNNTELDRLPKRPWDNSGKRFGSPEKARRELGFSADVS 342
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 97.7 bits (244), Expect = 1e-22
Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 8/152 (5%)
Query: 33 YIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKN 92
I + + + + H I + AA+ + + P +
Sbjct: 35 DIRKLNTDVVNSGPFEVVNALDFNQIEHLVEVHKITDIYLMAAL-LSATAEKNPAFAWDL 93
Query: 93 NLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEM 152
N+ + ++L + K+ + ++ + SS V+G T + VYG +K E
Sbjct: 94 NMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAGERW 153
Query: 153 LKDLSKAHKEWNI--ISLRYFNPVG--AHPSG 180
+ H + + S+RY + P G
Sbjct: 154 CEYY---HNIYGVDVRSIRYPGLISWSTPPGG 182
Score = 97.7 bits (244), Expect = 1e-22
Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 9/129 (6%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
K+ +N + S IR + F + +D N++ + H I +
Sbjct: 24 KLYGTENVIAS--------DIRKLNTDVVNSGPFEVVNALDFNQIEHLVEVHKITDIYLM 75
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
AA+ + + P + N+ + ++L + K+ + ++ + SS V+G T +
Sbjct: 76 AAL-LSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQY 134
Query: 343 PTGNIKNFY 351
Y
Sbjct: 135 TIMEPSTVY 143
Score = 34.6 bits (80), Expect = 0.069
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 2 INKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEAR-REGDIVSMYANTDLAQKELGWS 60
I+ YNL T + + + Y + R + D + A+++ W
Sbjct: 236 IHSSYNLAAMSFTPTEIANEIKKHIPEFTITYEPDFRQKIADSWPASIDDSQAREDWDWK 295
Score = 34.2 bits (79), Expect = 0.12
Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 1/73 (1%)
Query: 516 LLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEAR-REGDIVSMY 574
+ + K + YNL T + + + Y + R + D
Sbjct: 223 TINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEFTITYEPDFRQKIADSWPAS 282
Query: 575 ANTDLAQRELGWS 587
+ A+ + W
Sbjct: 283 IDDSQAREDWDWK 295
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 93.2 bits (232), Expect = 2e-21
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 20/138 (14%)
Query: 40 EGDIVSMYANTDLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPL-MYYKNNLIATI 98
+ D+ D D ++H S+++P + N+I
Sbjct: 49 QCDL------ADANA-----VNAMVAGCDGIVHLGG-----ISVEKPFEQILQGNIIGLY 92
Query: 99 NLLEVMKSHGVYQLVFSSSCTVYGE-PQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLS 157
NL E ++HG ++VF+SS G PQ + D P +YG +K F E + +
Sbjct: 93 NLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPDVPA-RPDGLYGVSKCFGENLARMYF 151
Query: 158 KAHKEWNIISLRYFNPVG 175
+ +R +
Sbjct: 152 DKFGQ-ETALVRIGSCTP 168
Score = 85.5 bits (212), Expect = 8e-19
Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 23/125 (18%)
Query: 222 GKVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIH 281
+++ + + G + CDL D N + + A D ++H
Sbjct: 27 AEILRLADLSPLDPAGP--------------NEECVQCDLADANAVNAMVA--GCDGIVH 70
Query: 282 FAAVKAVGESMQEPL-MYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGE-PQFLPIT 339
S+++P + N+I NL E ++HG ++VF+SS G PQ +
Sbjct: 71 LGG-----ISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLG 125
Query: 340 EDHPT 344
D P
Sbjct: 126 PDVPA 130
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 87.7 bits (218), Expect = 6e-19
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 65 HDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEP 124
D + H AAV +M + K N A +NLLE+ +S +++++SS VYG
Sbjct: 89 LHFDYLFHQAAVSDT--TMLNQELVMKTNYQAFLNLLEIARSKKA-KVIYASSAGVYGNT 145
Query: 125 QFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFN 172
+ P + +NVYG +K ++E + + + LRYFN
Sbjct: 146 K-APNVVGKN-ESPENVYGFSKLCMDEFVL---SHSNDNVQVGLRYFN 188
Score = 87.7 bits (218), Expect = 7e-19
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 202 IGSKPHFTVFGADYETEDGTG-KVVAIDNFVN-SVHIGDTPCSIRAIEQFTGKKVDFYSC 259
+GS + A + E+ KVV +D F + ++ + P S+ + G K + +
Sbjct: 22 VGS--NL----AFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAA 75
Query: 260 DLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVY 319
D+ + L K D + H AAV +M + K N A +NLLE+ +S
Sbjct: 76 DINNPLDL-RRLEKLHFDYLFHQAAVSDT--TMLNQELVMKTNYQAFLNLLEIARSKKA- 131
Query: 320 QLVFSSSCTVYGEPQFLPITEDHP 343
+++++SS VYG + P
Sbjct: 132 KVIYASSAGVYGNTK-APNVVGKN 154
Score = 54.2 bits (131), Expect = 4e-08
Identities = 8/61 (13%), Positives = 22/61 (36%)
Query: 533 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTV 592
YN+G Q S +++ + G ++ A+ + +L ++ +
Sbjct: 251 YNVGYSQARSYNEIVSILKEHLGDFKVTYIKNPYAFFQKHTQAHIEPTILDLDYTPLYDL 310
Query: 593 K 593
+
Sbjct: 311 E 311
Score = 53.5 bits (129), Expect = 1e-07
Identities = 8/59 (13%), Positives = 20/59 (33%)
Query: 6 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCT 64
YN+G Q S +++ + G ++ A+ + +L ++
Sbjct: 251 YNVGYSQARSYNEIVSILKEHLGDFKVTYIKNPYAFFQKHTQAHIEPTILDLDYTPLYD 309
Score = 36.5 bits (85), Expect = 0.020
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 351 YNLGTGQGTSVLQLLRTFERVTGNKPVPYI 380
YN+G Q S +++ + G+ V YI
Sbjct: 251 YNVGYSQARSYNEIVSILKEHLGDFKVTYI 280
Score = 36.5 bits (85), Expect = 0.020
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 382 YNLGTGQGTSVLQLLRTFERVTGNKPVPYI 411
YN+G Q S +++ + G+ V YI
Sbjct: 251 YNVGYSQARSYNEIVSILKEHLGDFKVTYI 280
Score = 33.8 bits (78), Expect = 0.13
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 413 YNLGTGQGTSVLQLLRTFERVTGKP-VPYI 441
YN+G Q S +++ + G V YI
Sbjct: 251 YNVGYSQARSYNEIVSILKEHLGDFKVTYI 280
Score = 33.8 bits (78), Expect = 0.13
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 443 YNLGTGQGTSVLQLLRTFERVTGKP-VPYI 471
YN+G Q S +++ + G V YI
Sbjct: 251 YNVGYSQARSYNEIVSILKEHLGDFKVTYI 280
Score = 33.8 bits (78), Expect = 0.13
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 473 YNLGTGQGTSVLQLLRTFERVTGKP-VPYI 501
YN+G Q S +++ + G V YI
Sbjct: 251 YNVGYSQARSYNEIVSILKEHLGDFKVTYI 280
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 75.1 bits (185), Expect = 1e-14
Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 16/159 (10%)
Query: 62 RCTHDIDCVIHFAAVKAVGESMQE-PLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTV 120
+ T +D V + AA +Q + NN + + N++E + +G+ + ++SS +
Sbjct: 89 KVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACI 148
Query: 121 YGEPQFLPITED-------HPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNP 173
Y E + L T P ++ +G K EE+ K +K R+ N
Sbjct: 149 YPEFKQLETTNVSLKESDAWPAE-PQDAFGLEKLATEELCKHYNKDFG-IECRIGRFHNI 206
Query: 174 VGAHPSGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFG 212
G P G K+ + + F ++G
Sbjct: 207 YG--PFGTWKGGREKAPAAFC---RKAQTSTDR-FEMWG 239
Score = 57.7 bits (140), Expect = 5e-09
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 255 DFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQE-PLMYYKNNLIATINLLEVM 313
+F+ DL ++ +D V + AA +Q + NN + + N++E
Sbjct: 75 EFHLVDLRVMENCLKVT--EGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAA 132
Query: 314 KSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
+ +G+ + ++SS +Y E + L T
Sbjct: 133 RINGIKRFFYASSACIYPEFKQLETTNVS 161
Score = 37.3 bits (87), Expect = 0.013
Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 7 NLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSAR 62
N+G+ + S+ ++ K +P I + ++ +L +++LGW+
Sbjct: 270 NIGSDEMVSMNEMAEMVLSFEEKKLP-IHHIPGPEGVRGRNSDNNLIKEKLGWAPN 324
Score = 36.9 bits (86), Expect = 0.017
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 534 NLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSAR 589
N+G+ + S+ ++ K +P I + ++ +L + +LGW+
Sbjct: 270 NIGSDEMVSMNEMAEMVLSFEEKKLP-IHHIPGPEGVRGRNSDNNLIKEKLGWAPN 324
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 71.9 bits (176), Expect = 1e-13
Identities = 18/110 (16%), Positives = 44/110 (40%), Gaps = 20/110 (18%)
Query: 66 DIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQ 125
D ++H A V + + N+ ++L+++ + + SS ++
Sbjct: 46 KADFIVHLAGVN----RPEHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSS-SIQATQ- 99
Query: 126 FLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVG 175
D+P YG++K E++L++ ++ + + R+ N G
Sbjct: 100 ------DNP-------YGESKLQGEQLLREYAEEYGN-TVYIYRWPNLFG 135
Score = 67.3 bits (164), Expect = 4e-12
Identities = 31/220 (14%), Positives = 69/220 (31%), Gaps = 29/220 (13%)
Query: 263 DKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLV 322
+ L D ++H A V + + N+ ++L+++ + +
Sbjct: 36 KEEELESALL--KADFIVHLAGVN----RPEHDKEFSLGNVSYLDHVLDILTRNTKKPAI 89
Query: 323 FSSSCTVYGEPQFLPITEDHPTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFY 382
SS ++ D+P G K G+ QLLR + GN Y +
Sbjct: 90 LLSS-SIQATQ-------DNPYGESKL-----QGE-----QLLREYAEEYGNTVYIYRWP 131
Query: 383 NL-GTGQGTSVLQLLRTF-ERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKP--V 438
NL G + ++ TF ++ N+ + N V ++ +R +
Sbjct: 132 NLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRN-VELTLNYVDDIVAEIKRAIEGTPTI 190
Query: 439 PYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTG 478
+ ++ +++ + + L
Sbjct: 191 ENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLDNL 230
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 68.5 bits (168), Expect = 1e-12
Identities = 25/159 (15%), Positives = 46/159 (28%), Gaps = 18/159 (11%)
Query: 61 ARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTV 120
R +D VI A + + L T V ++++ S
Sbjct: 72 ERALRGLDGVIFSAGY--YPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYA 129
Query: 121 YGE-PQFLPITEDHP---TGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGA 176
PQ LP E + K+ Y K ++E ++ ++ I
Sbjct: 130 MPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQARNGLPVVIG---------- 179
Query: 177 HPSGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADY 215
P +GE T + + + G H+ +
Sbjct: 180 IPGMVLGELDIGPTTGRV--ITAIGNGEMTHYVAGQRNV 216
Score = 62.7 bits (153), Expect = 9e-11
Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 5/108 (4%)
Query: 246 IEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIA 305
I++ + + +++D L +D VI A + + L
Sbjct: 50 IQRLAYLEPECRVAEMLDHAGLERALR--GLDGVIFSAGY--YPSRPRRWQEEVASALGQ 105
Query: 306 TINLLEVMKSHGVYQLVFSSSCTVYGE-PQFLPITEDHPTGNIKNFYN 352
T V ++++ S PQ LP E ++ + +
Sbjct: 106 TNPFYAACLQARVPRILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKS 153
Score = 37.3 bits (87), Expect = 0.012
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 5/91 (5%)
Query: 503 YNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIV 562
Y L G + L R + G+P P + ++ L R RV+G+
Sbjct: 239 YLLT-GHNLEMADLTRRIAELLGQPAPQ---PMSMAMARALATLGRLRYRVSGQLPLLDE 294
Query: 563 EARREGDIVSMYANTDLAQRELGWSARCTVK 593
A + + A+ ELG+ + +
Sbjct: 295 TAIEVMA-GGQFLDGRKAREELGFFSTTALD 324
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia
pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Length = 357
Score = 66.4 bits (162), Expect = 5e-12
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 251 GKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLL 310
+ D+ D+N+L E + + V H AA V S EP+ Y N++ T+ LL
Sbjct: 56 ADGMQSEIGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLL 115
Query: 311 E-VMKSHGVYQLVFSSSCTVYGEPQFL-PITEDHPTGNIKNF 350
E + GV +V +S Y +++ E+ G +
Sbjct: 116 EAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPY 157
Score = 48.3 bits (115), Expect = 4e-06
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 65 HDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLE-VMKSHGVYQLVFSSSCTVYGE 123
+ V H AA V S EP+ Y N++ T+ LLE + GV +V +S Y
Sbjct: 79 FQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDN 138
Query: 124 PQFL-PITEDHPTG 136
+++ E+ G
Sbjct: 139 KEWIWGYRENEAMG 152
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 65.7 bits (161), Expect = 1e-11
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 252 KKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLE 311
+F D+ +KN + + K+ D H A A+ S+ P M ++ N+ T+NLLE
Sbjct: 50 GNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLE 109
Query: 312 VMKSHGV-YQLVFSSSCTVYGEPQFLPITED 341
++ + +++SS+ VYG+ + E
Sbjct: 110 AVRQYNSNCNIIYSSTNKVYGDLEQYKYNET 140
Score = 53.7 bits (130), Expect = 7e-08
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 65 HDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGV-YQLVFSSSCTVYGE 123
+ D H A A+ S+ P M ++ N+ T+NLLE ++ + +++SS+ VYG+
Sbjct: 72 YMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGD 131
Query: 124 PQFLPITEDHPTGNIKNVYGKTKHFIEE 151
L + + T K + E
Sbjct: 132 ---LEQYKYNETETRYTCVDKPNGYDES 156
Score = 32.6 bits (75), Expect = 0.33
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 525 GKPVPYIFYNLGTGQG--TSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQR 582
+ +N+G S+L+L + E + + RE D A+
Sbjct: 256 VSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITN 315
Query: 583 ELGWSARCT 591
+ WS + +
Sbjct: 316 AIDWSPKVS 324
Score = 31.8 bits (73), Expect = 0.70
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 6 YNLGTGQG--TSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARC 63
+N+G S+L+L + E + + RE D A+ + WS +
Sbjct: 264 FNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKV 323
Query: 64 T 64
+
Sbjct: 324 S 324
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 58.9 bits (143), Expect = 1e-09
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 8/127 (6%)
Query: 55 KELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVF 114
W D V+ A+ E + PL ++ + + ++ + +++F
Sbjct: 56 IHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK-RIIF 114
Query: 115 SSSCTVYGEPQFLPITEDH------PTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISL 168
S+ VYG EDH P + +Y +K ++ ++ +
Sbjct: 115 PSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG-LQFTLF 173
Query: 169 RYFNPVG 175
R FN +G
Sbjct: 174 RPFNWMG 180
Score = 56.6 bits (137), Expect = 8e-09
Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 15/126 (11%)
Query: 218 EDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTG-KKVDFYSCDLVDKNRLGEIFAKHDI 276
+ +V +D AI +F F D+ + E K
Sbjct: 22 REDHYEVYGLDIG------------SDAISRFLNHPHFHFVEGDISIHSEWIEYHVK-KC 68
Query: 277 DCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFL 336
D V+ A+ E + PL ++ + + ++ + +++F S+ VYG
Sbjct: 69 DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK-RIIFPSTSEVYGMCSDK 127
Query: 337 PITEDH 342
EDH
Sbjct: 128 YFDEDH 133
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase,
structural genomics, STRU genomics consortium, SGC,
lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP:
c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 58.6 bits (142), Expect = 2e-09
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Query: 66 DIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQ 125
++D + H A+ + M P+ K N I T+N+L + K G L+ S+S VYG+P+
Sbjct: 91 EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSE-VYGDPE 149
Query: 126 FLPITED-----HPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVG--AHP 178
P +ED +P G + Y + K E M K + R FN G H
Sbjct: 150 VHPQSEDYWGHVNPIG-PRACYDEGKRVAETMCYAYMKQEGV-EVRVARIFNTFGPRMHM 207
Query: 179 S-GRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFG 212
+ GR+ + ++ Q A+ +P TV+G
Sbjct: 208 NDGRV----------VSNFILQ-ALQGEP-LTVYG 230
Score = 53.2 bits (128), Expect = 1e-07
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Query: 224 VVAIDNFVNSVHIGDTPCSIRAIEQFTG-KKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
V +DNF R +E + G + + + D+V+ + ++D + H
Sbjct: 54 VTVVDNFFTG--------RKRNVEHWIGHENFELINHDVVEPLYI-------EVDQIYHL 98
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITED 341
A+ + M P+ K N I T+N+L + K G L+ S+S VYG+P+ P +ED
Sbjct: 99 ASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSE-VYGDPEVHPQSED 156
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for
structural genomics of infectio diseases, csgid, niaid;
HET: NAD SUC; 3.00A {Bacillus anthracis}
Length = 346
Score = 58.3 bits (142), Expect = 3e-09
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 256 FYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKS 315
F ++ + L + + D+ +++FAA V S++ P+ +Y N+I T+ LLE++K
Sbjct: 79 FVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKK 138
Query: 316 HGVYQLVFSSSCTVYG----EPQFLPITEDHP 343
+ +LV S+ VYG +F TE+ P
Sbjct: 139 YPHIKLVQVSTDEVYGSLGKTGRF---TEETP 167
Score = 44.8 bits (107), Expect = 5e-05
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 64 THDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYG- 122
D+ +++FAA V S++ P+ +Y N+I T+ LLE++K + +LV S+ VYG
Sbjct: 96 ERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGS 155
Query: 123 ---EPQFLPITEDHP 134
+F TE+ P
Sbjct: 156 LGKTGRF---TEETP 167
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 57.1 bits (138), Expect = 7e-09
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 9/123 (7%)
Query: 59 WSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSC 118
W D ++ A+ +++PL ++ + A + ++ +G LVF S+
Sbjct: 84 WVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGK-HLVFPSTS 142
Query: 119 TVYG---EPQFLPITEDHPTGNIKN---VYGKTKHFIEEMLKDLSKAHKEWNIISLRYFN 172
VYG + QF P G I +Y +K ++ ++ + + R FN
Sbjct: 143 EVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGMEGLNFTLF--RPFN 200
Query: 173 PVG 175
+G
Sbjct: 201 WIG 203
Score = 53.6 bits (129), Expect = 8e-08
Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 18/134 (13%)
Query: 218 EDGTGKVVAIDNFVNSV-HIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDI 276
E +V +D + + + ++ F+ D+ E K
Sbjct: 46 ETTDWEVFGMDMQTDRLGDLVKHE------------RMHFFEGDITINKEWVEYHVK-KC 92
Query: 277 DCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYG---EP 333
D ++ A+ +++PL ++ + A + ++ +G LVF S+ VYG +
Sbjct: 93 DVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGK-HLVFPSTSEVYGMCADE 151
Query: 334 QFLPITEDHPTGNI 347
QF P G I
Sbjct: 152 QFDPDASALTYGPI 165
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 7e-08
Identities = 69/469 (14%), Positives = 149/469 (31%), Gaps = 111/469 (23%)
Query: 11 GQGTSVL--QLLRTFERVTGKP--VPYIV--EARREGDIVSMYANTDLAQKELGWSARCT 64
G G + + + +++ + ++ ++ M L Q + W++R
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSD 218
Query: 65 HDIDCVIHFAAVK-AVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGE 123
H + + +++ + ++ Y+N L+ + LL V ++ + F+ SC +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKP--YENCLL--V-LLNV-QNAKAWN-AFNLSCKI--- 268
Query: 124 PQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFN------P---V 174
L T + + T ++ L+ E + L+Y + P +
Sbjct: 269 ---LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDCRPQDLPREVL 323
Query: 175 GAHPS--GRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGTG-----KVVAI 227
+P I E + V T+ + + +++
Sbjct: 324 TTNPRRLSIIAES-IRDGLATWDNWKHV--NCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 228 DNFVNSVHIGDTPCSIRAI----------EQFTGKKVDFYSCDLVDKNRLGEIFAKHDID 277
F S HI P + ++ K YS LV+K + I
Sbjct: 381 --FPPSAHI---PTILLSLIWFDVIKSDVMVVVNKLHK-YS--LVEKQPKESTISIPSIY 432
Query: 278 C----------VIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLV----- 322
+H +++ + P + ++LI L + SH + L
Sbjct: 433 LELKVKLENEYALH----RSIVDHYNIPKTFDSDDLIP-PYLDQYFYSHIGHHLKNIEHP 487
Query: 323 --FSSSCTVYGEPQFLP--ITEDHPTGNIKNFYNLGTGQGTSVLQLLRTFER-VTGNKPV 377
+ V+ + +FL I D N +G + LQ L+ ++ + N P
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWN-------ASGSILNTLQQLKFYKPYICDNDPK 540
Query: 378 PYIFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQL 426
++ + F +P I NL + T +L++
Sbjct: 541 Y-----------ERLVNAILDF--------LPKIEENLICSKYTDLLRI 570
Score = 42.5 bits (99), Expect = 5e-04
Identities = 80/607 (13%), Positives = 175/607 (28%), Gaps = 193/607 (31%)
Query: 11 GQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCV 70
+V LR F + +++E ++V + L + +
Sbjct: 56 MSKDAVSGTLRLFW---------TLLSKQE-EMVQKFVEEVL-RINYKF----------- 93
Query: 71 IHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPIT 130
+ + ++P M + I + L + Q VF+ V +L +
Sbjct: 94 ----LMSPIKTEQRQPSMMTRM-YIEQRDRL-----YNDNQ-VFAKY-NVSRLQPYLKLR 141
Query: 131 ----EDHPTGNIKNVYG-----KTKHFIEEMLKDLS-KAHKEWNI--ISLRYFNPVGAHP 178
E P N+ + G KT ++ + ++ I ++L+ N P
Sbjct: 142 QALLELRPAKNVL-IDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFWLNLKNCN----SP 195
Query: 179 SGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGTGKV---VAIDNFVNSVH 235
+ E K I P + S ++ + + N +
Sbjct: 196 ETVL-EMLQKLLYQIDPNWTSRSDHSSN------IKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 236 IGDTPCSIRAIEQFTGK-KV----------DFYSCDL-----VDKNRLG-------EIFA 272
+ + +A F K+ DF S +D + + +
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 273 K---HDID------CVIHFAAVKAVGESMQEPLM---YYK-------NNLI-ATINLLE- 311
K + + + ES+++ L +K +I +++N+LE
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 312 -VMKSHGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNFYNLGTGQGT-SVLQLLRTF- 368
+ + +V+ P I PT + + V+ L +
Sbjct: 369 AEYRKM--FD-----RLSVF--PPSAHI----PTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 369 --ERVTGNKPVPYIFYNL-----GTGQGTSVL--------QLLRTFERVTGNKPVP---- 409
E+ K ++ + L + +TF+ + +P
Sbjct: 416 LVEK--QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD---SDDLIPPYLD 470
Query: 410 -YIF----YNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNL---------------GTGQ 449
Y + ++L + + L R +F + +G
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRM-----------VFLDFRFLEQKIRHDSTAWNASGS 519
Query: 450 GTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQ 509
+ LQ L+ ++ YI N + ++ + F +P I NL +
Sbjct: 520 ILNTLQQLKFYKP-------YICDN--DPKYERLVNAILDF-------LPKIEENLICSK 563
Query: 510 GTSVLQL 516
T +L++
Sbjct: 564 YTDLLRI 570
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 51.2 bits (123), Expect = 5e-07
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 243 IRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYY--- 299
IR+ + ++ D+ I A D V++ +A+K V S ++P
Sbjct: 80 IRSSFGYINGDFQTFALDIGSIEYDAFIKADGQYDYVLNLSALKHV-RSEKDPFTLMRMI 138
Query: 300 KNNLIATINLLEVMKSHGVYQLVFSSS 326
N+ T ++ G + S+
Sbjct: 139 DVNVFNTDKTIQQSIDAGAKKYFCVST 165
Score = 38.5 bits (90), Expect = 0.005
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 25/101 (24%)
Query: 64 THDIDCVIHFAAVKAVGESMQEPLMYY---KNNLIATINLLEVMKSHGVYQLVFSSSCTV 120
D V++ +A+K V S ++P N+ T ++ G + S+
Sbjct: 110 DGQYDYVLNLSALKHV-RSEKDPFTLMRMIDVNVFNTDKTIQQSIDAGAKKYFCVST--- 165
Query: 121 YGEPQFLPITED---HPTGNIKNVYGKTKHFIEEMLKDLSK 158
D +P N+ G +K +E L S+
Sbjct: 166 -----------DKAANPV----NMMGASKRIMEMFLMRKSE 191
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET:
TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2
PDB: 1g1a_A* 1keu_A* 1bxk_A*
Length = 361
Score = 51.0 bits (123), Expect = 5e-07
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 256 FYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKS 315
F D+ D + IF ++ D V+H AA V S+ P + + N++ T LLEV +
Sbjct: 54 FEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARK 113
Query: 316 H 316
+
Sbjct: 114 Y 114
Score = 37.5 bits (88), Expect = 0.011
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 64 THDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSH 107
+ D V+H AA V S+ P + + N++ T LLEV + +
Sbjct: 71 QYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKY 114
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain
dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A
{Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Length = 337
Score = 50.6 bits (122), Expect = 7e-07
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 256 FYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKS 315
F D+ D L D ++HFAA V S+ ++ + N+ T LL+
Sbjct: 59 FVHGDIRDAGLLARELRGVDA--IVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVD 116
Query: 316 HGVYQLVFSSSCTVYG---EPQFLPITEDHP 343
GV ++V S+ VYG + TE P
Sbjct: 117 AGVGRVVHVSTNQVYGSIDSGSW---TESSP 144
Score = 44.4 bits (106), Expect = 6e-05
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 65 HDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYG-- 122
+D ++HFAA V S+ ++ + N+ T LL+ GV ++V S+ VYG
Sbjct: 75 RGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSI 134
Query: 123 -EPQFLPITEDHP 134
+ TE P
Sbjct: 135 DSGSW---TESSP 144
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 49.7 bits (119), Expect = 1e-06
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 254 VDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVM 313
V D+ + L I + +++ A + Y + + N L +
Sbjct: 43 VQTLIADVTRPDTLASIVHLRP-EILVYCVAASEYSDEH-----YRLSYVEGLRNTLSAL 96
Query: 314 KSHGVYQLVFSSSCTVYGEPQFLPITEDHPT 344
+ + + F SS VYG+ + ED P
Sbjct: 97 EGAPLQHVFFVSSTGVYGQEVEEWLDEDTPP 127
Score = 43.5 bits (103), Expect = 1e-04
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 68 DCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFL 127
+ +++ A + Y + + N L ++ + + F SS VYG+
Sbjct: 65 EILVYCVAASEYSDEH-----YRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEE 119
Query: 128 PITEDHPT 135
+ ED P
Sbjct: 120 WLDEDTPP 127
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 49.0 bits (116), Expect = 2e-06
Identities = 31/204 (15%), Positives = 52/204 (25%), Gaps = 32/204 (15%)
Query: 13 GTSVL-QLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCT---HDID 68
G S+ L V ARR + Q ++ +
Sbjct: 14 GNSLAEILPLADTPGGPWKV--YGVARRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLT 71
Query: 69 CVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMK--SHGVYQLVFSSSCTVY----- 121
V H + + N N+L+ + + + + Y
Sbjct: 72 DVTHVFY--VTWANRSTEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFE 129
Query: 122 ----GEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAH 177
E P TED P N Y E+++ + + + R N G
Sbjct: 130 SYGKIESHDPPYTEDLPRLKYMNFYYDL----EDIMLEEVEKKEGLTWSVHRPGNIFGFS 185
Query: 178 PSGRIGEDPTKSFTNIMPYLAQVA 201
P S N++ L A
Sbjct: 186 P---------YSMMNLVGTLCVYA 200
Score = 44.3 bits (104), Expect = 6e-05
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 15/110 (13%)
Query: 253 KVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEV 312
+++ CD+ D + + + V H + + N N+L+
Sbjct: 49 PINYVQCDISDPDDSQAKLS--PLTDVTHVFY--VTWANRSTEQENCEANSKMFRNVLDA 104
Query: 313 MK--SHGVYQLVFSSSCTVY---------GEPQFLPITEDHPTGNIKNFY 351
+ + + + Y E P TED P NFY
Sbjct: 105 VIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFY 154
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad,
SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A
{Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A*
2gna_A*
Length = 344
Score = 48.8 bits (117), Expect = 3e-06
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 247 EQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIAT 306
+F ++ F+ D+ D RL +A +D IH AA+K V + PL K N++
Sbjct: 65 MEFNDPRMRFFIGDVRDLERL--NYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGA 122
Query: 307 INLLEVMKSHGVYQLVFSSS 326
N++ + + Q++ S+
Sbjct: 123 SNVINACLKNAISQVIALST 142
Score = 39.9 bits (94), Expect = 0.002
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 23/119 (19%)
Query: 62 RCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCT-- 119
+D IH AA+K V + PL K N++ N++ + + Q++ S T
Sbjct: 87 YALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALS--TDK 144
Query: 120 -VYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEML--KDLSKAHKEWNIISLRYFNPVG 175
PI N+YG TK +++ + K + +RY N VG
Sbjct: 145 AAN------PI----------NLYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVG 187
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 3e-06
Identities = 58/357 (16%), Positives = 96/357 (26%), Gaps = 168/357 (47%)
Query: 3 NKFYNLGTGQGTSVLQLLRTFERVTGK------PV--P---------YIVEARREG---- 41
K + QG ++L+ L K P+ P Y+V A+ G
Sbjct: 206 EKVF----TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 42 --------------DIV------------SMYANTDLAQKELGWS-ARCTHDI--DCVIH 72
+V S + + A L + RC ++ + +
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC-YEAYPNTSLP 320
Query: 73 FAAVK---AVGE----SM-------QEPLMYY--KNNL---------IATIN-------- 99
+ ++ E M QE + Y K N I+ +N
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Query: 100 ------------LLEVMKSHGVYQ---------LVFSSSCTVYGEPQFLPITEDHPTGNI 138
L + G+ Q L FS+ +FLP+ P
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN--------RFLPVAS--P---- 426
Query: 139 KNVYGKTKHF--------IEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDPTKSF 190
F + + KDL K + +N ++ PV G D
Sbjct: 427 ---------FHSHLLVPASDLINKDLVKNNVSFNAKDIQI--PV-YDTFD--GSDLRVLS 472
Query: 191 TNIMPYLAQVAIGSKP------------HFTVFGAD---------YETEDGTG-KVV 225
+I + I P H FG + +DGTG +V+
Sbjct: 473 GSISERIVD-CIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI 528
Score = 34.6 bits (79), Expect = 0.11
Identities = 52/305 (17%), Positives = 84/305 (27%), Gaps = 146/305 (47%)
Query: 44 VSM----YANTDLAQK-----------ELGWSARCTHDIDCV--------IHFAAVKAVG 80
M Y + AQ G+S +D V IHF K G
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSI-----LDIVINNPVNLTIHFGGEK--G 1681
Query: 81 ESMQE--PLMYYKNN-----------------------------LIATIN---------- 99
+ ++E M ++ L AT
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 100 -LLEVMKSHGVYQL--VF---SSSCTVYGE-------PQFLPITEDHPTGNIKNVY--GK 144
E +KS G+ F S GE + I E ++ V+ G
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHS-----LGEYAALASLADVMSI-ES----LVEVVFYRGM 1791
Query: 145 TKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDPTKSFTNIMPYLAQVAIGS 204
++ + + +I++ NP GR+ +Q A+
Sbjct: 1792 ---TMQVAVPRDELGRSNYGMIAI---NP------GRVAAS-----------FSQEAL-- 1826
Query: 205 KPHFTVFGADYETEDGTGKVVAIDNFVNS-----VHI-GDTPCSIRAIEQFTG------- 251
+ V TG +V I N+ N V GD +RA++ T
Sbjct: 1827 --QYVVERVGKR----TGWLVEIVNY-NVENQQYV-AAGD----LRALDTVTNVLNFIKL 1874
Query: 252 KKVDF 256
+K+D
Sbjct: 1875 QKIDI 1879
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain
dehydrogenase/reductase, rossmann fold, oxidoreductase;
HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Length = 321
Score = 48.3 bits (116), Expect = 4e-06
Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 252 KKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLE 311
V+ S D++D R+ ++ + D + H AA +V +S + N+ T+++L+
Sbjct: 51 PNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLD 110
Query: 312 VMKSHG----VYQLVFSSSCTVYG--EPQFLPITEDHP 343
++ + S YG P+ P++E++
Sbjct: 111 AVRDSNLDCRILT---IGSSEEYGMILPEESPVSEENQ 145
Score = 39.5 bits (93), Expect = 0.002
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 68 DCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHG----VYQLVFSSSCTVYG- 122
D + H AA +V +S + N+ T+++L+ ++ + S YG
Sbjct: 76 DYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILT---IGSSEEYGM 132
Query: 123 -EPQFLPITEDHP 134
P+ P++E++
Sbjct: 133 ILPEESPVSEENQ 145
Score = 31.4 bits (72), Expect = 0.78
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 533 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEAR--REGDIVSMYANTDLAQRELGWSARC 590
YN+ +G GT + +L + + + R ++ ++ + + GW R
Sbjct: 246 YNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRI 305
Query: 591 TVK 593
++
Sbjct: 306 PLE 308
Score = 31.4 bits (72), Expect = 0.84
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 6 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEAR--REGDIVSMYANTDLAQKELGWSARC 63
YN+ +G GT + +L + + + R ++ ++ + + GW R
Sbjct: 246 YNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRI 305
Query: 64 T 64
Sbjct: 306 P 306
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus
horikoshii}
Length = 336
Score = 47.5 bits (114), Expect = 7e-06
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 256 FYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKS 315
F D+ D + E+ K D V+H AA V S+ P ++ +N+I T LLE ++
Sbjct: 58 FVKGDVADYELVKELVRKVDG--VVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRR 115
Query: 316 HGV-YQLVFSSSCTVYG---EPQFLPITEDHP 343
+ V S+ VYG + F TE+
Sbjct: 116 ENPEVRFVHVSTDEVYGDILKGSF---TENDR 144
Score = 40.2 bits (95), Expect = 0.001
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 65 HDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGV-YQLVFSSSCTVYG- 122
+D V+H AA V S+ P ++ +N+I T LLE ++ + V S+ VYG
Sbjct: 74 RKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGD 133
Query: 123 --EPQFLPITEDHP 134
+ F TE+
Sbjct: 134 ILKGSF---TENDR 144
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 46.5 bits (110), Expect = 2e-05
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 20/123 (16%)
Query: 51 DLAQKELGWS----ARCTHDIDCVIHFAA-VKAVGESMQEPLMYYKNNLIATINLLEVMK 105
D ++ +LG R +D ++ AA V A + N+ T L+ +
Sbjct: 148 DKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFP-----YHELFGPNVAGTAELIRIAL 202
Query: 106 SHGVYQLVFSSSCTVYGEPQFLPITEDHPT----------GNIKNVYGKTKHFIEEMLKD 155
+ + + S+ V + TED G YG +K E +L++
Sbjct: 203 TTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLRE 262
Query: 156 LSK 158
+
Sbjct: 263 AND 265
Score = 41.4 bits (97), Expect = 8e-04
Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 253 KVDFYSCDLVDKNRLG---EIFAK--HDIDCVIHFAA-VKAVGESMQEPLMYYKNNLIAT 306
+++ + D + LG ++ + +D ++ AA V A + N+ T
Sbjct: 141 RLEVVAGDK-SEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFP-----YHELFGPNVAGT 194
Query: 307 INLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNFYNLGTGQGT 359
L+ + + + + S+ V + TED I + G
Sbjct: 195 AELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGWAG 247
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD;
1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A*
1ket_A* 1kep_A*
Length = 348
Score = 46.0 bits (110), Expect = 2e-05
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 16/113 (14%)
Query: 242 SIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKN 301
++ AI G +V+ D+ D + ++ AK D ++H+AA S+ +P +
Sbjct: 47 NLEAIL---GDRVELVVGDIADAELVDKLAAKADA--IVHYAAESHNDNSLNDPSPFIHT 101
Query: 302 NLIATINLLEVMKSHG----------VY-QLVFSSSCTVYGEPQFLPITEDHP 343
N I T LLE + + VY L +GE T +
Sbjct: 102 NFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETN 154
Score = 38.7 bits (91), Expect = 0.004
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 11/81 (13%)
Query: 65 HDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHG----------VY-QLV 113
D ++H+AA S+ +P + N I T LLE + + VY L
Sbjct: 74 AKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLP 133
Query: 114 FSSSCTVYGEPQFLPITEDHP 134
+GE T +
Sbjct: 134 LREDLPGHGEGPGEKFTAETN 154
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 44.7 bits (106), Expect = 3e-05
Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 12/129 (9%)
Query: 61 ARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVF-SSSCT 119
D VI + + + + +++ +K GV + + + +
Sbjct: 62 CEVCKGADAVISAFNPGWNNPDIYDE------TIKVYLTIIDGVKKAGVNRFLMVGGAGS 115
Query: 120 VYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHK-EWNIIS-LRYFNPVGAH 177
++ P + +N+ K E L L K + +W S P
Sbjct: 116 LFIAPGLRLMDSGEVP---ENILPGVKALGEFYLNFLMKEKEIDWVFFSPAADMRPGVRT 172
Query: 178 PSGRIGEDP 186
R+G+D
Sbjct: 173 GRYRLGKDD 181
Score = 41.2 bits (97), Expect = 4e-04
Identities = 11/97 (11%), Positives = 31/97 (31%), Gaps = 9/97 (9%)
Query: 253 KVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEV 312
+ D+ + + E+ D VI + + + + +++
Sbjct: 47 HLKVKKADVSSLDEVCEVCKGADA--VISAFNPGWNNPDIYDE------TIKVYLTIIDG 98
Query: 313 MKSHGVYQLVF-SSSCTVYGEPQFLPITEDHPTGNIK 348
+K GV + + + +++ P + NI
Sbjct: 99 VKKAGVNRFLMVGGAGSLFIAPGLRLMDSGEVPENIL 135
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 44.2 bits (105), Expect = 4e-05
Identities = 29/179 (16%), Positives = 61/179 (34%), Gaps = 24/179 (13%)
Query: 61 ARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTV 120
A+ H +D +I+ + G+S K +L + L++ + V + + S+
Sbjct: 58 AKQLHGMDAIIN--VSGSGGKS------LLKVDLYGAVKLMQAAEKAEVKRFILLSTIFS 109
Query: 121 YGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLK---DLSKAHKEWNIISLRYFNPVGAH 177
+++ D Y KHF + L +L ++ II
Sbjct: 110 LQPEKWIGAGFDALKD-----YYIAKHFADLYLTKETNL-----DYTIIQPGAL--TEEE 157
Query: 178 PSGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGTGKVV-AIDNFVNSVH 235
+G I + S +N + +A G +G + A+++ + H
Sbjct: 158 ATGLIDINDEVSASNTIGDVADTIKELVMTDHSIGKVISMHNGKTAIKEALESLLEHHH 216
Score = 35.4 bits (82), Expect = 0.033
Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 272 AKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYG 331
H +D +I+ + G+S K +L + L++ + V + + S+
Sbjct: 60 QLHGMDAIIN--VSGSGGKS------LLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQ 111
Query: 332 EPQFLPITED 341
+++ D
Sbjct: 112 PEKWIGAGFD 121
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 43.5 bits (103), Expect = 2e-04
Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 68 DCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFL 127
D V+ A+ E + PL ++ + + ++ + +++F S+ VYG
Sbjct: 384 DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK-RIIFPSTSEVYGMCSDK 442
Query: 128 PITEDH------PTGNIKNVYGKTKHFIEEML 153
EDH P + +Y +K ++ ++
Sbjct: 443 YFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVI 474
Score = 39.6 bits (93), Expect = 0.003
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 277 DCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFL 336
D V+ A+ E + PL ++ + + ++ + +++F S+ VYG
Sbjct: 384 DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK-RIIFPSTSEVYGMCSDK 442
Query: 337 PITEDH 342
EDH
Sbjct: 443 YFDEDH 448
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 42.2 bits (100), Expect = 3e-04
Identities = 34/142 (23%), Positives = 52/142 (36%), Gaps = 19/142 (13%)
Query: 9 GTGQ-GTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDI 67
+GQ G + +LL V ++ + D+ TD + E
Sbjct: 8 ASGQLGIELSRLLSERHEVIKVYNSSEIQGGYKLDL------TDFPRLE---DFIIKKRP 58
Query: 68 DCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVY---GEP 124
D +I+ AA+ V + E YK N A +++ K Y +V S T Y GE
Sbjct: 59 DVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSY-IVHIS--TDYVFDGEK 115
Query: 125 QFLPITEDHPTGNIKNVYGKTK 146
E+ N N YG +K
Sbjct: 116 G--NYKEEDIP-NPINYYGLSK 134
Score = 40.6 bits (96), Expect = 8e-04
Identities = 19/68 (27%), Positives = 28/68 (41%)
Query: 252 KKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLE 311
+ Y DL D RL + K D +I+ AA+ V + E YK N A +++
Sbjct: 34 EIQGGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVR 93
Query: 312 VMKSHGVY 319
K Y
Sbjct: 94 AGKVIDSY 101
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 41.7 bits (99), Expect = 4e-04
Identities = 43/161 (26%), Positives = 62/161 (38%), Gaps = 34/161 (21%)
Query: 9 GTGQ-GTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDI 67
GQ G + + L+ GK V I ++ DI T++
Sbjct: 20 ANGQLGREIQKQLK------GKNVEVIPTDVQDLDI------TNVLAVN---KFFNEKKP 64
Query: 68 DCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGV--------YQLVFSSSCT 119
+ VI+ AA AV + ++ + YK N I NL S G Y VF
Sbjct: 65 NVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDY--VFD---- 118
Query: 120 VYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAH 160
GE + PITE N ++ YGKTK E +K L+ +
Sbjct: 119 --GEAK-EPITEFDEV-NPQSAYGKTKLEGENFVKALNPKY 155
Score = 37.9 bits (89), Expect = 0.006
Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 254 VDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVM 313
D D+ + + + F + + VI+ AA AV + ++ + YK N I NL
Sbjct: 42 TDVQDLDITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAA 101
Query: 314 KSHGV--------YQLVFSSSCTVYGEPQFLPITEDHPTG 345
S G Y VF GE + PITE
Sbjct: 102 YSVGAEIVQISTDY--VFD------GEAK-EPITEFDEVN 132
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus
anthracis}
Length = 287
Score = 40.6 bits (96), Expect = 8e-04
Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 34/161 (21%)
Query: 9 GTGQ-GTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDI 67
GQ G + + L + ++ DI T+++Q +
Sbjct: 13 ANGQLGKQLQEELN------PEEYDIYPFDKKLLDI------TNISQVQ---QVVQEIRP 57
Query: 68 DCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGV--------YQLVFSSSCT 119
+IH AA V ++ +E + Y N I N+ + G Y VF
Sbjct: 58 HIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDY--VFQ---- 111
Query: 120 VYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAH 160
G+ E H N+YG +K+ E+ +K+L +
Sbjct: 112 --GDRP-EGYDEFHNP-APINIYGASKYAGEQFVKELHNKY 148
Score = 37.1 bits (87), Expect = 0.010
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 17/100 (17%)
Query: 254 VDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVM 313
D D+ + +++ ++ + +IH AA V ++ +E + Y N I N+
Sbjct: 35 FDKKLLDITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVAS 94
Query: 314 KSHGV--------YQLVFSSSCTVYGEPQFLPITEDHPTG 345
+ G Y VF G+ E H
Sbjct: 95 QLVGAKLVYISTDY--VFQ------GDRP-EGYDEFHNPA 125
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 39.6 bits (93), Expect = 0.001
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 13/95 (13%)
Query: 61 ARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTV 120
+ ID V+ A + + +L I ++ + G+ + + SS
Sbjct: 79 SHAFASIDAVVF--AAGSGPHT--GADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGT 134
Query: 121 YGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKD 155
+P P+ H Y K ++ LK
Sbjct: 135 -VDPDQGPMNMRH--------YLVAKRLADDELKR 160
Score = 33.5 bits (77), Expect = 0.14
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 272 AKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYG 331
A ID V+ A + + +L I ++ + G+ + + SS
Sbjct: 81 AFASIDAVVF--AAGSGPHT--GADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVD 136
Query: 332 EPQ 334
Q
Sbjct: 137 PDQ 139
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 39.9 bits (94), Expect = 0.001
Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 26/146 (17%)
Query: 9 GTGQ-GTSVLQLLRTFER-VTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHD 66
TG G +V + + G + ++ D
Sbjct: 10 ATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNL------LDSNAVH---HIIHDFQ 60
Query: 67 IDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQL------VFSSSCTV 120
++H AA + +P + N+ A+ NL + + G + + VF +
Sbjct: 61 PHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFDGTNPP 120
Query: 121 YGEPQFLPITEDHPTGNIKNVYGKTK 146
Y E+ N+YGKTK
Sbjct: 121 Y--------REEDIP-APLNLYGKTK 137
Score = 38.8 bits (91), Expect = 0.004
Identities = 15/70 (21%), Positives = 28/70 (40%)
Query: 249 FTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATIN 308
F + F +L+D N + I ++H AA + +P + N+ A+ N
Sbjct: 34 FRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGN 93
Query: 309 LLEVMKSHGV 318
L + + G
Sbjct: 94 LAKEAAAVGA 103
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP;
1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A*
1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Length = 321
Score = 38.7 bits (91), Expect = 0.004
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 260 DLVDKNRLGEIFAKHDIDCVIHFAA-VKAVGESMQEPLMYYKNNLIATINLLEVMKSHGV 318
+L+D + + FA ID V AA V + + P + N++ N++ + V
Sbjct: 40 NLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDV 99
Query: 319 YQLVF-SSSCTVYGEPQF--LPITED 341
+L+F SSC +Y P+ P+ E
Sbjct: 100 NKLLFLGSSC-IY--PKLAKQPMAES 122
Score = 29.5 bits (67), Expect = 3.1
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 67 IDCVIHFAA-VKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVF-SSSCTVYGEP 124
ID V AA V + + P + N++ N++ + V +L+F SSC +Y P
Sbjct: 56 IDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSC-IY--P 112
Query: 125 QF--LPITED 132
+ P+ E
Sbjct: 113 KLAKQPMAES 122
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold,
sugar-nucleotide-binding domain; HET: NAD; 2.00A
{Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A*
1kc3_A* 1kbz_A*
Length = 299
Score = 38.3 bits (90), Expect = 0.004
Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 18/113 (15%)
Query: 42 DIVSMYANTDLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLL 101
D+ S D + + D +++ AA AV ++ EP + N + +
Sbjct: 30 DVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIA 89
Query: 102 EVMKSHGV--------YQLVFSSSCTVYGEPQFLPITEDHPTGNIKNVYGKTK 146
+ G Y VF G +P E T + NVYGKTK
Sbjct: 90 KAANETGAWVVHYSTDY--VFP------GTGD-IPWQETDATSPL-NVYGKTK 132
Score = 36.8 bits (86), Expect = 0.014
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 17/105 (16%)
Query: 249 FTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATIN 308
+ D + + E K D +++ AA AV ++ EP + N +
Sbjct: 28 ALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEA 87
Query: 309 LLEVMKSHGV--------YQLVFSSSCTVYGEPQFLPITEDHPTG 345
+ + G Y VF G +P E T
Sbjct: 88 IAKAANETGAWVVHYSTDY--VFP------GTGD-IPWQETDATS 123
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 36.5 bits (84), Expect = 0.014
Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 8/126 (6%)
Query: 61 ARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTV 120
+D V+ A+ S + L +L +L+ ++++ + S ++
Sbjct: 57 EADLDSVDAVVD--ALSVPWGSGRGYL-----HLDFATHLVSLLRNSDTLAVFILGSASL 109
Query: 121 YGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHK-EWNIISLRYFNPVGAHPS 179
P+ D P + + + L W IS P G S
Sbjct: 110 AMPGADHPMILDFPESAASQPWYDGALYQYYEYQFLQMNANVNWIGISPSEAFPSGPATS 169
Query: 180 GRIGED 185
G+D
Sbjct: 170 YVAGKD 175
Score = 29.6 bits (66), Expect = 2.3
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 272 AKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYG 331
+D V+ A+ S + L +L +L+ ++++ + S ++
Sbjct: 59 DLDSVDAVVD--ALSVPWGSGRGYL-----HLDFATHLVSLLRNSDTLAVFILGSASLAM 111
Query: 332 EPQFLPITEDHP 343
P+ D P
Sbjct: 112 PGADHPMILDFP 123
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 35.7 bits (83), Expect = 0.022
Identities = 13/94 (13%), Positives = 32/94 (34%), Gaps = 15/94 (15%)
Query: 96 ATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLK- 154
N++ MK+HGV ++V +S + +P +P + ++L+
Sbjct: 90 GARNIVAAMKAHGVDKVVACTSAFLLWDPTKVP--------PRLQAVTDDHIRMHKVLRE 141
Query: 155 -DLSKAHKEWNIISLRYFNPVGAHPSGRIGEDPT 187
L ++ + + + + D
Sbjct: 142 SGL-----KYVAVMPPHIGDQPLTGAYTVTLDGR 170
Score = 34.2 bits (79), Expect = 0.068
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 260 DLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVY 319
D++ + + A D VI + + +M N++ MK+HGV
Sbjct: 54 DVLQAADVDKTVA--GQDAVIV--LLGTRNDLSPTTVMS-----EGARNIVAAMKAHGVD 104
Query: 320 QLVFSSSCTVYGEP-----QFLPITEDH 342
++V +S + +P + +T+DH
Sbjct: 105 KVVACTSAFLLWDPTKVPPRLQAVTDDH 132
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 35.4 bits (82), Expect = 0.037
Identities = 37/290 (12%), Positives = 75/290 (25%), Gaps = 75/290 (25%)
Query: 204 SKPHFTVFGADYETEDGTGKV--VAIDNFVNSVHIGDTPCSIRAI---------EQFTGK 252
K VFG TG + D +R + ++ +
Sbjct: 4 DKKLVVVFGG-------TGAQGGSVARTLLE-----DGTFKVRVVTRNPRKKAAKELRLQ 51
Query: 253 KVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEV 312
+ D D+ + V ES + L ++
Sbjct: 52 GAEVVQGDQDDQVIMELALN--GAYATF---IVTNYWESCSQEQEVK-----QGKLLADL 101
Query: 313 MKSHGVYQLVFSSSCTV-------YGEPQFLP--ITEDHPTGNIKNFYNLGTGQGTSVLQ 363
+ G++ +V+S + F E++ ++ G + ++
Sbjct: 102 ARRLGLHYVVYSGLENIKKLTAGRLAAAHFDGKGEVEEY----FRD-----IGVPMTSVR 152
Query: 364 LLRTFERVTGNKPVPYIFYNLGTGQGTSVLQ--LLRTFERVTGNKPVPYIFYNLGTGQGT 421
Y F NL + TG+ P+ + + G
Sbjct: 153 ------------LPCY-FENLLSHFLPQKAPDGKSYLLSLPTGDVPMDGM---SVSDLGP 196
Query: 422 SVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYI 471
VL LL+ E+ G+ + + + + + T K V
Sbjct: 197 VVLSLLKMPEKYVGQNIG------LSTCRHTAEEYAALLTKHTRKVVHDA 240
Score = 33.5 bits (77), Expect = 0.18
Identities = 24/178 (13%), Positives = 53/178 (29%), Gaps = 44/178 (24%)
Query: 98 INLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLS 157
L ++ + G++ +V+S L + G + + K +EE +D+
Sbjct: 96 KLLADLARRLGLHYVVYSG----------LENIKKLTAGRLAAAHFDGKGEVEEYFRDIG 145
Query: 158 KAHKEWNIISLRYF--NPVGAHPSGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADY 215
+ L + N + + + + YL + G P + +D
Sbjct: 146 VP---MTSVRLPCYFENLLSHFLPQKAPDGKS--------YLLSLPTGDVPMDGMSVSD- 193
Query: 216 ETEDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAK 273
G VV + P E++ G+ + + + K
Sbjct: 194 -----LGPVVL--------SLLKMP------EKYVGQNIGLST-CRHTAEEYAALLTK 231
Score = 32.7 bits (75), Expect = 0.26
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 450 GTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYI 501
G VL LL+ E+ G+ + + + + + T K V
Sbjct: 195 GPVVLSLLKMPEKYVGQNIG------LSTCRHTAEEYAALLTKHTRKVVHDA 240
Score = 32.7 bits (75), Expect = 0.26
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 480 GTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYI 531
G VL LL+ E+ G+ + + + + + T K V
Sbjct: 195 GPVVLSLLKMPEKYVGQNIG------LSTCRHTAEEYAALLTKHTRKVVHDA 240
Score = 32.7 bits (75), Expect = 0.26
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 510 GTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYI 561
G VL LL+ E+ G+ + + + + + T K V
Sbjct: 195 GPVVLSLLKMPEKYVGQNIG------LSTCRHTAEEYAALLTKHTRKVVHDA 240
Score = 29.7 bits (67), Expect = 2.7
Identities = 4/32 (12%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 3 NKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI 34
+ L + + + + T K V
Sbjct: 210 GQNIGL-STCRHTAEEYAALLTKHTRKVVHDA 240
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 34.8 bits (80), Expect = 0.063
Identities = 19/134 (14%), Positives = 39/134 (29%), Gaps = 26/134 (19%)
Query: 210 VFGADYETEDGTGKV--VAIDNFVNSVHIGDTPCSIRAIEQ--FTGKKVDFYSCDLVDKN 265
V GA +G+ + +R+ + G + D + D+ D +
Sbjct: 9 VTGA-------SGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDAD 61
Query: 266 RLGEIFAKHDIDCVIH-------------FAAVKAVGESMQEPLMYYKNNLIATINLLEV 312
+ F ID ++ ++ + + I N ++
Sbjct: 62 SINPAFQ--GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDA 119
Query: 313 MKSHGVYQLVFSSS 326
K GV +V S
Sbjct: 120 AKVAGVKHIVVVGS 133
Score = 32.5 bits (74), Expect = 0.32
Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 7/82 (8%)
Query: 74 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 133
++ + + I N ++ K GV +V S L +
Sbjct: 90 TKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNG 149
Query: 134 PTGNIKNVYGKTKHFIEEMLKD 155
K E+ L D
Sbjct: 150 N-------ILVWKRKAEQYLAD 164
>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate
trapping, active site mutant, hydrolase; 1.52A {Homo
sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A
1cwt_A 2ifd_A
Length = 175
Score = 31.5 bits (71), Expect = 0.49
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 340 EDHPTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFY-NLGTGQGTSVLQLLRT 398
++ G+IK NL + L + +K V IF+ + +G + + +R
Sbjct: 55 YEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHSEFSSERGPRMCRFIRE 114
Query: 399 FERVTGNKP 407
+R + P
Sbjct: 115 RDRAVNDYP 123
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 31.7 bits (72), Expect = 0.73
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 251 GKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAV 285
G +V +CD+ +++ L + + + V H A +
Sbjct: 311 GCEVVHAACDVAERDALAALVTAYPPNAVFHTAGI 345
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer,
hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A*
1r4k_A 1si2_A 1si3_A
Length = 861
Score = 30.9 bits (69), Expect = 1.4
Identities = 35/210 (16%), Positives = 63/210 (30%), Gaps = 19/210 (9%)
Query: 243 IRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNN 302
R ++ E+ D + V+ +++Q +N
Sbjct: 507 FRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQM--KNVQRTTPQTLSN 564
Query: 303 LIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITED--HPTGNIKNFYNLGTGQGTS 360
L IN +K GV ++ + + + D HP ++ G+
Sbjct: 565 LCLKIN----VKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSM 620
Query: 361 VLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQG 420
R V + I +L V +LL F + T KP IFY G +G
Sbjct: 621 DAHPNRYCATVRVQQHRQEIIQDLAA----MVRELLIQFYKSTRFKPTRIIFYRDGVSEG 676
Query: 421 -------TSVLQLLRTFERVTGKPVPYIFY 443
+L + ++ P I +
Sbjct: 677 QFQQVLHHELLAIREACIKLEKDYQPGITF 706
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 30.6 bits (69), Expect = 1.4
Identities = 17/135 (12%), Positives = 41/135 (30%), Gaps = 31/135 (22%)
Query: 66 DIDCVIHFAAVKAVGESMQEP--LMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGE 123
D +G + + + + + + E+ K+ G
Sbjct: 84 GHDVGFC-----CLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGC-------------- 124
Query: 124 PQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNP---VGAHPSG 180
F ++ + +Y + K +E +++L +++ F P +
Sbjct: 125 KHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKF--DRYSV-----FRPGVLLCDRQES 177
Query: 181 RIGEDPTKSFTNIMP 195
R GE + F +P
Sbjct: 178 RPGEWLVRKFFGSLP 192
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen
fixation, nitrogen metabolism, molybdoenzymes, electron
transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 30.9 bits (70), Expect = 1.5
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 505 LGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTG-QGTSVLQLLRTFERVTGKPVPYIVE 563
L Q +++ + + P + G T +LL T +++GKP+ +
Sbjct: 289 LQPWQLLKSKKVV---QEMWN--QPATEVAIPLGLAATD--ELLMTVSQLSGKPIADALT 341
Query: 564 ARRE 567
R
Sbjct: 342 LERG 345
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 30.3 bits (69), Expect = 1.5
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 3 NKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI---VEARREG-----DIVSMYANTDLAQ 54
K Y L +G + +L +G + Y +E E ++ A+ A
Sbjct: 192 GKRYLL-SGYSYDMKELAAILSEASGTEIKYEPVSLETFAEMYDEPKGFGALLASMYHAG 250
Query: 55 KELGWSARCTHDI 67
G + ++D
Sbjct: 251 AR-GLLDQESNDF 262
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A
{Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A*
3tel_A* 4de8_A*
Length = 398
Score = 30.6 bits (69), Expect = 1.7
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 231 VNSVHIGDTPCSIRAIEQFTGKKVDFY 257
+ I SI +E G +++Y
Sbjct: 188 LTHAGIYGVDSSIHTLENLYGVDINYY 214
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd reductase,
NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2
PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A*
2vuu_A*
Length = 352
Score = 30.2 bits (68), Expect = 2.0
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 3 NKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI 34
L T + S +Q+ F R + V Y+
Sbjct: 213 GHRIAL-TFETLSPVQVCAAFSRALNRRVTYV 243
Score = 29.0 bits (65), Expect = 4.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 417 TGQGTSVLQLLRTFERVTGKPVPYI 441
T + S +Q+ F R + V Y+
Sbjct: 219 TFETLSPVQVCAAFSRALNRRVTYV 243
Score = 29.0 bits (65), Expect = 4.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 447 TGQGTSVLQLLRTFERVTGKPVPYI 471
T + S +Q+ F R + V Y+
Sbjct: 219 TFETLSPVQVCAAFSRALNRRVTYV 243
Score = 29.0 bits (65), Expect = 4.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 477 TGQGTSVLQLLRTFERVTGKPVPYI 501
T + S +Q+ F R + V Y+
Sbjct: 219 TFETLSPVQVCAAFSRALNRRVTYV 243
Score = 29.0 bits (65), Expect = 4.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 507 TGQGTSVLQLLRTFERVTGKPVPYI 531
T + S +Q+ F R + V Y+
Sbjct: 219 TFETLSPVQVCAAFSRALNRRVTYV 243
Score = 29.0 bits (65), Expect = 4.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 537 TGQGTSVLQLLRTFERVTGKPVPYI 561
T + S +Q+ F R + V Y+
Sbjct: 219 TFETLSPVQVCAAFSRALNRRVTYV 243
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 458
Score = 30.1 bits (68), Expect = 2.1
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 510 GTSVLQLLRTFERVTGKPVPYIFYNLGTG-QGTSVLQLLRTFERVTGKPVPYIVEARRE 567
G S+ TG VP + + G L ++G PVP + +R
Sbjct: 244 GQSLAGAADALAERTG--VPDRRFGMLYGLDAVD--AWLMALAEISGNPVPDRYKRQRA 298
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B*
1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B*
3k1a_B* 3min_B*
Length = 523
Score = 30.1 bits (68), Expect = 2.2
Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 8/64 (12%)
Query: 505 LGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTG-QGTSVLQLLRTFERVTGKPVPYIVE 563
L + + E N+ G T + L ++G+P+P +
Sbjct: 293 LQPWHLEKTKKFV---EGTWK--HEVPKLNIPMGLDWTD--EFLMKVSEISGQPIPASLT 345
Query: 564 ARRE 567
R
Sbjct: 346 KERG 349
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 2.6
Identities = 28/161 (17%), Positives = 63/161 (39%), Gaps = 33/161 (20%)
Query: 31 VPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHFAAVKAVGESM----QEP 86
VP+ ++++ + + + LGW D+D +I FAA+ G + +
Sbjct: 536 VPFNQGSKQDVEALIEFIYDTEKNGGLGW------DLDAIIPFAAIPEQGIELEHIDSKS 589
Query: 87 LMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKN--VYGK 144
++ L + ++ +K + + + V LP++ +H G +Y +
Sbjct: 590 EFAHRIMLTNILRMMGCVKKQKSARGIETRPAQV-----ILPMSPNH--GTFGGDGMYSE 642
Query: 145 TKHFIEEMLKDLSKAHKE-W-NIISLRYFNPVGAHPSGRIG 183
+K +E + ++ H E W N +++ IG
Sbjct: 643 SKLSLETL---FNRWHSESWANQLTV-------CGA--IIG 671
>3op3_A M-phase inducer phosphatase 3; structural genomics, structural
genomics consortium, SGC, Al alpha sandwich, kinase,
cytosol, hydrolase; 2.63A {Homo sapiens}
Length = 216
Score = 29.3 bits (65), Expect = 2.7
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 340 EDHPTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFY-NLGTGQGTSVLQLLRT 398
++ G+I+ NL + + L + + K + +F+ + +G + + LR
Sbjct: 88 YEYLGGHIQGALNLYSQEELFNFFLKKPIVPLDTQKRIIIVFHCEFSSERGPRMCRCLRE 147
Query: 399 FERVTGNKP 407
+R P
Sbjct: 148 EDRSLNQYP 156
>1fiu_A Type II restriction enzyme ngomi; protein-DNA complex, double
helix, restriction endonuclease, restriction-modifiction
systems, hydrolase; HET: DNA; 1.60A {Neisseria
gonorrhoeae} SCOP: c.52.1.10 PDB: 4abt_A
Length = 286
Score = 29.7 bits (66), Expect = 2.7
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 61 ARCTHDIDCVIHFA------AVKAVGESMQEPLM 88
A T +IDCV HFA ++++ L
Sbjct: 232 ALGTGEIDCVYHFALYELEQILQSLNYEDALDLF 265
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell
cycle phosphatase, dual specificity protein phosphatase;
1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A
2uzq_A
Length = 211
Score = 28.9 bits (64), Expect = 3.4
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 340 EDHPTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFY-NLGTGQGTSVLQLLRT 398
++ G+IK NL + L + +K V IF+ + +G + + +R
Sbjct: 75 YEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRE 134
Query: 399 FERVTGNKP 407
+R + P
Sbjct: 135 RDRAVNDYP 143
>3f5o_A Thioesterase superfamily member 2; hotdog fold, hydrolase; HET: UOC
COA P6G; 1.70A {Homo sapiens} PDB: 2f0x_A* 2cy9_A
Length = 148
Score = 28.2 bits (63), Expect = 4.8
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 225 VAID---NFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAK 273
V++D +++ +G+ I A GK + F S DL +K G++ A+
Sbjct: 82 VSVDMNITYMSPAKLGED-IVITAHVLKQGKTLAFTSVDLTNKAT-GKLIAQ 131
>1t6l_A DNA polymerase processivity factor; processivity fold, replication;
HET: DNA; 1.85A {Human herpesvirus 5} SCOP: d.131.1.2
d.131.1.2 PDB: 1yyp_A*
Length = 290
Score = 28.6 bits (63), Expect = 5.9
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 280 IHFAAVKAVGESMQEPLMYYKNNLIATIN-----LLEVMKSHGVYQLVFSSSCTVYGEPQ 334
+ K + ++ + K N T +L+ ++SH V ++ F+SSC +
Sbjct: 15 LRLKPYKTAIQQLRSVIRALKENTTVTFLPTPSLILQTVRSHCVSKITFNSSCLYITDKS 74
Query: 335 FLPITEDHPTGNIKNFYNL 353
F P T ++ T + NF L
Sbjct: 75 FQPKTINNSTPLLGNFMYL 93
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 28.3 bits (63), Expect = 7.8
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 105 KSHGVYQLVFSSSCTVYGEPQFLPITEDHPT 135
++ + + S+ VYG+ + E P
Sbjct: 91 RAAQFRWVGYLSTTAVYGDHDGAWVDETTPL 121
Score = 28.3 bits (63), Expect = 7.8
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 314 KSHGVYQLVFSSSCTVYGEPQFLPITEDHPT 344
++ + + S+ VYG+ + E P
Sbjct: 91 RAAQFRWVGYLSTTAVYGDHDGAWVDETTPL 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.414
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,525,499
Number of extensions: 610148
Number of successful extensions: 2323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2131
Number of HSP's successfully gapped: 321
Length of query: 600
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 501
Effective length of database: 3,937,614
Effective search space: 1972744614
Effective search space used: 1972744614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.4 bits)