BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16546
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 138 bits (347), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ E + YNLGTG G SVLQ++
Sbjct: 223 LNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLK-EQCGCRIYNLGTGTGYSVLQMV 281
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
+ E+ +GK +PY V ARREGD+ + YAN LAQ ELGW+A +++MC+
Sbjct: 282 QAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCE 331
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 138 bits (347), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ E + YNLGTG G SVLQ++
Sbjct: 223 LNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLK-EQCGCRIYNLGTGTGYSVLQMV 281
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
+ E+ +GK +PY V ARREGD+ + YAN LAQ ELGW+A +++MC+
Sbjct: 282 QAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCE 331
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 138 bits (347), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ E + YNLGTG G SVLQ++
Sbjct: 223 LNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLK-EQCGCRIYNLGTGTGYSVLQMV 281
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
+ E+ +GK +PY V ARREGD+ + YAN LAQ ELGW+A +++MC+
Sbjct: 282 QAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCE 331
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ VFG+DY T DGTG+RDYIHV+DLA GH+AAL+ L+ + NLGTG+G SVL+++
Sbjct: 219 LRVFGSDYPTPDGTGVRDYIHVVDLARGHIAALDALERRDASLTV-NLGTGRGYSVLEVV 277
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMC 110
R FE+ +G+ VPY + ARR GD+ YAN A +GW A +E+MC
Sbjct: 278 RAFEKASGRAVPYELVARRPGDVAECYANPAAAAETIGWKAERDLERMC 326
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL + + YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVV 273
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
F + GKPV Y RREGD+ + +A+ A REL W T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL + + YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVV 273
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
F + GKPV Y RREGD+ + +A+ A REL W T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL + + YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVV 273
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
F + GKPV Y RREGD+ + +A+ A REL W T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL + + YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVV 273
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
F + GKPV Y RREGD+ + +A+ A REL W T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL + + YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVV 273
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
F + GKPV Y RREGD+ + +A+ A REL W T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL + + YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVV 273
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
F + GKPV Y RREGD+ + +A+ A REL W T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL + + YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVV 273
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
F + GKPV Y RREGD+ + +A+ A REL W T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL + + YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVV 273
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
F + GKPV Y RREGD+ + +A+ A REL W T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL + + YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVV 273
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
F + GKPV Y RREGD+ + +A+ A REL W T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPACWADASKADRELNWRVTRTLDEMAQ 323
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL + + YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK-PGVHIYNLGAGVGNSVLDVV 273
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
F + GKPV Y RREGD+ + +A+ A REL W T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 71/111 (63%), Gaps = 3/111 (2%)
Query: 4 VFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLK---IKFYNLGTGQGTSVLQL 60
+FG DY + DGT IRDYIHV+DLA GH+AAL L+ + + +NLG+G+G++V ++
Sbjct: 232 IFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEV 291
Query: 61 LRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
F + +G +PY V RR GD++++ A D A+REL W VE CK
Sbjct: 292 YHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCK 342
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 5/107 (4%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQ--GEHLKIKFY---NLGTGQGTS 56
+ +FG DY T DGT +RDY+HV DLA H+ AL+ ++ G + K K++ NLGT +G S
Sbjct: 254 MPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYS 313
Query: 57 VLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSAR 103
V +++ + TG P+P RREGD + A +D A+ LGW +
Sbjct: 314 VREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPK 360
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQ--GEHLKIKFYNLGTGQGTSVLQ 59
I +FG DY T DGT IRDYIHV DL H L LQ GE FYNLG G G SV +
Sbjct: 206 IMMFGDDYNTPDGTCIRDYIHVEDLVAAHFLGLKDLQNGGES---DFYNLGNGNGFSVKE 262
Query: 60 LLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSAR 103
++ VT +P V RR GD + A++ A+ +LGW R
Sbjct: 263 IVDAVREVTNHEIPAEVAPRRAGDPARLVASSQKAKEKLGWDPR 306
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIV 76
+RDY++V D+A H AL L+G YN+GTG+G + ++L GK
Sbjct: 214 VRDYVYVGDVAEAHALALFSLEG------IYNVGTGEGHTTREVLMAVAEAAGKAPEVQP 267
Query: 77 EARREGDI 84
R GD+
Sbjct: 268 APPRPGDL 275
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 14 GTGIRDYIHVMDLAVGHVA-ALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV 72
G RD+I V D+A G +A A + G YN+ +G+ TS+ L +TG
Sbjct: 254 GVATRDFIFVEDVANGLIACAADGTPG-----GVYNIASGKETSIADLATKINEITGNNT 308
Query: 73 PYIVEARREGDIV-SMYANTDLAQRELGWSARCTVE 107
+R D + + + A+RELG+SA +++
Sbjct: 309 ELDRLPKRPWDNSGKRFGSPEKARRELGFSADVSID 344
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 33.5 bits (75), Expect = 0.028, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 13/107 (12%)
Query: 9 YGTEDGTGIRDYIHVMDLAVGHVAALNK--LQGEHLKIKFYNLGTGQGTSVLQLLRTFER 66
YGT G +RD+++V D HV A+ L+GE +I YN+ G+ + L++++ R
Sbjct: 208 YGT--GKNVRDWLYVED----HVRAIELVLLKGESREI--YNISAGEEKTNLEVVKIILR 259
Query: 67 VTGKPVPYI--VEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
+ GK I VE R D+ + + R+L W + T ++ K
Sbjct: 260 LMGKGEELIELVEDRPGHDLRYSLDSWKIT-RDLKWRPKYTFDEGIK 305
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 14 GTGIRDYIHVMDLAVG--HVAALNK---LQGEHLKIKFYNLGTGQGTSVLQLLRTFERVT 68
GT +R+++HV D+A HV L L+ + N+GTG ++ +L +T +V
Sbjct: 205 GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVV 264
Query: 69 GKPVPYIVEARR-EGDIVSMYANTDLAQRELGWSARCTVE 107
G + +A + +G + T L Q LGW ++E
Sbjct: 265 GYKGRVVFDASKPDGTPRKLLDVTRLHQ--LGWYHEISLE 302
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 14 GTGIRDYIHVMDLAVG--HVAALNK---LQGEHLKIKFYNLGTGQGTSVLQLLRTFERVT 68
GT +R+++HV D+A HV L L+ + N+GTG ++ +L +T +V
Sbjct: 205 GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVV 264
Query: 69 GKPVPYIVEARR-EGDIVSMYANTDLAQRELGWSARCTVE 107
G + +A + +G + T L Q LGW ++E
Sbjct: 265 GYKGRVVFDASKPDGTPRKLLDVTRLHQ--LGWYHEISLE 302
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 14 GTGIRDYIHVMDLAVG--HVAALNK---LQGEHLKIKFYNLGTGQGTSVLQLLRTFERVT 68
GT +R+++HV D+A HV L L+ + N+GTG ++ +L +T +V
Sbjct: 205 GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVV 264
Query: 69 GKPVPYIVEARR-EGDIVSMYANTDLAQRELGWSARCTVE 107
G + +A + +G + T L Q LGW ++E
Sbjct: 265 GYKGRVVFDASKPDGTPRKLLDVTRLHQ--LGWYHEISLE 302
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 14 GTGIRDYIHVMDLAVG--HVAALNK---LQGEHLKIKFYNLGTGQGTSVLQLLRTFERVT 68
GT +R+++HV D+A HV L L+ + N+GTG ++ +L +T +V
Sbjct: 205 GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVV 264
Query: 69 GKPVPYIVEARR-EGDIVSMYANTDLAQRELGWSARCTVE 107
G + +A + +G + T L Q LGW ++E
Sbjct: 265 GYKGRVVFDASKPDGTPRKLLDVTRLHQ--LGWYHEISLE 302
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 14 GTGIRDYIHVMDLAVG--HVAALNK---LQGEHLKIKFYNLGTGQGTSVLQLLRTFERVT 68
GT +R+++HV D+A HV L L+ + N+GTG ++ +L +T +V
Sbjct: 205 GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVV 264
Query: 69 GKPVPYIVEARR-EGDIVSMYANTDLAQRELGWSARCTVE 107
G + +A + +G + T L Q LGW ++E
Sbjct: 265 GYKGRVVFDASKPDGTPRKLLDVTRLHQ--LGWYHEISLE 302
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 14 GTGIRDYIHVMDLAVG--HVAALNK---LQGEHLKIKFYNLGTGQGTSVLQLLRTFERVT 68
GT +R+++HV D+A HV L L+ + N+GTG ++ L +T +V
Sbjct: 205 GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRDLAQTIAKVV 264
Query: 69 GKPVPYIVEARR-EGDIVSMYANTDLAQRELGWSARCTVE 107
G + +A + +G + T L Q LGW ++E
Sbjct: 265 GYKGRVVFDASKPDGTPRKLLDVTRLHQ--LGWYHEISLE 302
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 9 YGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ---GTSVLQLLRTFE 65
YG DG +RD++HV D H +A++ + + + YN+G V++ + T
Sbjct: 231 YG--DGLNVRDWLHVTD----HCSAIDVVLHKGRVGEVYNIGGNNEKTNVEVVEQIITLL 284
Query: 66 RVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEK 108
T K + Y+ + R G N + + E W + T E+
Sbjct: 285 GKTKKDIEYVTD--RLGHDRRYAINAEKXKNEFDWEPKYTFEQ 325
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 6/105 (5%)
Query: 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTG-KP 71
DGT + Y++V D +AA K + N+G VL + + V G +P
Sbjct: 192 DGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRP 251
Query: 72 ----VPYIVEAR-REGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
VP + R GD+ M + GW T + K
Sbjct: 252 EIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSAEAVK 296
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 6/105 (5%)
Query: 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTG-KP 71
DGT + Y++V D +AA K + N+G VL + + V G +P
Sbjct: 196 DGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRP 255
Query: 72 ----VPYIVEAR-REGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
VP + R GD+ M + GW T + K
Sbjct: 256 EIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSAEAVK 300
>pdb|4G55|A Chain A, Clathrin Terminal Domain Complexed With Pitstop 2
Length = 369
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 20 YIHVMDLAVGHVAALNKLQGEHLKIKFYN------LGTGQGTSVLQLLRTFERVTGKPVP 73
YIH+ DL G +N++ GE + + + +G + VL + E + +P
Sbjct: 286 YIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI----IP 341
Query: 74 YIVEARREGDI-VSMYANTDLAQRE 97
YI + D+ + M +LA E
Sbjct: 342 YITNVLQNPDLALRMAVRNNLAGAE 366
>pdb|2B4V|A Chain A, Structural Basis For Utp Specificity Of Rna Editing
Tutases From Trypanosoma Brucei
Length = 468
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 9 YGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSV 57
YG ++ IR Y+H +A H A K G K N+G G G +
Sbjct: 254 YGVKNSYLIRHYLHNGPVAARHTAXAVKAWG-----KATNVGAGSGAXL 297
>pdb|2XZG|A Chain A, Clathrin Terminal Domain Complexed With Pitstop 1
Length = 365
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 20 YIHVMDLAVGHVAALNKLQGEHLKIKFYN------LGTGQGTSVLQLLRTFERVTGKPVP 73
YIH+ DL G +N++ GE + + + +G + VL + E + +P
Sbjct: 282 YIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI----IP 337
Query: 74 YIVEARREGDI-VSMYANTDLAQRE 97
YI + D+ + M +LA E
Sbjct: 338 YITNVLQNPDLALRMAVRNNLAGAE 362
>pdb|3A24|A Chain A, Crystal Structure Of Bt1871 Retaining Glycosidase
pdb|3A24|B Chain B, Crystal Structure Of Bt1871 Retaining Glycosidase
Length = 641
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 67 VTGKPVPYIVEARREGDIVSMYANTDLAQREL 98
+ GK YIV ARR+GD+ + TD + R++
Sbjct: 552 LDGKMGEYIVTARRKGDVWYVGGITDWSARDI 583
>pdb|1UTC|A Chain A, Clathrin Terminal Domain Complexed With Tlpwdlwtt
pdb|1UTC|B Chain B, Clathrin Terminal Domain Complexed With Tlpwdlwtt
pdb|3GC3|B Chain B, Crystal Structure Of Arrestin2s And Clathrin
pdb|3GD1|I Chain I, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
Length = 363
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 20 YIHVMDLAVGHVAALNKLQGEHLKIKFYN------LGTGQGTSVLQLLRTFERVTGKPVP 73
YIH+ DL G +N++ GE + + + +G + VL + E + +P
Sbjct: 281 YIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI----IP 336
Query: 74 YIVEARREGDI-VSMYANTDLAQRE 97
YI + D+ + M +LA E
Sbjct: 337 YITNVLQNPDLALRMAVRNNLAGAE 361
>pdb|1BPO|A Chain A, Clathrin Heavy-Chain Terminal Domain And Linker
pdb|1BPO|B Chain B, Clathrin Heavy-Chain Terminal Domain And Linker
pdb|1BPO|C Chain C, Clathrin Heavy-Chain Terminal Domain And Linker
Length = 494
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 20 YIHVMDLAVGHVAALNKLQGEHLKIKFYN------LGTGQGTSVLQLLRTFERVTGKPVP 73
YIH+ DL G +N++ GE + + + +G + VL + E + +P
Sbjct: 281 YIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI----IP 336
Query: 74 YIVEARREGDI-VSMYANTDLAQRE 97
YI + D+ + M +LA E
Sbjct: 337 YITNVLQNPDLALRMAVRNNLAGAE 361
>pdb|1C9I|A Chain A, Peptide-In-Groove Interactions Link Target Proteins To The
B-Propeller Of Clathrin
pdb|1C9I|B Chain B, Peptide-In-Groove Interactions Link Target Proteins To The
B-Propeller Of Clathrin
Length = 359
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 20 YIHVMDLAVGHVAALNKLQGEHLKIKFYN------LGTGQGTSVLQLLRTFERVTGKPVP 73
YIH+ DL G +N++ GE + + + +G + VL + E + +P
Sbjct: 281 YIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI----IP 336
Query: 74 YIVEARREGDI-VSMYANTDLA 94
YI + D+ + M +LA
Sbjct: 337 YITNVLQNPDLALRMAVRNNLA 358
>pdb|1C9L|A Chain A, Peptide-In-Groove Interactions Link Target Proteins To The
B-Propeller Of Clathrin
pdb|1C9L|B Chain B, Peptide-In-Groove Interactions Link Target Proteins To The
B-Propeller Of Clathrin
Length = 357
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 20 YIHVMDLAVGHVAALNKLQGEHLKIKFYN------LGTGQGTSVLQLLRTFERVTGKPVP 73
YIH+ DL G +N++ GE + + + +G + VL + E + +P
Sbjct: 279 YIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI----IP 334
Query: 74 YIVEARREGDI-VSMYANTDLA 94
YI + D+ + M +LA
Sbjct: 335 YITNVLQNPDLALRMAVRNNLA 356
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 13 DGTGIRDYIHVMDLAVGHVAALNK-LQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKP 71
+G +RD+IH D + G A L K GE I G VL+L+ E++
Sbjct: 220 EGKNVRDWIHTNDHSTGVWAILTKGRMGETYLIGA--DGEKNNKEVLELI--LEKMGQPK 275
Query: 72 VPYIVEARREGDIVSMYANTDLAQRELGWSARCT 105
Y R G + + + ELGW+ + T
Sbjct: 276 DAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFT 309
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,437,053
Number of Sequences: 62578
Number of extensions: 130056
Number of successful extensions: 407
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 53
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)