RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16545
(600 letters)
>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Escherichia coli [TaxId:
562]}
Length = 338
Score = 136 bits (342), Expect = 3e-36
Identities = 87/171 (50%), Positives = 114/171 (66%)
Query: 51 DLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVY 110
D+ + L H ID VIHFA +KAVGES+Q+PL YY NN+ T+ L+ M++ V
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 111 QLVFSSSCTVYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRY 170
+FSSS TVYG+ +P E PTG ++ YGK+K +E++L DL KA +W+I LRY
Sbjct: 118 NFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 171 FNPVGAHPSGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGT 221
FNPVGAHPSG +GEDP N+MPY+AQVA+G + +FG DY TEDGT
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGT 228
Score = 111 bits (278), Expect = 1e-27
Identities = 97/371 (26%), Positives = 139/371 (37%), Gaps = 77/371 (20%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
V+ +DN NS + IE+ GK F D+ ++ + EI H ID VIHF
Sbjct: 26 DVIILDNLCNS-----KRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
A +KAVGES+Q+PL YY NN+ T+ L+ M++ V +FSSS TVYG+ +P E
Sbjct: 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESF 140
Query: 343 PTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERV 402
PTG ++ Y V I +L Q + LLR F
Sbjct: 141 PTGTPQSPYGK-------------------SKLMVEQILTDLQKAQPDWSIALLRYF--- 178
Query: 403 TGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 462
N + ++G + + +PYI G+ S+ +
Sbjct: 179 --NPVGAHPSGDMGEDP-----------QGIPNNLMPYIAQVA-VGRRDSLAIFGNDYPT 224
Query: 463 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 522
G V + + YNLG G G SVL ++ F +
Sbjct: 225 EDGTGVRDYIH------VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSK 278
Query: 523 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQR 582
GKPV Y F RREGD+ + +A+ A R
Sbjct: 279 ACGKPVNYHF------------------------------APRREGDLPAYWADASKADR 308
Query: 583 ELGWSARCTVK 593
EL W T+
Sbjct: 309 ELNWRVTRTLD 319
Score = 55.4 bits (132), Expect = 8e-09
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 1 MINKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWS 60
YNLG G G SVL ++ F + GKPV Y RREGD+ + +A+ A +EL W
Sbjct: 254 PGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWR 313
Query: 61 AR 62
Sbjct: 314 VT 315
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli
[TaxId: 562]}
Length = 357
Score = 121 bits (304), Expect = 9e-31
Identities = 35/174 (20%), Positives = 61/174 (35%), Gaps = 12/174 (6%)
Query: 51 DLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVY 110
DL+ D V + A+ V S + P + + T+ LLE ++ G+
Sbjct: 63 DLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLE 122
Query: 111 Q---LVFSSSCTVYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIIS 167
+ +S+ +YG Q +P E P ++ Y K + + + +++ +
Sbjct: 123 KKTRFYQASTSELYGLVQEIPQKETTPF-YPRSPYAVAKLYAYWITVNYRESYG-MYACN 180
Query: 168 LRYFNPVGAHPSGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGT 221
FN H S R GE I +A +A G G D
Sbjct: 181 GILFN----HESPRRGETF--VTRKITRAIANIAQG-LESCLYLGNMDSLRDWG 227
Score = 120 bits (302), Expect = 1e-30
Identities = 43/262 (16%), Positives = 85/262 (32%), Gaps = 19/262 (7%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
+V I +S + I K + DL D + L I + D V +
Sbjct: 27 EVHGIKRRASSFNTERVD-HIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDEVYNL 85
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQ---LVFSSSCTVYGEPQFLPIT 339
A+ V S + P + + T+ LLE ++ G+ + +S+ +YG Q +P
Sbjct: 86 GAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQK 145
Query: 340 EDHPTGNIKNFYNLGTGQGTSVL---QLLRTFERVTGNKPVPYIFYNL-GTGQGTSVL-- 393
E P ++ Y + L + + G I +N +G + +
Sbjct: 146 ETTPF-YPRSPY------AVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTR 198
Query: 394 QLLRTFERVTGNKPVPYIFYNL-GTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTS 452
++ R + N+ ++ + + P + + TG S
Sbjct: 199 KITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPED-FVIATGVQYS 257
Query: 453 VLQLLRTFERVTGKPVPYIFYN 474
V Q + G + +
Sbjct: 258 VRQFVEMAAAQLGIKLRFEGTG 279
Score = 47.9 bits (113), Expect = 2e-06
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 1/92 (1%)
Query: 503 YNLGTGQGTSVLQLLRTFERVTGKPVPYIF-YNLGTGQGTSVLQLLRTFERVTGKPVPYI 561
+ + TG SV Q + G + + G SV + +
Sbjct: 248 FVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVD 307
Query: 562 VEARREGDIVSMYANTDLAQRELGWSARCTVK 593
R ++ ++ + A +LGW T++
Sbjct: 308 PRYFRPAEVETLLGDPTKAHEKLGWKPEITLR 339
Score = 36.3 bits (83), Expect = 0.010
Identities = 11/88 (12%), Positives = 23/88 (26%), Gaps = 31/88 (35%)
Query: 6 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVE----------------------------- 36
+ + TG SV Q + G + +
Sbjct: 248 FVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVD 307
Query: 37 --ARREGDIVSMYANTDLAQKELGWSAR 62
R ++ ++ + A ++LGW
Sbjct: 308 PRYFRPAEVETLLGDPTKAHEKLGWKPE 335
>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 312
Score = 119 bits (300), Expect = 1e-30
Identities = 43/207 (20%), Positives = 78/207 (37%), Gaps = 19/207 (9%)
Query: 66 DIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQ 125
++D + H A+ + M P+ K N I T+N+L + K G +L+ +S+ VYG+P+
Sbjct: 65 EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPE 123
Query: 126 FLPITEDHPTG----NIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGR 181
P +ED+ + Y + K E M K + R FN G
Sbjct: 124 VHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEG-VEVRVARIFNTFGPRMHMN 182
Query: 182 IGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGTGKVVAIDNFVNSVHIGDTPC 241
G ++ A+ +P TV+G+ +T + + VN +
Sbjct: 183 DG--------RVVSNFILQALQGEP-LTVYGSGSQTRA----FQYVSDLVNGLVALMNSN 229
Query: 242 SIRAIEQFTGKKVDFYSCDLVDKNRLG 268
+ ++ + KN +G
Sbjct: 230 VSSPVNLGNPEEHTILEFAQLIKNLVG 256
Score = 105 bits (262), Expect = 2e-25
Identities = 47/256 (18%), Positives = 94/256 (36%), Gaps = 25/256 (9%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTG-KKVDFYSCDLVDKNRLGEIFAKHDIDCVIH 281
+V +DNF R +E + G + + + D+V+ ++D + H
Sbjct: 27 EVTVVDNFFTG--------RKRNVEHWIGHENFELINHDVVEP-------LYIEVDQIYH 71
Query: 282 FAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITED 341
A+ + M P+ K N I T+N+L + K G +L+ +S+ VYG+P+ P +ED
Sbjct: 72 LASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSED 130
Query: 342 HPTGNIKNFYNLGTGQGTSVL---QLLRTFERVTGNKPVPYIFYNL-GTGQGTSVLQLLR 397
+ N + + + G + +N G + +++
Sbjct: 131 YWGHV--NPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVS 188
Query: 398 TF-ERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQL 456
F + +P+ T V L+ + V NLG + ++L+
Sbjct: 189 NFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP-VNLGNPEEHTILEF 247
Query: 457 LRTFERVTGKPVPYIF 472
+ + + G F
Sbjct: 248 AQLIKNLVGSGSEIQF 263
Score = 47.0 bits (111), Expect = 3e-06
Identities = 13/94 (13%), Positives = 33/94 (35%), Gaps = 14/94 (14%)
Query: 1 MINKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWS 60
++ NLG + ++L+ + + + G + + D + A+ LGW
Sbjct: 229 NVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWE 288
Query: 61 ARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNL 94
++ E + + + Y++ L
Sbjct: 289 PV--VPLE------------EGLNKAIHYFRKEL 308
Score = 45.0 bits (106), Expect = 1e-05
Identities = 10/61 (16%), Positives = 23/61 (37%)
Query: 533 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTV 592
NLG + ++L+ + + + G + + D + A+ LGW +
Sbjct: 234 VNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPL 293
Query: 593 K 593
+
Sbjct: 294 E 294
>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 347
Score = 110 bits (274), Expect = 6e-27
Identities = 87/176 (49%), Positives = 114/176 (64%), Gaps = 6/176 (3%)
Query: 51 DLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVY 110
DL ++ + ID VIHFA +KAVGES Q PL YY NN++ T+ LLE+M+ + V
Sbjct: 59 DLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS 118
Query: 111 QLVFSSSCTVYGE----PQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKE-WNI 165
+ VFSSS TVYG+ P +PI E+ P G N YG TK+ IE +L DL + K+ W
Sbjct: 119 KFVFSSSATVYGDATRFPNMIPIPEECPLGPT-NPYGHTKYAIENILNDLYNSDKKSWKF 177
Query: 166 ISLRYFNPVGAHPSGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGT 221
LRYFNP+GAHPSG IGEDP N++PY+AQVA+G + +FG DY++ DGT
Sbjct: 178 AILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGT 233
Score = 89.7 bits (221), Expect = 4e-20
Identities = 97/375 (25%), Positives = 146/375 (38%), Gaps = 77/375 (20%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
V DN NS T S+ +E T + FY DL D+ L ++F ++ ID VIHF
Sbjct: 27 DCVVADNLSNS-----TYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHF 81
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGE----PQFLPI 338
A +KAVGES Q PL YY NN++ T+ LLE+M+ + V + VFSSS TVYG+ P +PI
Sbjct: 82 AGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPI 141
Query: 339 TEDHPTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRT 398
E+ P G N Y G ++ + + K + G L+
Sbjct: 142 PEECPLGPT-NPY----GHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGE 196
Query: 399 FERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLR 458
N +PY+ V + YIF G + +R
Sbjct: 197 DPLGIPNNLLPYMAQVA-----------------VGRREKLYIF---GDDYDSRDGTPIR 236
Query: 459 TFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLR 518
+ V +I + E +NLG+G+G++V ++
Sbjct: 237 DYIHVVDLAKGHIAAL-------------QYLEAYNENEGLCREWNLGSGKGSTVFEVYH 283
Query: 519 TFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTD 578
F + +G +PY RR GD++++ A D
Sbjct: 284 AFCKASGIDLPYKV------------------------------TGRRAGDVLNLTAKPD 313
Query: 579 LAQRELGWSARCTVK 593
A+REL W V+
Sbjct: 314 RAKRELKWQTELQVE 328
Score = 60.1 bits (144), Expect = 2e-10
Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
Query: 1 MINKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWS 60
+ + +NLG+G+G++V ++ F + +G +PY V RR GD++++ A D A++EL W
Sbjct: 263 GLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQ 322
Query: 61 ARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNN 93
++ +S ++ + N
Sbjct: 323 TE--LQVE------------DSCKDLWKWTTEN 341
>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 346
Score = 107 bits (266), Expect = 7e-26
Identities = 113/283 (39%), Positives = 155/283 (54%), Gaps = 31/283 (10%)
Query: 47 YANTDLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKS 106
+ D+ + + VIHFA +KAVGES+Q+PL YY+ NL TI LLE+MK+
Sbjct: 62 FEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKA 121
Query: 107 HGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNII 166
HGV LVFSSS TVYG PQ+LP+ E HPTG N YGK+K FIEEM++DL +A K WN +
Sbjct: 122 HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAV 181
Query: 167 SLRYFNPVGAHPSGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGTGK--- 223
LRYFNP GAH SG IGEDP N+MPY++QVAIG + VFG DY+TEDGTG
Sbjct: 182 LLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY 241
Query: 224 VVAIDNFVNSVHIGDTPCS--------------------IRAIEQFTGKKVDFYSCDLVD 263
+ +D + ++A+E+ +GKK+ + V
Sbjct: 242 IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYK----VV 297
Query: 264 KNRLGEIFAKH-DIDC---VIHFAAVKAVGESMQEPLMYYKNN 302
R G++ A + + + + A + ++ + K N
Sbjct: 298 ARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQN 340
Score = 75.1 bits (183), Expect = 3e-15
Identities = 99/274 (36%), Positives = 138/274 (50%), Gaps = 29/274 (10%)
Query: 223 KVVAIDNFVNSVH-IGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIH 281
V IDNF N+ G P S+R +++ TG+ V+F D++D+ L +F K+ VIH
Sbjct: 28 LPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIH 87
Query: 282 FAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITED 341
FA +KAVGES+Q+PL YY+ NL TI LLE+MK+HGV LVFSSS TVYG PQ+LP+ E
Sbjct: 88 FAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEA 147
Query: 342 HPTGNIKNFYNLGTGQGTSVLQ------------LLRTFERVTGNKPVPYIFYNLGTGQG 389
HPTG N Y +++ LLR F TG + +G
Sbjct: 148 HPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYF-NPTG----AHASGCIGEDPQ 202
Query: 390 TSVLQLLRTFERV-TGNKPVPYIF---YNLGTGQGT-------SVLQLLRTFERVTGKPV 438
L+ +V G + +F Y+ G G + + R +
Sbjct: 203 GIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQC 262
Query: 439 PYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIF 472
YNLGTG G SVLQ+++ E+ +GK +PY
Sbjct: 263 GCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKV 296
Score = 60.5 bits (145), Expect = 2e-10
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 14/93 (15%)
Query: 1 MINKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWS 60
+ YNLGTG G SVLQ+++ E+ +GK +PY V ARREGD+ + YAN LAQ+ELGW+
Sbjct: 262 CGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWT 321
Query: 61 ARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNN 93
A +D ++ + K N
Sbjct: 322 AA--LGLD------------RMCEDLWRWQKQN 340
Score = 59.7 bits (143), Expect = 3e-10
Identities = 34/65 (52%), Positives = 44/65 (67%)
Query: 529 PYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSA 588
YNLGTG G SVLQ+++ E+ +GK +PY V ARREGD+ + YAN LAQ ELGW+A
Sbjct: 263 GCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTA 322
Query: 589 RCTVK 593
+
Sbjct: 323 ALGLD 327
>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 361
Score = 104 bits (261), Expect = 4e-25
Identities = 54/274 (19%), Positives = 92/274 (33%), Gaps = 31/274 (11%)
Query: 218 EDGTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDID 277
++ VV ID + ++ S+ I + + +F D+ D + IF ++ D
Sbjct: 22 KNTQDTVVNIDKLTYAGNLE----SLSDISE--SNRYNFEHADICDSAEITRIFEQYQPD 75
Query: 278 CVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGV---------YQLVFSSSCT 328
V+H AA V S+ P + + N++ T LLEV + + ++ S+
Sbjct: 76 AVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDE 135
Query: 329 VYGEPQFLPITEDHPTGNIKNFYNLGTGQ---GTSVL---QLLRTFERVTGNKPVPYIFY 382
VYG+ E+ T + S L+R + R G +
Sbjct: 136 VYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCS 195
Query: 383 NL-GTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGT----SVLQLLRTFERVTGKP 437
N G L + KP+P G G V R V +
Sbjct: 196 NNYGPYHFPEKL-IPLVILNALEGKPLPI----YGKGDQIRDWLYVEDHARALHMVVTEG 250
Query: 438 VPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYI 471
YN+G L ++ T + + VP
Sbjct: 251 KAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKA 284
Score = 104 bits (260), Expect = 5e-25
Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 30/180 (16%)
Query: 51 DLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGV- 109
D+ + D V+H AA V S+ P + + N++ T LLEV + +
Sbjct: 58 DICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSA 117
Query: 110 --------YQLVFSSSCTVYGEPQF---------LPITEDHPTGNIKNVYGKTKHFIEEM 152
++ S+ VYG+ LP+ + + Y +K + +
Sbjct: 118 LGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHL 177
Query: 153 LKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFG 212
++ + + I N G P ++P + A+ KP ++G
Sbjct: 178 VRAWRRTYG-LPTIVTNCSNNYG----------PYHFPEKLIPLVILNALEGKP-LPIYG 225
Score = 45.1 bits (106), Expect = 1e-05
Identities = 33/153 (21%), Positives = 44/153 (28%), Gaps = 18/153 (11%)
Query: 455 QLLRTFERVTGKPV--PYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGT- 511
L+R + R G P N G L L + GKP+P G G
Sbjct: 176 HLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPI----YGKGDQIR 231
Query: 512 ---SVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTF--------ERVTGKPVPY 560
V R V + YN+G L ++ T + T
Sbjct: 232 DWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQI 291
Query: 561 IVEARREGDIVSMYANTDLAQRELGWSARCTVK 593
A R G + RELGW T +
Sbjct: 292 TYVADRPGHDRRYAIDAGKISRELGWKPLETFE 324
Score = 42.4 bits (99), Expect = 1e-04
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 8/69 (11%)
Query: 2 INKFYNLGTGQGTSVLQLLRTF--------ERVTGKPVPYIVEARREGDIVSMYANTDLA 53
+ YN+G L ++ T + T A R G +
Sbjct: 252 AGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKI 311
Query: 54 QKELGWSAR 62
+ELGW
Sbjct: 312 SRELGWKPL 320
>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose
epimerase/reductase (GDP-fucose synthetase) {Escherichia
coli [TaxId: 562]}
Length = 315
Score = 102 bits (254), Expect = 1e-24
Identities = 25/204 (12%), Positives = 61/204 (29%), Gaps = 8/204 (3%)
Query: 43 IVSMYANTDLAQKELGWSARCTHDIDCVIHFA-AVKAVGESMQEPLMYYKNNLIATINLL 101
++ +L + ID V A V + + P + N++ N++
Sbjct: 31 VLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNII 90
Query: 102 EVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHPTG----NIKNVYGKTKHFIEEMLKDLS 157
+ V +L+F S +Y + P+ E Y K ++ + +
Sbjct: 91 HAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYN 150
Query: 158 KAHKEWNIISLRYFNPVGAHPSGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYET 217
+ + + S+ N G P + ++ + P V+G+
Sbjct: 151 RQYG-RDYRSVMPTNLYG--PHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPM 207
Query: 218 EDGTGKVVAIDNFVNSVHIGDTPC 241
+ ++ + +
Sbjct: 208 REFLHVDDMAAASIHVMELAHEVW 231
Score = 82.2 bits (202), Expect = 1e-17
Identities = 37/238 (15%), Positives = 71/238 (29%), Gaps = 20/238 (8%)
Query: 255 DFYSCDLVDKNRLGEIFAKHDIDCVIHFA-AVKAVGESMQEPLMYYKNNLIATINLLEVM 313
+L+D + + FA ID V A V + + P + N++ N++
Sbjct: 34 TRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAA 93
Query: 314 KSHGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNFYNLGTGQG-TSVLQLLRTFERVT 372
+ V +L+F S +Y + P+ E N + ++L ++ R
Sbjct: 94 HQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY 153
Query: 373 GNKPV---------PYIFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSV 423
G P+ ++ L V + V
Sbjct: 154 GRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHV 213
Query: 424 LQLLRTFERVTGKPVPYIF---------YNLGTGQGTSVLQLLRTFERVTGKPVPYIF 472
+ V N+GTG ++ +L +T +V G +F
Sbjct: 214 DDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVF 271
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 347
Score = 100 bits (249), Expect = 1e-23
Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 5/147 (3%)
Query: 51 DLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVY 110
DL + + A V S + + T+ LL+ +K+ G+
Sbjct: 64 DLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLI 123
Query: 111 Q---LVFSSSCTVYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIIS 167
+S+ +YG+ Q +P E P ++ YG K + ++ + +A+ ++
Sbjct: 124 NSVKFYQASTSELYGKVQEIPQKETTPF-YPRSPYGAAKLYAYWIVVNFREAYN-LFAVN 181
Query: 168 LRYFNPVGAHPSGRIGEDPTKSFTNIM 194
FN +
Sbjct: 182 GILFNHESPRRGANFVTRKISRSVAKI 208
Score = 87.7 bits (216), Expect = 2e-19
Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 4/132 (3%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
+V I +S + G + + + + DL D L +I + + +
Sbjct: 27 EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNL 86
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQ---LVFSSSCTVYGEPQFLPIT 339
A V S + + T+ LL+ +K+ G+ +S+ +YG+ Q +P
Sbjct: 87 GAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQK 146
Query: 340 EDHPTGNIKNFY 351
E P ++ Y
Sbjct: 147 ETTPF-YPRSPY 157
Score = 36.9 bits (84), Expect = 0.006
Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 10/77 (12%)
Query: 17 LQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHFAAV 76
+ + V ++ R ++ + + A+++L W R D
Sbjct: 281 ENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPR--VAFD-------- 330
Query: 77 KAVGESMQEPLMYYKNN 93
+ V E + + + N
Sbjct: 331 ELVREMVHADVELMRTN 347
Score = 34.2 bits (77), Expect = 0.041
Identities = 6/50 (12%), Positives = 17/50 (34%)
Query: 544 LQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVK 593
+ + V ++ R ++ + + A+++L W R
Sbjct: 281 ENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFD 330
>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptomyces venezuelae [TaxId: 54571]}
Length = 322
Score = 93.3 bits (231), Expect = 2e-21
Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 13/154 (8%)
Query: 59 WSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSC 118
AR +D ++HFAA V S+ ++ + N+ T LL+ GV ++V S+
Sbjct: 69 LLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTN 128
Query: 119 TVYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHP 178
VYG TE P + Y +K + + + + + ++ R N G
Sbjct: 129 QVYGSIDSGSWTESSPL-EPNSPYAASKAGSDLVARAYHRTYG-LDVRITRCCNNYG--- 183
Query: 179 SGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFG 212
P + ++P + ++G
Sbjct: 184 -------PYQHPEKLIPLFVTNLLDGGT-LPLYG 209
Score = 76.0 bits (186), Expect = 1e-15
Identities = 45/262 (17%), Positives = 77/262 (29%), Gaps = 28/262 (10%)
Query: 220 GTGKVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCV 279
+V+ +D+ + + ++ F D+ D +D +
Sbjct: 29 PADEVIVLDSLTYAGNR------ANLAPVDADPRLRFVHGDIRDAGL--LARELRGVDAI 80
Query: 280 IHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPIT 339
+HFAA V S+ ++ + N+ T LL+ GV ++V S+ VYG T
Sbjct: 81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWT 140
Query: 340 EDHPTGNIKNFYNLGTGQGTSVL---QLLRTFERVTGNKPVPYIFYNL-GTGQGTSVLQL 395
E P + Y S + R + R G N G Q L +
Sbjct: 141 ESSPL-EPNSPY------AASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKL-I 192
Query: 396 LRTFERVTGNKPVPYIFYNLGTGQGT----SVLQLLRTFERVTGKPVPYIFYNLGTGQGT 451
+ +P G G R V Y++G G
Sbjct: 193 PLFVTNLLDGGTLPL----YGDGANVREWVHTDDHCRGIALVLAGGRAGEIYHIGGGLEL 248
Query: 452 SVLQLLRTFERVTGKPVPYIFY 473
+ +L G +
Sbjct: 249 TNRELTGILLDSLGADWSSVRK 270
Score = 44.4 bits (104), Expect = 2e-05
Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 9/106 (8%)
Query: 493 VTGKPVPYIFYNLGTGQGT----SVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLR 548
+ G +P G G R V Y++G G + +L
Sbjct: 200 LDGGTLPL----YGDGANVREWVHTDDHCRGIALVLAGGRAGEIYHIGGGLELTNRELTG 255
Query: 549 TFERVTGKPVPYIVE-ARREGDIVSMYANTDLAQRELGWSARCTVK 593
G + + A R+G + + +RELG+ + +
Sbjct: 256 ILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFA 301
Score = 42.5 bits (99), Expect = 8e-05
Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 15/92 (16%)
Query: 3 NKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVE-ARREGDIVSMYANTDLAQKELGWSA 61
+ Y++G G + +L G + + A R+G + + ++ELG+
Sbjct: 237 GEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRP 296
Query: 62 RCTHDIDCVIHFAAVKAVGESMQEPLMYYKNN 93
+ + + + +Y+ N
Sbjct: 297 Q--VSFA------------DGLARTVRWYREN 314
>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 341
Score = 91.9 bits (227), Expect = 7e-21
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 9/150 (6%)
Query: 63 CTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYG 122
+D V+H AA+ +V S+ +P+ N+ +N+L + V +++S + YG
Sbjct: 88 ACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYG 147
Query: 123 EPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRI 182
+ LP ED G + Y TK+ E S+ + ++ I LRYFN G
Sbjct: 148 DHPGLPKVEDTI-GKPLSPYAVTKYVNELYADVFSRCYG-FSTIGLRYFNVFGRR----- 200
Query: 183 GEDPTKSFTNIMPYLAQVAIGSKPHFTVFG 212
+DP ++ ++P I + G
Sbjct: 201 -QDPNGAYAAVIPKWTSSMIQGDD-VYING 228
Score = 68.1 bits (165), Expect = 6e-13
Identities = 45/250 (18%), Positives = 84/250 (33%), Gaps = 13/250 (5%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
KVV +DNF H + + + F D+ + + A +D V+H
Sbjct: 42 KVVGLDNFATG-HQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDC--NNACAGVDYVLHQ 98
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
AA+ +V S+ +P+ N+ +N+L + V +++S + YG+ LP ED
Sbjct: 99 AALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDT 158
Query: 343 PTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNL----GTGQGTSVLQLLRT 398
G + Y + F R G + ++N+ G + +
Sbjct: 159 I-GKPLSPYAVTKYVNE---LYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKW 214
Query: 399 FERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERV--TGKPVPYIFYNLGTGQGTSVLQL 456
+ V + + ++ G YN+ G TS+ QL
Sbjct: 215 TSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQL 274
Query: 457 LRTFERVTGK 466
+
Sbjct: 275 FFALRDGLAE 284
Score = 40.3 bits (93), Expect = 4e-04
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 19/99 (19%)
Query: 1 MINKFYNLGTGQGTSVLQLLRTFERVTGK-----PVPYIVEARREGDIVSMYANTDLAQK 55
N+ YN+ G TS+ QL + + REGD+ A+ A K
Sbjct: 256 ARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAK 315
Query: 56 ELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNL 94
LG++ + +D+ + + +Y L
Sbjct: 316 LLGYAPK--YDVS------------AGVALAMPWYIMFL 340
Score = 39.2 bits (90), Expect = 0.001
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 526 KPVPYIFYNLGTGQGTSVLQLLRTFERVTGK-----PVPYIVEARREGDIVSMYANTDLA 580
YN+ G TS+ QL + + REGD+ A+ A
Sbjct: 254 LDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKA 313
Query: 581 QRELGWSARCTVK 593
+ LG++ + V
Sbjct: 314 AKLLGYAPKYDVS 326
>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi
[TaxId: 90370]}
Length = 338
Score = 80.2 bits (196), Expect = 6e-17
Identities = 47/372 (12%), Positives = 92/372 (24%), Gaps = 73/372 (19%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
++ DN ++ + +F D+ +KN + + K+ D H
Sbjct: 26 DLIVFDNLSRKGATD----NLHWLSSL--GNFEFVHGDIRNKNDVTRLITKYMPDSCFHL 79
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGV-YQLVFSSSCTVYGEPQFLPITED 341
A A+ S+ P M ++ N+ T+NLLE ++ + +++SS+ VYG+ + E
Sbjct: 80 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNET 139
Query: 342 HPTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFER 401
+ N ++
Sbjct: 140 ETRYTCVDKPN------------GYDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTV 187
Query: 402 VTGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFE 461
V + + QG + E G P+ G +R
Sbjct: 188 VFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQ--------VRDV- 238
Query: 462 RVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFE 521
+ V+ S+L+L + E
Sbjct: 239 ---------------LHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLE 283
Query: 522 RVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQ 581
+ + RE D A+
Sbjct: 284 DYCNIDMRFTN------------------------------LPVRESDQRVFVADIKKIT 313
Query: 582 RELGWSARCTVK 593
+ WS + + K
Sbjct: 314 NAIDWSPKVSAK 325
Score = 59.0 bits (141), Expect = 5e-10
Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 20/185 (10%)
Query: 51 DLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGV- 109
D+ K + D H A A+ S+ P M ++ N+ T+NLLE ++ +
Sbjct: 57 DIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSN 116
Query: 110 YQLVFSSSCTVYGEPQFLPITEDHPTG---------------NIKNVYGKTKHFIEEMLK 154
+++SS+ VYG+ + E + + YG +K ++ +
Sbjct: 117 CNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYML 176
Query: 155 DLSKAHKEWNIISLRYFNPVGAHPSGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGAD 214
D ++ ++ G + ++ G FT+ G
Sbjct: 177 DYARIFGLNTVVFRHSSMYGGRQFATYDQGW----VGWFCQKAVEIKNGINKPFTISGNG 232
Query: 215 YETED 219
+ D
Sbjct: 233 KQVRD 237
Score = 48.2 bits (113), Expect = 1e-06
Identities = 10/58 (17%), Positives = 18/58 (31%)
Query: 5 FYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSAR 62
S+L+L + E + + RE D A+ + WS +
Sbjct: 264 NIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPK 321
>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId:
5691]}
Length = 383
Score = 67.1 bits (162), Expect = 2e-12
Identities = 89/408 (21%), Positives = 152/408 (37%), Gaps = 73/408 (17%)
Query: 202 IGSKPHFTVFGADYETEDGTGKVVAIDNFVNS----VHIGDTPCSIRAIEQFTG------ 251
IGS HF D VV +D+ V + H+ R ++Q G
Sbjct: 14 IGS--HF----VRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWA 67
Query: 252 -KKVDFYSCDLVDKNRLGEIFAKHD-IDCVIHFAAVKAVGESMQEPLMYYKNNLIATINL 309
+ D+ +++ L +F +H ID V+H A AVGES+++PL YY NN++ + L
Sbjct: 68 DRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRL 127
Query: 310 LEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNFYNLGTGQGTSVL---QLLR 366
L+ M H +++FSSS ++G P ++ + +I + + G S L +++R
Sbjct: 128 LQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIR 187
Query: 367 TFERVTGNKPVPYIFYNL-GTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQ 425
G K + ++N G + + + + + +P I + +
Sbjct: 188 DCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHL-----IPIILGRV-MSDIAPDQR 241
Query: 426 LLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQ 485
L + T K +P + T GT V R + V
Sbjct: 242 LTIHEDASTDKRMPIFGTDYPTPDGTCV----RDY--------------------VHVCD 277
Query: 486 LLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQ 545
L + K + +NLGT +G SV +
Sbjct: 278 LASAHILALDYVEKLGPND---------------------KSKYFSVFNLGTSRGYSVRE 316
Query: 546 LLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVK 593
++ + TG P+P RREGD + A +D A+ LGW +
Sbjct: 317 VIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTL 364
Score = 64.8 bits (156), Expect = 9e-12
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 2 INKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSA 61
+NLGT +G SV +++ + TG P+P RREGD + A +D A++ LGW
Sbjct: 300 YFSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKP 359
Query: 62 R 62
+
Sbjct: 360 K 360
Score = 44.0 bits (102), Expect = 4e-05
Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 23/189 (12%)
Query: 54 QKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGV---- 109
+ L ID V+H A AVGES+++PL YY NN++ + LL+ M H
Sbjct: 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKII 140
Query: 110 --YQLVFSSSCTVYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIIS 167
+ T+ + + + ++ YG++K E M++D ++A+ I
Sbjct: 141 FSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYG-IKGIC 199
Query: 168 LRYFNPVGAHPSGRIGEDPTKSFTNIMPYLAQVAIGSKP---------------HFTVFG 212
LRYFN GAH G IGE + T+++P + + +FG
Sbjct: 200 LRYFNACGAHEDGDIGEHY-QGSTHLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPIFG 258
Query: 213 ADYETEDGT 221
DY T DGT
Sbjct: 259 TDYPTPDGT 267
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 321
Score = 65.4 bits (158), Expect = 3e-12
Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 9/165 (5%)
Query: 51 DLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVY 110
D+A A V + AA VG S +P+ + + +LLE ++
Sbjct: 57 DMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPE 116
Query: 111 QLVF-SSSCTVYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNIISLR 169
+ +S+ ++G Q E+ P ++ YG K + + + ++ + S
Sbjct: 117 TRFYQASTSEMFGLIQAERQDENTPFYP-RSPYGVAKLYGHWITVNYRESFG-LHASSGI 174
Query: 170 YFNPVGAHPSGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGAD 214
FN + +A++ +G + + D
Sbjct: 175 LFNHESPLR------GIEFVTRKVTDAVARIKLGKQQELRLGNVD 213
Score = 48.1 bits (113), Expect = 2e-06
Identities = 38/254 (14%), Positives = 78/254 (30%), Gaps = 16/254 (6%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
+V + +S DT +R + + + D+ D + K V +
Sbjct: 26 RVHGLVARRSS----DTRWRLRELGIE--GDIQYEDGDMADACSVQRAVIKAQPQEVYNL 79
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVF-SSSCTVYGEPQFLPITED 341
AA VG S +P+ + + +LLE ++ + +S+ ++G Q E+
Sbjct: 80 AAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN 139
Query: 342 HPTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLG---TGQGTSVLQLLRT 398
P ++ Y + G + + G I +N G ++
Sbjct: 140 TPFYP-RSPYGVAKLYGH---WITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDA 195
Query: 399 FERVTGNKPVPYIFYNL-GTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLL 457
R+ K N+ + + + Y + TG T+V +
Sbjct: 196 VARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDKADD-YVVATGVTTTVRDMC 254
Query: 458 RTFERVTGKPVPYI 471
+ G
Sbjct: 255 QIAFEHVGLDYRDF 268
Score = 38.8 bits (89), Expect = 0.001
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 533 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVE----ARREGDIVSMYANTDLAQRELGWSA 588
Y + TG T+V + + G ++ R ++ + N AQR LGW
Sbjct: 240 YVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKP 299
Query: 589 RCTVK 593
R ++
Sbjct: 300 RTSLD 304
Score = 38.1 bits (87), Expect = 0.002
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 6 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVE----ARREGDIVSMYANTDLAQKELGWSA 61
Y + TG T+V + + G ++ R ++ + N AQ+ LGW
Sbjct: 240 YVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKP 299
Query: 62 R 62
R
Sbjct: 300 R 300
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 346
Score = 65.0 bits (157), Expect = 6e-12
Identities = 28/139 (20%), Positives = 46/139 (33%), Gaps = 17/139 (12%)
Query: 51 DLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVY 110
D+A EL D H+AA S+ +P + N I T LLE + + +
Sbjct: 60 DIADAELVDKLAAKADAIV--HYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIR 117
Query: 111 QLVFSSSCTVYGE------------PQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSK 158
S+ VYG+ T + N + Y TK + ++K +
Sbjct: 118 F-HHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNY-NPSSPYSSTKAASDLIVKAWVR 175
Query: 159 AHKEWNIISLRYFNPVGAH 177
+ N G +
Sbjct: 176 SFG-VKATISNCSNNYGPY 193
Score = 38.0 bits (87), Expect = 0.002
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 13/71 (18%)
Query: 23 FERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHFAAVKAVGES 82
E++ Y R G + + + ELGW+ + T D E
Sbjct: 266 LEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFT-DFS------------EG 312
Query: 83 MQEPLMYYKNN 93
++E + +Y +N
Sbjct: 313 LEETIQWYTDN 323
Score = 36.9 bits (84), Expect = 0.005
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 550 FERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCT 591
E++ Y R G + + + ELGW+ + T
Sbjct: 266 LEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFT 307
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 363
Score = 56.1 bits (134), Expect = 5e-09
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 8/136 (5%)
Query: 50 TDLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGV 109
DL E D + + NN + + N++E + +G+
Sbjct: 65 VDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHS-VIMYNNTMISFNMIEAARINGI 123
Query: 110 YQLVFSSSCTVYGEPQFLPITEDHP------TGNIKNVYGKTKHFIEEMLKDLSKAHKEW 163
+ ++SS +Y E + L T ++ +G K EE+ K +K
Sbjct: 124 KRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFG-I 182
Query: 164 NIISLRYFNPVGAHPS 179
R+ N G +
Sbjct: 183 ECRIGRFHNIYGPFGT 198
Score = 45.3 bits (106), Expect = 1e-05
Identities = 12/93 (12%), Positives = 33/93 (35%), Gaps = 15/93 (16%)
Query: 2 INKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSA 61
+ N+G+ + S+ ++ K +P I + ++ +L +++LGW+
Sbjct: 251 FREPVNIGSDEMVSMNEMAEMVLSFEEKKLP-IHHIPGPEGVRGRNSDNNLIKEKLGWAP 309
Query: 62 RCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNL 94
+ E ++ + K +
Sbjct: 310 N--MRLK------------EGLRITYFWIKEQI 328
Score = 43.8 bits (102), Expect = 4e-05
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 533 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTV 592
N+G+ + S+ ++ K +P I + ++ +L + +LGW+ +
Sbjct: 255 VNIGSDEMVSMNEMAEMVLSFEEKKLP-IHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRL 313
Query: 593 K 593
K
Sbjct: 314 K 314
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 339
Score = 53.1 bits (126), Expect = 4e-08
Identities = 31/175 (17%), Positives = 54/175 (30%), Gaps = 13/175 (7%)
Query: 51 DLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMK----S 106
DL D V + AA V S + P + LLE ++
Sbjct: 64 DLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTID 123
Query: 107 HGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNVYGKTKHFIEEMLKDLSKAHKEWNII 166
G + + + P +E P + ++ Y +K + +A+
Sbjct: 124 SGRTVKYYQAGSSEMFGSTPPPQSETTPF-HPRSPYAASKCAAHWYTVNYREAYG-LFAC 181
Query: 167 SLRYFNPVGAHPSGRIGEDPTKSFTNIMPYLAQVAIGSKPHFTVFGADYETEDGT 221
+ FN H S R GE+ I L ++ +G + G + D
Sbjct: 182 NGILFN----HESPRRGENFVTRK--ITRALGRIKVGLQT-KLFLGNLQASRDWG 229
Score = 48.5 bits (114), Expect = 1e-06
Identities = 19/127 (14%), Positives = 36/127 (28%), Gaps = 4/127 (3%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
+V + ++ + + + DL D + L D V +
Sbjct: 27 EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPDEVYNL 86
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMK----SHGVYQLVFSSSCTVYGEPQFLPI 338
AA V S + P + LLE ++ G + + + P
Sbjct: 87 AAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQ 146
Query: 339 TEDHPTG 345
+E P
Sbjct: 147 SETTPFH 153
Score = 30.8 bits (68), Expect = 0.41
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 565 RREGDIVSMYANTDLAQRELGWSARCTVK 593
R ++ ++ + A+ LGW + +
Sbjct: 286 FRPAEVDNLQGDASKAKEVLGWKPQVGFE 314
Score = 30.8 bits (68), Expect = 0.45
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 38 RREGDIVSMYANTDLAQKELGWSAR 62
R ++ ++ + A++ LGW +
Sbjct: 286 FRPAEVDNLQGDASKAKEVLGWKPQ 310
>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant
arborvitae (Thuja plicata) [TaxId: 3316]}
Length = 312
Score = 43.6 bits (101), Expect = 4e-05
Identities = 22/249 (8%), Positives = 62/249 (24%), Gaps = 31/249 (12%)
Query: 223 KVVAIDNFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHDIDCVIHF 282
+ ++ + F L D RL + + D+
Sbjct: 29 PTYVLFRPEV----VSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISALA 84
Query: 283 AAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDH 342
++++ + L+E +K G + S + D
Sbjct: 85 G-------------GVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMD---------PDI 122
Query: 343 PTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERV 402
++ + + T + Y G+ + + +
Sbjct: 123 MEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVL 182
Query: 403 TGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFER 462
+ GT ++ + + + Y S ++++ +ER
Sbjct: 183 IYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNK-----TMYIRPPMNILSQKEVIQIWER 237
Query: 463 VTGKPVPYI 471
++ + + I
Sbjct: 238 LSEQNLDKI 246
Score = 35.5 bits (80), Expect = 0.015
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 471 IFYNLGTGQGTSVLQLLRTFERVTGKPVPYI 501
Y S ++++ +ER++ + + I
Sbjct: 216 TMYIRPPMNILSQKEVIQIWERLSEQNLDKI 246
Score = 35.5 bits (80), Expect = 0.015
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 501 IFYNLGTGQGTSVLQLLRTFERVTGKPVPYI 531
Y S ++++ +ER++ + + I
Sbjct: 216 TMYIRPPMNILSQKEVIQIWERLSEQNLDKI 246
Score = 35.5 bits (80), Expect = 0.015
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 531 IFYNLGTGQGTSVLQLLRTFERVTGKPVPYI 561
Y S ++++ +ER++ + + I
Sbjct: 216 TMYIRPPMNILSQKEVIQIWERLSEQNLDKI 246
Score = 34.7 bits (78), Expect = 0.025
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 5 FYNLGTGQGTSVLQLLRTFERVTGKPVPYI 34
Y S ++++ +ER++ + + I
Sbjct: 217 MYIRPPMNILSQKEVIQIWERLSEQNLDKI 246
>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA
{Aspergillus nidulans [TaxId: 162425]}
Length = 350
Score = 41.6 bits (96), Expect = 2e-04
Identities = 27/233 (11%), Positives = 58/233 (24%), Gaps = 29/233 (12%)
Query: 240 PCSIRAIEQFTGKKVDFYSCDLVD-KNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMY 298
+ A E V + L++ + +F + + +
Sbjct: 37 LKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS--------------Q 82
Query: 299 YKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNFYNLGTGQG 358
+ + +L + K G Q SS + P Y G
Sbjct: 83 AGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLP 142
Query: 359 TSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTG 418
++ + T + + G + P+P++ G
Sbjct: 143 STFVYAGIYNNNFTSLPYPLFQMELMPDGTFEWHA-------PFDPDIPLPWLDAEHDVG 195
Query: 419 QGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYI 471
+ ++ G L + S +Q+ F R + V Y+
Sbjct: 196 PAL-LQIFKDGPQKWNGH-----RIALT-FETLSPVQVCAAFSRALNRRVTYV 241
Score = 35.0 bits (79), Expect = 0.024
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 2 INKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI 34
L + S +Q+ F R + V Y+
Sbjct: 210 NGHRIALT-FETLSPVQVCAAFSRALNRRVTYV 241
Score = 32.7 bits (73), Expect = 0.10
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 6/46 (13%)
Query: 456 LLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYI 501
++ G L + S +Q+ F R + V Y+
Sbjct: 202 FKDGPQKWNGH-----RIALT-FETLSPVQVCAAFSRALNRRVTYV 241
Score = 32.7 bits (73), Expect = 0.10
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 6/46 (13%)
Query: 486 LLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYI 531
++ G L + S +Q+ F R + V Y+
Sbjct: 202 FKDGPQKWNGH-----RIALT-FETLSPVQVCAAFSRALNRRVTYV 241
Score = 32.7 bits (73), Expect = 0.10
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 6/46 (13%)
Query: 516 LLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYI 561
++ G L + S +Q+ F R + V Y+
Sbjct: 202 FKDGPQKWNGH-----RIALT-FETLSPVQVCAAFSRALNRRVTYV 241
>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces
salmonicolor [TaxId: 5005]}
Length = 342
Score = 40.6 bits (93), Expect = 4e-04
Identities = 14/102 (13%), Positives = 27/102 (26%), Gaps = 2/102 (1%)
Query: 493 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTF-E 551
G+ P + S + + P GT +L TF +
Sbjct: 230 FNGEVSPA-LALMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRK 288
Query: 552 RVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVK 593
K P + + A + + LG +++
Sbjct: 289 LYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIE 330
Score = 37.5 bits (85), Expect = 0.004
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 1/58 (1%)
Query: 6 YNLGTGQGTSVLQLLRTF-ERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSAR 62
GT +L TF + K P + + A + K LG
Sbjct: 269 RVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGW 326
Score = 32.5 bits (72), Expect = 0.15
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 342 HPTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIF 381
I+ GT +L TF ++ +K P F
Sbjct: 260 LVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADF 299
Score = 31.3 bits (69), Expect = 0.35
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 374 NKPVPYIFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIF 412
P GT +L TF ++ +K P F
Sbjct: 261 VLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADF 299
Score = 30.6 bits (67), Expect = 0.54
Identities = 12/69 (17%), Positives = 17/69 (24%), Gaps = 1/69 (1%)
Query: 405 NKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTF-ERV 463
N V + S + + P GT +L TF +
Sbjct: 231 NGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLY 290
Query: 464 TGKPVPYIF 472
K P F
Sbjct: 291 PSKTFPADF 299
Score = 29.8 bits (65), Expect = 1.1
Identities = 12/71 (16%), Positives = 18/71 (25%), Gaps = 2/71 (2%)
Query: 433 VTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTF-E 491
G+ P + S + + P GT +L TF +
Sbjct: 230 FNGEVSPA-LALMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRK 288
Query: 492 RVTGKPVPYIF 502
K P F
Sbjct: 289 LYPSKTFPADF 299
>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 393
Score = 38.8 bits (88), Expect = 0.002
Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 17/99 (17%)
Query: 1 MINKFYNLGTGQGTSVLQLLRTFERVTGK-----PVPYIVEARREGDIVSMYANTDLAQK 55
+ SV +L + K + R E + A
Sbjct: 285 AGEFRVFNQFTEQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKL-M 343
Query: 56 ELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNL 94
ELG + D ++ +S+ + +K+ +
Sbjct: 344 ELGLEPH--YLSDSLL---------DSLLNFAVQFKDRV 371
Score = 38.0 bits (86), Expect = 0.002
Identities = 10/73 (13%), Positives = 15/73 (20%), Gaps = 6/73 (8%)
Query: 526 KPVPYIFYNLGTGQGTSVLQLLRTFERVTGK-----PVPYIVEARREGDIVSMYANTDLA 580
+ SV +L + K + R E + A
Sbjct: 283 AKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKL 342
Query: 581 QRELGWSARCTVK 593
ELG
Sbjct: 343 -MELGLEPHYLSD 354
>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 281
Score = 37.1 bits (84), Expect = 0.004
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Query: 254 VDFYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVM 313
D D+ + + + F + + VI+ AA AV + ++ + YK N I NL
Sbjct: 31 TDVQDLDITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAA 90
Query: 314 KSHGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNFY 351
S G + S+ V+ PITE +
Sbjct: 91 YSVGAEIVQISTDY-VFDGEAKEPITEFDEVNPQSAYG 127
>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase
(RmlD) {Salmonella enterica serovar typhimurium [TaxId:
90371]}
Length = 298
Score = 34.5 bits (77), Expect = 0.031
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 1/88 (1%)
Query: 256 FYSCDLVDKNRLGEIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKS 315
+ D + + E K D +++ AA AV ++ EP + N + + +
Sbjct: 35 EFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANE 94
Query: 316 HGVYQLVFSSSCTVYGEPQFLPITEDHP 343
G + + +S+ G P E
Sbjct: 95 TGAWVVHYSTDYVFPGTGDI-PWQETDA 121
>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia
pseudotuberculosis [TaxId: 633]}
Length = 356
Score = 34.4 bits (77), Expect = 0.031
Identities = 9/73 (12%), Positives = 28/73 (38%), Gaps = 15/73 (20%)
Query: 23 FERVTGKPVPYIVEA-RREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHFAAVKAVGE 81
+ G+ + ++ + + + A+ +LGW R +++
Sbjct: 278 MVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPR--WNLN------------T 323
Query: 82 SMQEPLMYYKNNL 94
+++ + ++KN L
Sbjct: 324 TLEYIVGWHKNWL 336
Score = 34.4 bits (77), Expect = 0.037
Identities = 6/45 (13%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 550 FERVTGKPVPYIVEA-RREGDIVSMYANTDLAQRELGWSARCTVK 593
+ G+ + ++ + + + A+ +LGW R +
Sbjct: 278 MVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPRWNLN 322
>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA
(PrmI) {Escherichia coli [TaxId: 562]}
Length = 342
Score = 34.2 bits (76), Expect = 0.043
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 14/57 (24%)
Query: 38 RREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHFAAVKAVGESMQEPLMYYKNNL 94
+ D+ + A + L W + D+ E++ E L ++ +
Sbjct: 296 KGYQDVEHRKPSIRNAHRCLDWEPK--IDMQ------------ETIDETLDFFLRTV 338
Score = 33.4 bits (74), Expect = 0.069
Identities = 12/94 (12%), Positives = 21/94 (22%), Gaps = 15/94 (15%)
Query: 515 QLLRTFERVTGKPVPYIFYNLGTGQGTSVLQLLRTFERVTGKPVPYI------------- 561
L R E + I S+ +L K
Sbjct: 231 ALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVES 290
Query: 562 --VEARREGDIVSMYANTDLAQRELGWSARCTVK 593
+ D+ + A R L W + ++
Sbjct: 291 SSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQ 324
>d1ryka_ a.60.11.1 (A:) Hypothetical protein YjbJ {Escherichia coli
[TaxId: 562]}
Length = 69
Score = 28.1 bits (63), Expect = 0.44
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 136 GNIKNVYGKTKHFIEEMLKDLSKAHKE-W 163
G I+ YG K E+ + D ++ W
Sbjct: 41 GKIQERYGYQKDQAEKEVVDWETRNEYRW 69
>d1c3ha_ b.22.1.1 (A:) 30 kDa adipocyte complement-related protein
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 137
Score = 28.8 bits (64), Expect = 0.92
Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 15/110 (13%)
Query: 318 VYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPV 377
+Y+ FS +PI N +N Y+ TG + N P
Sbjct: 3 MYRSAFSVGLETRVTVPNVPIRFTKIFYNQQNHYDGSTG-------------KFYCNIPG 49
Query: 378 PYIF-YNLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQL 426
Y F Y++ + L + + V Y N+ G+ +L L
Sbjct: 50 LYYFSYHITVYMKDVKVSLFKKDKAVLFT-YDQYQEKNVDQASGSVLLHL 98
>d1fiua_ c.52.1.10 (A:) Restriction endonuclease NgoIV {Neisseria
gonorrhoeae [TaxId: 485]}
Length = 286
Score = 28.8 bits (64), Expect = 1.9
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 28/70 (40%)
Query: 26 VTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHDIDCVIHFA------AVKAV 79
VT +P P + ++ LG T +IDCV HFA ++++
Sbjct: 219 VTAEPTP-----------------SRISSIALG-----TGEIDCVYHFALYELEQILQSL 256
Query: 80 GESMQEPLMY 89
L Y
Sbjct: 257 NYEDALDLFY 266
Score = 27.6 bits (61), Expect = 4.7
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 265 NRLGEI-FAKHDIDCVIHFA------AVKAVGESMQEPLMY 298
+R+ I +IDCV HFA ++++ L Y
Sbjct: 226 SRISSIALGTGEIDCVYHFALYELEQILQSLNYEDALDLFY 266
>d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln)
amidotransferase subunit B, GatB, N-terminal domain
{Staphylococcus aureus [TaxId: 1280]}
Length = 290
Score = 28.4 bits (63), Expect = 2.2
Identities = 24/130 (18%), Positives = 41/130 (31%), Gaps = 15/130 (11%)
Query: 246 IEQFTGKKVDFYSCDLVDKNRLG----EIFAKHDIDCVIHFAAVKAVGESMQEPLMYYKN 301
+E+ GK LVD NR G EI ++ DI A E ++ + Y
Sbjct: 120 MEEDAGKSTHKGEYSLVDLNRQGTPLIEIVSEPDIRSPKE---AYAYLEKLRSIIQYTGV 176
Query: 302 NLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNFYNLGTGQGTSV 361
+ +V G + + S YG+ +F E + +
Sbjct: 177 S--------DVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQ 228
Query: 362 LQLLRTFERV 371
+ L +
Sbjct: 229 EEELLNGGEI 238
>d1t6la1 d.131.1.2 (A:10-135) UL44 {Human cytomegalovirus, HHV-5
[TaxId: 10359]}
Length = 126
Score = 26.8 bits (59), Expect = 3.7
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 309 LLEVMKSHGVYQLVFSSSCTVYGEPQFLPITEDHPTGNIKNFYNL 353
+L+ ++SH V ++ F+SSC + F P T ++ T + NF L
Sbjct: 40 ILQTVRSHCVSKITFNSSCLYITDKSFQPKTINNSTPLLGNFMYL 84
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1,
ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 25.5 bits (56), Expect = 5.5
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 222 GKVVAID-NFVNSVHIGDTPCSIRAIEQFTGKKVDFYSCDLVDKNRLGEIFAKHD 275
G++VAI+ V V IG I+ ++ ++ V +N L +
Sbjct: 2 GRIVAINPARVPRV-IGKKGSMIKLLKSELDVQIV------VGQNGLIWVNGDRR 49
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase
3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 27.2 bits (59), Expect = 5.8
Identities = 18/137 (13%), Positives = 34/137 (24%), Gaps = 11/137 (8%)
Query: 8 LGTGQGTSVLQLLRTF-ERVTGKPVPYIVEARREGDIVSMYANTDLAQKELGWSARCTHD 66
+G G G + + ++V G I+ A + +L +
Sbjct: 42 VGCGTGILSMFAAKAGAKKVLGVDQSEILY----------QAMDIIRLNKLEDTITLIKG 91
Query: 67 IDCVIHFAAVKAVGESMQEPLMYYKNNLIATINLLEVMKSHGVYQLVFSSSCTVYGEPQF 126
+H K + + + L K V+ CT+
Sbjct: 92 KIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVS 151
Query: 127 LPITEDHPTGNIKNVYG 143
+VYG
Sbjct: 152 DVNKHADRIAFWDDVYG 168
>d1w6va1 d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hydrolase
15 {Human (Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 26.1 bits (57), Expect = 6.8
Identities = 8/50 (16%), Positives = 17/50 (34%)
Query: 146 KHFIEEMLKDLSKAHKEWNIISLRYFNPVGAHPSGRIGEDPTKSFTNIMP 195
+ I +LK + W ++ R+F + + N+ P
Sbjct: 13 RSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYP 62
>d1o91a_ b.22.1.1 (A:) Collagen NC1 trimerisation domain {Mouse (Mus
musculus), isoform VIII [TaxId: 10090]}
Length = 131
Score = 25.8 bits (56), Expect = 8.0
Identities = 24/104 (23%), Positives = 32/104 (30%), Gaps = 13/104 (12%)
Query: 323 FSSSCTVYGEPQFLPITEDHPTGNIKNFYNLGTGQGTSVLQLLRTFERVTGNKPVPYIFY 382
F++ TV P P+ D N + YN TG T P Y F
Sbjct: 5 FTAELTVPFPPVGAPVKFDKLLYNGRQNYNPQTG-------------IFTCEVPGVYYFA 51
Query: 383 NLGTGQGTSVLQLLRTFERVTGNKPVPYIFYNLGTGQGTSVLQL 426
+G +V L Y L G++VL L
Sbjct: 52 YHVHCKGGNVWVALFKNNEPMMYTYDEYKKGFLDQASGSAVLLL 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.414
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,306,587
Number of extensions: 115552
Number of successful extensions: 436
Number of sequences better than 10.0: 1
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 114
Length of query: 600
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 510
Effective length of database: 1,171,896
Effective search space: 597666960
Effective search space used: 597666960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)