Query psy16546
Match_columns 111
No_of_seqs 114 out of 1211
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 23:59:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1087 GalE UDP-glucose 4-epi 99.9 4.9E-26 1.1E-30 149.5 10.8 109 2-111 206-315 (329)
2 COG1088 RfbB dTDP-D-glucose 4, 99.9 7.6E-23 1.6E-27 134.3 9.1 101 1-111 205-310 (340)
3 PLN02166 dTDP-glucose 4,6-dehy 99.8 1.2E-20 2.5E-25 132.1 10.4 100 1-111 318-417 (436)
4 KOG1429|consensus 99.8 9.8E-21 2.1E-25 123.9 9.1 100 1-111 225-324 (350)
5 PRK15181 Vi polysaccharide bio 99.8 2.3E-20 5E-25 127.3 10.2 104 1-111 222-331 (348)
6 PLN02206 UDP-glucuronate decar 99.8 2.6E-20 5.6E-25 130.5 10.3 100 1-111 317-416 (442)
7 PRK10675 UDP-galactose-4-epime 99.8 5.1E-20 1.1E-24 124.7 11.2 109 2-111 215-323 (338)
8 TIGR01472 gmd GDP-mannose 4,6- 99.8 2E-20 4.2E-25 127.2 9.0 94 13-111 219-333 (343)
9 PLN02653 GDP-mannose 4,6-dehyd 99.8 2.5E-20 5.5E-25 126.5 8.7 94 13-111 225-322 (340)
10 PLN02240 UDP-glucose 4-epimera 99.8 8.8E-20 1.9E-24 124.1 11.4 107 4-111 224-332 (352)
11 PRK10217 dTDP-glucose 4,6-dehy 99.8 4.1E-19 8.9E-24 121.1 9.7 100 2-111 214-325 (355)
12 KOG0747|consensus 99.8 9.9E-19 2.2E-23 114.4 8.2 100 1-111 210-316 (331)
13 TIGR02197 heptose_epim ADP-L-g 99.8 2.6E-18 5.7E-23 115.1 10.5 97 10-111 206-306 (314)
14 TIGR01179 galE UDP-glucose-4-e 99.8 4.3E-18 9.3E-23 114.3 11.2 108 3-111 211-319 (328)
15 PRK10084 dTDP-glucose 4,6 dehy 99.8 2.2E-18 4.7E-23 117.4 9.7 100 2-111 221-328 (352)
16 PLN02695 GDP-D-mannose-3',5'-e 99.8 2.7E-18 5.9E-23 118.1 10.0 99 1-111 225-323 (370)
17 PLN02427 UDP-apiose/xylose syn 99.8 3.9E-18 8.5E-23 117.7 9.5 103 1-111 246-362 (386)
18 PLN00016 RNA-binding protein; 99.8 8.6E-18 1.9E-22 115.8 9.6 96 13-111 239-344 (378)
19 PLN02725 GDP-4-keto-6-deoxyman 99.7 1.1E-17 2.3E-22 111.8 9.5 94 13-111 198-291 (306)
20 TIGR01181 dTDP_gluc_dehyt dTDP 99.7 1.4E-17 3.1E-22 111.4 9.8 100 2-111 204-304 (317)
21 PRK11908 NAD-dependent epimera 99.7 1.2E-17 2.5E-22 113.8 9.4 98 13-111 216-329 (347)
22 PRK08125 bifunctional UDP-gluc 99.7 1.5E-17 3.3E-22 121.5 9.7 98 13-111 530-643 (660)
23 KOG1371|consensus 99.7 1.1E-17 2.5E-22 111.2 7.9 109 2-111 218-326 (343)
24 TIGR02622 CDP_4_6_dhtase CDP-g 99.7 3.3E-17 7.1E-22 111.7 9.4 101 10-111 215-322 (349)
25 PLN02572 UDP-sulfoquinovose sy 99.7 4.6E-17 9.9E-22 114.3 10.0 98 2-110 299-406 (442)
26 PLN02260 probable rhamnose bio 99.7 4.5E-17 9.8E-22 119.1 10.2 100 1-111 212-313 (668)
27 PRK11150 rfaD ADP-L-glycero-D- 99.7 4.2E-16 9E-21 104.6 9.5 92 13-111 204-300 (308)
28 KOG1431|consensus 99.6 1.6E-15 3.6E-20 97.0 8.5 99 1-110 198-299 (315)
29 PLN02214 cinnamoyl-CoA reducta 99.6 3.2E-15 7E-20 101.9 7.9 91 14-111 219-310 (342)
30 PLN02989 cinnamyl-alcohol dehy 99.6 1.3E-14 2.7E-19 98.1 8.0 90 15-111 222-313 (325)
31 TIGR01214 rmlD dTDP-4-dehydror 99.6 2.6E-14 5.6E-19 94.9 8.5 93 15-111 178-281 (287)
32 COG0451 WcaG Nucleoside-diphos 99.6 6E-14 1.3E-18 93.9 10.2 93 13-110 205-301 (314)
33 PLN02686 cinnamoyl-CoA reducta 99.6 1.1E-14 2.5E-19 100.1 6.7 90 17-108 274-364 (367)
34 PRK05865 hypothetical protein; 99.5 3.8E-14 8.2E-19 105.5 8.4 96 13-111 150-250 (854)
35 PRK09987 dTDP-4-dehydrorhamnos 99.5 3.4E-14 7.4E-19 95.3 7.3 100 1-111 175-287 (299)
36 TIGR01777 yfcH conserved hypot 99.5 2.1E-14 4.6E-19 95.2 6.1 93 12-110 189-292 (292)
37 PLN02650 dihydroflavonol-4-red 99.5 6.6E-14 1.4E-18 95.6 8.1 89 16-111 224-313 (351)
38 PLN02662 cinnamyl-alcohol dehy 99.5 1.1E-13 2.3E-18 93.3 7.9 91 14-111 219-309 (322)
39 COG1089 Gmd GDP-D-mannose dehy 99.5 1.1E-13 2.4E-18 91.1 6.8 97 9-110 214-331 (345)
40 PLN02986 cinnamyl-alcohol dehy 99.5 2.5E-13 5.5E-18 91.7 7.8 89 14-111 220-310 (322)
41 TIGR03589 PseB UDP-N-acetylglu 99.5 2.9E-13 6.2E-18 91.8 7.5 93 9-110 190-283 (324)
42 PLN02896 cinnamyl-alcohol dehy 99.4 5E-13 1.1E-17 91.4 8.0 88 17-111 245-333 (353)
43 PLN00198 anthocyanidin reducta 99.4 4.8E-13 1E-17 90.9 7.5 87 17-111 237-324 (338)
44 COG1090 Predicted nucleoside-d 99.4 7.7E-13 1.7E-17 86.8 5.1 94 11-110 186-290 (297)
45 CHL00194 ycf39 Ycf39; Provisio 99.4 1.9E-12 4.1E-17 87.5 7.2 95 13-110 169-292 (317)
46 TIGR03466 HpnA hopanoid-associ 99.3 3.6E-12 7.7E-17 85.8 6.5 90 16-111 200-316 (328)
47 PF04321 RmlD_sub_bind: RmlD s 99.3 1.1E-11 2.4E-16 82.9 7.0 95 15-110 178-278 (286)
48 KOG1372|consensus 99.2 4.8E-11 1E-15 77.8 6.2 97 9-110 243-359 (376)
49 PF13950 Epimerase_Csub: UDP-g 99.2 1.7E-11 3.6E-16 64.2 2.7 49 63-111 1-49 (62)
50 PLN02778 3,5-epimerase/4-reduc 99.0 1.9E-09 4.1E-14 72.6 7.6 78 18-100 192-275 (298)
51 KOG3019|consensus 99.0 1.1E-09 2.3E-14 70.7 5.9 94 11-110 205-310 (315)
52 TIGR03649 ergot_EASG ergot alk 99.0 1.1E-09 2.4E-14 72.8 6.3 63 13-78 161-223 (285)
53 COG1091 RfbD dTDP-4-dehydrorha 98.9 1E-08 2.2E-13 68.2 9.0 91 15-110 177-273 (281)
54 KOG1502|consensus 98.9 6.8E-09 1.5E-13 70.2 8.0 87 18-110 226-313 (327)
55 PLN02657 3,8-divinyl protochlo 98.9 5.7E-09 1.2E-13 72.6 7.7 73 2-83 237-311 (390)
56 PF01073 3Beta_HSD: 3-beta hyd 98.9 8E-09 1.7E-13 69.0 7.4 61 13-74 208-274 (280)
57 PRK07201 short chain dehydroge 98.9 6.7E-09 1.5E-13 76.1 7.4 57 13-72 215-271 (657)
58 PLN02996 fatty acyl-CoA reduct 98.9 4.9E-09 1.1E-13 74.9 6.3 59 13-72 300-361 (491)
59 PLN02583 cinnamoyl-CoA reducta 98.9 1.2E-08 2.6E-13 68.5 7.6 80 17-102 216-296 (297)
60 PRK12320 hypothetical protein; 98.8 1.7E-08 3.7E-13 74.5 7.2 81 18-108 158-238 (699)
61 KOG1430|consensus 98.8 3.6E-08 7.8E-13 67.7 7.1 97 13-110 210-338 (361)
62 PF01370 Epimerase: NAD depend 98.7 2.1E-08 4.6E-13 64.6 5.3 41 1-50 196-236 (236)
63 PLN02260 probable rhamnose bio 98.5 5.4E-07 1.2E-11 66.6 6.4 85 18-110 563-654 (668)
64 TIGR01746 Thioester-redct thio 98.2 3.7E-06 8E-11 57.3 5.9 55 17-73 229-283 (367)
65 PF05368 NmrA: NmrA-like famil 97.8 6.6E-05 1.4E-09 48.6 6.0 60 13-74 171-231 (233)
66 KOG2865|consensus 97.7 8.5E-05 1.8E-09 50.0 5.1 61 1-70 234-295 (391)
67 PLN02503 fatty acyl-CoA reduct 97.6 0.00032 7E-09 51.7 6.7 58 13-71 414-475 (605)
68 KOG2774|consensus 97.5 0.00035 7.5E-09 46.0 5.3 90 15-107 248-340 (366)
69 TIGR03443 alpha_am_amid L-amin 97.4 0.00045 9.9E-09 55.0 6.0 57 13-71 1209-1265(1389)
70 COG1086 Predicted nucleoside-d 96.7 0.018 4E-07 42.2 8.1 74 6-83 437-514 (588)
71 PRK07074 short chain dehydroge 96.5 0.0035 7.7E-08 40.9 3.6 50 16-66 205-254 (257)
72 PF02719 Polysacc_synt_2: Poly 96.5 0.0047 1E-07 41.8 4.1 75 7-85 190-270 (293)
73 TIGR01963 PHB_DH 3-hydroxybuty 96.0 0.007 1.5E-07 39.3 2.7 41 13-54 213-253 (255)
74 PRK13394 3-hydroxybutyrate deh 95.8 0.0087 1.9E-07 39.1 2.6 40 13-53 220-259 (262)
75 COG0702 Predicted nucleoside-d 95.6 0.079 1.7E-06 34.7 6.6 56 17-75 170-225 (275)
76 PRK05875 short chain dehydroge 94.9 0.059 1.3E-06 35.6 4.4 51 18-69 217-271 (276)
77 PRK06482 short chain dehydroge 94.8 0.036 7.9E-07 36.6 3.2 45 21-69 219-263 (276)
78 PRK06077 fabG 3-ketoacyl-(acyl 94.3 0.052 1.1E-06 35.2 3.0 35 17-54 212-246 (252)
79 PRK07067 sorbitol dehydrogenas 94.3 0.048 1.1E-06 35.6 2.8 43 13-56 215-257 (257)
80 PRK12429 3-hydroxybutyrate deh 94.2 0.048 1E-06 35.4 2.7 38 14-52 217-254 (258)
81 PRK06194 hypothetical protein; 94.0 0.026 5.6E-07 37.5 1.1 65 13-96 214-279 (287)
82 PRK07806 short chain dehydroge 93.7 0.08 1.7E-06 34.3 3.0 34 19-55 212-245 (248)
83 KOG1221|consensus 92.8 0.73 1.6E-05 33.5 6.8 56 13-69 272-332 (467)
84 PLN00141 Tic62-NAD(P)-related 92.6 0.38 8.3E-06 31.5 4.9 45 19-66 203-250 (251)
85 PRK08324 short chain dehydroge 91.2 0.21 4.5E-06 37.8 2.8 42 13-55 636-677 (681)
86 PRK12384 sorbitol-6-phosphate 90.9 0.23 5E-06 32.4 2.5 40 14-54 218-257 (259)
87 PRK07775 short chain dehydroge 90.7 0.26 5.7E-06 32.6 2.7 31 16-50 219-249 (274)
88 PRK12935 acetoacetyl-CoA reduc 90.6 0.32 6.9E-06 31.5 2.9 37 15-53 209-245 (247)
89 PRK12825 fabG 3-ketoacyl-(acyl 90.1 0.37 7.9E-06 30.9 2.9 37 18-55 212-248 (249)
90 PRK08263 short chain dehydroge 89.6 0.39 8.5E-06 31.8 2.8 46 18-67 214-261 (275)
91 PRK12829 short chain dehydroge 89.1 0.48 1E-05 30.9 2.9 36 18-54 227-262 (264)
92 PRK09135 pteridine reductase; 88.7 0.48 1E-05 30.5 2.7 35 20-56 214-248 (249)
93 PRK06914 short chain dehydroge 88.5 0.34 7.4E-06 32.0 1.9 37 18-58 224-260 (280)
94 PRK12826 3-ketoacyl-(acyl-carr 86.3 0.96 2.1E-05 29.1 3.0 35 18-53 213-247 (251)
95 PRK05876 short chain dehydroge 85.5 2.5 5.4E-05 28.1 4.8 47 13-68 216-262 (275)
96 PRK12828 short chain dehydroge 85.3 1 2.2E-05 28.8 2.7 35 18-53 202-236 (239)
97 PRK12746 short chain dehydroge 84.0 1.5 3.2E-05 28.5 3.1 35 17-52 217-251 (254)
98 PRK07060 short chain dehydroge 83.3 1.4 3.1E-05 28.3 2.8 35 17-52 207-241 (245)
99 PRK07774 short chain dehydroge 83.2 1.7 3.6E-05 28.1 3.1 35 20-55 214-248 (250)
100 PRK05653 fabG 3-ketoacyl-(acyl 81.8 1.7 3.7E-05 27.8 2.8 35 18-53 210-244 (246)
101 PRK09134 short chain dehydroge 81.4 1.6 3.5E-05 28.5 2.5 36 20-58 214-249 (258)
102 PRK12745 3-ketoacyl-(acyl-carr 78.1 3 6.6E-05 27.0 3.0 37 18-55 217-253 (256)
103 PRK12939 short chain dehydroge 77.9 3.3 7.2E-05 26.6 3.2 37 15-52 210-246 (250)
104 PRK07523 gluconate 5-dehydroge 77.7 3.1 6.7E-05 27.1 3.0 39 17-56 216-254 (255)
105 PRK08219 short chain dehydroge 77.5 2 4.2E-05 27.3 2.0 30 17-50 192-221 (227)
106 PRK07231 fabG 3-ketoacyl-(acyl 76.1 3.8 8.3E-05 26.4 3.1 36 17-53 213-248 (251)
107 PRK06701 short chain dehydroge 72.8 4.6 0.0001 27.1 2.9 38 16-54 250-287 (290)
108 PRK08063 enoyl-(acyl carrier p 72.0 4.6 9.9E-05 26.1 2.7 35 19-54 213-247 (250)
109 TIGR01830 3oxo_ACP_reduc 3-oxo 71.9 5.3 0.00011 25.5 2.9 33 19-52 205-237 (239)
110 PRK05557 fabG 3-ketoacyl-(acyl 71.5 5.9 0.00013 25.3 3.1 34 18-52 211-244 (248)
111 PRK08217 fabG 3-ketoacyl-(acyl 67.2 8.5 0.00019 24.7 3.2 35 16-53 217-251 (253)
112 PRK07041 short chain dehydroge 66.9 7.8 0.00017 24.6 2.9 32 20-54 197-228 (230)
113 PRK06128 oxidoreductase; Provi 66.2 8 0.00017 26.0 3.0 39 16-55 261-299 (300)
114 PF13344 Hydrolase_6: Haloacid 66.1 22 0.00047 20.0 5.5 53 13-72 6-58 (101)
115 PF10678 DUF2492: Protein of u 63.3 17 0.00036 19.9 3.3 22 45-66 37-58 (78)
116 PRK12823 benD 1,6-dihydroxycyc 62.7 9.3 0.0002 24.8 2.7 33 20-53 226-258 (260)
117 KOG4388|consensus 61.3 12 0.00026 28.6 3.2 28 10-37 119-146 (880)
118 PRK06138 short chain dehydroge 60.8 11 0.00025 24.2 2.9 33 19-52 216-248 (252)
119 PLN02253 xanthoxin dehydrogena 60.7 7.9 0.00017 25.6 2.1 36 20-56 237-272 (280)
120 PRK06123 short chain dehydroge 60.3 12 0.00027 24.0 3.0 31 21-52 217-247 (248)
121 PF08338 DUF1731: Domain of un 60.3 5.7 0.00012 19.4 1.1 23 87-110 21-44 (48)
122 PRK08220 2,3-dihydroxybenzoate 58.8 16 0.00035 23.5 3.4 36 16-52 212-247 (252)
123 PRK07890 short chain dehydroge 53.9 22 0.00048 22.9 3.4 34 18-52 221-254 (258)
124 PRK09186 flagellin modificatio 52.8 11 0.00024 24.4 1.8 34 18-52 220-253 (256)
125 PRK06841 short chain dehydroge 52.5 20 0.00043 23.2 3.0 36 17-53 217-252 (255)
126 COG1809 (2R)-phospho-3-sulfola 51.6 55 0.0012 21.8 4.7 56 10-70 75-131 (258)
127 PF11112 PyocinActivator: Pyoc 51.2 24 0.00052 19.1 2.7 21 13-33 51-71 (76)
128 TIGR02632 RhaD_aldol-ADH rhamn 49.9 21 0.00046 27.3 3.1 38 16-54 634-671 (676)
129 PRK08017 oxidoreductase; Provi 49.7 9.1 0.0002 24.7 1.0 23 15-37 201-223 (256)
130 PF04312 DUF460: Protein of un 49.6 55 0.0012 20.0 4.2 31 43-74 51-81 (138)
131 PRK12937 short chain dehydroge 48.1 23 0.00049 22.7 2.7 33 19-52 211-243 (245)
132 PF12327 FtsZ_C: FtsZ family, 47.7 50 0.0011 18.5 4.4 51 25-76 15-73 (95)
133 COG0019 LysA Diaminopimelate d 46.0 47 0.001 23.9 4.1 70 9-79 194-277 (394)
134 TIGR03206 benzo_BadH 2-hydroxy 45.5 30 0.00065 22.2 3.0 33 19-52 215-247 (250)
135 PRK12824 acetoacetyl-CoA reduc 44.8 29 0.00063 22.1 2.8 36 18-54 208-243 (245)
136 PRK06181 short chain dehydroge 44.2 20 0.00043 23.3 2.0 21 17-37 206-226 (263)
137 PRK12744 short chain dehydroge 43.8 29 0.00064 22.5 2.8 34 19-54 222-255 (257)
138 PRK08628 short chain dehydroge 42.0 41 0.00089 21.7 3.2 39 19-59 217-255 (258)
139 PRK12827 short chain dehydroge 41.9 36 0.00079 21.7 2.9 32 20-52 216-247 (249)
140 PRK06198 short chain dehydroge 41.5 40 0.00087 21.8 3.1 34 18-52 220-253 (260)
141 PF01320 Colicin_Pyocin: Colic 40.5 41 0.00088 18.7 2.5 43 22-67 32-74 (85)
142 PF14097 SpoVAE: Stage V sporu 40.1 94 0.002 19.8 4.3 46 27-77 13-60 (180)
143 PRK06180 short chain dehydroge 39.7 41 0.00089 22.2 3.0 19 19-37 220-238 (277)
144 PRK12936 3-ketoacyl-(acyl-carr 38.9 41 0.0009 21.4 2.9 34 19-53 209-242 (245)
145 PF00571 CBS: CBS domain CBS d 37.8 50 0.0011 15.7 3.4 19 13-31 38-56 (57)
146 PRK06523 short chain dehydroge 37.7 44 0.00094 21.7 2.8 35 20-55 224-258 (260)
147 PF14598 PAS_11: PAS domain; P 36.9 42 0.00091 19.2 2.4 24 14-37 35-62 (111)
148 TIGR01832 kduD 2-deoxy-D-gluco 36.3 49 0.0011 21.2 2.9 20 18-37 211-230 (248)
149 KOG1342|consensus 36.3 48 0.001 23.9 2.9 19 19-37 147-165 (425)
150 cd06396 PB1_NBR1 The PB1 domai 36.3 78 0.0017 17.4 3.6 27 45-71 12-38 (81)
151 PRK06113 7-alpha-hydroxysteroi 35.2 47 0.001 21.5 2.7 35 19-54 217-251 (255)
152 TIGR03853 matur_matur probable 35.0 80 0.0017 17.2 5.1 22 45-66 35-56 (77)
153 PRK09730 putative NAD(P)-bindi 34.3 55 0.0012 20.8 2.9 31 21-52 216-246 (247)
154 COG0647 NagD Predicted sugar p 34.0 1.5E+02 0.0033 20.2 5.3 55 13-73 16-70 (269)
155 PF05165 GGDN: GGDN family; I 33.8 82 0.0018 21.2 3.6 55 17-76 149-212 (246)
156 cd06405 PB1_Mekk2_3 The PB1 do 33.7 85 0.0018 17.1 4.5 61 44-104 9-69 (79)
157 KOG2889|consensus 32.9 35 0.00077 21.8 1.7 22 10-31 131-152 (204)
158 PRK08285 cobH precorrin-8X met 32.4 1.2E+02 0.0027 19.8 4.1 49 14-68 91-151 (208)
159 PRK12747 short chain dehydroge 32.2 59 0.0013 20.9 2.8 34 18-52 216-249 (252)
160 COG5014 Predicted Fe-S oxidore 31.3 1.5E+02 0.0032 19.2 4.8 49 15-68 68-116 (228)
161 PRK08642 fabG 3-ketoacyl-(acyl 31.0 65 0.0014 20.6 2.8 34 18-52 216-249 (253)
162 PF13580 SIS_2: SIS domain; PD 30.4 1.1E+02 0.0024 18.1 3.6 26 23-54 21-46 (138)
163 PRK05565 fabG 3-ketoacyl-(acyl 30.4 65 0.0014 20.5 2.8 34 18-52 211-244 (247)
164 PF05418 Apo-VLDL-II: Apovitel 30.2 46 0.00099 18.0 1.6 20 17-36 8-27 (82)
165 PHA01810 hypothetical protein 30.0 41 0.00088 18.2 1.4 17 94-110 22-38 (100)
166 PRK06124 gluconate 5-dehydroge 29.7 73 0.0016 20.5 2.9 34 18-52 218-251 (256)
167 TIGR02924 ICDH_alpha isocitrat 29.5 1.8E+02 0.0038 21.7 4.9 52 19-72 286-341 (473)
168 PF15007 CEP44: Centrosomal sp 29.2 43 0.00094 20.2 1.6 18 91-108 74-91 (131)
169 PF03555 Flu_C_NS2: Influenza 29.1 43 0.00094 16.2 1.3 19 92-111 38-56 (57)
170 PF03802 CitX: Apo-citrate lya 28.7 49 0.0011 20.8 1.9 26 43-68 80-105 (170)
171 COG4519 Uncharacterized protei 28.7 47 0.001 18.3 1.5 20 90-110 24-43 (95)
172 PF08827 DUF1805: Domain of un 28.7 54 0.0012 16.9 1.7 20 91-111 38-57 (59)
173 cd01255 PH_TIAM TIAM Pleckstri 28.6 78 0.0017 19.6 2.6 46 12-69 110-155 (160)
174 PRK07577 short chain dehydroge 28.5 89 0.0019 19.7 3.1 31 21-52 201-231 (234)
175 PF08799 PRP4: pre-mRNA proces 28.5 12 0.00027 16.4 -0.6 6 1-6 11-16 (30)
176 TIGR03124 ctirate_citX holo-AC 28.3 54 0.0012 20.5 2.0 26 43-68 78-103 (165)
177 COG5394 Uncharacterized protei 28.2 43 0.00093 21.1 1.5 25 43-67 17-41 (193)
178 PF15412 Nse4-Nse3_bdg: Bindin 28.1 82 0.0018 15.8 2.3 25 46-71 18-42 (56)
179 PRK06182 short chain dehydroge 28.1 73 0.0016 20.9 2.7 30 18-51 218-247 (273)
180 PLN02455 fructose-bisphosphate 28.0 1.2E+02 0.0027 21.6 3.8 39 14-54 232-270 (358)
181 PRK07578 short chain dehydroge 28.0 52 0.0011 20.4 2.0 28 19-50 172-199 (199)
182 PF00681 Plectin: Plectin repe 27.3 81 0.0017 14.8 2.4 20 43-62 10-29 (45)
183 PRK06463 fabG 3-ketoacyl-(acyl 27.2 95 0.0021 20.1 3.1 35 18-53 213-247 (255)
184 PF02110 HK: Hydroxyethylthiaz 26.7 66 0.0014 21.6 2.3 59 19-78 16-86 (246)
185 cd01251 PH_centaurin_alpha Cen 26.6 1.1E+02 0.0024 17.2 2.9 28 43-70 75-102 (103)
186 PF15047 DUF4533: Protein of u 26.6 1.9E+02 0.0042 19.2 4.3 49 20-69 13-61 (225)
187 TIGR02415 23BDH acetoin reduct 26.1 85 0.0018 20.1 2.7 19 19-37 218-236 (254)
188 COG5252 Uncharacterized conser 25.7 2.2E+02 0.0047 19.3 4.4 52 17-72 134-211 (299)
189 PF03808 Glyco_tran_WecB: Glyc 25.5 1.7E+02 0.0038 18.1 4.3 45 19-69 29-73 (172)
190 smart00666 PB1 PB1 domain. Pho 24.8 1.2E+02 0.0026 15.9 3.5 23 49-71 15-37 (81)
191 PF00602 Flu_PB1: Influenza RN 24.7 25 0.00053 27.2 0.0 57 9-71 122-178 (740)
192 PF06968 BATS: Biotin and Thia 24.7 1.1E+02 0.0024 16.9 2.7 46 18-69 16-61 (93)
193 PF12757 DUF3812: Protein of u 24.6 1.3E+02 0.0028 17.9 3.1 27 43-69 57-83 (126)
194 PF02570 CbiC: Precorrin-8X me 24.5 1.5E+02 0.0033 19.2 3.6 48 14-67 83-142 (198)
195 cd06411 PB1_p51 The PB1 domain 24.4 1.3E+02 0.0029 16.4 3.7 35 46-80 8-42 (78)
196 PF02082 Rrf2: Transcriptional 24.3 1.3E+02 0.0027 16.1 3.0 20 45-64 63-83 (83)
197 KOG0625|consensus 24.3 1.8E+02 0.0039 21.6 4.1 47 19-68 32-78 (558)
198 PRK05953 precorrin-8X methylmu 24.3 1.5E+02 0.0031 19.5 3.4 48 14-67 87-142 (208)
199 PF04468 PSP1: PSP1 C-terminal 24.1 1.4E+02 0.003 16.4 3.1 26 46-71 57-82 (88)
200 cd00948 FBP_aldolase_I_a Fruct 23.5 1.7E+02 0.0038 20.6 3.8 40 14-54 224-263 (330)
201 PRK05650 short chain dehydroge 23.2 1.7E+02 0.0036 19.2 3.7 19 19-37 208-226 (270)
202 PF11784 DUF3320: Protein of u 22.5 86 0.0019 15.4 1.7 19 53-71 25-43 (52)
203 PTZ00019 fructose-bisphosphate 22.4 1.9E+02 0.0041 20.7 3.8 35 19-54 234-268 (355)
204 KOG4288|consensus 22.2 62 0.0013 21.9 1.5 40 15-66 241-280 (283)
205 cd01459 vWA_copine_like VWA Co 21.5 2.7E+02 0.0058 18.8 5.5 32 47-78 161-192 (254)
206 PF04244 DPRP: Deoxyribodipyri 21.4 1.7E+02 0.0038 19.2 3.4 55 19-78 66-126 (224)
207 TIGR01456 CECR5 HAD-superfamil 21.2 2.9E+02 0.0063 19.0 5.5 59 13-73 8-66 (321)
208 PRK09355 hydroxyethylthiazole 21.0 2.5E+02 0.0055 18.7 4.2 19 19-37 21-39 (263)
209 TIGR00694 thiM hydroxyethylthi 21.0 2.1E+02 0.0046 18.9 3.8 19 19-37 16-34 (249)
210 PRK05717 oxidoreductase; Valid 20.9 1.1E+02 0.0023 19.8 2.4 33 19-52 214-246 (255)
211 TIGR01460 HAD-SF-IIA Haloacid 20.7 2.5E+02 0.0055 18.2 5.2 43 23-71 16-58 (236)
212 PRK10886 DnaA initiator-associ 20.7 1.3E+02 0.0029 19.3 2.8 26 23-54 27-52 (196)
213 PF00036 EF-hand_1: EF hand; 20.6 92 0.002 13.1 1.9 17 50-66 12-28 (29)
214 PRK12743 oxidoreductase; Provi 20.1 1.6E+02 0.0035 19.0 3.2 32 20-52 211-242 (256)
215 PRK06947 glucose-1-dehydrogena 20.0 1.4E+02 0.0031 19.0 2.9 30 20-50 216-245 (248)
216 PRK13938 phosphoheptose isomer 20.0 1.4E+02 0.003 19.2 2.7 26 23-54 31-56 (196)
No 1
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=4.9e-26 Score=149.55 Aligned_cols=109 Identities=42% Similarity=0.724 Sum_probs=101.6
Q ss_pred eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC
Q psy16546 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE 81 (111)
Q Consensus 2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~ 81 (111)
+.|||.++.+.||+..||||||.|+|+|+++|++...+.. ...+||+++|..+|..|+++.+.+..|++.+.+..|.|+
T Consensus 206 l~ifG~DY~T~DGT~iRDYIHV~DLA~aH~~Al~~L~~~g-~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~~RR~ 284 (329)
T COG1087 206 LFIFGDDYDTKDGTCIRDYIHVDDLADAHVLALKYLKEGG-SNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPRRA 284 (329)
T ss_pred eEEeCCCCCCCCCCeeeeeeehhHHHHHHHHHHHHHHhCC-ceeEEEccCCCceeHHHHHHHHHHHhCCcCceeeCCCCC
Confidence 6899999999999999999999999999999999875433 447999999999999999999999999999999999999
Q ss_pred CccchhccCHHHHHHhhCCCccc-chHhhhC
Q psy16546 82 GDIVSMYANTDLAQRELGWSARC-TVEKMCK 111 (111)
Q Consensus 82 ~~~~~~~~d~~k~~~~lg~~p~~-~~~~~l~ 111 (111)
+++...+.|++|+++.|||+|++ ++++.++
T Consensus 285 GDpa~l~Ad~~kA~~~Lgw~p~~~~L~~ii~ 315 (329)
T COG1087 285 GDPAILVADSSKARQILGWQPTYDDLEDIIK 315 (329)
T ss_pred CCCceeEeCHHHHHHHhCCCcccCCHHHHHH
Confidence 99999999999999999999999 8988763
No 2
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=7.6e-23 Score=134.33 Aligned_cols=101 Identities=29% Similarity=0.417 Sum_probs=94.9
Q ss_pred CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCcc-----ce
Q psy16546 1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP-----YI 75 (111)
Q Consensus 1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~-----~~ 75 (111)
|++|+| +|.|.|||+||+|-|+|+..++.+. . .|++|||+++...+-.++++.|.+.++...+ +.
T Consensus 205 ~lpvYG------dG~~iRDWl~VeDh~~ai~~Vl~kg---~-~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~ 274 (340)
T COG1088 205 PLPVYG------DGLQIRDWLYVEDHCRAIDLVLTKG---K-IGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLIT 274 (340)
T ss_pred CCceec------CCcceeeeEEeHhHHHHHHHHHhcC---c-CCceEEeCCCccchHHHHHHHHHHHhCccccchhhheE
Confidence 689999 9999999999999999999999985 4 7999999999999999999999999998777 78
Q ss_pred EccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 76 VEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 76 ~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
+...+|+.-.++.+|.+|+.++|||.|.+++++||+
T Consensus 275 ~V~DRpGHD~RYaid~~Ki~~eLgW~P~~~fe~Glr 310 (340)
T COG1088 275 FVEDRPGHDRRYAIDASKIKRELGWRPQETFETGLR 310 (340)
T ss_pred eccCCCCCccceeechHHHhhhcCCCcCCCHHHHHH
Confidence 899999998999999999999999999999999985
No 3
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=99.85 E-value=1.2e-20 Score=132.08 Aligned_cols=100 Identities=21% Similarity=0.316 Sum_probs=88.2
Q ss_pred CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC
Q psy16546 1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR 80 (111)
Q Consensus 1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~ 80 (111)
++.++| +|++.|+|+||+|+|+++..++++. .+++||+++++.+|+.|+++.+++.++.+..+.+.|.+
T Consensus 318 ~i~v~g------~g~~~rdfi~V~Dva~ai~~~~~~~-----~~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~~ 386 (436)
T PLN02166 318 PMTVYG------DGKQTRSFQYVSDLVDGLVALMEGE-----HVGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPNT 386 (436)
T ss_pred CcEEeC------CCCeEEeeEEHHHHHHHHHHHHhcC-----CCceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCCC
Confidence 356677 9999999999999999999999864 46799999999999999999999999988777777776
Q ss_pred CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 81 EGDIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 81 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
..+.....+|++|++++|||+|+++++++|+
T Consensus 387 ~~~~~~~~~d~~Ka~~~LGw~P~~sl~egl~ 417 (436)
T PLN02166 387 ADDPHKRKPDISKAKELLNWEPKISLREGLP 417 (436)
T ss_pred CCCccccccCHHHHHHHcCCCCCCCHHHHHH
Confidence 6666677889999999999999999999874
No 4
>KOG1429|consensus
Probab=99.85 E-value=9.8e-21 Score=123.85 Aligned_cols=100 Identities=20% Similarity=0.286 Sum_probs=93.7
Q ss_pred CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC
Q psy16546 1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR 80 (111)
Q Consensus 1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~ 80 (111)
|++++| +|.|.|+|+||.|++++++++++++ ..+-+|||+++..|+.|+++++.+..+....+++.+..
T Consensus 225 pltv~g------~G~qtRSF~yvsD~Vegll~Lm~s~-----~~~pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~~~ 293 (350)
T KOG1429|consen 225 PLTVYG------DGKQTRSFQYVSDLVEGLLRLMESD-----YRGPVNIGNPGEFTMLELAEMVKELIGPVSEIEFVENG 293 (350)
T ss_pred CeEEEc------CCcceEEEEeHHHHHHHHHHHhcCC-----CcCCcccCCccceeHHHHHHHHHHHcCCCcceeecCCC
Confidence 789999 9999999999999999999999987 45669999999999999999999999888888888888
Q ss_pred CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 81 EGDIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 81 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
+.++.....|++|+++.|||.|..+|+++|.
T Consensus 294 ~Ddp~kR~pDit~ake~LgW~Pkv~L~egL~ 324 (350)
T KOG1429|consen 294 PDDPRKRKPDITKAKEQLGWEPKVSLREGLP 324 (350)
T ss_pred CCCccccCccHHHHHHHhCCCCCCcHHHhhH
Confidence 8999999999999999999999999999974
No 5
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=99.84 E-value=2.3e-20 Score=127.25 Aligned_cols=104 Identities=20% Similarity=0.229 Sum_probs=83.8
Q ss_pred CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCC------ccc
Q psy16546 1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKP------VPY 74 (111)
Q Consensus 1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~------~~~ 74 (111)
++.++| +|++.|||+||+|+|+++++++....... .+++||+++++.+|++|+++.+.+.++.. ..+
T Consensus 222 ~i~~~g------~g~~~rd~i~v~D~a~a~~~~~~~~~~~~-~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~ 294 (348)
T PRK15181 222 PIYING------DGSTSRDFCYIENVIQANLLSATTNDLAS-KNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEP 294 (348)
T ss_pred CcEEeC------CCCceEeeEEHHHHHHHHHHHHhcccccC-CCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCc
Confidence 356677 99999999999999999998876431123 46899999999999999999999998732 223
Q ss_pred eEccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 75 IVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 75 ~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
...+.++.+...+.+|++|+++.+||+|+++++++|+
T Consensus 295 ~~~~~~~~~~~~~~~d~~k~~~~lGw~P~~sl~egl~ 331 (348)
T PRK15181 295 IYKDFRDGDVKHSQADITKIKTFLSYEPEFDIKEGLK 331 (348)
T ss_pred ccCCCCCCcccccccCHHHHHHHhCCCCCCCHHHHHH
Confidence 3344556666677889999999999999999999974
No 6
>PLN02206 UDP-glucuronate decarboxylase
Probab=99.84 E-value=2.6e-20 Score=130.52 Aligned_cols=100 Identities=21% Similarity=0.345 Sum_probs=87.6
Q ss_pred CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC
Q psy16546 1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR 80 (111)
Q Consensus 1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~ 80 (111)
++.++| +|++.|+|+||+|+|++++.++++. .+++||+++++.+|+.|+++.+++.++.+..+.+.|.+
T Consensus 317 ~i~i~g------~G~~~rdfi~V~Dva~ai~~a~e~~-----~~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~~ 385 (442)
T PLN02206 317 PLTVYG------DGKQTRSFQFVSDLVEGLMRLMEGE-----HVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNT 385 (442)
T ss_pred CcEEeC------CCCEEEeEEeHHHHHHHHHHHHhcC-----CCceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCCC
Confidence 356677 9999999999999999999999864 45799999999999999999999999987777777766
Q ss_pred CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 81 EGDIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 81 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
..+.....+|++|+++++||+|+++++++|+
T Consensus 386 ~~~~~~~~~d~sKa~~~LGw~P~~~l~egl~ 416 (442)
T PLN02206 386 EDDPHKRKPDITKAKELLGWEPKVSLRQGLP 416 (442)
T ss_pred CCCccccccCHHHHHHHcCCCCCCCHHHHHH
Confidence 6666667789999999999999999999873
No 7
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=99.84 E-value=5.1e-20 Score=124.68 Aligned_cols=109 Identities=50% Similarity=0.921 Sum_probs=90.3
Q ss_pred eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC
Q psy16546 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE 81 (111)
Q Consensus 2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~ 81 (111)
+.++|..+..++|++.|+|+|++|+|++++.+++...... .+++||+++++.+|++|+++.+.+.+|.+.++...|.++
T Consensus 215 ~~~~~~~~~~~~g~~~~~~v~v~D~a~~~~~~~~~~~~~~-~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~ 293 (338)
T PRK10675 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVAAMEKLANKP-GVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPRRE 293 (338)
T ss_pred eEEeCCcCCCCCCcEEEeeEEHHHHHHHHHHHHHhhhccC-CCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCCCCC
Confidence 3455544555688999999999999999999998631123 458999999999999999999999999887777777666
Q ss_pred CccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 82 GDIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 82 ~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
.+....++|++|+++.+||+|.++++++++
T Consensus 294 ~~~~~~~~~~~k~~~~lg~~p~~~~~~~~~ 323 (338)
T PRK10675 294 GDLPAYWADASKADRELNWRVTRTLDEMAQ 323 (338)
T ss_pred CchhhhhcCHHHHHHHhCCCCcCcHHHHHH
Confidence 666777889999999999999999999874
No 8
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=99.84 E-value=2e-20 Score=127.24 Aligned_cols=94 Identities=22% Similarity=0.302 Sum_probs=80.2
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccc------------------
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPY------------------ 74 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~------------------ 74 (111)
+|++.|||+||+|+|++++.+++++ .+++||+++++++|++|+++.+.+.+|.+..+
T Consensus 219 ~g~~~rd~i~V~D~a~a~~~~~~~~-----~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 293 (343)
T TIGR01472 219 NLDAKRDWGHAKDYVEAMWLMLQQD-----KPDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVH 293 (343)
T ss_pred CCccccCceeHHHHHHHHHHHHhcC-----CCccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCcee
Confidence 8999999999999999999999875 35789999999999999999999999965421
Q ss_pred -e--EccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 75 -I--VEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 75 -~--~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
. ..+.++.++..+.+|++|++++|||+|+++++++|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~~~l~egi~ 333 (343)
T TIGR01472 294 VEIDPRYFRPTEVDLLLGDATKAKEKLGWKPEVSFEKLVK 333 (343)
T ss_pred EEeCccccCCCccchhcCCHHHHHHhhCCCCCCCHHHHHH
Confidence 1 122356677778889999999999999999999974
No 9
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=99.83 E-value=2.5e-20 Score=126.52 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=80.3
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCC--ccceEc--cCCCCccchhc
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKP--VPYIVE--ARREGDIVSMY 88 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~--~~~~~~--~~~~~~~~~~~ 88 (111)
+|++.|||+||+|+|+|++.++++. .+++||+++++++|++|+++.+.+.+|.+ ...... +.++.+...+.
T Consensus 225 ~g~~~rd~i~v~D~a~a~~~~~~~~-----~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 299 (340)
T PLN02653 225 NLDASRDWGFAGDYVEAMWLMLQQE-----KPDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLK 299 (340)
T ss_pred CCcceecceeHHHHHHHHHHHHhcC-----CCCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcccCCcccccccc
Confidence 8999999999999999999999875 45789999999999999999999999864 222222 23566777778
Q ss_pred cCHHHHHHhhCCCcccchHhhhC
Q psy16546 89 ANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 89 ~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
+|++|+++.|||+|.++++++|+
T Consensus 300 ~d~~k~~~~lgw~p~~~l~~gi~ 322 (340)
T PLN02653 300 GDASKAREVLGWKPKVGFEQLVK 322 (340)
T ss_pred CCHHHHHHHhCCCCCCCHHHHHH
Confidence 89999999999999999999984
No 10
>PLN02240 UDP-glucose 4-epimerase
Probab=99.83 E-value=8.8e-20 Score=124.12 Aligned_cols=107 Identities=54% Similarity=0.975 Sum_probs=89.1
Q ss_pred eeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhh--ccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC
Q psy16546 4 VFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQ--GEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE 81 (111)
Q Consensus 4 ~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~--~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~ 81 (111)
++|......+|.+.|+|+|++|+|++++.++++.. +.. .+++||+++++.+|++|+++.+++.++.+.++...+.++
T Consensus 224 ~~g~~~~~~~g~~~~~~i~v~D~a~a~~~a~~~~~~~~~~-~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~ 302 (352)
T PLN02240 224 VFGNDYPTKDGTGVRDYIHVMDLADGHIAALRKLFTDPDI-GCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPRRP 302 (352)
T ss_pred EeCCCCCCCCCCEEEeeEEHHHHHHHHHHHHhhhhhccCC-CCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCCCCC
Confidence 44433334588999999999999999999987531 123 468999999999999999999999999888887777777
Q ss_pred CccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 82 GDIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 82 ~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
.+...+++|++|++++|||+|.++++++|+
T Consensus 303 ~~~~~~~~d~~k~~~~lg~~p~~~l~~~l~ 332 (352)
T PLN02240 303 GDAEEVYASTEKAEKELGWKAKYGIDEMCR 332 (352)
T ss_pred CChhhhhcCHHHHHHHhCCCCCCCHHHHHH
Confidence 777777789999999999999999999874
No 11
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=99.80 E-value=4.1e-19 Score=121.09 Aligned_cols=100 Identities=25% Similarity=0.357 Sum_probs=81.8
Q ss_pred eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCcc--------
Q psy16546 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP-------- 73 (111)
Q Consensus 2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~-------- 73 (111)
+.++| +|++.|+|+||+|+|+++..++++. . .+++||+++++.+|++++++.+.+.++...+
T Consensus 214 ~~~~g------~g~~~~~~i~v~D~a~a~~~~~~~~---~-~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~ 283 (355)
T PRK10217 214 LPVYG------NGQQIRDWLYVEDHARALYCVATTG---K-VGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAH 283 (355)
T ss_pred ceEeC------CCCeeeCcCcHHHHHHHHHHHHhcC---C-CCCeEEeCCCCcccHHHHHHHHHHHhccccccccccccc
Confidence 45667 9999999999999999999999874 3 4689999999999999999999999875321
Q ss_pred ----ceEccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 74 ----YIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 74 ----~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
....+.++.....+.+|++|+++.|||+|.++++++++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~l~e~l~ 325 (355)
T PRK10217 284 YRDLITFVADRPGHDLRYAIDASKIARELGWLPQETFESGMR 325 (355)
T ss_pred ccccceecCCCCCCCcccccCHHHHHHhcCCCCcCcHHHHHH
Confidence 12233344455567889999999999999999999874
No 12
>KOG0747|consensus
Probab=99.78 E-value=9.9e-19 Score=114.39 Aligned_cols=100 Identities=22% Similarity=0.326 Sum_probs=86.2
Q ss_pred CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCC-------cc
Q psy16546 1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKP-------VP 73 (111)
Q Consensus 1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~-------~~ 73 (111)
+.++.| +|.+.|+|+||+|+++|+..++++. . .|++|||++..+++..++++.|.+.+... +.
T Consensus 210 ~~~i~g------~g~~~rs~l~veD~~ea~~~v~~Kg---~-~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~ 279 (331)
T KOG0747|consen 210 EYPIHG------DGLQTRSYLYVEDVSEAFKAVLEKG---E-LGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPF 279 (331)
T ss_pred Ccceec------CcccceeeEeHHHHHHHHHHHHhcC---C-ccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCc
Confidence 467888 9999999999999999999999985 3 69999999999999999999999888642 33
Q ss_pred ceEccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 74 YIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 74 ~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
+.+.+.++..-.++.++++|++ .|||+|.+++++||+
T Consensus 280 ~~~v~dRp~nd~Ry~~~~eKik-~LGw~~~~p~~eGLr 316 (331)
T KOG0747|consen 280 IFFVEDRPYNDLRYFLDDEKIK-KLGWRPTTPWEEGLR 316 (331)
T ss_pred ceecCCCCcccccccccHHHHH-hcCCcccCcHHHHHH
Confidence 4456677777677889999999 699999999999984
No 13
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=99.78 E-value=2.6e-18 Score=115.13 Aligned_cols=97 Identities=23% Similarity=0.198 Sum_probs=79.9
Q ss_pred CCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCC----ccc
Q psy16546 10 GTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREG----DIV 85 (111)
Q Consensus 10 ~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~----~~~ 85 (111)
..++|++.|+|+|++|+|++++.++.+. .+++||+++++++|++|+++.+.+.+|.+..+...+.... ...
T Consensus 206 ~~~~g~~~~~~i~v~D~a~~i~~~~~~~-----~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~ 280 (314)
T TIGR02197 206 GFKDGEQLRDFVYVKDVVDVNLWLLENG-----VSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALRGKYQY 280 (314)
T ss_pred ccCCCCceeeeEEHHHHHHHHHHHHhcc-----cCceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCcccccccccc
Confidence 3458999999999999999999999873 5689999999999999999999999997755444433221 223
Q ss_pred hhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 86 SMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 86 ~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
...+|++|+++.+||+|.++++++++
T Consensus 281 ~~~~~~~k~~~~l~~~p~~~l~~~l~ 306 (314)
T TIGR02197 281 FTQADITKLRAAGYYGPFTTLEEGVK 306 (314)
T ss_pred ccccchHHHHHhcCCCCcccHHHHHH
Confidence 45689999999999999999999874
No 14
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=99.78 E-value=4.3e-18 Score=114.26 Aligned_cols=108 Identities=48% Similarity=0.791 Sum_probs=88.2
Q ss_pred eeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCC
Q psy16546 3 TVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREG 82 (111)
Q Consensus 3 ~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~ 82 (111)
.++|..+.+.+|++.++|||++|+|+++..++++..... .+++||+++++++|++|+++.+++.+|.+.++...+....
T Consensus 211 ~~~~~~~~~~~g~~~~~~v~~~D~a~~~~~~~~~~~~~~-~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~~~~ 289 (328)
T TIGR01179 211 TIFGTDYPTPDGTCVRDYIHVMDLADAHLAALEYLLNGG-ESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPRRPG 289 (328)
T ss_pred EEeCCcccCCCCceEEeeeeHHHHHHHHHHHHhhhhcCC-CcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCCCCc
Confidence 344544555688999999999999999999998642223 5789999999999999999999999998877766666555
Q ss_pred ccchhccCHHHHHHhhCCCcccc-hHhhhC
Q psy16546 83 DIVSMYANTDLAQRELGWSARCT-VEKMCK 111 (111)
Q Consensus 83 ~~~~~~~d~~k~~~~lg~~p~~~-~~~~l~ 111 (111)
+.....+|++|+++.|||+|.++ ++++++
T Consensus 290 ~~~~~~~~~~~~~~~lg~~p~~~~l~~~~~ 319 (328)
T TIGR01179 290 DPASLVADASKIRRELGWQPKYTDLEIIIK 319 (328)
T ss_pred cccchhcchHHHHHHhCCCCCcchHHHHHH
Confidence 55556679999999999999997 998873
No 15
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=99.78 E-value=2.2e-18 Score=117.43 Aligned_cols=100 Identities=25% Similarity=0.359 Sum_probs=81.2
Q ss_pred eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCcc--------
Q psy16546 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP-------- 73 (111)
Q Consensus 2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~-------- 73 (111)
+.++| +|++.|+|+||+|+|+++..++++. . .+++||+++++.+|+.++++.+++.++...+
T Consensus 221 ~~~~~------~g~~~~~~v~v~D~a~a~~~~l~~~---~-~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~ 290 (352)
T PRK10084 221 LPIYG------KGDQIRDWLYVEDHARALYKVVTEG---K-AGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQ 290 (352)
T ss_pred eEEeC------CCCeEEeeEEHHHHHHHHHHHHhcC---C-CCceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhh
Confidence 45667 9999999999999999999998864 3 5789999999999999999999999985321
Q ss_pred ceEccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 74 YIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 74 ~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
....+.++.+...+.+|++|+++++||+|.++++++|+
T Consensus 291 ~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~l~~~l~ 328 (352)
T PRK10084 291 ITYVADRPGHDRRYAIDASKISRELGWKPQETFESGIR 328 (352)
T ss_pred ccccccCCCCCceeeeCHHHHHHHcCCCCcCCHHHHHH
Confidence 11223344445556789999999999999999999873
No 16
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=99.78 E-value=2.7e-18 Score=118.09 Aligned_cols=99 Identities=16% Similarity=0.271 Sum_probs=83.1
Q ss_pred CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC
Q psy16546 1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR 80 (111)
Q Consensus 1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~ 80 (111)
++.++| +|++.|+|+|++|++++++.++++. .+++||+++++.+|++|+++.+.+.+|.+.++...|..
T Consensus 225 ~i~~~g------~g~~~r~~i~v~D~a~ai~~~~~~~-----~~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~ 293 (370)
T PLN02695 225 EFEMWG------DGKQTRSFTFIDECVEGVLRLTKSD-----FREPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGP 293 (370)
T ss_pred CeEEeC------CCCeEEeEEeHHHHHHHHHHHHhcc-----CCCceEecCCCceeHHHHHHHHHHHhCCCCCceecCCC
Confidence 356677 9999999999999999999988764 56899999999999999999999999977666665543
Q ss_pred CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 81 EGDIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 81 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
.. .....+|++|+++.|||+|.++++++|+
T Consensus 294 ~~-~~~~~~d~sk~~~~lgw~p~~~l~e~i~ 323 (370)
T PLN02695 294 EG-VRGRNSDNTLIKEKLGWAPTMRLKDGLR 323 (370)
T ss_pred CC-ccccccCHHHHHHhcCCCCCCCHHHHHH
Confidence 22 2345689999999999999999999874
No 17
>PLN02427 UDP-apiose/xylose synthase
Probab=99.77 E-value=3.9e-18 Score=117.67 Aligned_cols=103 Identities=14% Similarity=0.249 Sum_probs=79.6
Q ss_pred CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCC-CcccHHHHHHHHHHHhCCCc-c----c
Q psy16546 1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG-QGTSVLQLLRTFERVTGKPV-P----Y 74 (111)
Q Consensus 1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~-~~~s~~e~~~~i~~~~~~~~-~----~ 74 (111)
|+.++| +|++.|+|+||+|+|++++.+++++. .. .+++||++++ +.+|+.|+++.+.+.+|... . .
T Consensus 246 ~~~~~g------~g~~~r~~i~V~Dva~ai~~al~~~~-~~-~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~ 317 (386)
T PLN02427 246 PLKLVD------GGQSQRTFVYIKDAIEAVLLMIENPA-RA-NGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALEE 317 (386)
T ss_pred CeEEEC------CCCceECcEeHHHHHHHHHHHHhCcc-cc-cCceEEeCCCCCCccHHHHHHHHHHHhccccccccccc
Confidence 345666 89999999999999999999998741 13 4679999987 59999999999999998421 0 1
Q ss_pred --eEccC------CCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 75 --IVEAR------REGDIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 75 --~~~~~------~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
...+. ...+...+.+|.+|++++|||+|+++++++|+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~gl~ 362 (386)
T PLN02427 318 PTVDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLE 362 (386)
T ss_pred cccccCcccccCccccchhhccCCHHHHHHhcCCCcCccHHHHHH
Confidence 11111 11345567789999999999999999999984
No 18
>PLN00016 RNA-binding protein; Provisional
Probab=99.75 E-value=8.6e-18 Score=115.80 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=79.0
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC----------CC
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR----------EG 82 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~----------~~ 82 (111)
+|++.++|+|++|+|++++.+++++ .. .+++||+++++.+|+.|+++.+.+.+|.+.++...+.. +.
T Consensus 239 ~g~~~~~~i~v~Dva~ai~~~l~~~--~~-~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~ 315 (378)
T PLN00016 239 SGIQLTQLGHVKDLASMFALVVGNP--KA-AGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPF 315 (378)
T ss_pred CCCeeeceecHHHHHHHHHHHhcCc--cc-cCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCccccccccc
Confidence 8999999999999999999999875 34 57999999999999999999999999987654432211 11
Q ss_pred ccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 83 DIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 83 ~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
....+.+|++|++++|||+|.++++++|+
T Consensus 316 ~~~~~~~d~~ka~~~LGw~p~~~l~egl~ 344 (378)
T PLN00016 316 RDQHFFASPRKAKEELGWTPKFDLVEDLK 344 (378)
T ss_pred cccccccCHHHHHHhcCCCCCCCHHHHHH
Confidence 22345679999999999999999999873
No 19
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=99.75 E-value=1.1e-17 Score=111.81 Aligned_cols=94 Identities=18% Similarity=0.373 Sum_probs=79.4
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCccchhccCHH
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTD 92 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 92 (111)
+|++.|+|+|++|+|++++.++++. . ..+.||+++++.+|+.|+++.+++.++.+..+...+.++.......+|++
T Consensus 198 ~g~~~~~~i~v~Dv~~~~~~~~~~~---~-~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 273 (306)
T PLN02725 198 SGSPLREFLHVDDLADAVVFLMRRY---S-GAEHVNVGSGDEVTIKELAELVKEVVGFEGELVWDTSKPDGTPRKLMDSS 273 (306)
T ss_pred CCCeeeccccHHHHHHHHHHHHhcc---c-cCcceEeCCCCcccHHHHHHHHHHHhCCCCceeecCCCCCcccccccCHH
Confidence 8999999999999999999999874 2 45789999999999999999999999977666655555544455678999
Q ss_pred HHHHhhCCCcccchHhhhC
Q psy16546 93 LAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 93 k~~~~lg~~p~~~~~~~l~ 111 (111)
|+++ +||+|+++++++++
T Consensus 274 k~~~-lg~~p~~~~~~~l~ 291 (306)
T PLN02725 274 KLRS-LGWDPKFSLKDGLQ 291 (306)
T ss_pred HHHH-hCCCCCCCHHHHHH
Confidence 9975 99999999999873
No 20
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=99.75 E-value=1.4e-17 Score=111.35 Aligned_cols=100 Identities=27% Similarity=0.420 Sum_probs=81.0
Q ss_pred eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccc-eEccCC
Q psy16546 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPY-IVEARR 80 (111)
Q Consensus 2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~-~~~~~~ 80 (111)
+.++| +|++.|+|+|++|+|+++..++++. . .+++||+++++.+|++|+++.+.+.++.+... ...+.+
T Consensus 204 ~~~~~------~g~~~~~~i~v~D~a~~~~~~~~~~---~-~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~ 273 (317)
T TIGR01181 204 LPVYG------DGQQVRDWLYVEDHCRAIYLVLEKG---R-VGETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDR 273 (317)
T ss_pred ceEeC------CCceEEeeEEHHHHHHHHHHHHcCC---C-CCceEEeCCCCceeHHHHHHHHHHHhCCCcccccccCCC
Confidence 45566 8999999999999999999999864 3 56899999999999999999999999965332 223333
Q ss_pred CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 81 EGDIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 81 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
+.....+.+|++|+++.|||+|.++++++++
T Consensus 274 ~~~~~~~~~~~~k~~~~lG~~p~~~~~~~i~ 304 (317)
T TIGR01181 274 PGHDRRYAIDASKIKRELGWAPKYTFEEGLR 304 (317)
T ss_pred ccchhhhcCCHHHHHHHhCCCCCCcHHHHHH
Confidence 4444455789999999999999999998863
No 21
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=99.75 E-value=1.2e-17 Score=113.82 Aligned_cols=98 Identities=19% Similarity=0.328 Sum_probs=75.6
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCC-CcccHHHHHHHHHHHhCCCccc---------eEccC---
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG-QGTSVLQLLRTFERVTGKPVPY---------IVEAR--- 79 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~-~~~s~~e~~~~i~~~~~~~~~~---------~~~~~--- 79 (111)
+|++.|+|+||+|+|++++.+++++.... .+++||++++ ..+|++|+++.|.+.++..... ...+.
T Consensus 216 ~g~~~r~~i~v~D~a~a~~~~~~~~~~~~-~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (347)
T PRK11908 216 GGSQKRAFTDIDDGIDALMKIIENKDGVA-SGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAY 294 (347)
T ss_pred CCceeeccccHHHHHHHHHHHHhCccccC-CCCeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhc
Confidence 89999999999999999999998751113 5789999987 5799999999999999854332 11111
Q ss_pred ---CCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 80 ---REGDIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 80 ---~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
...+...+..|++|+++.|||+|+++++++++
T Consensus 295 ~~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~~l~ 329 (347)
T PRK11908 295 YGKGYQDVQNRVPKIDNTMQELGWAPKTTMDDALR 329 (347)
T ss_pred cCcCcchhccccCChHHHHHHcCCCCCCcHHHHHH
Confidence 11123345678999999999999999999873
No 22
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=99.74 E-value=1.5e-17 Score=121.47 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=76.1
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC-cccHHHHHHHHHHHhCCCccceEccCC-----------
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ-GTSVLQLLRTFERVTGKPVPYIVEARR----------- 80 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~-~~s~~e~~~~i~~~~~~~~~~~~~~~~----------- 80 (111)
+|++.|+|+||+|+|++++.++++..... .+++||+++++ .+|++|+++.+.+.+|.+......|..
T Consensus 530 ~g~~~rd~i~v~Dva~a~~~~l~~~~~~~-~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 608 (660)
T PRK08125 530 GGKQKRCFTDIRDGIEALFRIIENKDNRC-DGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSSY 608 (660)
T ss_pred CCceeeceeeHHHHHHHHHHHHhcccccc-CCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCccccccccccccc
Confidence 99999999999999999999998742122 46899999985 799999999999999854211111110
Q ss_pred ----CCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 81 ----EGDIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 81 ----~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
..+.....+|++|+++.|||+|+++++++|+
T Consensus 609 ~~~~~~~~~~~~~d~~ka~~~LGw~P~~~lee~l~ 643 (660)
T PRK08125 609 YGKGYQDVEHRKPSIRNARRLLDWEPKIDMQETID 643 (660)
T ss_pred cccccccccccCCChHHHHHHhCCCCCCcHHHHHH
Confidence 1233445679999999999999999999974
No 23
>KOG1371|consensus
Probab=99.74 E-value=1.1e-17 Score=111.18 Aligned_cols=109 Identities=53% Similarity=0.862 Sum_probs=100.3
Q ss_pred eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC
Q psy16546 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE 81 (111)
Q Consensus 2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~ 81 (111)
+.++|.++.+.||+..|+|+|+-|+|+.++.|+++..+.. ..++||++++...++.+++.++++.+|.+.++...+.|+
T Consensus 218 l~v~g~d~~t~dgt~vrdyi~v~Dla~~h~~al~k~~~~~-~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~R~ 296 (343)
T KOG1371|consen 218 LQVVGRDYTTIDGTIVRDYIHVLDLADGHVAALGKLRGAA-EFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPRRN 296 (343)
T ss_pred ceeecCcccccCCCeeecceeeEehHHHHHHHhhccccch-heeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCCCC
Confidence 4678999999999999999999999999999999874323 557999999999999999999999999999999999999
Q ss_pred CccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 82 GDIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 82 ~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
++......++++++++|||+|.++++++++
T Consensus 297 gdv~~~ya~~~~a~~elgwk~~~~iee~c~ 326 (343)
T KOG1371|consen 297 GDVAFVYANPSKAQRELGWKAKYGLQEMLK 326 (343)
T ss_pred CCceeeeeChHHHHHHhCCccccCHHHHHH
Confidence 999999999999999999999999999874
No 24
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=99.73 E-value=3.3e-17 Score=111.74 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=78.6
Q ss_pred CCCCCCccceeeeHHHHHHHHHHHHhhhhc--cccccceEEecCC--CcccHHHHHHHHHHHhC-CCccceE--ccCCCC
Q psy16546 10 GTEDGTGIRDYIHVMDLAVGHVAALNKLQG--EHLKIKFYNLGTG--QGTSVLQLLRTFERVTG-KPVPYIV--EARREG 82 (111)
Q Consensus 10 ~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~--~~~~~~~yni~~~--~~~s~~e~~~~i~~~~~-~~~~~~~--~~~~~~ 82 (111)
.+.+|++.|+|+||+|+|+|++.++++... .. .+++||++++ +++|+.++++.+.+.++ .+..+.. .+.++.
T Consensus 215 ~~~~g~~~rd~i~v~D~a~a~~~~~~~~~~~~~~-~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 293 (349)
T TIGR02622 215 IIRNPDATRPWQHVLEPLSGYLLLAEKLFTGQAE-FAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPH 293 (349)
T ss_pred EECCCCcccceeeHHHHHHHHHHHHHHHhhcCcc-ccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCc
Confidence 344899999999999999999998875311 12 3689999975 79999999999998775 3333333 223455
Q ss_pred ccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 83 DIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 83 ~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
+.....+|++|++++|||+|+++++++|+
T Consensus 294 ~~~~~~~d~~k~~~~lgw~p~~~l~~gi~ 322 (349)
T TIGR02622 294 EARLLKLDSSKARTLLGWHPRWGLEEAVS 322 (349)
T ss_pred ccceeecCHHHHHHHhCCCCCCCHHHHHH
Confidence 55667789999999999999999999874
No 25
>PLN02572 UDP-sulfoquinovose synthase
Probab=99.72 E-value=4.6e-17 Score=114.30 Aligned_cols=98 Identities=19% Similarity=0.202 Sum_probs=77.7
Q ss_pred eeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhcccccc--ceEEecCCCcccHHHHHHHHHHH---hCCCccceE
Q psy16546 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKI--KFYNLGTGQGTSVLQLLRTFERV---TGKPVPYIV 76 (111)
Q Consensus 2 ~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~--~~yni~~~~~~s~~e~~~~i~~~---~~~~~~~~~ 76 (111)
+.++| +|++.|||+||+|+|++++.++++. .. .+ .+||+++ +.+|+.|+++.+.+. +|.+..+..
T Consensus 299 i~v~g------~G~~~Rdfi~V~Dva~a~~~al~~~--~~-~g~~~i~Nigs-~~~si~el~~~i~~~~~~~g~~~~~~~ 368 (442)
T PLN02572 299 LTVYG------KGGQTRGFLDIRDTVRCIEIAIANP--AK-PGEFRVFNQFT-EQFSVNELAKLVTKAGEKLGLDVEVIS 368 (442)
T ss_pred ceecC------CCCEEECeEEHHHHHHHHHHHHhCh--hh-cCceeEEEeCC-CceeHHHHHHHHHHHHHhhCCCCCeee
Confidence 45566 9999999999999999999999864 11 23 5899986 689999999999999 887766666
Q ss_pred ccCC--CCccchhccCHHHHHHhhCCCccc---chHhhh
Q psy16546 77 EARR--EGDIVSMYANTDLAQRELGWSARC---TVEKMC 110 (111)
Q Consensus 77 ~~~~--~~~~~~~~~d~~k~~~~lg~~p~~---~~~~~l 110 (111)
.|.+ ..+...+.+|++|+++ |||+|.+ ++++++
T Consensus 369 ~p~~~~~~~~~~~~~d~~k~~~-LGw~p~~~~~~l~~~l 406 (442)
T PLN02572 369 VPNPRVEAEEHYYNAKHTKLCE-LGLEPHLLSDSLLDSL 406 (442)
T ss_pred CCCCcccccccccCccHHHHHH-cCCCCCCcHHHHHHHH
Confidence 5533 3344466789999986 9999998 677665
No 26
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=99.72 E-value=4.5e-17 Score=119.09 Aligned_cols=100 Identities=22% Similarity=0.360 Sum_probs=82.5
Q ss_pred CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCcc--ceEcc
Q psy16546 1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP--YIVEA 78 (111)
Q Consensus 1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~--~~~~~ 78 (111)
+++++| +|++.|+|+||+|+|+++..++++. . .+++||+++++.+|+.|+++.+++.+|.+.. +...+
T Consensus 212 ~i~i~g------~g~~~r~~ihV~Dva~a~~~~l~~~---~-~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~ 281 (668)
T PLN02260 212 PLPIHG------DGSNVRSYLYCEDVAEAFEVVLHKG---E-VGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVE 281 (668)
T ss_pred CeEEec------CCCceEeeEEHHHHHHHHHHHHhcC---C-CCCEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecC
Confidence 356677 9999999999999999999998764 3 5789999999999999999999999997643 33334
Q ss_pred CCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 79 RREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 79 ~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
.++.....+.+|++|+++ +||+|.++++++++
T Consensus 282 ~~p~~~~~~~~d~~k~~~-lGw~p~~~~~egl~ 313 (668)
T PLN02260 282 NRPFNDQRYFLDDQKLKK-LGWQERTSWEEGLK 313 (668)
T ss_pred CCCCCcceeecCHHHHHH-cCCCCCCCHHHHHH
Confidence 445555566789999974 99999999999874
No 27
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=99.68 E-value=4.2e-16 Score=104.56 Aligned_cols=92 Identities=16% Similarity=0.063 Sum_probs=71.8
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCC----Cccchhc
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARRE----GDIVSMY 88 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~ 88 (111)
+++..|+|+||+|+|++++.++++. .+++||+++++.+|+.|+++.+.+.++.. ++...+.+. .......
T Consensus 204 ~~~~~r~~i~v~D~a~a~~~~~~~~-----~~~~yni~~~~~~s~~el~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 277 (308)
T PRK11150 204 SENFKRDFVYVGDVAAVNLWFWENG-----VSGIFNCGTGRAESFQAVADAVLAYHKKG-EIEYIPFPDKLKGRYQAFTQ 277 (308)
T ss_pred CCceeeeeeeHHHHHHHHHHHHhcC-----CCCeEEcCCCCceeHHHHHHHHHHHhCCC-cceeccCccccccccceecc
Confidence 6678999999999999999998874 46799999999999999999999999853 222222211 1122346
Q ss_pred cCHHHHHHhhCCCcc-cchHhhhC
Q psy16546 89 ANTDLAQRELGWSAR-CTVEKMCK 111 (111)
Q Consensus 89 ~d~~k~~~~lg~~p~-~~~~~~l~ 111 (111)
.|++|+++ +||+|. .+++++|+
T Consensus 278 ~d~~k~~~-~g~~p~~~~~~~gl~ 300 (308)
T PRK11150 278 ADLTKLRA-AGYDKPFKTVAEGVA 300 (308)
T ss_pred cCHHHHHh-cCCCCCCCCHHHHHH
Confidence 79999997 799987 49999874
No 28
>KOG1431|consensus
Probab=99.64 E-value=1.6e-15 Score=97.01 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=87.1
Q ss_pred CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC--cccHHHHHHHHHHHhCCCccceEcc
Q psy16546 1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ--GTSVLQLLRTFERVTGKPVPYIVEA 78 (111)
Q Consensus 1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~--~~s~~e~~~~i~~~~~~~~~~~~~~ 78 (111)
++++|| .|+.+|+|+|++|+|++++.++.+-. .-+-.+++.++ .+|++|+++++.++++...+..+.-
T Consensus 198 ~~~VwG------sG~PlRqFiys~DLA~l~i~vlr~Y~----~vEpiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~Dt 267 (315)
T KOG1431|consen 198 ELTVWG------SGSPLRQFIYSDDLADLFIWVLREYE----GVEPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDT 267 (315)
T ss_pred eEEEec------CCChHHHHhhHhHHHHHHHHHHHhhc----CccceEeccCccceeEHHHHHHHHHHHhCCCceEEeec
Confidence 478999 99999999999999999999999872 34667888887 8999999999999999999988877
Q ss_pred CCCCccchhccCHHHHHHhhCCCcccc-hHhhh
Q psy16546 79 RREGDIVSMYANTDLAQRELGWSARCT-VEKMC 110 (111)
Q Consensus 79 ~~~~~~~~~~~d~~k~~~~lg~~p~~~-~~~~l 110 (111)
..+....+...|++|+++ |+|.|.++ ++++|
T Consensus 268 tK~DGq~kKtasnsKL~s-l~pd~~ft~l~~ai 299 (315)
T KOG1431|consen 268 TKSDGQFKKTASNSKLRS-LLPDFKFTPLEQAI 299 (315)
T ss_pred cCCCCCcccccchHHHHH-hCCCcccChHHHHH
Confidence 666666777889999999 88999886 99987
No 29
>PLN02214 cinnamoyl-CoA reductase
Probab=99.61 E-value=3.2e-15 Score=101.93 Aligned_cols=91 Identities=13% Similarity=0.184 Sum_probs=70.0
Q ss_pred CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCC-CccceEccCCCCccchhccCHH
Q psy16546 14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGK-PVPYIVEARREGDIVSMYANTD 92 (111)
Q Consensus 14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~d~~ 92 (111)
|++.|+||||+|+|++++++++++ . .+++||+++ ...+++|+++.+++.++. +.+....+.++.....+.+|++
T Consensus 219 ~~~~~~~i~V~Dva~a~~~al~~~--~--~~g~yn~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 293 (342)
T PLN02214 219 ANLTQAYVDVRDVALAHVLVYEAP--S--ASGRYLLAE-SARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQ 293 (342)
T ss_pred CCCCcCeeEHHHHHHHHHHHHhCc--c--cCCcEEEec-CCCCHHHHHHHHHHHCCCCCCCCCCccccCCCCCccccCcH
Confidence 456799999999999999999875 2 457999987 578999999999999863 2222222223344455678999
Q ss_pred HHHHhhCCCcccchHhhhC
Q psy16546 93 LAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 93 k~~~~lg~~p~~~~~~~l~ 111 (111)
|+++ |||+| ++++++|+
T Consensus 294 k~~~-LG~~p-~~lee~i~ 310 (342)
T PLN02214 294 KIKD-LGLEF-TSTKQSLY 310 (342)
T ss_pred HHHH-cCCcc-cCHHHHHH
Confidence 9985 99999 59999874
No 30
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=99.57 E-value=1.3e-14 Score=98.05 Aligned_cols=90 Identities=18% Similarity=0.169 Sum_probs=68.0
Q ss_pred CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccC--CCCccchhccCHH
Q psy16546 15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEAR--REGDIVSMYANTD 92 (111)
Q Consensus 15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~d~~ 92 (111)
.+.|+|+||+|+|++++.+++++ . .+++||++ +..+|++|+++.+.+.++.. .+...+. +..+...+.+|++
T Consensus 222 ~~~r~~i~v~Dva~a~~~~l~~~--~--~~~~~ni~-~~~~s~~ei~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 295 (325)
T PLN02989 222 TTHHRFVDVRDVALAHVKALETP--S--ANGRYIID-GPVVTIKDIENVLREFFPDL-CIADRNEDITELNSVTFNVCLD 295 (325)
T ss_pred CcCcCeeEHHHHHHHHHHHhcCc--c--cCceEEEe-cCCCCHHHHHHHHHHHCCCC-CCCCCCCCcccccccCcCCCHH
Confidence 35589999999999999999875 2 35799995 56899999999999999732 1111111 1112235678999
Q ss_pred HHHHhhCCCcccchHhhhC
Q psy16546 93 LAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 93 k~~~~lg~~p~~~~~~~l~ 111 (111)
|+++ |||+|.++++++|+
T Consensus 296 k~~~-lg~~p~~~l~~gi~ 313 (325)
T PLN02989 296 KVKS-LGIIEFTPTETSLR 313 (325)
T ss_pred HHHH-cCCCCCCCHHHHHH
Confidence 9987 99999999999984
No 31
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=99.56 E-value=2.6e-14 Score=94.91 Aligned_cols=93 Identities=15% Similarity=0.040 Sum_probs=72.3
Q ss_pred CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccc------eEc-----cCCCCc
Q psy16546 15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPY------IVE-----ARREGD 83 (111)
Q Consensus 15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~------~~~-----~~~~~~ 83 (111)
++.++|+|++|+|+++..+++++ .. .+++||+++++.+|+.|+++.+.+.+|.+... ... +.....
T Consensus 178 ~~~~~~v~v~Dva~a~~~~~~~~--~~-~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (287)
T TIGR01214 178 DQIGSPTYAKDLARVIAALLQRL--AR-ARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARR 254 (287)
T ss_pred CCCcCCcCHHHHHHHHHHHHhhc--cC-CCCeEEEECCCCcCHHHHHHHHHHHhCcccccccCceeEeecHHHcCCCCCC
Confidence 46789999999999999999874 33 68999999999999999999999999876431 111 111222
Q ss_pred cchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 84 IVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 84 ~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
.....+|++|+++.+||. .++++++|+
T Consensus 255 ~~~~~~d~~~~~~~lg~~-~~~~~~~l~ 281 (287)
T TIGR01214 255 PAYSVLDNTKLVKTLGTP-LPHWREALR 281 (287)
T ss_pred CCccccchHHHHHHcCCC-CccHHHHHH
Confidence 234678999999999994 569998873
No 32
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=99.56 E-value=6e-14 Score=93.85 Aligned_cols=93 Identities=25% Similarity=0.411 Sum_probs=78.0
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC-cccHHHHHHHHHHHhCCCcc-ceEcc--CCCCccchhc
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ-GTSVLQLLRTFERVTGKPVP-YIVEA--RREGDIVSMY 88 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~-~~s~~e~~~~i~~~~~~~~~-~~~~~--~~~~~~~~~~ 88 (111)
+|++.|+|+|++|+|++++.+++++ . .+ +||+++++ ..+..++++.+++.++.... ....+ ..........
T Consensus 205 ~~~~~~~~i~v~D~a~~~~~~~~~~--~--~~-~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (314)
T COG0451 205 DGSQTRDFVYVDDVADALLLALENP--D--GG-VFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKL 279 (314)
T ss_pred CCceeEeeEeHHHHHHHHHHHHhCC--C--Cc-EEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCCCCCCccccccc
Confidence 8899999999999999999999986 2 23 99999997 89999999999999998766 44444 2333444567
Q ss_pred cCHHHHHHhhCCCcccchHhhh
Q psy16546 89 ANTDLAQRELGWSARCTVEKMC 110 (111)
Q Consensus 89 ~d~~k~~~~lg~~p~~~~~~~l 110 (111)
+|++|+++.+||+|.+++++++
T Consensus 280 ~~~~~~~~~lg~~p~~~~~~~i 301 (314)
T COG0451 280 LDISKARAALGWEPKVSLEEGL 301 (314)
T ss_pred CCHHHHHHHhCCCCCCCHHHHH
Confidence 7999999999999999999886
No 33
>PLN02686 cinnamoyl-CoA reductase
Probab=99.55 E-value=1.1e-14 Score=100.12 Aligned_cols=90 Identities=16% Similarity=0.194 Sum_probs=75.0
Q ss_pred cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC-CCccchhccCHHHHH
Q psy16546 17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR-EGDIVSMYANTDLAQ 95 (111)
Q Consensus 17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~d~~k~~ 95 (111)
.++|+||+|+|+|++++++...+.. .+++| +++++.+|++|+++.+.+.+|.+......+.+ +.+...+.+|++|++
T Consensus 274 ~~~~v~V~Dva~A~~~al~~~~~~~-~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~d~~~~~~d~~kl~ 351 (367)
T PLN02686 274 LLATADVERLAEAHVCVYEAMGNKT-AFGRY-ICFDHVVSREDEAEELARQIGLPINKIAGNSSSDDTPARFELSNKKLS 351 (367)
T ss_pred CcCeEEHHHHHHHHHHHHhccCCCC-CCCcE-EEeCCCccHHHHHHHHHHHcCCCCCcCCCchhhcCCcccccccHHHHH
Confidence 4679999999999999998521123 56788 88899999999999999999988777666666 788888999999999
Q ss_pred HhhCCCcccchHh
Q psy16546 96 RELGWSARCTVEK 108 (111)
Q Consensus 96 ~~lg~~p~~~~~~ 108 (111)
++|||+|+...++
T Consensus 352 ~~l~~~~~~~~~~ 364 (367)
T PLN02686 352 RLMSRTRRCCYDE 364 (367)
T ss_pred HHHHHhhhccccc
Confidence 9999999876554
No 34
>PRK05865 hypothetical protein; Provisional
Probab=99.53 E-value=3.8e-14 Score=105.49 Aligned_cols=96 Identities=16% Similarity=0.088 Sum_probs=69.9
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhC---CCccceEccCCCCcc--chh
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTG---KPVPYIVEARREGDI--VSM 87 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~---~~~~~~~~~~~~~~~--~~~ 87 (111)
++++.++|+|++|+|++++.++++. .. .+++||+++++.+|++|+++.+.+... .+......+....+. ...
T Consensus 150 ~~~~~~dfIhVdDVA~Ai~~aL~~~--~~-~ggvyNIgsg~~~Si~EIae~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 226 (854)
T PRK05865 150 YADRVVQVVHSDDAQRLLVRALLDT--VI-DSGPVNLAAPGELTFRRIAAALGRPMVPIGSPVLRRVTSFAELELLHSAP 226 (854)
T ss_pred CCCceEeeeeHHHHHHHHHHHHhCC--Cc-CCCeEEEECCCcccHHHHHHHHhhhhccCCchhhhhccchhhhhcccCCc
Confidence 4566779999999999999998754 33 578999999999999999999887542 111111111111111 134
Q ss_pred ccCHHHHHHhhCCCcccchHhhhC
Q psy16546 88 YANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 88 ~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
.+|++|+++.|||+|+++++++|+
T Consensus 227 ~~D~sKar~~LGw~P~~sLeeGL~ 250 (854)
T PRK05865 227 LMDVTLLRDRWGFQPAWNAEECLE 250 (854)
T ss_pred cCCHHHHHHHhCCCCCCCHHHHHH
Confidence 679999999999999999999874
No 35
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=99.53 E-value=3.4e-14 Score=95.32 Aligned_cols=100 Identities=16% Similarity=0.038 Sum_probs=75.6
Q ss_pred CeeeeCCCCCCCC--CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHh---CCCc---
Q psy16546 1 MITVFGADYGTED--GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVT---GKPV--- 72 (111)
Q Consensus 1 ~~~~~g~~~~~~~--g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~---~~~~--- 72 (111)
+++++| + |++.+.+.+++|++.++..+++.. . .+++||+++++.+|+.|+++.|.+.+ |.+.
T Consensus 175 ~~~v~~------d~~g~~~~~~~~~d~~~~~~~~~~~~~---~-~~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~ 244 (299)
T PRK09987 175 ELSVIN------DQFGAPTGAELLADCTAHAIRVALNKP---E-VAGLYHLVASGTTTWHDYAALVFEEARKAGITLALN 244 (299)
T ss_pred CeEEeC------CCcCCCCCHHHHHHHHHHHHHHhhccC---C-CCCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcC
Confidence 356677 7 788888878888999998887653 2 35799999999999999999998764 3332
Q ss_pred cceEc-----cCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 73 PYIVE-----ARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 73 ~~~~~-----~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
.+... +.+..++....+|++|+++.|||+|. +|+++|+
T Consensus 245 ~i~~~~~~~~~~~~~rp~~~~ld~~k~~~~lg~~~~-~~~~~l~ 287 (299)
T PRK09987 245 KLNAVPTSAYPTPARRPHNSRLNTEKFQQNFALVLP-DWQVGVK 287 (299)
T ss_pred eeeecchhhcCCCCCCCCcccCCHHHHHHHhCCCCc-cHHHHHH
Confidence 12222 23345666778999999999999985 9999874
No 36
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=99.53 E-value=2.1e-14 Score=95.23 Aligned_cols=93 Identities=12% Similarity=0.091 Sum_probs=72.8
Q ss_pred CCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC---------CC
Q psy16546 12 EDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR---------EG 82 (111)
Q Consensus 12 ~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~---------~~ 82 (111)
.+|++.|+|+|++|+|+++..+++++ . ..++||+++++.+|++|+++.+.+.+|.+... ..|.. +.
T Consensus 189 g~~~~~~~~i~v~Dva~~i~~~l~~~---~-~~g~~~~~~~~~~s~~di~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~ 263 (292)
T TIGR01777 189 GSGRQWFSWIHIEDLVQLILFALENA---S-ISGPVNATAPEPVRNKEFAKALARALHRPAFF-PVPAFVLRALLGEMAD 263 (292)
T ss_pred CCCCcccccEeHHHHHHHHHHHhcCc---c-cCCceEecCCCccCHHHHHHHHHHHhCCCCcC-cCCHHHHHHHhchhhH
Confidence 48899999999999999999999874 2 46799999999999999999999999976432 23321 11
Q ss_pred c-cchhccCHHHHHHhhCCCccc-chHhhh
Q psy16546 83 D-IVSMYANTDLAQRELGWSARC-TVEKMC 110 (111)
Q Consensus 83 ~-~~~~~~d~~k~~~~lg~~p~~-~~~~~l 110 (111)
. .....++++|+++ +||+|.+ +++|++
T Consensus 264 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~ 292 (292)
T TIGR01777 264 LLLKGQRVLPEKLLE-AGFQFQYPDLDEAL 292 (292)
T ss_pred HHhCCcccccHHHHh-cCCeeeCcChhhcC
Confidence 1 1123467899986 9999999 598875
No 37
>PLN02650 dihydroflavonol-4-reductase
Probab=99.52 E-value=6.6e-14 Score=95.59 Aligned_cols=89 Identities=15% Similarity=0.257 Sum_probs=67.0
Q ss_pred ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCC-ccceEccCCCCccchhccCHHHH
Q psy16546 16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKP-VPYIVEARREGDIVSMYANTDLA 94 (111)
Q Consensus 16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~d~~k~ 94 (111)
+.|+|+||+|+|++++.+++++ . .+++| +++++.+|+.|+++++.+.++.. .+.. .+..+.+.....+|++|+
T Consensus 224 ~~r~~v~V~Dva~a~~~~l~~~--~--~~~~~-i~~~~~~s~~el~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~d~~k~ 297 (351)
T PLN02650 224 KQGQFVHLDDLCNAHIFLFEHP--A--AEGRY-ICSSHDATIHDLAKMLREKYPEYNIPAR-FPGIDEDLKSVEFSSKKL 297 (351)
T ss_pred CCcceeeHHHHHHHHHHHhcCc--C--cCceE-EecCCCcCHHHHHHHHHHhCcccCCCCC-CCCcCcccccccCChHHH
Confidence 3589999999999999999875 2 34678 56678899999999999988632 1111 122234445566799998
Q ss_pred HHhhCCCcccchHhhhC
Q psy16546 95 QRELGWSARCTVEKMCK 111 (111)
Q Consensus 95 ~~~lg~~p~~~~~~~l~ 111 (111)
+ .|||+|+++++++|+
T Consensus 298 ~-~lG~~p~~~l~egl~ 313 (351)
T PLN02650 298 T-DLGFTFKYSLEDMFD 313 (351)
T ss_pred H-HhCCCCCCCHHHHHH
Confidence 5 599999999999974
No 38
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=99.50 E-value=1.1e-13 Score=93.29 Aligned_cols=91 Identities=14% Similarity=0.086 Sum_probs=67.9
Q ss_pred CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCccchhccCHHH
Q psy16546 14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDL 93 (111)
Q Consensus 14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k 93 (111)
+++.|+|+||+|+|++++.+++++ . .++.||++ +..+|++|+++++.+.++........+....+...+.+|++|
T Consensus 219 ~~~~~~~i~v~Dva~a~~~~~~~~--~--~~~~~~~~-g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k 293 (322)
T PLN02662 219 PNASYRWVDVRDVANAHIQAFEIP--S--ASGRYCLV-ERVVHYSEVVKILHELYPTLQLPEKCADDKPYVPTYQVSKEK 293 (322)
T ss_pred CCCCcCeEEHHHHHHHHHHHhcCc--C--cCCcEEEe-CCCCCHHHHHHHHHHHCCCCCCCCCCCCccccccccccChHH
Confidence 356799999999999999999875 2 34689997 678999999999999886321111111112244556789999
Q ss_pred HHHhhCCCcccchHhhhC
Q psy16546 94 AQRELGWSARCTVEKMCK 111 (111)
Q Consensus 94 ~~~~lg~~p~~~~~~~l~ 111 (111)
+++ |||++ ++++++|+
T Consensus 294 ~~~-lg~~~-~~~~~~l~ 309 (322)
T PLN02662 294 AKS-LGIEF-IPLEVSLK 309 (322)
T ss_pred HHH-hCCcc-ccHHHHHH
Confidence 996 99997 59999874
No 39
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=99.49 E-value=1.1e-13 Score=91.08 Aligned_cols=97 Identities=18% Similarity=0.282 Sum_probs=84.0
Q ss_pred CCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccce-------------
Q psy16546 9 YGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI------------- 75 (111)
Q Consensus 9 ~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~------------- 75 (111)
+.+.|-+..|||=|..|.++++++.++++ .++.|.+++++..|++||+++..+..|.+..+.
T Consensus 214 l~lGNldAkRDWG~A~DYVe~mwlmLQq~-----~PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~ 288 (345)
T COG1089 214 LYLGNLDAKRDWGHAKDYVEAMWLMLQQE-----EPDDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKT 288 (345)
T ss_pred EEeccccccccccchHHHHHHHHHHHccC-----CCCceEEecCceeeHHHHHHHHHHHcCceEEEeecccccccccccc
Confidence 34448999999999999999999999987 678999999999999999999999999665532
Q ss_pred ------Ecc--CCCCccchhccCHHHHHHhhCCCcccchHhhh
Q psy16546 76 ------VEA--RREGDIVSMYANTDLAQRELGWSARCTVEKMC 110 (111)
Q Consensus 76 ------~~~--~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l 110 (111)
+.| .+|.++.....|.+|+++.|||+|.+++++.+
T Consensus 289 G~~~V~idp~~fRPaEV~~Llgdp~KA~~~LGW~~~~~~~elv 331 (345)
T COG1089 289 GKIIVEIDPRYFRPAEVDLLLGDPTKAKEKLGWRPEVSLEELV 331 (345)
T ss_pred CceeEEECccccCchhhhhhcCCHHHHHHHcCCccccCHHHHH
Confidence 223 36788888899999999999999999999875
No 40
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=99.47 E-value=2.5e-13 Score=91.69 Aligned_cols=89 Identities=15% Similarity=0.204 Sum_probs=66.1
Q ss_pred CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCccch--hccCH
Q psy16546 14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVS--MYANT 91 (111)
Q Consensus 14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~d~ 91 (111)
|++.|+|+||+|+|++++.+++++ . .+++||++ ++.+|+.++++++.+.++. ..+... .+..+... ..+|+
T Consensus 220 ~~~~~~~v~v~Dva~a~~~al~~~--~--~~~~yni~-~~~~s~~e~~~~i~~~~~~-~~~~~~-~~~~~~~~~~~~~d~ 292 (322)
T PLN02986 220 NNRFYRFVDVRDVALAHIKALETP--S--ANGRYIID-GPIMSVNDIIDILRELFPD-LCIADT-NEESEMNEMICKVCV 292 (322)
T ss_pred CCcCcceeEHHHHHHHHHHHhcCc--c--cCCcEEEe-cCCCCHHHHHHHHHHHCCC-CCCCCC-CccccccccCCccCH
Confidence 356789999999999999999975 2 35689995 6689999999999999873 121111 11222222 24799
Q ss_pred HHHHHhhCCCcccchHhhhC
Q psy16546 92 DLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 92 ~k~~~~lg~~p~~~~~~~l~ 111 (111)
+|++. |||+|. +++++|+
T Consensus 293 ~~~~~-lg~~~~-~l~e~~~ 310 (322)
T PLN02986 293 EKVKN-LGVEFT-PMKSSLR 310 (322)
T ss_pred HHHHH-cCCccc-CHHHHHH
Confidence 99976 999986 8999873
No 41
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=99.46 E-value=2.9e-13 Score=91.80 Aligned_cols=93 Identities=11% Similarity=0.063 Sum_probs=74.9
Q ss_pred CCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCcc-chh
Q psy16546 9 YGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDI-VSM 87 (111)
Q Consensus 9 ~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~-~~~ 87 (111)
+.+.+|++.|+|+||+|+|++++.++++. . .+++| ++++..+++.++++.+.+.+ .+...+.++++. ...
T Consensus 190 ~~i~~~~~~r~~i~v~D~a~a~~~al~~~---~-~~~~~-~~~~~~~sv~el~~~i~~~~----~~~~~~~~~g~~~~~~ 260 (324)
T TIGR03589 190 LPITDPRMTRFWITLEQGVNFVLKSLERM---L-GGEIF-VPKIPSMKITDLAEAMAPEC----PHKIVGIRPGEKLHEV 260 (324)
T ss_pred eeeCCCCceEeeEEHHHHHHHHHHHHhhC---C-CCCEE-ccCCCcEEHHHHHHHHHhhC----CeeEeCCCCCchhHhh
Confidence 34447899999999999999999999874 2 45778 57677899999999999864 344556666664 346
Q ss_pred ccCHHHHHHhhCCCcccchHhhh
Q psy16546 88 YANTDLAQRELGWSARCTVEKMC 110 (111)
Q Consensus 88 ~~d~~k~~~~lg~~p~~~~~~~l 110 (111)
.+|.+|+++.+||.|.+++++++
T Consensus 261 ~~~~~~~~~~lg~~~~~~l~~~~ 283 (324)
T TIGR03589 261 MITEDDARHTYELGDYYAILPSI 283 (324)
T ss_pred hcChhhhhhhcCCCCeEEEcccc
Confidence 67999999999999999999886
No 42
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=99.44 E-value=5e-13 Score=91.39 Aligned_cols=88 Identities=11% Similarity=0.210 Sum_probs=65.7
Q ss_pred cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCC-ccceEccCCCCccchhccCHHHHH
Q psy16546 17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKP-VPYIVEARREGDIVSMYANTDLAQ 95 (111)
Q Consensus 17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~d~~k~~ 95 (111)
.|+|+||+|+|++++.+++.+ . .+++|++ ++..+|+.|+++.+.+.++.. ......+....+.. ..+|++|++
T Consensus 245 ~~dfi~v~Dva~a~~~~l~~~--~--~~~~~~~-~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 318 (353)
T PLN02896 245 SIALVHIEDICDAHIFLMEQT--K--AEGRYIC-CVDSYDMSELINHLSKEYPCSNIQVRLDEEKRGSIP-SEISSKKLR 318 (353)
T ss_pred ceeEEeHHHHHHHHHHHHhCC--C--cCccEEe-cCCCCCHHHHHHHHHHhCCCCCccccccccccCccc-cccCHHHHH
Confidence 469999999999999999864 2 3467865 578899999999999998732 22233333333332 356889997
Q ss_pred HhhCCCcccchHhhhC
Q psy16546 96 RELGWSARCTVEKMCK 111 (111)
Q Consensus 96 ~~lg~~p~~~~~~~l~ 111 (111)
. +||+|.++++++|+
T Consensus 319 ~-lGw~p~~~l~~~i~ 333 (353)
T PLN02896 319 D-LGFEYKYGIEEIID 333 (353)
T ss_pred H-cCCCccCCHHHHHH
Confidence 5 99999999999874
No 43
>PLN00198 anthocyanidin reductase; Provisional
Probab=99.44 E-value=4.8e-13 Score=90.93 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=65.6
Q ss_pred cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCC-CccceEccCCCCccchhccCHHHHH
Q psy16546 17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGK-PVPYIVEARREGDIVSMYANTDLAQ 95 (111)
Q Consensus 17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~d~~k~~ 95 (111)
.|||+||+|+|++++.++++. . .++.|+ +++..+|+.++++.+.+.++. +.+....+. + ......+|++|++
T Consensus 237 ~~~~i~V~D~a~a~~~~~~~~--~--~~~~~~-~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~-~-~~~~~~~~~~k~~ 309 (338)
T PLN00198 237 SISITHVEDVCRAHIFLAEKE--S--ASGRYI-CCAANTSVPELAKFLIKRYPQYQVPTDFGDF-P-SKAKLIISSEKLI 309 (338)
T ss_pred CcceeEHHHHHHHHHHHhhCc--C--cCCcEE-EecCCCCHHHHHHHHHHHCCCCCCCcccccc-C-CCCccccChHHHH
Confidence 489999999999999999875 2 346784 557789999999999998863 233222221 1 2234568999999
Q ss_pred HhhCCCcccchHhhhC
Q psy16546 96 RELGWSARCTVEKMCK 111 (111)
Q Consensus 96 ~~lg~~p~~~~~~~l~ 111 (111)
+ +||+|+++++++|+
T Consensus 310 ~-~G~~p~~~l~~gi~ 324 (338)
T PLN00198 310 S-EGFSFEYGIEEIYD 324 (338)
T ss_pred h-CCceecCcHHHHHH
Confidence 8 69999999999974
No 44
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=99.38 E-value=7.7e-13 Score=86.80 Aligned_cols=94 Identities=14% Similarity=0.188 Sum_probs=72.3
Q ss_pred CCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccC-----CCCccc
Q psy16546 11 TEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEAR-----REGDIV 85 (111)
Q Consensus 11 ~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~-----~~~~~~ 85 (111)
+.+|.|+.+|||++|+++++..++++. . ..+.||++++.+++.++|..++++.++++.. ...|. -.++..
T Consensus 186 ~GsGrQ~~SWIhieD~v~~I~fll~~~---~-lsGp~N~taP~PV~~~~F~~al~r~l~RP~~-~~vP~~~~rl~LGe~a 260 (297)
T COG1090 186 LGSGRQWFSWIHIEDLVNAILFLLENE---Q-LSGPFNLTAPNPVRNKEFAHALGRALHRPAI-LPVPSFALRLLLGEMA 260 (297)
T ss_pred cCCCCceeeeeeHHHHHHHHHHHHhCc---C-CCCcccccCCCcCcHHHHHHHHHHHhCCCcc-ccCcHHHHHHHhhhhH
Confidence 349999999999999999999999995 2 6899999999999999999999999997632 22332 123333
Q ss_pred hhccC-----HHHHHHhhCCCccc-chHhhh
Q psy16546 86 SMYAN-----TDLAQRELGWSARC-TVEKMC 110 (111)
Q Consensus 86 ~~~~d-----~~k~~~~lg~~p~~-~~~~~l 110 (111)
...++ ++|+.+ .||+.+| +++++|
T Consensus 261 ~~lL~gQrvlP~kl~~-aGF~F~y~dl~~AL 290 (297)
T COG1090 261 DLLLGGQRVLPKKLEA-AGFQFQYPDLEEAL 290 (297)
T ss_pred HHHhccchhhHHHHHH-CCCeeecCCHHHHH
Confidence 33333 556655 7888877 788876
No 45
>CHL00194 ycf39 Ycf39; Provisional
Probab=99.38 E-value=1.9e-12 Score=87.50 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=74.1
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCC----------
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREG---------- 82 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~---------- 82 (111)
++++.++|+|++|+|+++..+++++ .. .+++||+++++.+|+.|+++.+.+.+|.+..+...|....
T Consensus 169 ~~~~~~~~i~v~Dva~~~~~~l~~~--~~-~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~ 245 (317)
T CHL00194 169 NESTPISYIDTQDAAKFCLKSLSLP--ET-KNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFF 245 (317)
T ss_pred CCCCccCccCHHHHHHHHHHHhcCc--cc-cCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhc
Confidence 5678899999999999999999875 44 6899999999999999999999999998766655543100
Q ss_pred -------cc---------c-hhccCHHHHHHhhCCCcc--cchHhhh
Q psy16546 83 -------DI---------V-SMYANTDLAQRELGWSAR--CTVEKMC 110 (111)
Q Consensus 83 -------~~---------~-~~~~d~~k~~~~lg~~p~--~~~~~~l 110 (111)
.. . ...++.+++++.||+.|. .++++++
T Consensus 246 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~ 292 (317)
T CHL00194 246 EWTWNISDRLAFVEILNTSNNFSSSMAELYKIFKIDPNELISLEDYF 292 (317)
T ss_pred ccchhhHHHHHHHHHHhcCCCcCCCHHHHHHHhCCChhhhhhHHHHH
Confidence 00 0 023467889999999984 5788876
No 46
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=99.33 E-value=3.6e-12 Score=85.84 Aligned_cols=90 Identities=29% Similarity=0.454 Sum_probs=68.8
Q ss_pred ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCC---------------
Q psy16546 16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR--------------- 80 (111)
Q Consensus 16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~--------------- 80 (111)
..++|+|++|+|++++.++++. . .+..|+++ ++.+|+.|+++.+.+.+|.+.+....|..
T Consensus 200 ~~~~~i~v~D~a~a~~~~~~~~---~-~~~~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (328)
T TIGR03466 200 TGLNLVHVDDVAEGHLLALERG---R-IGERYILG-GENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARL 274 (328)
T ss_pred CCcceEEHHHHHHHHHHHHhCC---C-CCceEEec-CCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 3468999999999999999874 3 46788886 68899999999999999976544333311
Q ss_pred -CCcc-----------chhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 81 -EGDI-----------VSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 81 -~~~~-----------~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
.... ....+|++|+++.|||+|. +++++++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~-~~~~~i~ 316 (328)
T TIGR03466 275 TGKEPRVTVDGVRMAKKKMFFSSAKAVRELGYRQR-PAREALR 316 (328)
T ss_pred cCCCCCCCHHHHHHHhccCCCChHHHHHHcCCCCc-CHHHHHH
Confidence 0000 1345799999999999995 9999873
No 47
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=99.29 E-value=1.1e-11 Score=82.87 Aligned_cols=95 Identities=13% Similarity=0.013 Sum_probs=63.0
Q ss_pred CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCc-cceEccC-----CCCccchhc
Q psy16546 15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV-PYIVEAR-----REGDIVSMY 88 (111)
Q Consensus 15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~-~~~~~~~-----~~~~~~~~~ 88 (111)
++.++.+|+.|+|+++..++++........|+||+++++.+|+.|+++.+++.++.+. .+...+. ....+....
T Consensus 178 d~~~~p~~~~dlA~~i~~l~~~~~~~~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~~~~rp~~~~ 257 (286)
T PF04321_consen 178 DQYRSPTYVDDLARVILELIEKNLSGASPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPRAAPRPRNTS 257 (286)
T ss_dssp SCEE--EEHHHHHHHHHHHHHHHHH-GGG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTTSSGS-SBE-
T ss_pred CceeCCEEHHHHHHHHHHHHHhcccccccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCCCCCCCCccc
Confidence 7789999999999999999998721111349999999999999999999999999776 3333321 222344578
Q ss_pred cCHHHHHHhhCCCcccchHhhh
Q psy16546 89 ANTDLAQRELGWSARCTVEKMC 110 (111)
Q Consensus 89 ~d~~k~~~~lg~~p~~~~~~~l 110 (111)
+|++|+++.||.++. +++++|
T Consensus 258 L~~~kl~~~~g~~~~-~~~~~l 278 (286)
T PF04321_consen 258 LDCRKLKNLLGIKPP-PWREGL 278 (286)
T ss_dssp B--HHHHHCTTS----BHHHHH
T ss_pred ccHHHHHHccCCCCc-CHHHHH
Confidence 899999999999875 888876
No 48
>KOG1372|consensus
Probab=99.21 E-value=4.8e-11 Score=77.79 Aligned_cols=97 Identities=18% Similarity=0.274 Sum_probs=80.2
Q ss_pred CCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccc--------------
Q psy16546 9 YGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPY-------------- 74 (111)
Q Consensus 9 ~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~-------------- 74 (111)
+.+.+-+..|||-|..|.++|+++.++++ ..+-|-|++++..|++||++..-..+|....+
T Consensus 243 ~~LGNL~a~RDWGhA~dYVEAMW~mLQ~d-----~PdDfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~~~n~~g 317 (376)
T KOG1372|consen 243 IELGNLSALRDWGHAGDYVEAMWLMLQQD-----SPDDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEVGKNDDG 317 (376)
T ss_pred EEecchhhhcccchhHHHHHHHHHHHhcC-----CCCceEEecCCcccHHHHHHHHHHhhCcEEeecccccccccccCCc
Confidence 34448889999999999999999999997 57889999999999999999987777743222
Q ss_pred ----eEcc--CCCCccchhccCHHHHHHhhCCCcccchHhhh
Q psy16546 75 ----IVEA--RREGDIVSMYANTDLAQRELGWSARCTVEKMC 110 (111)
Q Consensus 75 ----~~~~--~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l 110 (111)
...| .+|.++.....|.+|+++.|||+|+.++.+-+
T Consensus 318 ~v~V~v~~kYyRPtEVd~LqGdasKAk~~LgW~pkv~f~eLV 359 (376)
T KOG1372|consen 318 VVRVKVDPKYYRPTEVDTLQGDASKAKKTLGWKPKVTFPELV 359 (376)
T ss_pred eEEEEecccccCcchhhhhcCChHHHHHhhCCCCccCHHHHH
Confidence 1222 36788888889999999999999999987754
No 49
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=99.18 E-value=1.7e-11 Score=64.20 Aligned_cols=49 Identities=39% Similarity=0.716 Sum_probs=31.1
Q ss_pred HHHHHhCCCccceEccCCCCccchhccCHHHHHHhhCCCcccchHhhhC
Q psy16546 63 TFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 63 ~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 111 (111)
++.++.|+++++.+.|.+++++...+.|++|++++|||+|+++|+++++
T Consensus 1 A~e~vtG~~i~~~~~~rR~GD~~~~~Ad~~kA~~~LgW~p~~~L~~~i~ 49 (62)
T PF13950_consen 1 AFEKVTGKKIPVEYAPRRPGDPAHLVADISKAREELGWKPKYSLEDMIR 49 (62)
T ss_dssp HHHHHHTS---EEEE---TT--SEE-B--HHHHHHC----SSSHHHHHH
T ss_pred CcHHHHCCCCCceECCCCCCchhhhhCCHHHHHHHhCCCcCCCHHHHHH
Confidence 3678899999999999999999999999999999999999999999873
No 50
>PLN02778 3,5-epimerase/4-reductase
Probab=99.01 E-value=1.9e-09 Score=72.55 Aligned_cols=78 Identities=12% Similarity=0.068 Sum_probs=57.6
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccc---eEccC-CCC--ccchhccCH
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPY---IVEAR-REG--DIVSMYANT 91 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~---~~~~~-~~~--~~~~~~~d~ 91 (111)
++|+|++|+++|++.++++. .+++||+++++.+|+.|+++.+++.++.+.++ ...+. ... ......+|+
T Consensus 192 ~s~~yv~D~v~al~~~l~~~-----~~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~Ld~ 266 (298)
T PLN02778 192 NSMTILDELLPISIEMAKRN-----LTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNELDT 266 (298)
T ss_pred CCCEEHHHHHHHHHHHHhCC-----CCCeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHHHHHHhCCCccccccH
Confidence 57999999999999998764 45799999999999999999999999965321 11111 000 111236899
Q ss_pred HHHHHhhCC
Q psy16546 92 DLAQRELGW 100 (111)
Q Consensus 92 ~k~~~~lg~ 100 (111)
+|+++.++-
T Consensus 267 ~k~~~~~~~ 275 (298)
T PLN02778 267 TKLKREFPE 275 (298)
T ss_pred HHHHHhccc
Confidence 999997764
No 51
>KOG3019|consensus
Probab=99.01 E-value=1.1e-09 Score=70.70 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=69.0
Q ss_pred CCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEcc----------CC
Q psy16546 11 TEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEA----------RR 80 (111)
Q Consensus 11 ~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~----------~~ 80 (111)
+.+|+|+.+|||++|+|..+..++++++ ..++.|-.++++.+..||++.++++++++. +...| .+
T Consensus 205 lGsG~Q~fpWIHv~DL~~li~~ale~~~----v~GViNgvAP~~~~n~Ef~q~lg~aL~Rp~-~~pvP~fvvqA~fG~er 279 (315)
T KOG3019|consen 205 LGSGQQWFPWIHVDDLVNLIYEALENPS----VKGVINGVAPNPVRNGEFCQQLGSALSRPS-WLPVPDFVVQALFGPER 279 (315)
T ss_pred CCCCCeeeeeeehHHHHHHHHHHHhcCC----CCceecccCCCccchHHHHHHHHHHhCCCc-ccCCcHHHHHHHhCccc
Confidence 3499999999999999999999999963 689999999999999999999999999762 11122 21
Q ss_pred CCccc-hhccCHHHHHHhhCCCccc-chHhhh
Q psy16546 81 EGDIV-SMYANTDLAQRELGWSARC-TVEKMC 110 (111)
Q Consensus 81 ~~~~~-~~~~d~~k~~~~lg~~p~~-~~~~~l 110 (111)
..-+. ...+-..|+.. +||+..| .+.+++
T Consensus 280 A~~vLeGqKV~Pqral~-~Gf~f~yp~vk~Al 310 (315)
T KOG3019|consen 280 ATVVLEGQKVLPQRALE-LGFEFKYPYVKDAL 310 (315)
T ss_pred eeEEeeCCcccchhHhh-cCceeechHHHHHH
Confidence 11100 11123555555 8998887 566665
No 52
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=99.01 E-value=1.1e-09 Score=72.84 Aligned_cols=63 Identities=16% Similarity=0.118 Sum_probs=55.2
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEcc
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEA 78 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~ 78 (111)
.|+..++|+|++|+|+++..++.++ .. .+++|++++++.+|+.|+++.+.+.+|++.+....+
T Consensus 161 ~g~~~~~~v~~~Dva~~~~~~l~~~--~~-~~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~ 223 (285)
T TIGR03649 161 TGDGKIPFVSADDIARVAYRALTDK--VA-PNTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLT 223 (285)
T ss_pred CCCCccCcccHHHHHHHHHHHhcCC--Cc-CCCeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCC
Confidence 6788899999999999999999875 34 578999999999999999999999999987665554
No 53
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=98.95 E-value=1e-08 Score=68.22 Aligned_cols=91 Identities=14% Similarity=0.046 Sum_probs=72.0
Q ss_pred CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccce---E---ccCCCCccchhc
Q psy16546 15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI---V---EARREGDIVSMY 88 (111)
Q Consensus 15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~---~---~~~~~~~~~~~~ 88 (111)
+|..+.+++.|+|+++..+++.. . .+++||+++...+||.||++.|.+.++.+.... . .|.....+..+.
T Consensus 177 Dq~gsPt~~~dlA~~i~~ll~~~---~-~~~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~ 252 (281)
T COG1091 177 DQYGSPTYTEDLADAILELLEKE---K-EGGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSS 252 (281)
T ss_pred CeeeCCccHHHHHHHHHHHHhcc---c-cCcEEEEeCCCcccHHHHHHHHHHHhCCCccccccccccccCccCCCCcccc
Confidence 78889999999999999999875 3 456999999999999999999999998554222 1 123334445577
Q ss_pred cCHHHHHHhhCCCcccchHhhh
Q psy16546 89 ANTDLAQRELGWSARCTVEKMC 110 (111)
Q Consensus 89 ~d~~k~~~~lg~~p~~~~~~~l 110 (111)
+|+.|+.+.+|+.|. ++++++
T Consensus 253 L~~~k~~~~~g~~~~-~w~~~l 273 (281)
T COG1091 253 LDTKKLEKAFGLSLP-EWREAL 273 (281)
T ss_pred cchHHHHHHhCCCCc-cHHHHH
Confidence 999999999998775 777665
No 54
>KOG1502|consensus
Probab=98.94 E-value=6.8e-09 Score=70.21 Aligned_cols=87 Identities=20% Similarity=0.180 Sum_probs=60.9
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEcc-CCCCccchhccCHHHHHH
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEA-RREGDIVSMYANTDLAQR 96 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~d~~k~~~ 96 (111)
..||||+|+|+||+.|++++ . .+|+|.+. ++..++.|+++++.+.++...-....+ ..........++++|+++
T Consensus 226 ~~~VdVrDVA~AHv~a~E~~--~--a~GRyic~-~~~~~~~ei~~~l~~~~P~~~ip~~~~~~~~~~~~~~~~~~~k~k~ 300 (327)
T KOG1502|consen 226 LAFVDVRDVALAHVLALEKP--S--AKGRYICV-GEVVSIKEIADILRELFPDYPIPKKNAEEHEGFLTSFKVSSEKLKS 300 (327)
T ss_pred eeeEeHHHHHHHHHHHHcCc--c--cCceEEEe-cCcccHHHHHHHHHHhCCCCCCCCCCCccccccccccccccHHHHh
Confidence 34999999999999999997 3 46888776 456669999999999987443111111 112333334579999999
Q ss_pred hhCCCcccchHhhh
Q psy16546 97 ELGWSARCTVEKMC 110 (111)
Q Consensus 97 ~lg~~p~~~~~~~l 110 (111)
..||+ .+++++++
T Consensus 301 lg~~~-~~~l~e~~ 313 (327)
T KOG1502|consen 301 LGGFK-FRPLEETL 313 (327)
T ss_pred cccce-ecChHHHH
Confidence 44465 45888765
No 55
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=98.93 E-value=5.7e-09 Score=72.64 Aligned_cols=73 Identities=21% Similarity=0.160 Sum_probs=60.1
Q ss_pred eeeeCCCCCCCCCCccc-eeeeHHHHHHHHHHHHhhhhccccccceEEecCC-CcccHHHHHHHHHHHhCCCccceEccC
Q psy16546 2 ITVFGADYGTEDGTGIR-DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG-QGTSVLQLLRTFERVTGKPVPYIVEAR 79 (111)
Q Consensus 2 ~~~~g~~~~~~~g~~~r-~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~-~~~s~~e~~~~i~~~~~~~~~~~~~~~ 79 (111)
+.++| +|++.| .+||++|+|++++.++.++ .. .+++||++++ +.+|++|+++++.+.+|.+.++...|.
T Consensus 237 ~~~~G------dG~~~~~~~I~v~DlA~~i~~~~~~~--~~-~~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~~~~vp~ 307 (390)
T PLN02657 237 YVMFG------DGKLCACKPISEADLASFIADCVLDE--SK-INKVLPIGGPGKALTPLEQGEMLFRILGKEPKFFKVPI 307 (390)
T ss_pred eEEec------CCcccccCceeHHHHHHHHHHHHhCc--cc-cCCEEEcCCCCcccCHHHHHHHHHHHhCCCCceEEcCH
Confidence 44567 998877 5799999999999999764 34 6799999985 689999999999999998887777776
Q ss_pred CCCc
Q psy16546 80 REGD 83 (111)
Q Consensus 80 ~~~~ 83 (111)
+..+
T Consensus 308 ~~~~ 311 (390)
T PLN02657 308 QIMD 311 (390)
T ss_pred HHHH
Confidence 5433
No 56
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=98.90 E-value=8e-09 Score=69.04 Aligned_cols=61 Identities=25% Similarity=0.378 Sum_probs=53.6
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhc-----cccccceEEecCCCccc-HHHHHHHHHHHhCCCccc
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQG-----EHLKIKFYNLGTGQGTS-VLQLLRTFERVTGKPVPY 74 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~-----~~~~~~~yni~~~~~~s-~~e~~~~i~~~~~~~~~~ 74 (111)
+|+...+|+||+|+|.|+++|++...+ .. .|+.|+|++++++. +++|...+.+.+|.+.+.
T Consensus 208 ~~~~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~-~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~ 274 (280)
T PF01073_consen 208 DGNNLFDFVYVENVAHAHVLAAQALLEPGKPERV-AGQAYFITDGEPVPSFWDFMRPLWEALGYPPPK 274 (280)
T ss_pred CCCceECcEeHHHHHHHHHHHHHHhccccccccC-CCcEEEEECCCccCcHHHHHHHHHHHCCCCCCc
Confidence 888999999999999999999875422 35 78999999999999 999999999999987665
No 57
>PRK07201 short chain dehydrogenase; Provisional
Probab=98.89 E-value=6.7e-09 Score=76.13 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=50.0
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCc
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV 72 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~ 72 (111)
++...++|+||+|+|+++..+++.+ .. .+++||+++++++|+.|+++.+.+.+|.+.
T Consensus 215 ~~~~~~~~v~vddva~ai~~~~~~~--~~-~g~~~ni~~~~~~s~~el~~~i~~~~g~~~ 271 (657)
T PRK07201 215 PDGGRTNIVPVDYVADALDHLMHKD--GR-DGQTFHLTDPKPQRVGDIYNAFARAAGAPP 271 (657)
T ss_pred CCCCeeeeeeHHHHHHHHHHHhcCc--CC-CCCEEEeCCCCCCcHHHHHHHHHHHhCCCc
Confidence 5566789999999999999998764 34 578999999999999999999999999776
No 58
>PLN02996 fatty acyl-CoA reductase
Probab=98.89 E-value=4.9e-09 Score=74.94 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=49.9
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhh-ccccccceEEecCC--CcccHHHHHHHHHHHhCCCc
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQ-GEHLKIKFYNLGTG--QGTSVLQLLRTFERVTGKPV 72 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~-~~~~~~~~yni~~~--~~~s~~e~~~~i~~~~~~~~ 72 (111)
+|++.|||+||+|+|+|++.++.+.. ... .+++||++++ +++|+.++++.+.+.++..+
T Consensus 300 dg~~~~D~v~Vddvv~a~l~a~~~~~~~~~-~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p 361 (491)
T PLN02996 300 DPNSVLDVIPADMVVNAMIVAMAAHAGGQG-SEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNP 361 (491)
T ss_pred CCCeecceecccHHHHHHHHHHHHhhccCC-CCcEEEecCCCCCcccHHHHHHHHHHHhhhCC
Confidence 99999999999999999999988631 112 4679999998 89999999999999887543
No 59
>PLN02583 cinnamoyl-CoA reductase
Probab=98.88 E-value=1.2e-08 Score=68.50 Aligned_cols=80 Identities=10% Similarity=-0.013 Sum_probs=56.5
Q ss_pred cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCC-ccceEccCCCCccchhccCHHHHH
Q psy16546 17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKP-VPYIVEARREGDIVSMYANTDLAQ 95 (111)
Q Consensus 17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~d~~k~~ 95 (111)
.++||||+|+|+|++++++++ . .++.|+++++...++.++++++.+.++.- .+.... ..........++++|++
T Consensus 216 ~~~~v~V~Dva~a~~~al~~~--~--~~~r~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~k~~ 290 (297)
T PLN02583 216 VLVTVDVNFLVDAHIRAFEDV--S--SYGRYLCFNHIVNTEEDAVKLAQMLSPLIPSPPPYE-MQGSEVYQQRIRNKKLN 290 (297)
T ss_pred CcceEEHHHHHHHHHHHhcCc--c--cCCcEEEecCCCccHHHHHHHHHHhCCCCCCCCccc-ccCCCccccccChHHHH
Confidence 468999999999999999975 3 45689888776666788999999988632 211111 11122234567999998
Q ss_pred HhhCCCc
Q psy16546 96 RELGWSA 102 (111)
Q Consensus 96 ~~lg~~p 102 (111)
+ ||++.
T Consensus 291 ~-l~~~~ 296 (297)
T PLN02583 291 K-LMEDF 296 (297)
T ss_pred H-hCccc
Confidence 8 98863
No 60
>PRK12320 hypothetical protein; Provisional
Probab=98.81 E-value=1.7e-08 Score=74.51 Aligned_cols=81 Identities=22% Similarity=0.229 Sum_probs=61.7
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCccchhccCHHHHHHh
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRE 97 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 97 (111)
..++||+|++++++.+++.. .+++|||++++.+|+.|+++++..... ... +....+......+...++..
T Consensus 158 I~vIyVdDvv~alv~al~~~-----~~GiyNIG~~~~~Si~el~~~i~~~~p-~~~----~~~~~~~~~~~pdi~~a~~~ 227 (699)
T PRK12320 158 IRVLHLDDLVRFLVLALNTD-----RNGVVDLATPDTTNVVTAWRLLRSVDP-HLR----TRRVRSWEQLIPEVDIAAVQ 227 (699)
T ss_pred eEEEEHHHHHHHHHHHHhCC-----CCCEEEEeCCCeeEHHHHHHHHHHhCC-Ccc----ccccccHHHhCCCCchhhhh
Confidence 45689999999999999864 456999999999999999999877622 111 11334455566688888888
Q ss_pred hCCCcccchHh
Q psy16546 98 LGWSARCTVEK 108 (111)
Q Consensus 98 lg~~p~~~~~~ 108 (111)
++|.|+.+++.
T Consensus 228 ~~w~~~~~~~~ 238 (699)
T PRK12320 228 EDWNFEFGWQA 238 (699)
T ss_pred cCCCCcchHHH
Confidence 99999987765
No 61
>KOG1430|consensus
Probab=98.77 E-value=3.6e-08 Score=67.72 Aligned_cols=97 Identities=21% Similarity=0.280 Sum_probs=76.2
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhh---ccccccceEEecCCCcccHHHHHHHHHHHhCCCcc-ceEccCC--------
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQ---GEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP-YIVEARR-------- 80 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~---~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~-~~~~~~~-------- 80 (111)
+++..-||+|++.++.|++.|..... +.. .|+.|+|++++++...++...+.+.+|...+ ....|..
T Consensus 210 ~~~~~~~~~~~~Nva~ahilA~~aL~~~~~~~-~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l 288 (361)
T KOG1430|consen 210 DGENLNDFTYGENVAWAHILAARALLDKSPSV-NGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYL 288 (361)
T ss_pred ccccccceEEechhHHHHHHHHHHHHhcCCcc-CceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHH
Confidence 88889999999999999999887542 234 7899999999999999999999999998766 3323221
Q ss_pred ------------CC----cc----chhccCHHHHHHhhCCCcccchHhhh
Q psy16546 81 ------------EG----DI----VSMYANTDLAQRELGWSARCTVEKMC 110 (111)
Q Consensus 81 ------------~~----~~----~~~~~d~~k~~~~lg~~p~~~~~~~l 110 (111)
+. .+ .....|.+|+++.+||.|..++++++
T Consensus 289 ~e~~~~~l~p~~p~lt~~~v~~~~~~~~f~~~kA~~~lgY~P~~~~~e~~ 338 (361)
T KOG1430|consen 289 LEIVYFLLRPYQPILTRFRVALLGVTRTFSIEKAKRELGYKPLVSLEEAI 338 (361)
T ss_pred HHHHHHhccCCCCCcChhheeeeccccccCHHHHHHhhCCCCcCCHHHHH
Confidence 00 00 11456999999999999999999875
No 62
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=98.75 E-value=2.1e-08 Score=64.57 Aligned_cols=41 Identities=46% Similarity=0.674 Sum_probs=36.6
Q ss_pred CeeeeCCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEec
Q psy16546 1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLG 50 (111)
Q Consensus 1 ~~~~~g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~ 50 (111)
|+.++| +|++.|+|+|++|+|++++.+++++ .. .+++||||
T Consensus 196 ~~~~~~------~~~~~~~~i~v~D~a~~~~~~~~~~--~~-~~~~yNig 236 (236)
T PF01370_consen 196 PIKIPG------DGSQVRDFIHVDDLAEAIVAALENP--KA-AGGIYNIG 236 (236)
T ss_dssp SEEEES------TSSCEEEEEEHHHHHHHHHHHHHHS--CT-TTEEEEES
T ss_pred cccccC------CCCCccceEEHHHHHHHHHHHHhCC--CC-CCCEEEeC
Confidence 467788 9999999999999999999999998 34 58999986
No 63
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=98.46 E-value=5.4e-07 Score=66.62 Aligned_cols=85 Identities=7% Similarity=0.003 Sum_probs=60.7
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceE-----cc--CCCCccchhccC
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIV-----EA--RREGDIVSMYAN 90 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~-----~~--~~~~~~~~~~~d 90 (111)
.+..+++|++.+++.+++.. .+++||+++++.+|+.|+++.|.+.++....+.. .+ .....+.. .+|
T Consensus 563 ~~~~~~~~~~~~~~~l~~~~-----~~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~a~rp~~-~l~ 636 (668)
T PLN02260 563 NSMTVLDELLPISIEMAKRN-----LRGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLEEQAKVIVAPRSNN-EMD 636 (668)
T ss_pred CCceehhhHHHHHHHHHHhC-----CCceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHHHhhhHhhCCCccc-ccc
Confidence 35788899999988888753 5699999999999999999999998852211111 11 11122233 789
Q ss_pred HHHHHHhhCCCcccchHhhh
Q psy16546 91 TDLAQRELGWSARCTVEKMC 110 (111)
Q Consensus 91 ~~k~~~~lg~~p~~~~~~~l 110 (111)
++|+++.+|. + .+++++|
T Consensus 637 ~~k~~~~~~~-~-~~~~~~l 654 (668)
T PLN02260 637 ASKLKKEFPE-L-LSIKESL 654 (668)
T ss_pred HHHHHHhCcc-c-cchHHHH
Confidence 9999998887 4 3677765
No 64
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=98.23 E-value=3.7e-06 Score=57.28 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=45.5
Q ss_pred cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCcc
Q psy16546 17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP 73 (111)
Q Consensus 17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~ 73 (111)
.++|+|++|+|++++.++.++.... .+++||+++++++++.++++.+.+ +|.+.+
T Consensus 229 ~~~~~~vddva~ai~~~~~~~~~~~-~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~ 283 (367)
T TIGR01746 229 TEDLTPVDYVARAIVALSSQPAASA-GGPVFHVVNPEPVSLDEFLEWLER-AGYNLK 283 (367)
T ss_pred ccCcccHHHHHHHHHHHHhCCCccc-CCceEEecCCCCCCHHHHHHHHHH-cCCCCC
Confidence 5789999999999999988751101 278999999999999999999999 776644
No 65
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.85 E-value=6.6e-05 Score=48.64 Aligned_cols=60 Identities=20% Similarity=0.198 Sum_probs=49.1
Q ss_pred CCCccceee-eHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccc
Q psy16546 13 DGTGIRDYI-HVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPY 74 (111)
Q Consensus 13 ~g~~~r~~v-~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~ 74 (111)
+++....++ ..+|++++...++.++.... .+..+.++ ++.+|..|+++.+.+.+|+++++
T Consensus 171 ~~~~~~~~~~~~~Dvg~~va~il~~p~~~~-~~~~~~~~-~~~~t~~eia~~~s~~~G~~v~y 231 (233)
T PF05368_consen 171 PGNQKAVPVTDTRDVGRAVAAILLDPEKHN-NGKTIFLA-GETLTYNEIAAILSKVLGKKVKY 231 (233)
T ss_dssp TSTSEEEEEEHHHHHHHHHHHHHHSGGGTT-EEEEEEEG-GGEEEHHHHHHHHHHHHTSEEEE
T ss_pred CCCccccccccHHHHHHHHHHHHcChHHhc-CCEEEEeC-CCCCCHHHHHHHHHHHHCCccEE
Confidence 888777775 99999999999999873222 36777776 48899999999999999987654
No 66
>KOG2865|consensus
Probab=97.73 E-value=8.5e-05 Score=50.01 Aligned_cols=61 Identities=16% Similarity=0.279 Sum_probs=52.2
Q ss_pred CeeeeCCCCCCCCCC-ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCC
Q psy16546 1 MITVFGADYGTEDGT-GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGK 70 (111)
Q Consensus 1 ~~~~~g~~~~~~~g~-~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~ 70 (111)
+++|++ .|. .....|||-|+|.+++.|++.+ .. .|.+|...++..+.+.|+++.+-+....
T Consensus 234 ~~pL~~------~GekT~K~PVyV~DVaa~IvnAvkDp--~s-~Gktye~vGP~~yql~eLvd~my~~~~~ 295 (391)
T KOG2865|consen 234 FLPLIG------KGEKTVKQPVYVVDVAAAIVNAVKDP--DS-MGKTYEFVGPDRYQLSELVDIMYDMARE 295 (391)
T ss_pred ceeeec------CCcceeeccEEEehHHHHHHHhccCc--cc-cCceeeecCCchhhHHHHHHHHHHHHhh
Confidence 356777 774 5568899999999999999987 66 7999999999999999999999887754
No 67
>PLN02503 fatty acyl-CoA reductase 2
Probab=97.57 E-value=0.00032 Score=51.74 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=47.5
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhc--cccccceEEecCC--CcccHHHHHHHHHHHhCCC
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQG--EHLKIKFYNLGTG--QGTSVLQLLRTFERVTGKP 71 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~--~~~~~~~yni~~~--~~~s~~e~~~~i~~~~~~~ 71 (111)
+++..-|+|+|+.+|+|++.++..... .. .+.+||++++ +++++.++++.+.+.+...
T Consensus 414 ~~~~~~DiVPVD~vvna~i~a~a~~~~~~~~-~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~~ 475 (605)
T PLN02503 414 DPNGVLDVVPADMVVNATLAAMAKHGGAAKP-EINVYQIASSVVNPLVFQDLARLLYEHYKSS 475 (605)
T ss_pred CCCeeEeEEeecHHHHHHHHHHHhhhcccCC-CCCEEEeCCCCCCCeEHHHHHHHHHHHHhhC
Confidence 889999999999999999999543211 12 4689999988 8999999999999887643
No 68
>KOG2774|consensus
Probab=97.49 E-value=0.00035 Score=46.01 Aligned_cols=90 Identities=13% Similarity=0.016 Sum_probs=64.3
Q ss_pred CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCC---ccchhccCH
Q psy16546 15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREG---DIVSMYANT 91 (111)
Q Consensus 15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~d~ 91 (111)
+..-.++|..|+-++++.++..+.+.. ..++||+. +-..|-.|++..+.+.+. ...+.+.+..-. +.....+|.
T Consensus 248 dtrlpmmy~~dc~~~~~~~~~a~~~~l-krr~ynvt-~~sftpee~~~~~~~~~p-~~~i~y~~~srq~iad~wp~~~dd 324 (366)
T KOG2774|consen 248 DTRLPMMYDTDCMASVIQLLAADSQSL-KRRTYNVT-GFSFTPEEIADAIRRVMP-GFEIDYDICTRQSIADSWPMSLDD 324 (366)
T ss_pred CccCceeehHHHHHHHHHHHhCCHHHh-hhheeeec-eeccCHHHHHHHHHhhCC-CceeecccchhhhhhhhcccccCc
Confidence 445589999999999999998775455 77899998 678999999999999885 223333332111 112244688
Q ss_pred HHHHHhhCCCcccchH
Q psy16546 92 DLAQRELGWSARCTVE 107 (111)
Q Consensus 92 ~k~~~~lg~~p~~~~~ 107 (111)
+.+++++.|+-.+.+.
T Consensus 325 s~ar~~wh~~h~~~l~ 340 (366)
T KOG2774|consen 325 SEARTEWHEKHSLHLL 340 (366)
T ss_pred hhHhhHHHHhhhhhHH
Confidence 8899888887665443
No 69
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=97.40 E-value=0.00045 Score=54.97 Aligned_cols=57 Identities=16% Similarity=0.075 Sum_probs=45.6
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCC
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKP 71 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~ 71 (111)
++...++|++|+|+|++++.++.++.... ...+||++++..+++.++++.+.+. |.+
T Consensus 1209 ~~~~~~~~~~Vddva~ai~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~l~~~-g~~ 1265 (1389)
T TIGR03443 1209 NINNTVNMVPVDHVARVVVAAALNPPKES-ELAVAHVTGHPRIRFNDFLGTLKTY-GYD 1265 (1389)
T ss_pred CCCCccccccHHHHHHHHHHHHhCCcccC-CCCEEEeCCCCCCcHHHHHHHHHHh-CCC
Confidence 55667999999999999999987652112 3468999999999999999999764 544
No 70
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.68 E-value=0.018 Score=42.18 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=61.4
Q ss_pred CCCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhC----CCccceEccCCC
Q psy16546 6 GADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTG----KPVPYIVEARRE 81 (111)
Q Consensus 6 g~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~----~~~~~~~~~~~~ 81 (111)
|.+...++.+-.|=|+.+.|+|+..++|.... . .|++|-+--|+++++.|+++.+-+.+| .+.++.+...+|
T Consensus 437 GgplTvTdp~mtRyfMTI~EAv~LVlqA~a~~---~-gGeifvldMGepvkI~dLAk~mi~l~g~~~~~dI~I~~~GlRp 512 (588)
T COG1086 437 GGPLTVTDPDMTRFFMTIPEAVQLVLQAGAIA---K-GGEIFVLDMGEPVKIIDLAKAMIELAGQTPPGDIAIKIIGLRP 512 (588)
T ss_pred CCCccccCCCceeEEEEHHHHHHHHHHHHhhc---C-CCcEEEEcCCCCeEHHHHHHHHHHHhCCCCCCCCCeEEEecCC
Confidence 45677889999999999999999999999984 4 789999998999999999999999997 234555555555
Q ss_pred Cc
Q psy16546 82 GD 83 (111)
Q Consensus 82 ~~ 83 (111)
++
T Consensus 513 GE 514 (588)
T COG1086 513 GE 514 (588)
T ss_pred ch
Confidence 54
No 71
>PRK07074 short chain dehydrogenase; Provisional
Probab=96.53 E-value=0.0035 Score=40.95 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=39.9
Q ss_pred ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHH
Q psy16546 16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFER 66 (111)
Q Consensus 16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~ 66 (111)
..++|+|++|++++++.++....... .+..+++.++...+..|+++.+.+
T Consensus 205 ~~~~~~~~~d~a~~~~~l~~~~~~~~-~g~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 205 PLQDFATPDDVANAVLFLASPAARAI-TGVCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred CCCCCCCHHHHHHHHHHHcCchhcCc-CCcEEEeCCCcCcCChhhhhhhcc
Confidence 35789999999999999997542233 467888998999999999887654
No 72
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=96.51 E-value=0.0047 Score=41.84 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=51.7
Q ss_pred CCCCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCC------CccceEccCC
Q psy16546 7 ADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGK------PVPYIVEARR 80 (111)
Q Consensus 7 ~~~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~------~~~~~~~~~~ 80 (111)
.+...++.+-.|=|+.++++++.++.++... . .+++|.+--|+++++.++++.+.+..|. +.++.+...+
T Consensus 190 ~PlTvT~p~mtRffmti~EAv~Lvl~a~~~~---~-~geifvl~mg~~v~I~dlA~~~i~~~g~~~~~~~~i~I~~~GlR 265 (293)
T PF02719_consen 190 GPLTVTDPDMTRFFMTIEEAVQLVLQAAALA---K-GGEIFVLDMGEPVKILDLAEAMIELSGLEPGKKPDIPIKFTGLR 265 (293)
T ss_dssp SSEEECETT-EEEEE-HHHHHHHHHHHHHH------TTEEEEE---TCEECCCHHHHHHHHTT-EEEESSSS-EEE----
T ss_pred CcceeCCCCcEEEEecHHHHHHHHHHHHhhC---C-CCcEEEecCCCCcCHHHHHHHHHhhcccccccCCCcceEEcCCC
Confidence 4555668889999999999999999999874 3 7889999888999999999999999973 4566777667
Q ss_pred CCccc
Q psy16546 81 EGDIV 85 (111)
Q Consensus 81 ~~~~~ 85 (111)
+++..
T Consensus 266 pGEKl 270 (293)
T PF02719_consen 266 PGEKL 270 (293)
T ss_dssp TT--S
T ss_pred CCcce
Confidence 76644
No 73
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=95.96 E-value=0.007 Score=39.33 Aligned_cols=41 Identities=12% Similarity=0.082 Sum_probs=31.2
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG 54 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~ 54 (111)
.+.+.++|+|++|+|++++.++....... .++.|+++++..
T Consensus 213 ~~~~~~~~~~~~d~a~~~~~~~~~~~~~~-~g~~~~~~~g~~ 253 (255)
T TIGR01963 213 PGQPTKRFVTVDEVAETALFLASDAAAGI-TGQAIVLDGGWT 253 (255)
T ss_pred ccCccccCcCHHHHHHHHHHHcCccccCc-cceEEEEcCccc
Confidence 35567899999999999999998642233 477899987643
No 74
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.81 E-value=0.0087 Score=39.09 Aligned_cols=40 Identities=13% Similarity=-0.050 Sum_probs=30.7
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ 53 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~ 53 (111)
.+...++|+|++|++++++.++....... .++.|+++++.
T Consensus 220 ~~~~~~~~~~~~dva~a~~~l~~~~~~~~-~g~~~~~~~g~ 259 (262)
T PRK13394 220 GKTVDGVFTTVEDVAQTVLFLSSFPSAAL-TGQSFVVSHGW 259 (262)
T ss_pred cCCCCCCCCCHHHHHHHHHHHcCccccCC-cCCEEeeCCce
Confidence 45567899999999999999998653233 46788888664
No 75
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.58 E-value=0.079 Score=34.72 Aligned_cols=56 Identities=25% Similarity=0.284 Sum_probs=50.0
Q ss_pred cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccce
Q psy16546 17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI 75 (111)
Q Consensus 17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~ 75 (111)
..+++.++|++.++..++..+ .. .+++|.+++++..+..+....+.+..+++....
T Consensus 170 ~~~~i~~~d~a~~~~~~l~~~--~~-~~~~~~l~g~~~~~~~~~~~~l~~~~gr~~~~~ 225 (275)
T COG0702 170 RLSPIAVDDVAEALAAALDAP--AT-AGRTYELAGPEALTLAELASGLDYTIGRPVGLI 225 (275)
T ss_pred ceeeeEHHHHHHHHHHHhcCC--cc-cCcEEEccCCceecHHHHHHHHHHHhCCcceee
Confidence 678999999999999999876 35 789999999999999999999999999886663
No 76
>PRK05875 short chain dehydrogenase; Provisional
Probab=94.91 E-value=0.059 Score=35.61 Aligned_cols=51 Identities=16% Similarity=0.032 Sum_probs=37.9
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc----cHHHHHHHHHHHhC
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT----SVLQLLRTFERVTG 69 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~----s~~e~~~~i~~~~~ 69 (111)
..+.+++|+|+++..++.++.... .+++|+++++..+ ++.|+++.+.+..+
T Consensus 217 ~~~~~~~dva~~~~~l~~~~~~~~-~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 271 (276)
T PRK05875 217 PRVGEVEDVANLAMFLLSDAASWI-TGQVINVDGGHMLRRGPDFSSMLEPVFGADG 271 (276)
T ss_pred CCCcCHHHHHHHHHHHcCchhcCc-CCCEEEECCCeeccCCccHHHHHHHHhhHHH
Confidence 457789999999999998763223 4789999988775 67777766665544
No 77
>PRK06482 short chain dehydrogenase; Provisional
Probab=94.79 E-value=0.036 Score=36.63 Aligned_cols=45 Identities=11% Similarity=0.027 Sum_probs=38.1
Q ss_pred eeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhC
Q psy16546 21 IHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTG 69 (111)
Q Consensus 21 v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~ 69 (111)
.+++|++++++.++..+ . .+..||+++++..++.++++.+.+.+.
T Consensus 219 ~d~~~~~~a~~~~~~~~---~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 263 (276)
T PRK06482 219 GDPQKMVQAMIASADQT---P-APRRLTLGSDAYASIRAALSERLAALE 263 (276)
T ss_pred CCHHHHHHHHHHHHcCC---C-CCeEEecChHHHHHHHHHHHHHHHHHH
Confidence 68999999999999864 2 457799999999999999888887775
No 78
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.29 E-value=0.052 Score=35.21 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=28.4
Q ss_pred cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546 17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG 54 (111)
Q Consensus 17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~ 54 (111)
.+.|++++|+|++++.+++.. .. .+++|+++++..
T Consensus 212 ~~~~~~~~dva~~~~~~~~~~--~~-~g~~~~i~~g~~ 246 (252)
T PRK06077 212 MGKILDPEEVAEFVAAILKIE--SI-TGQVFVLDSGES 246 (252)
T ss_pred CCCCCCHHHHHHHHHHHhCcc--cc-CCCeEEecCCee
Confidence 346899999999999999754 44 588999998754
No 79
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=94.28 E-value=0.048 Score=35.62 Aligned_cols=43 Identities=14% Similarity=-0.028 Sum_probs=33.1
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS 56 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s 56 (111)
++...+.+.+.+|+|+++..++....... .+.+|++++|+.+|
T Consensus 215 ~~~~~~~~~~~~dva~~~~~l~s~~~~~~-~g~~~~v~gg~~~~ 257 (257)
T PRK07067 215 EAVPLGRMGVPDDLTGMALFLASADADYI-VAQTYNVDGGNWMS 257 (257)
T ss_pred hcCCCCCccCHHHHHHHHHHHhCcccccc-cCcEEeecCCEeCC
Confidence 34567789999999999999998653334 57899999876543
No 80
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.22 E-value=0.048 Score=35.45 Aligned_cols=38 Identities=8% Similarity=-0.052 Sum_probs=28.6
Q ss_pred CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
+...+.|++++|+|+++..++....... .++.|+++++
T Consensus 217 ~~~~~~~~~~~d~a~~~~~l~~~~~~~~-~g~~~~~~~g 254 (258)
T PRK12429 217 LVPQKRFTTVEEIADYALFLASFAAKGV-TGQAWVVDGG 254 (258)
T ss_pred cCCccccCCHHHHHHHHHHHcCccccCc-cCCeEEeCCC
Confidence 3455789999999999999987642233 4788888865
No 81
>PRK06194 hypothetical protein; Provisional
Probab=93.96 E-value=0.026 Score=37.51 Aligned_cols=65 Identities=8% Similarity=0.013 Sum_probs=44.5
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEc-cCCCCccchhccCH
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVE-ARREGDIVSMYANT 91 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~d~ 91 (111)
+|.+.|+|+|++|++.++.. .+. ++..++++.+.+.+......... +.+..+...++.|.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~----------~~~---------~s~~dva~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (287)
T PRK06194 214 TAPPTRSQLIAQAMSQKAVG----------SGK---------VTAEEVAQLVFDAIRAGRFYIYSHPQALASVRTRMEDI 274 (287)
T ss_pred CccccchhhHHHHHHHhhhh----------ccC---------CCHHHHHHHHHHHHHcCCeEEEcCHHHHHHHHHHHHHH
Confidence 78899999999999887531 111 68999999999987644333332 33345555667788
Q ss_pred HHHHH
Q psy16546 92 DLAQR 96 (111)
Q Consensus 92 ~k~~~ 96 (111)
+|+++
T Consensus 275 ~~~~~ 279 (287)
T PRK06194 275 VQQRN 279 (287)
T ss_pred HHhcC
Confidence 77754
No 82
>PRK07806 short chain dehydrogenase; Provisional
Probab=93.74 E-value=0.08 Score=34.31 Aligned_cols=34 Identities=12% Similarity=0.003 Sum_probs=28.6
Q ss_pred eeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc
Q psy16546 19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT 55 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~ 55 (111)
.|++++|+|++++.+++.. .. .+.+|++++++..
T Consensus 212 ~~~~~~dva~~~~~l~~~~--~~-~g~~~~i~~~~~~ 245 (248)
T PRK07806 212 KLYTVSEFAAEVARAVTAP--VP-SGHIEYVGGADYF 245 (248)
T ss_pred ccCCHHHHHHHHHHHhhcc--cc-CccEEEecCccce
Confidence 7999999999999999864 45 6889999987653
No 83
>KOG1221|consensus
Probab=92.78 E-value=0.73 Score=33.47 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=43.0
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccc---cccceEEecCC--CcccHHHHHHHHHHHhC
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEH---LKIKFYNLGTG--QGTSVLQLLRTFERVTG 69 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~---~~~~~yni~~~--~~~s~~e~~~~i~~~~~ 69 (111)
|.+..-|+|-|+.||++++.+.-.- ... ....+||++++ +++++.++.+...+...
T Consensus 272 d~~~~adiIPvD~vvN~~ia~~~~~-~~~~~~~~~~IY~~tss~~Np~t~~~~~e~~~~~~~ 332 (467)
T KOG1221|consen 272 DPKAVADIIPVDMVVNAMIASAWQH-AGNSKEKTPPIYHLTSSNDNPVTWGDFIELALRYFE 332 (467)
T ss_pred ccccccceeeHHHHHHHHHHHHHHH-hccCCCCCCcEEEecccccCcccHHHHHHHHHHhcc
Confidence 6678889999999999999766322 111 01459999886 47999999999998875
No 84
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=92.59 E-value=0.38 Score=31.47 Aligned_cols=45 Identities=20% Similarity=0.101 Sum_probs=34.0
Q ss_pred eeeeHHHHHHHHHHHHhhhhccccccceEEecC---CCcccHHHHHHHHHH
Q psy16546 19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGT---GQGTSVLQLLRTFER 66 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~---~~~~s~~e~~~~i~~ 66 (111)
.+++.+|+|++++.++..+ .. .+.++.+.+ ....++.+++..+.+
T Consensus 203 ~~i~~~dvA~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 203 GSISRDQVAEVAVEALLCP--ES-SYKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred CcccHHHHHHHHHHHhcCh--hh-cCcEEEEecCCCCCchhHHHHHHHhhc
Confidence 5799999999999999876 33 456677765 334788888887654
No 85
>PRK08324 short chain dehydrogenase; Validated
Probab=91.22 E-value=0.21 Score=37.76 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=31.8
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT 55 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~ 55 (111)
+++..+.+++++|+|++++.++....... .+.+|++++|...
T Consensus 636 ~~~~l~~~v~~~DvA~a~~~l~s~~~~~~-tG~~i~vdgG~~~ 677 (681)
T PRK08324 636 ARNLLKREVTPEDVAEAVVFLASGLLSKT-TGAIITVDGGNAA 677 (681)
T ss_pred hcCCcCCccCHHHHHHHHHHHhCccccCC-cCCEEEECCCchh
Confidence 56677899999999999999885321134 5789999987653
No 86
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=90.88 E-value=0.23 Score=32.40 Aligned_cols=40 Identities=10% Similarity=-0.106 Sum_probs=30.1
Q ss_pred CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546 14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG 54 (111)
Q Consensus 14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~ 54 (111)
+...+.+++.+|++.+++.++.+..... .+.+|++++++.
T Consensus 218 ~~~~~~~~~~~dv~~~~~~l~~~~~~~~-~G~~~~v~~g~~ 257 (259)
T PRK12384 218 KVPLKRGCDYQDVLNMLLFYASPKASYC-TGQSINVTGGQV 257 (259)
T ss_pred hCcccCCCCHHHHHHHHHHHcCcccccc-cCceEEEcCCEE
Confidence 4456789999999999998887642223 578899987754
No 87
>PRK07775 short chain dehydrogenase; Provisional
Probab=90.75 E-value=0.26 Score=32.65 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=24.0
Q ss_pred ccceeeeHHHHHHHHHHHHhhhhccccccceEEec
Q psy16546 16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLG 50 (111)
Q Consensus 16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~ 50 (111)
..+.|+|++|+|++++.+++++ . .+.+||+.
T Consensus 219 ~~~~~~~~~dva~a~~~~~~~~---~-~~~~~~~~ 249 (274)
T PRK07775 219 RHDYFLRASDLARAITFVAETP---R-GAHVVNME 249 (274)
T ss_pred ccccccCHHHHHHHHHHHhcCC---C-CCCeeEEe
Confidence 3467999999999999999875 2 45677775
No 88
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=90.59 E-value=0.32 Score=31.49 Aligned_cols=37 Identities=14% Similarity=0.036 Sum_probs=29.1
Q ss_pred CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546 15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ 53 (111)
Q Consensus 15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~ 53 (111)
...+.|.|++|++++++.+++.. ... .++.||++++.
T Consensus 209 ~~~~~~~~~edva~~~~~~~~~~-~~~-~g~~~~i~~g~ 245 (247)
T PRK12935 209 IPKKRFGQADEIAKGVVYLCRDG-AYI-TGQQLNINGGL 245 (247)
T ss_pred CCCCCCcCHHHHHHHHHHHcCcc-cCc-cCCEEEeCCCc
Confidence 45678999999999999998753 124 67999998763
No 89
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.11 E-value=0.37 Score=30.94 Aligned_cols=37 Identities=8% Similarity=-0.110 Sum_probs=28.6
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT 55 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~ 55 (111)
..+++.+|+++++..++++..... .+++|+++++..+
T Consensus 212 ~~~~~~~dva~~~~~~~~~~~~~~-~g~~~~i~~g~~~ 248 (249)
T PRK12825 212 GRSGTPEDIARAVAFLCSDASDYI-TGQVIEVTGGVDV 248 (249)
T ss_pred CCCcCHHHHHHHHHHHhCccccCc-CCCEEEeCCCEee
Confidence 348999999999999997652233 5899999987543
No 90
>PRK08263 short chain dehydrogenase; Provisional
Probab=89.64 E-value=0.39 Score=31.77 Aligned_cols=46 Identities=11% Similarity=-0.072 Sum_probs=34.2
Q ss_pred cee-eeHHHHHHHHHHHHhhhhccccccceEEecC-CCcccHHHHHHHHHHH
Q psy16546 18 RDY-IHVMDLAVGHVAALNKLQGEHLKIKFYNLGT-GQGTSVLQLLRTFERV 67 (111)
Q Consensus 18 r~~-v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~-~~~~s~~e~~~~i~~~ 67 (111)
+.+ ++.+|++++++.+++.+ .. ...|++++ +..++..++.+.+.+.
T Consensus 214 ~~~~~~p~dva~~~~~l~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (275)
T PRK08263 214 RSVDGDPEAAAEALLKLVDAE--NP--PLRLFLGSGVLDLAKADYERRLATW 261 (275)
T ss_pred ccCCCCHHHHHHHHHHHHcCC--CC--CeEEEeCchHHHHHHHHHHHHHHHH
Confidence 456 89999999999999975 33 33455554 4678888988888774
No 91
>PRK12829 short chain dehydrogenase; Provisional
Probab=89.10 E-value=0.48 Score=30.90 Aligned_cols=36 Identities=6% Similarity=-0.087 Sum_probs=26.7
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG 54 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~ 54 (111)
+.+++++|+|+++..++....... .++.|+++++..
T Consensus 227 ~~~~~~~d~a~~~~~l~~~~~~~~-~g~~~~i~~g~~ 262 (264)
T PRK12829 227 GRMVEPEDIAATALFLASPAARYI-TGQAISVDGNVE 262 (264)
T ss_pred CCCCCHHHHHHHHHHHcCccccCc-cCcEEEeCCCcc
Confidence 358999999999998886432233 577899987754
No 92
>PRK09135 pteridine reductase; Provisional
Probab=88.68 E-value=0.48 Score=30.51 Aligned_cols=35 Identities=11% Similarity=-0.033 Sum_probs=25.8
Q ss_pred eeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546 20 YIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS 56 (111)
Q Consensus 20 ~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s 56 (111)
+.+++|+|+++..++... ... .+++||++++..++
T Consensus 214 ~~~~~d~a~~~~~~~~~~-~~~-~g~~~~i~~g~~~~ 248 (249)
T PRK09135 214 IGTPEDIAEAVRFLLADA-SFI-TGQILAVDGGRSLT 248 (249)
T ss_pred CcCHHHHHHHHHHHcCcc-ccc-cCcEEEECCCeecc
Confidence 457899999997666542 134 68899999987654
No 93
>PRK06914 short chain dehydrogenase; Provisional
Probab=88.46 E-value=0.34 Score=32.02 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=28.9
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHH
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVL 58 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~ 58 (111)
+.+++++|+|++++.+++++ . ....|+++++..+++.
T Consensus 224 ~~~~~~~dva~~~~~~~~~~--~--~~~~~~~~~~~~~~~~ 260 (280)
T PRK06914 224 DTFGNPIDVANLIVEIAESK--R--PKLRYPIGKGVKLMIL 260 (280)
T ss_pred hccCCHHHHHHHHHHHHcCC--C--CCcccccCCchHHHHH
Confidence 45789999999999999986 2 3467999877766554
No 94
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=86.32 E-value=0.96 Score=29.13 Aligned_cols=35 Identities=9% Similarity=-0.091 Sum_probs=26.5
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ 53 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~ 53 (111)
..+++++|+|+++..++....... .+++|++.+|.
T Consensus 213 ~~~~~~~dva~~~~~l~~~~~~~~-~g~~~~~~~g~ 247 (251)
T PRK12826 213 GRLGEPEDIAAAVLFLASDEARYI-TGQTLPVDGGA 247 (251)
T ss_pred CCCcCHHHHHHHHHHHhCccccCc-CCcEEEECCCc
Confidence 357999999999999887652223 57899988654
No 95
>PRK05876 short chain dehydrogenase; Provisional
Probab=85.50 E-value=2.5 Score=28.11 Aligned_cols=47 Identities=26% Similarity=0.239 Sum_probs=31.5
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHh
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVT 68 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~ 68 (111)
++...+++++++|+|++++.++++. +.|.+. ...+..++.+...+..
T Consensus 216 ~~~~~~~~~~~~dva~~~~~ai~~~-------~~~~~~--~~~~~~~~~~~~~~~~ 262 (275)
T PRK05876 216 PLPLQDDNLGVDDIAQLTADAILAN-------RLYVLP--HAASRASIRRRFERID 262 (275)
T ss_pred cccccccCCCHHHHHHHHHHHHHcC-------CeEEec--ChhhHHHHHHHHHHHH
Confidence 3345678999999999999999863 445554 2345556555555543
No 96
>PRK12828 short chain dehydrogenase; Provisional
Probab=85.27 E-value=1 Score=28.75 Aligned_cols=35 Identities=9% Similarity=-0.037 Sum_probs=26.2
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ 53 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~ 53 (111)
..|++++|+|+++..++.+..... .+..+++.++.
T Consensus 202 ~~~~~~~dva~~~~~~l~~~~~~~-~g~~~~~~g~~ 236 (239)
T PRK12828 202 SRWVTPEQIAAVIAFLLSDEAQAI-TGASIPVDGGV 236 (239)
T ss_pred hcCCCHHHHHHHHHHHhCcccccc-cceEEEecCCE
Confidence 458999999999999998652233 46788887664
No 97
>PRK12746 short chain dehydrogenase; Provisional
Probab=83.99 E-value=1.5 Score=28.47 Aligned_cols=35 Identities=11% Similarity=-0.043 Sum_probs=25.9
Q ss_pred cceeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
...+++++|+|+++..++.++.... .+++|+++++
T Consensus 217 ~~~~~~~~dva~~~~~l~~~~~~~~-~g~~~~i~~~ 251 (254)
T PRK12746 217 FGRIGQVEDIADAVAFLASSDSRWV-TGQIIDVSGG 251 (254)
T ss_pred cCCCCCHHHHHHHHHHHcCcccCCc-CCCEEEeCCC
Confidence 3467799999999998887642123 4789999865
No 98
>PRK07060 short chain dehydrogenase; Provisional
Probab=83.34 E-value=1.4 Score=28.32 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=26.3
Q ss_pred cceeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
.+.|++++|+|++++.++..+.... .++.+++.+|
T Consensus 207 ~~~~~~~~d~a~~~~~l~~~~~~~~-~G~~~~~~~g 241 (245)
T PRK07060 207 LGRFAEVDDVAAPILFLLSDAASMV-SGVSLPVDGG 241 (245)
T ss_pred CCCCCCHHHHHHHHHHHcCcccCCc-cCcEEeECCC
Confidence 3568999999999999998653233 5777877654
No 99
>PRK07774 short chain dehydrogenase; Provisional
Probab=83.24 E-value=1.7 Score=28.12 Aligned_cols=35 Identities=17% Similarity=-0.012 Sum_probs=26.7
Q ss_pred eeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc
Q psy16546 20 YIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT 55 (111)
Q Consensus 20 ~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~ 55 (111)
+.+++|+|++++.++....... .+++||++++..+
T Consensus 214 ~~~~~d~a~~~~~~~~~~~~~~-~g~~~~v~~g~~~ 248 (250)
T PRK07774 214 MGTPEDLVGMCLFLLSDEASWI-TGQIFNVDGGQII 248 (250)
T ss_pred CcCHHHHHHHHHHHhChhhhCc-CCCEEEECCCeec
Confidence 5678999999999988652224 5789999987654
No 100
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=81.80 E-value=1.7 Score=27.76 Aligned_cols=35 Identities=6% Similarity=-0.111 Sum_probs=26.4
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ 53 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~ 53 (111)
+.+++.+|+|+++..++....... .+++|++++|.
T Consensus 210 ~~~~~~~dva~~~~~~~~~~~~~~-~g~~~~~~gg~ 244 (246)
T PRK05653 210 GRLGQPEEVANAVAFLASDAASYI-TGQVIPVNGGM 244 (246)
T ss_pred CCCcCHHHHHHHHHHHcCchhcCc-cCCEEEeCCCe
Confidence 567888999999999987542233 57889988764
No 101
>PRK09134 short chain dehydrogenase; Provisional
Probab=81.43 E-value=1.6 Score=28.50 Aligned_cols=36 Identities=14% Similarity=0.007 Sum_probs=27.8
Q ss_pred eeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHH
Q psy16546 20 YIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVL 58 (111)
Q Consensus 20 ~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~ 58 (111)
..+++|+|++++.+++++ .. .++.|++.++..++++
T Consensus 214 ~~~~~d~a~~~~~~~~~~--~~-~g~~~~i~gg~~~~~~ 249 (258)
T PRK09134 214 GSTPEEIAAAVRYLLDAP--SV-TGQMIAVDGGQHLAWL 249 (258)
T ss_pred CcCHHHHHHHHHHHhcCC--Cc-CCCEEEECCCeecccc
Confidence 477999999999999865 44 5778888877665554
No 102
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.09 E-value=3 Score=26.99 Aligned_cols=37 Identities=11% Similarity=-0.077 Sum_probs=27.0
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT 55 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~ 55 (111)
+.|.+..|+++++..++....... .+..|++.++...
T Consensus 217 ~~~~~~~d~a~~i~~l~~~~~~~~-~G~~~~i~gg~~~ 253 (256)
T PRK12745 217 PRWGEPEDVARAVAALASGDLPYS-TGQAIHVDGGLSI 253 (256)
T ss_pred CCCcCHHHHHHHHHHHhCCccccc-CCCEEEECCCeec
Confidence 467899999999998886542223 5789999877543
No 103
>PRK12939 short chain dehydrogenase; Provisional
Probab=77.94 E-value=3.3 Score=26.63 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=27.6
Q ss_pred CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
...+.+++++|+|++++.++....... .|+.+.+.++
T Consensus 210 ~~~~~~~~~~dva~~~~~l~~~~~~~~-~G~~i~~~gg 246 (250)
T PRK12939 210 RALERLQVPDDVAGAVLFLLSDAARFV-TGQLLPVNGG 246 (250)
T ss_pred CCCCCCCCHHHHHHHHHHHhCccccCc-cCcEEEECCC
Confidence 345678999999999999998653234 5677777765
No 104
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=77.71 E-value=3.1 Score=27.06 Aligned_cols=39 Identities=13% Similarity=-0.009 Sum_probs=28.4
Q ss_pred cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546 17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS 56 (111)
Q Consensus 17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s 56 (111)
.+.|.+.+|+|++++.++....... .+.++++.++...|
T Consensus 216 ~~~~~~~~dva~~~~~l~~~~~~~~-~G~~i~~~gg~~~~ 254 (255)
T PRK07523 216 AGRWGKVEELVGACVFLASDASSFV-NGHVLYVDGGITAS 254 (255)
T ss_pred CCCCcCHHHHHHHHHHHcCchhcCc-cCcEEEECCCeecc
Confidence 3457889999999999987642233 46788988776554
No 105
>PRK08219 short chain dehydrogenase; Provisional
Probab=77.53 E-value=2 Score=27.26 Aligned_cols=30 Identities=10% Similarity=0.036 Sum_probs=23.3
Q ss_pred cceeeeHHHHHHHHHHHHhhhhccccccceEEec
Q psy16546 17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLG 50 (111)
Q Consensus 17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~ 50 (111)
.+.|++++|+|++++.+++++ . .+.+|++.
T Consensus 192 ~~~~~~~~dva~~~~~~l~~~---~-~~~~~~~~ 221 (227)
T PRK08219 192 PERYLRPETVAKAVRFAVDAP---P-DAHITEVV 221 (227)
T ss_pred CCCCCCHHHHHHHHHHHHcCC---C-CCccceEE
Confidence 356899999999999999875 2 45666654
No 106
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.10 E-value=3.8 Score=26.37 Aligned_cols=36 Identities=8% Similarity=-0.107 Sum_probs=24.7
Q ss_pred cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546 17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ 53 (111)
Q Consensus 17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~ 53 (111)
...+++++|+|++++.++....... .+..+.+.++.
T Consensus 213 ~~~~~~~~dva~~~~~l~~~~~~~~-~g~~~~~~gg~ 248 (251)
T PRK07231 213 LGRLGTPEDIANAALFLASDEASWI-TGVTLVVDGGR 248 (251)
T ss_pred CCCCcCHHHHHHHHHHHhCccccCC-CCCeEEECCCc
Confidence 4567899999999999997652222 35566666543
No 107
>PRK06701 short chain dehydrogenase; Provisional
Probab=72.85 E-value=4.6 Score=27.11 Aligned_cols=38 Identities=11% Similarity=-0.087 Sum_probs=28.0
Q ss_pred ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546 16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG 54 (111)
Q Consensus 16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~ 54 (111)
..+.+.+++|+|++++.++....... .+.++++.++..
T Consensus 250 ~~~~~~~~~dva~~~~~ll~~~~~~~-~G~~i~idgg~~ 287 (290)
T PRK06701 250 PMQRPGQPEELAPAYVFLASPDSSYI-TGQMLHVNGGVI 287 (290)
T ss_pred CcCCCcCHHHHHHHHHHHcCcccCCc-cCcEEEeCCCcc
Confidence 44678999999999999988653234 567888876643
No 108
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.99 E-value=4.6 Score=26.06 Aligned_cols=35 Identities=9% Similarity=-0.019 Sum_probs=26.0
Q ss_pred eeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546 19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG 54 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~ 54 (111)
.+++.+|+|++++.++.++.... .++.+++.++..
T Consensus 213 ~~~~~~dva~~~~~~~~~~~~~~-~g~~~~~~gg~~ 247 (250)
T PRK08063 213 RMVEPEDVANAVLFLCSPEADMI-RGQTIIVDGGRS 247 (250)
T ss_pred CCcCHHHHHHHHHHHcCchhcCc-cCCEEEECCCee
Confidence 47899999999999987653223 577888876643
No 109
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=71.88 E-value=5.3 Score=25.45 Aligned_cols=33 Identities=6% Similarity=-0.060 Sum_probs=23.8
Q ss_pred eeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
-+.+++|++++++.++....... .+++||++++
T Consensus 205 ~~~~~~~~a~~~~~~~~~~~~~~-~g~~~~~~~g 237 (239)
T TIGR01830 205 RFGTPEEVANAVAFLASDEASYI-TGQVIHVDGG 237 (239)
T ss_pred CCcCHHHHHHHHHHHhCcccCCc-CCCEEEeCCC
Confidence 36789999999998885432233 5779998754
No 110
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=71.49 E-value=5.9 Score=25.29 Aligned_cols=34 Identities=6% Similarity=-0.093 Sum_probs=25.1
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
+.+.++.|+++++..++....... .++.|+++++
T Consensus 211 ~~~~~~~~va~~~~~l~~~~~~~~-~g~~~~i~~~ 244 (248)
T PRK05557 211 GRLGQPEEIASAVAFLASDEAAYI-TGQTLHVNGG 244 (248)
T ss_pred CCCcCHHHHHHHHHHHcCcccCCc-cccEEEecCC
Confidence 457899999999988876532234 5678999865
No 111
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.18 E-value=8.5 Score=24.71 Aligned_cols=35 Identities=6% Similarity=-0.074 Sum_probs=26.7
Q ss_pred ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546 16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ 53 (111)
Q Consensus 16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~ 53 (111)
..+.+.+.+|+|+++..++... .. .+++|+++++.
T Consensus 217 ~~~~~~~~~~~a~~~~~l~~~~--~~-~g~~~~~~gg~ 251 (253)
T PRK08217 217 PVGRLGEPEEIAHTVRFIIEND--YV-TGRVLEIDGGL 251 (253)
T ss_pred CcCCCcCHHHHHHHHHHHHcCC--Cc-CCcEEEeCCCc
Confidence 3456789999999999998653 44 67899988753
No 112
>PRK07041 short chain dehydrogenase; Provisional
Probab=66.93 E-value=7.8 Score=24.64 Aligned_cols=32 Identities=9% Similarity=-0.160 Sum_probs=24.2
Q ss_pred eeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546 20 YIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG 54 (111)
Q Consensus 20 ~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~ 54 (111)
+...+|+|++++.++... .. .+++|++.++..
T Consensus 197 ~~~~~dva~~~~~l~~~~--~~-~G~~~~v~gg~~ 228 (230)
T PRK07041 197 VGQPEDVANAILFLAANG--FT-TGSTVLVDGGHA 228 (230)
T ss_pred CcCHHHHHHHHHHHhcCC--Cc-CCcEEEeCCCee
Confidence 456899999999988754 34 578888887654
No 113
>PRK06128 oxidoreductase; Provisional
Probab=66.17 E-value=8 Score=26.00 Aligned_cols=39 Identities=8% Similarity=-0.059 Sum_probs=27.7
Q ss_pred ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc
Q psy16546 16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT 55 (111)
Q Consensus 16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~ 55 (111)
..+.+.+.+|+|.+++.++.....-. .+++|++.+|..+
T Consensus 261 p~~r~~~p~dva~~~~~l~s~~~~~~-~G~~~~v~gg~~~ 299 (300)
T PRK06128 261 PMKRPGQPVEMAPLYVLLASQESSYV-TGEVFGVTGGLLL 299 (300)
T ss_pred CCCCCcCHHHHHHHHHHHhCccccCc-cCcEEeeCCCEeC
Confidence 34457789999999998887542123 4788999877554
No 114
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=66.13 E-value=22 Score=20.05 Aligned_cols=53 Identities=15% Similarity=0.076 Sum_probs=36.1
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCc
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV 72 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~ 72 (111)
+|.-++.-.-+..+++++-.+-++ ....+.+++....|..++++.+ +.+|.+.
T Consensus 6 dGvl~~g~~~ipga~e~l~~L~~~------g~~~~~lTNns~~s~~~~~~~L-~~~Gi~~ 58 (101)
T PF13344_consen 6 DGVLYNGNEPIPGAVEALDALRER------GKPVVFLTNNSSRSREEYAKKL-KKLGIPV 58 (101)
T ss_dssp TTTSEETTEE-TTHHHHHHHHHHT------TSEEEEEES-SSS-HHHHHHHH-HHTTTT-
T ss_pred ccEeEeCCCcCcCHHHHHHHHHHc------CCCEEEEeCCCCCCHHHHHHHH-HhcCcCC
Confidence 445555555677788877766555 4578889998889999999999 5588764
No 115
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=63.33 E-value=17 Score=19.87 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=13.9
Q ss_pred ceEEecCCCcccHHHHHHHHHH
Q psy16546 45 KFYNLGTGQGTSVLQLLRTFER 66 (111)
Q Consensus 45 ~~yni~~~~~~s~~e~~~~i~~ 66 (111)
..|+-|+.+.++..++++-+.+
T Consensus 37 arFhTCSae~m~a~eLv~FL~~ 58 (78)
T PF10678_consen 37 ARFHTCSAEGMTADELVDFLEE 58 (78)
T ss_pred ceEEecCCCCCCHHHHHHHHHH
Confidence 4566666666666666666554
No 116
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=62.69 E-value=9.3 Score=24.84 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=23.5
Q ss_pred eeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546 20 YIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ 53 (111)
Q Consensus 20 ~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~ 53 (111)
+.+.+|+|++++.++....... .+.+|++.+++
T Consensus 226 ~~~~~dva~~~~~l~s~~~~~~-~g~~~~v~gg~ 258 (260)
T PRK12823 226 YGTIDEQVAAILFLASDEASYI-TGTVLPVGGGD 258 (260)
T ss_pred CCCHHHHHHHHHHHcCcccccc-cCcEEeecCCC
Confidence 5678999999998886542223 56788887654
No 117
>KOG4388|consensus
Probab=61.25 E-value=12 Score=28.61 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=23.5
Q ss_pred CCCCCCccceeeeHHHHHHHHHHHHhhh
Q psy16546 10 GTEDGTGIRDYIHVMDLAVGHVAALNKL 37 (111)
Q Consensus 10 ~~~~g~~~r~~v~v~D~a~a~~~~~~~~ 37 (111)
.-+.||.+|++||+-|+|-+++.-+.+.
T Consensus 119 e~TPgNGYRSlI~~~~~claH~~s~~~~ 146 (880)
T KOG4388|consen 119 EETPGNGYRSLIHTARCCLAHLLSKSRY 146 (880)
T ss_pred CCCCCCceeeehhhHHHHHHHHHHHHHH
Confidence 3467899999999999999998777654
No 118
>PRK06138 short chain dehydrogenase; Provisional
Probab=60.78 E-value=11 Score=24.18 Aligned_cols=33 Identities=6% Similarity=-0.063 Sum_probs=24.0
Q ss_pred eeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
.|++++|++++++.++.++.... .+..+.+.++
T Consensus 216 ~~~~~~d~a~~~~~l~~~~~~~~-~g~~~~~~~g 248 (252)
T PRK06138 216 RFGTAEEVAQAALFLASDESSFA-TGTTLVVDGG 248 (252)
T ss_pred CCcCHHHHHHHHHHHcCchhcCc-cCCEEEECCC
Confidence 48899999999999998763233 4566666644
No 119
>PLN02253 xanthoxin dehydrogenase
Probab=60.73 E-value=7.9 Score=25.57 Aligned_cols=36 Identities=11% Similarity=-0.100 Sum_probs=25.4
Q ss_pred eeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc
Q psy16546 20 YIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS 56 (111)
Q Consensus 20 ~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s 56 (111)
+++.+|+|++++.++.....-. .+..+++.+|...+
T Consensus 237 ~~~~~dva~~~~~l~s~~~~~i-~G~~i~vdgG~~~~ 272 (280)
T PLN02253 237 ELTVDDVANAVLFLASDEARYI-SGLNLMIDGGFTCT 272 (280)
T ss_pred CCCHHHHHHHHHhhcCcccccc-cCcEEEECCchhhc
Confidence 5789999999999887542223 46778887665443
No 120
>PRK06123 short chain dehydrogenase; Provisional
Probab=60.33 E-value=12 Score=23.97 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=22.6
Q ss_pred eeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 21 IHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 21 v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
.+++|++++++.++....... .+..|+++++
T Consensus 217 ~~~~d~a~~~~~l~~~~~~~~-~g~~~~~~gg 247 (248)
T PRK06123 217 GTAEEVARAILWLLSDEASYT-TGTFIDVSGG 247 (248)
T ss_pred cCHHHHHHHHHHHhCccccCc-cCCEEeecCC
Confidence 478999999999887542123 5778888754
No 121
>PF08338 DUF1731: Domain of unknown function (DUF1731); InterPro: IPR013549 This domain of unknown function appears towards the C terminus of proteins of the NAD dependent epimerase/dehydratase family (IPR001509 from INTERPRO) in bacteria, eukaryotes and archaea. Many of the proteins in which it is found are involved in cell-division inhibition. ; PDB: 3OH8_A.
Probab=60.29 E-value=5.7 Score=19.40 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=12.7
Q ss_pred hccCHHHHHHhhCCCccc-chHhhh
Q psy16546 87 MYANTDLAQRELGWSARC-TVEKMC 110 (111)
Q Consensus 87 ~~~d~~k~~~~lg~~p~~-~~~~~l 110 (111)
..+.++|+.+ .||+..+ ++++++
T Consensus 21 q~v~P~kL~~-~GF~F~~p~l~~AL 44 (48)
T PF08338_consen 21 QRVSPKKLLE-AGFQFRYPTLEEAL 44 (48)
T ss_dssp EEE--HHHHH-TT---S-SSHHHHH
T ss_pred CeecChHHHH-CCCcccCCCHHHHH
Confidence 3457888888 7998877 688776
No 122
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=58.85 E-value=16 Score=23.49 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=24.6
Q ss_pred ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
..+.+++++|+|++++.++....... .+.+..+.+|
T Consensus 212 ~~~~~~~~~dva~~~~~l~~~~~~~~-~g~~i~~~gg 247 (252)
T PRK08220 212 PLGKIARPQEIANAVLFLASDLASHI-TLQDIVVDGG 247 (252)
T ss_pred CCcccCCHHHHHHHHHHHhcchhcCc-cCcEEEECCC
Confidence 34578999999999999887542233 4555555544
No 123
>PRK07890 short chain dehydrogenase; Provisional
Probab=53.90 E-value=22 Score=22.93 Aligned_cols=34 Identities=9% Similarity=0.027 Sum_probs=22.9
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
..+.+++|+|++++.++....... .++++.+.++
T Consensus 221 ~~~~~~~dva~a~~~l~~~~~~~~-~G~~i~~~gg 254 (258)
T PRK07890 221 KRLPTDDEVASAVLFLASDLARAI-TGQTLDVNCG 254 (258)
T ss_pred cccCCHHHHHHHHHHHcCHhhhCc-cCcEEEeCCc
Confidence 457788999999998887542233 4555655544
No 124
>PRK09186 flagellin modification protein A; Provisional
Probab=52.79 E-value=11 Score=24.38 Aligned_cols=34 Identities=12% Similarity=-0.001 Sum_probs=23.7
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
..+++.+|+|++++.++....... .+..+.+.+|
T Consensus 220 ~~~~~~~dva~~~~~l~~~~~~~~-~g~~~~~~~g 253 (256)
T PRK09186 220 KGMLDPDDICGTLVFLLSDQSKYI-TGQNIIVDDG 253 (256)
T ss_pred cCCCCHHHhhhhHhheeccccccc-cCceEEecCC
Confidence 357999999999999997542123 4566666654
No 125
>PRK06841 short chain dehydrogenase; Provisional
Probab=52.45 E-value=20 Score=23.17 Aligned_cols=36 Identities=6% Similarity=-0.039 Sum_probs=25.3
Q ss_pred cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546 17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ 53 (111)
Q Consensus 17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~ 53 (111)
.+.+.+.+|+|++++.++....... .|.++.+.++.
T Consensus 217 ~~~~~~~~~va~~~~~l~~~~~~~~-~G~~i~~dgg~ 252 (255)
T PRK06841 217 AGRFAYPEEIAAAALFLASDAAAMI-TGENLVIDGGY 252 (255)
T ss_pred CCCCcCHHHHHHHHHHHcCccccCc-cCCEEEECCCc
Confidence 3467899999999999987653233 46677776553
No 126
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=51.64 E-value=55 Score=21.84 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=46.4
Q ss_pred CCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC-cccHHHHHHHHHHHhCC
Q psy16546 10 GTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ-GTSVLQLLRTFERVTGK 70 (111)
Q Consensus 10 ~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~-~~s~~e~~~~i~~~~~~ 70 (111)
....|.....+-|.+|-++-++.=++.. +.+...|++|. +++..+.+++|+++...
T Consensus 75 ~v~pGGtlfe~a~~~~kvdeyl~e~~~l-----Gfe~iEIS~G~i~m~~eek~~lIe~a~d~ 131 (258)
T COG1809 75 YVFPGGTLFEIAYSQDKVDEYLNEAKEL-----GFEAIEISNGTIPMSTEEKCRLIERAVDE 131 (258)
T ss_pred eecCCceEEEeehhcccHHHHHHHHHHc-----CccEEEecCCeeecchHHHHHHHHHHHhc
Confidence 3445668889999999999998887775 77899999885 79999999999998753
No 127
>PF11112 PyocinActivator: Pyocin activator protein PrtN
Probab=51.24 E-value=24 Score=19.07 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=14.7
Q ss_pred CCCccceeeeHHHHHHHHHHH
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAA 33 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~ 33 (111)
+.+----+|||.|+|..+-.-
T Consensus 51 ~SqKs~~~V~v~dLA~yiD~~ 71 (76)
T PF11112_consen 51 DSQKSPKFVHVQDLAAYIDKR 71 (76)
T ss_pred CcccCCceeeHHHHHHHHHHH
Confidence 444344699999999876543
No 128
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=49.93 E-value=21 Score=27.32 Aligned_cols=38 Identities=11% Similarity=-0.006 Sum_probs=26.7
Q ss_pred ccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546 16 GIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG 54 (111)
Q Consensus 16 ~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~ 54 (111)
..+.+++.+|+|+++..++....... -+.++++.+|..
T Consensus 634 ~l~r~v~peDVA~av~~L~s~~~~~~-TG~~i~vDGG~~ 671 (676)
T TIGR02632 634 LLKRHIFPADIAEAVFFLASSKSEKT-TGCIITVDGGVP 671 (676)
T ss_pred CcCCCcCHHHHHHHHHHHhCCcccCC-cCcEEEECCCch
Confidence 33456899999999998876542233 467888877644
No 129
>PRK08017 oxidoreductase; Provisional
Probab=49.70 E-value=9.1 Score=24.75 Aligned_cols=23 Identities=13% Similarity=-0.083 Sum_probs=19.5
Q ss_pred CccceeeeHHHHHHHHHHHHhhh
Q psy16546 15 TGIRDYIHVMDLAVGHVAALNKL 37 (111)
Q Consensus 15 ~~~r~~v~v~D~a~a~~~~~~~~ 37 (111)
...|.+++++|+++++..+++++
T Consensus 201 ~~~~~~~~~~d~a~~~~~~~~~~ 223 (256)
T PRK08017 201 IAARFTLGPEAVVPKLRHALESP 223 (256)
T ss_pred HHhhcCCCHHHHHHHHHHHHhCC
Confidence 34567899999999999999875
No 130
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=49.62 E-value=55 Score=19.97 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=23.2
Q ss_pred ccceEEecCCCcccHHHHHHHHHHHhCCCccc
Q psy16546 43 KIKFYNLGTGQGTSVLQLLRTFERVTGKPVPY 74 (111)
Q Consensus 43 ~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~ 74 (111)
.|+...+.+...++..++++.|.+ .|+++-+
T Consensus 51 ~G~~l~l~S~R~~~~~evi~~I~~-~G~PviV 81 (138)
T PF04312_consen 51 DGELLDLKSSRNMSRSEVIEWISE-YGKPVIV 81 (138)
T ss_pred CCcEEEEEeecCCCHHHHHHHHHH-cCCEEEE
Confidence 567777888888899999988887 4555433
No 131
>PRK12937 short chain dehydrogenase; Provisional
Probab=48.11 E-value=23 Score=22.67 Aligned_cols=33 Identities=6% Similarity=-0.119 Sum_probs=23.3
Q ss_pred eeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
-+.+.+|+++++..++....... .+..+++.++
T Consensus 211 ~~~~~~d~a~~~~~l~~~~~~~~-~g~~~~~~~g 243 (245)
T PRK12937 211 RLGTPEEIAAAVAFLAGPDGAWV-NGQVLRVNGG 243 (245)
T ss_pred CCCCHHHHHHHHHHHcCccccCc-cccEEEeCCC
Confidence 45688999999998887653233 4677777644
No 132
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=47.70 E-value=50 Score=18.47 Aligned_cols=51 Identities=16% Similarity=0.031 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhhc-----cccccceEEecCCCcccHHHHHHHH---HHHhCCCccceE
Q psy16546 25 DLAVGHVAALNKLQG-----EHLKIKFYNLGTGQGTSVLQLLRTF---ERVTGKPVPYIV 76 (111)
Q Consensus 25 D~a~a~~~~~~~~~~-----~~~~~~~yni~~~~~~s~~e~~~~i---~~~~~~~~~~~~ 76 (111)
.+.+|+..|+.+|.- .+ .+=..|+.++..+++.|+-+++ .+.++.+..+.+
T Consensus 15 r~~~Av~~Al~spLl~~~i~~A-~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~ 73 (95)
T PF12327_consen 15 RAEEAVEQALNSPLLDVDIKGA-KGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIW 73 (95)
T ss_dssp HHHHHHHHHHTSTTSTS-GGG--SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEE
T ss_pred HHHHHHHHHHhCccccCChHHh-ceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEE
Confidence 367788888887621 23 4567899988888988877664 455565555443
No 133
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=45.97 E-value=47 Score=23.86 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=47.1
Q ss_pred CCCCCCCccceeeeHHHHHHHHHHHHhhhh--ccccccceEEecCCCc---------ccHHHHHHHHHHHhCC---Cccc
Q psy16546 9 YGTEDGTGIRDYIHVMDLAVGHVAALNKLQ--GEHLKIKFYNLGTGQG---------TSVLQLLRTFERVTGK---PVPY 74 (111)
Q Consensus 9 ~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~--~~~~~~~~yni~~~~~---------~s~~e~~~~i~~~~~~---~~~~ 74 (111)
+.+.-|.|..|+-...++++.+..++..-. .+. .-+..|+++|-+ ..+.++++.+.+.++. .+++
T Consensus 194 lh~HiGSq~~d~~~~~~a~~~~~~~~~~~~~~~g~-~l~~inlGGG~gi~Y~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 272 (394)
T COG0019 194 LHFHIGSQITDLDPFEEALAKVEELFGRLAEELGI-QLEWLNLGGGLGITYEDEYDPPDLAAYAKALKEAFGEYAEDVEL 272 (394)
T ss_pred EEEeecCCCCCcHHHHHHHHHHHHHHHHHHHhhCC-CceEEEecCCcCcCCCCCCCCcCHHHHHHHHHHHHhhccCCCeE
Confidence 345567888889888898888888777541 112 236677777653 4556699999998884 3555
Q ss_pred eEccC
Q psy16546 75 IVEAR 79 (111)
Q Consensus 75 ~~~~~ 79 (111)
...|-
T Consensus 273 ~~EPG 277 (394)
T COG0019 273 ILEPG 277 (394)
T ss_pred EEccc
Confidence 55553
No 134
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=45.54 E-value=30 Score=22.18 Aligned_cols=33 Identities=9% Similarity=-0.118 Sum_probs=23.1
Q ss_pred eeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
.+...+|+|+++..++....... .+++++++++
T Consensus 215 ~~~~~~dva~~~~~l~~~~~~~~-~g~~~~~~~g 247 (250)
T TIGR03206 215 RLGQPDDLPGAILFFSSDDASFI-TGQVLSVSGG 247 (250)
T ss_pred CCcCHHHHHHHHHHHcCcccCCC-cCcEEEeCCC
Confidence 35678899999988877653233 4678888755
No 135
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=44.79 E-value=29 Score=22.13 Aligned_cols=36 Identities=8% Similarity=-0.018 Sum_probs=25.1
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG 54 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~ 54 (111)
+.+...+|+++++..++....... .+++++++++..
T Consensus 208 ~~~~~~~~va~~~~~l~~~~~~~~-~G~~~~~~~g~~ 243 (245)
T PRK12824 208 KRLGTPEEIAAAVAFLVSEAAGFI-TGETISINGGLY 243 (245)
T ss_pred CCCCCHHHHHHHHHHHcCccccCc-cCcEEEECCCee
Confidence 456788899999888876532223 578888887653
No 136
>PRK06181 short chain dehydrogenase; Provisional
Probab=44.22 E-value=20 Score=23.32 Aligned_cols=21 Identities=10% Similarity=0.078 Sum_probs=18.1
Q ss_pred cceeeeHHHHHHHHHHHHhhh
Q psy16546 17 IRDYIHVMDLAVGHVAALNKL 37 (111)
Q Consensus 17 ~r~~v~v~D~a~a~~~~~~~~ 37 (111)
.+.+++++|+|++++.+++..
T Consensus 206 ~~~~~~~~dva~~i~~~~~~~ 226 (263)
T PRK06181 206 ESKIMSAEECAEAILPAIARR 226 (263)
T ss_pred ccCCCCHHHHHHHHHHHhhCC
Confidence 357999999999999999864
No 137
>PRK12744 short chain dehydrogenase; Provisional
Probab=43.84 E-value=29 Score=22.50 Aligned_cols=34 Identities=6% Similarity=-0.204 Sum_probs=25.2
Q ss_pred eeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546 19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG 54 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~ 54 (111)
.+.+.+|+|+++..++... ... .++++++.++..
T Consensus 222 ~~~~~~dva~~~~~l~~~~-~~~-~g~~~~~~gg~~ 255 (257)
T PRK12744 222 GLTDIEDIVPFIRFLVTDG-WWI-TGQTILINGGYT 255 (257)
T ss_pred CCCCHHHHHHHHHHhhccc-cee-ecceEeecCCcc
Confidence 5789999999999998852 122 467888886643
No 138
>PRK08628 short chain dehydrogenase; Provisional
Probab=41.96 E-value=41 Score=21.75 Aligned_cols=39 Identities=10% Similarity=0.040 Sum_probs=25.0
Q ss_pred eeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHH
Q psy16546 19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQ 59 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e 59 (111)
.++..+|+|++++.++....... .+..|.+.++ ...+++
T Consensus 217 ~~~~~~dva~~~~~l~~~~~~~~-~g~~~~~~gg-~~~~~~ 255 (258)
T PRK08628 217 RMTTAEEIADTAVFLLSERSSHT-TGQWLFVDGG-YVHLDR 255 (258)
T ss_pred cCCCHHHHHHHHHHHhChhhccc-cCceEEecCC-cccccc
Confidence 46788999999998887642233 4566766544 334433
No 139
>PRK12827 short chain dehydrogenase; Provisional
Probab=41.85 E-value=36 Score=21.69 Aligned_cols=32 Identities=6% Similarity=-0.114 Sum_probs=22.6
Q ss_pred eeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 20 YIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 20 ~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
+...+|+|++++.++....... .++.+++.++
T Consensus 216 ~~~~~~va~~~~~l~~~~~~~~-~g~~~~~~~g 247 (249)
T PRK12827 216 LGEPDEVAALVAFLVSDAASYV-TGQVIPVDGG 247 (249)
T ss_pred CcCHHHHHHHHHHHcCcccCCc-cCcEEEeCCC
Confidence 4588999999998886542233 4677777654
No 140
>PRK06198 short chain dehydrogenase; Provisional
Probab=41.50 E-value=40 Score=21.79 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=23.8
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
+.+++.+|++++++.++....... .++++++.++
T Consensus 220 ~~~~~~~~~a~~~~~l~~~~~~~~-~G~~~~~~~~ 253 (260)
T PRK06198 220 GRLLDPDEVARAVAFLLSDESGLM-TGSVIDFDQS 253 (260)
T ss_pred cCCcCHHHHHHHHHHHcChhhCCc-cCceEeECCc
Confidence 346789999999998886553223 5677777654
No 141
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=40.46 E-value=41 Score=18.68 Aligned_cols=43 Identities=7% Similarity=0.002 Sum_probs=28.0
Q ss_pred eHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHH
Q psy16546 22 HVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERV 67 (111)
Q Consensus 22 ~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~ 67 (111)
+.++++.-+..+.+|| .. ..=+|+-.++..-|-..+++.|.+.
T Consensus 32 ~~d~lv~hF~~iteHP--~g-SDLIfYP~~~~edsPegIv~~vKeW 74 (85)
T PF01320_consen 32 EHDELVDHFEKITEHP--DG-SDLIFYPEDGREDSPEGIVKEVKEW 74 (85)
T ss_dssp HHHHHHHHHHHHH--T--TT-THHHHS-STTSTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCC--CC-CceeeeCCCCCCCCHHHHHHHHHHH
Confidence 5677788888888887 33 3447776666677888888887754
No 142
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=40.09 E-value=94 Score=19.78 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=29.5
Q ss_pred HHHHHHHHhhhhccccccceEEe--cCCCcccHHHHHHHHHHHhCCCccceEc
Q psy16546 27 AVGHVAALNKLQGEHLKIKFYNL--GTGQGTSVLQLLRTFERVTGKPVPYIVE 77 (111)
Q Consensus 27 a~a~~~~~~~~~~~~~~~~~yni--~~~~~~s~~e~~~~i~~~~~~~~~~~~~ 77 (111)
.+++..+.++- .++-... +++.++|-.|++++|.++-.-++-+++.
T Consensus 13 ~ravE~aa~~i-----GgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfD 60 (180)
T PF14097_consen 13 KRAVEIAAKNI-----GGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFD 60 (180)
T ss_pred HHHHHHHHHHh-----CcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEe
Confidence 34555555553 3443333 4556799999999999987766555554
No 143
>PRK06180 short chain dehydrogenase; Provisional
Probab=39.75 E-value=41 Score=22.20 Aligned_cols=19 Identities=16% Similarity=-0.083 Sum_probs=14.7
Q ss_pred eeeeHHHHHHHHHHHHhhh
Q psy16546 19 DYIHVMDLAVGHVAALNKL 37 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~ 37 (111)
.+..++|+|++++.+++.+
T Consensus 220 ~~~~~~dva~~~~~~l~~~ 238 (277)
T PRK06180 220 QPGDPAKAAQAILAAVESD 238 (277)
T ss_pred CCCCHHHHHHHHHHHHcCC
Confidence 3567888888888888765
No 144
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=38.91 E-value=41 Score=21.40 Aligned_cols=34 Identities=6% Similarity=-0.129 Sum_probs=23.7
Q ss_pred eeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546 19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ 53 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~ 53 (111)
.+....|+++++..++....... .++.+++.++.
T Consensus 209 ~~~~~~~ia~~~~~l~~~~~~~~-~G~~~~~~~g~ 242 (245)
T PRK12936 209 RMGTGAEVASAVAYLASSEAAYV-TGQTIHVNGGM 242 (245)
T ss_pred CCcCHHHHHHHHHHHcCccccCc-CCCEEEECCCc
Confidence 36678999999988876542223 46788888663
No 145
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=37.78 E-value=50 Score=15.69 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=15.3
Q ss_pred CCCccceeeeHHHHHHHHH
Q psy16546 13 DGTGIRDYIHVMDLAVGHV 31 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~ 31 (111)
+.+....+++..|+.+++.
T Consensus 38 ~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 38 EDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp TTSBEEEEEEHHHHHHHHH
T ss_pred cCCEEEEEEEHHHHHhhhh
Confidence 5677788999999988764
No 146
>PRK06523 short chain dehydrogenase; Provisional
Probab=37.67 E-value=44 Score=21.67 Aligned_cols=35 Identities=9% Similarity=-0.125 Sum_probs=22.1
Q ss_pred eeeHHHHHHHHHHHHhhhhccccccceEEecCCCcc
Q psy16546 20 YIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGT 55 (111)
Q Consensus 20 ~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~ 55 (111)
+...+|+++++..++....... .+..+.+.++...
T Consensus 224 ~~~~~~va~~~~~l~s~~~~~~-~G~~~~vdgg~~~ 258 (260)
T PRK06523 224 PAEPEEVAELIAFLASDRAASI-TGTEYVIDGGTVP 258 (260)
T ss_pred CCCHHHHHHHHHHHhCcccccc-cCceEEecCCccC
Confidence 4567888888887776532233 4567777765543
No 147
>PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A ....
Probab=36.94 E-value=42 Score=19.20 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=15.4
Q ss_pred CCccceeeeHHHHHH----HHHHHHhhh
Q psy16546 14 GTGIRDYIHVMDLAV----GHVAALNKL 37 (111)
Q Consensus 14 g~~~r~~v~v~D~a~----a~~~~~~~~ 37 (111)
|....+|+|-+|+.. .+..++.+.
T Consensus 35 G~s~y~~~H~~D~~~~~~~~~~~~~~~g 62 (111)
T PF14598_consen 35 GRSIYDFVHPDDLQRVLKQHHREVLQKG 62 (111)
T ss_dssp TSBGGGGBSCCTHHHHHHHHHHHHHHHS
T ss_pred CCchHHhCCHhhhhhHHHHHHHHHhhCC
Confidence 367778888888876 344444443
No 148
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=36.32 E-value=49 Score=21.22 Aligned_cols=20 Identities=10% Similarity=-0.097 Sum_probs=16.5
Q ss_pred ceeeeHHHHHHHHHHHHhhh
Q psy16546 18 RDYIHVMDLAVGHVAALNKL 37 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~ 37 (111)
+.|+..+|+|++++.++...
T Consensus 211 ~~~~~~~dva~~~~~l~s~~ 230 (248)
T TIGR01832 211 GRWGTPDDIGGPAVFLASSA 230 (248)
T ss_pred CCCcCHHHHHHHHHHHcCcc
Confidence 45888999999999888754
No 149
>KOG1342|consensus
Probab=36.29 E-value=48 Score=23.90 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=17.2
Q ss_pred eeeeHHHHHHHHHHHHhhh
Q psy16546 19 DYIHVMDLAVGHVAALNKL 37 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~ 37 (111)
.|+||.|++-+++.+++.-
T Consensus 147 GFCYvNDIVL~ILeLlK~h 165 (425)
T KOG1342|consen 147 GFCYVNDIVLGILELLKYH 165 (425)
T ss_pred cceeehHHHHHHHHHHHhC
Confidence 5999999999999999863
No 150
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=36.26 E-value=78 Score=17.40 Aligned_cols=27 Identities=7% Similarity=0.044 Sum_probs=22.2
Q ss_pred ceEEecCCCcccHHHHHHHHHHHhCCC
Q psy16546 45 KFYNLGTGQGTSVLQLLRTFERVTGKP 71 (111)
Q Consensus 45 ~~yni~~~~~~s~~e~~~~i~~~~~~~ 71 (111)
-+|.+..+...++.++.+.+++.++.+
T Consensus 12 ~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 12 QSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 356666666889999999999999876
No 151
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=35.22 E-value=47 Score=21.49 Aligned_cols=35 Identities=9% Similarity=-0.066 Sum_probs=24.3
Q ss_pred eeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546 19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG 54 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~ 54 (111)
.+...+|++++++.++....... .++++++.++..
T Consensus 217 ~~~~~~d~a~~~~~l~~~~~~~~-~G~~i~~~gg~~ 251 (255)
T PRK06113 217 RLGQPQDIANAALFLCSPAASWV-SGQILTVSGGGV 251 (255)
T ss_pred CCcCHHHHHHHHHHHcCccccCc-cCCEEEECCCcc
Confidence 36688999999998887542223 467888877643
No 152
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=34.99 E-value=80 Score=17.20 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=15.0
Q ss_pred ceEEecCCCcccHHHHHHHHHH
Q psy16546 45 KFYNLGTGQGTSVLQLLRTFER 66 (111)
Q Consensus 45 ~~yni~~~~~~s~~e~~~~i~~ 66 (111)
-.|+-|+.+.++..++++-+.+
T Consensus 35 arFhTCSa~~m~a~~Li~FL~~ 56 (77)
T TIGR03853 35 ARFHTCSAEGMTADELLQFLLK 56 (77)
T ss_pred ceEeecccccCCHHHHHHHHHH
Confidence 4677777777777777766655
No 153
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=34.27 E-value=55 Score=20.84 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=21.4
Q ss_pred eeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 21 IHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 21 v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
.+.+|++++++.++....... .+..|.+.++
T Consensus 216 ~~~~dva~~~~~~~~~~~~~~-~g~~~~~~g~ 246 (247)
T PRK09730 216 GQPEEVAQAIVWLLSDKASYV-TGSFIDLAGG 246 (247)
T ss_pred cCHHHHHHHHHhhcChhhcCc-cCcEEecCCC
Confidence 478999999998887542223 5667776653
No 154
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=33.98 E-value=1.5e+02 Score=20.15 Aligned_cols=55 Identities=15% Similarity=0.001 Sum_probs=40.7
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCcc
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP 73 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~ 73 (111)
+|.-++.---+..+++++..+-++ .-..+.++|....|-.++.+.+.+.++.+..
T Consensus 16 DGvl~~G~~~ipga~e~l~~L~~~------g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~ 70 (269)
T COG0647 16 DGVLYRGNEAIPGAAEALKRLKAA------GKPVIFLTNNSTRSREVVAARLSSLGGVDVT 70 (269)
T ss_pred cCceEeCCccCchHHHHHHHHHHc------CCeEEEEeCCCCCCHHHHHHHHHhhcCCCCC
Confidence 455566666677788887766555 4577889988888888899999997776543
No 155
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=33.80 E-value=82 Score=21.22 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=34.3
Q ss_pred cceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCccc---------HHHHHHHHHHHhCCCccceE
Q psy16546 17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTS---------VLQLLRTFERVTGKPVPYIV 76 (111)
Q Consensus 17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s---------~~e~~~~i~~~~~~~~~~~~ 76 (111)
+..|++|.++-..+...+... .+=.|.+|+++.+. +.++++.+.+..+..++.-.
T Consensus 149 ydt~~~I~~l~~~l~~~~~~~-----G~L~fylGGDNi~~v~p~~~~~~~~~~i~~V~~~~~i~lkvGI 212 (246)
T PF05165_consen 149 YDTYLEIEDLYAKLMKYLEKY-----GSLAFYLGGDNIMAVCPDLDEDDLLDAIEHVEEEVGIDLKVGI 212 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-----T---EEEETTEEEEE-TT--HHHHHHHHHHHHHHHS--EEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----CCEEEEecCceEEEECCCCCHHHHHHHHHHHHhhcCceEEEee
Confidence 346788888877777777543 45577888776544 56777777777777665544
No 156
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=33.74 E-value=85 Score=17.08 Aligned_cols=61 Identities=11% Similarity=-0.043 Sum_probs=41.3
Q ss_pred cceEEecCCCcccHHHHHHHHHHHhCCCccceEccCCCCccchhccCHHHHHHhhCCCccc
Q psy16546 44 IKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARC 104 (111)
Q Consensus 44 ~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~ 104 (111)
|+-..+-=+.++.++|+.+.+..++|.+....+......-+....-|-+|+.+.++..|..
T Consensus 9 gEKRIi~f~RPvkf~dl~~kv~~afGq~mdl~ytn~eL~iPl~~Q~DLDkAie~ld~s~~~ 69 (79)
T cd06405 9 GEKRIIQFPRPVKFKDLQQKVTTAFGQPMDLHYTNNELLIPLKNQEDLDRAIELLDRSPHM 69 (79)
T ss_pred CceEEEecCCCccHHHHHHHHHHHhCCeeeEEEecccEEEeccCHHHHHHHHHHHccCccc
Confidence 4444455568999999999999999988777665432222223334778888878776543
No 157
>KOG2889|consensus
Probab=32.90 E-value=35 Score=21.81 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=17.5
Q ss_pred CCCCCCccceeeeHHHHHHHHH
Q psy16546 10 GTEDGTGIRDYIHVMDLAVGHV 31 (111)
Q Consensus 10 ~~~~g~~~r~~v~v~D~a~a~~ 31 (111)
..-+|+..|.++|+++++.-++
T Consensus 131 r~~~~~g~~~l~ylDe~iDdLL 152 (204)
T KOG2889|consen 131 RVVNGQGNRTLMYLDEVIDDLL 152 (204)
T ss_pred hhhcCCCceeeeeHHHHHHHHh
Confidence 3447788899999999998754
No 158
>PRK08285 cobH precorrin-8X methylmutase; Reviewed
Probab=32.40 E-value=1.2e+02 Score=19.83 Aligned_cols=49 Identities=10% Similarity=0.063 Sum_probs=33.3
Q ss_pred CCccceeeeHHHHHH------------HHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHh
Q psy16546 14 GTGIRDYIHVMDLAV------------GHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVT 68 (111)
Q Consensus 14 g~~~r~~v~v~D~a~------------a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~ 68 (111)
|+...++++-.++++ ++..+.+.. .+.+|-||+ -+..+.++++++.+.-
T Consensus 91 g~~v~C~i~~~~v~~~A~~~g~TRs~aam~~a~~~~-----~~~I~vIGN-APTAL~~l~~li~~g~ 151 (208)
T PRK08285 91 DNEVICTLRDPRVPELAAELGNTRSAAALELWRPRL-----AGSVVAIGN-APTALFRLLEMLDAGA 151 (208)
T ss_pred CCcEEEECCCcchHHHHHHcCCCHHHHHHHHHHHHC-----CCCEEEEeC-CHHHHHHHHHHHHcCC
Confidence 677778877766663 444444432 355898885 4778999999987753
No 159
>PRK12747 short chain dehydrogenase; Provisional
Probab=32.15 E-value=59 Score=20.95 Aligned_cols=34 Identities=12% Similarity=-0.043 Sum_probs=22.3
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
+.+.+.+|+|+++..++....... .+..+.+.++
T Consensus 216 ~~~~~~~dva~~~~~l~s~~~~~~-~G~~i~vdgg 249 (252)
T PRK12747 216 NRLGEVEDIADTAAFLASPDSRWV-TGQLIDVSGG 249 (252)
T ss_pred cCCCCHHHHHHHHHHHcCccccCc-CCcEEEecCC
Confidence 457788999999988876532223 4566666544
No 160
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=31.34 E-value=1.5e+02 Score=19.17 Aligned_cols=49 Identities=6% Similarity=0.005 Sum_probs=37.9
Q ss_pred CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHh
Q psy16546 15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVT 68 (111)
Q Consensus 15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~ 68 (111)
...++|..-.|+|+-+..+.++. +++.+-|++++++--+|=+..+-+.+
T Consensus 68 ~rag~f~~P~eVaeRL~ei~K~~-----g~d~vRiSG~EP~l~~EHvlevIeLl 116 (228)
T COG5014 68 KRAGDFLSPEEVAERLLEISKKR-----GCDLVRISGAEPILGREHVLEVIELL 116 (228)
T ss_pred cccccccCHHHHHHHHHHHHHhc-----CCcEEEeeCCCccccHHHHHHHHHhc
Confidence 45568999999999999888876 78899999999876666555555544
No 161
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.02 E-value=65 Score=20.63 Aligned_cols=34 Identities=9% Similarity=-0.049 Sum_probs=23.8
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
+.+.+.+|+++++..++....... .|..+.+.++
T Consensus 216 ~~~~~~~~va~~~~~l~~~~~~~~-~G~~~~vdgg 249 (253)
T PRK08642 216 RKVTTPQEFADAVLFFASPWARAV-TGQNLVVDGG 249 (253)
T ss_pred CCCCCHHHHHHHHHHHcCchhcCc-cCCEEEeCCC
Confidence 457889999999998887543234 5666766654
No 162
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=30.43 E-value=1.1e+02 Score=18.08 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546 23 VMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG 54 (111)
Q Consensus 23 v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~ 54 (111)
+..+++.+..++.+ .+.+|.+++|..
T Consensus 21 i~~aa~~i~~~~~~------gg~i~~~G~G~S 46 (138)
T PF13580_consen 21 IEKAADLIAEALRN------GGRIFVCGNGHS 46 (138)
T ss_dssp HHHHHHHHHHHHHT------T--EEEEESTHH
T ss_pred HHHHHHHHHHHHHC------CCEEEEEcCchh
Confidence 45556666666655 578898888754
No 163
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.38 E-value=65 Score=20.46 Aligned_cols=34 Identities=6% Similarity=-0.124 Sum_probs=23.7
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
+.+...+|++++++.++....... .++.+++.++
T Consensus 211 ~~~~~~~~va~~~~~l~~~~~~~~-~g~~~~~~~~ 244 (247)
T PRK05565 211 GRLGKPEEIAKVVLFLASDDASYI-TGQIITVDGG 244 (247)
T ss_pred CCCCCHHHHHHHHHHHcCCccCCc-cCcEEEecCC
Confidence 346788999999998887653234 5667777654
No 164
>PF05418 Apo-VLDL-II: Apovitellenin I (Apo-VLDL-II); InterPro: IPR008404 This family consists of several avian apovitellenin I sequences. As part of the avian reproductive effort, large quantities of triglyceride-rich very-low-density lipoprotein (VLDL) particles are transported by receptor-mediated endocytosis into the female germ cells. Although the oocytes are surrounded by a layer of granulosa cells harbouring high levels of active lipoprotein lipase, non-lipolysed VLDL is transported into the yolk. This is because VLDL particles from laying chickens (Gallus gallus) are protected from lipolysis by apolipoprotein (apo)-VLDL-II, a potent dimeric lipoprotein lipase inhibitor []. Apo-VLDL-II is produced in the liver and secreted into the blood stream when induced by estrogen production in female birds.; GO: 0004857 enzyme inhibitor activity, 0006629 lipid metabolic process, 0042627 chylomicron
Probab=30.19 E-value=46 Score=17.95 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=16.4
Q ss_pred cceeeeHHHHHHHHHHHHhh
Q psy16546 17 IRDYIHVMDLAVGHVAALNK 36 (111)
Q Consensus 17 ~r~~v~v~D~a~a~~~~~~~ 36 (111)
.|||+-+.|++.+++.=.-+
T Consensus 8 RRdwlviPdaiA~YiYEavN 27 (82)
T PF05418_consen 8 RRDWLVIPDAIAAYIYEAVN 27 (82)
T ss_pred ccceeeccHHHHHHHHHHHH
Confidence 89999999999988765444
No 165
>PHA01810 hypothetical protein
Probab=30.02 E-value=41 Score=18.19 Aligned_cols=17 Identities=12% Similarity=0.368 Sum_probs=10.8
Q ss_pred HHHhhCCCcccchHhhh
Q psy16546 94 AQRELGWSARCTVEKMC 110 (111)
Q Consensus 94 ~~~~lg~~p~~~~~~~l 110 (111)
+.+.+.|.|.++++.++
T Consensus 22 fnkliqwnpaytfdnai 38 (100)
T PHA01810 22 FNKLIQWNPAYTFDNAI 38 (100)
T ss_pred HHHHHhcCcccccchHH
Confidence 34455677777776654
No 166
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=29.71 E-value=73 Score=20.54 Aligned_cols=34 Identities=9% Similarity=-0.029 Sum_probs=22.0
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
+.+++.+|++++++.++....... .+..+.+.++
T Consensus 218 ~~~~~~~~~a~~~~~l~~~~~~~~-~G~~i~~dgg 251 (256)
T PRK06124 218 GRWGRPEEIAGAAVFLASPAASYV-NGHVLAVDGG 251 (256)
T ss_pred CCCCCHHHHHHHHHHHcCcccCCc-CCCEEEECCC
Confidence 347889999999999887652222 3445555433
No 167
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=29.46 E-value=1.8e+02 Score=21.73 Aligned_cols=52 Identities=15% Similarity=0.010 Sum_probs=35.2
Q ss_pred eeeeHHHHHHHHHHHHhhhhccccccceEEecC----CCcccHHHHHHHHHHHhCCCc
Q psy16546 19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGT----GQGTSVLQLLRTFERVTGKPV 72 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~----~~~~s~~e~~~~i~~~~~~~~ 72 (111)
.|+--.|.|+++..|+..-... ...++.++. +...+..|+.+.+.+.++..+
T Consensus 286 ~hLG~~~~A~~I~~AV~~vl~~--G~~T~Dl~~~~~~gg~~sT~e~~daVi~~l~~~p 341 (473)
T TIGR02924 286 VHIGQSDIAQLIYNAWLKTLED--GVHTADIYNEKTSKQKVGTKEFAEAVTANLGKKP 341 (473)
T ss_pred HHcCCHHHHHHHHHHHHHHHHc--CCcCccccccccCCCCcCHHHHHHHHHHHhcccc
Confidence 3455567888888888765211 234566642 346799999999999998653
No 168
>PF15007 CEP44: Centrosomal spindle body, CEP44
Probab=29.22 E-value=43 Score=20.19 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=13.8
Q ss_pred HHHHHHhhCCCcccchHh
Q psy16546 91 TDLAQRELGWSARCTVEK 108 (111)
Q Consensus 91 ~~k~~~~lg~~p~~~~~~ 108 (111)
-.-++.++||+|..|..+
T Consensus 74 yk~LRdef~YkP~lT~~Q 91 (131)
T PF15007_consen 74 YKLLRDEFNYKPSLTKAQ 91 (131)
T ss_pred HHHHHHHhCCCCCCCHHH
Confidence 455688899999887665
No 169
>PF03555 Flu_C_NS2: Influenza C non-structural protein (NS2); InterPro: IPR005188 The influenza C virus genome consists of seven single-stranded RNA segments. The shortest RNA segment encodes a 286 amino acid non-structural protein NS1 IPR005187 from INTERPRO as well as the NS2 protein. The NS2 protein is only about 60 amino acids in length and of unknown function.
Probab=29.10 E-value=43 Score=16.23 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=12.1
Q ss_pred HHHHHhhCCCcccchHhhhC
Q psy16546 92 DLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 92 ~k~~~~lg~~p~~~~~~~l~ 111 (111)
.+++.+-.|.|+ +++++|+
T Consensus 38 arlrtessfapr-twedaik 56 (57)
T PF03555_consen 38 ARLRTESSFAPR-TWEDAIK 56 (57)
T ss_pred HHhhcccccCcc-cHHhhhc
Confidence 445555667665 7887763
No 170
>PF03802 CitX: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; InterPro: IPR005551 Members of this protein family are annotated as CitX, containing the CitX domain, the domain is also found in the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25 from EC), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.; GO: 0051191 prosthetic group biosynthetic process
Probab=28.71 E-value=49 Score=20.76 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=20.5
Q ss_pred ccceEEecCCCcccHHHHHHHHHHHh
Q psy16546 43 KIKFYNLGTGQGTSVLQLLRTFERVT 68 (111)
Q Consensus 43 ~~~~yni~~~~~~s~~e~~~~i~~~~ 68 (111)
+...|.+.+..+..++.++-.+.+..
T Consensus 80 Gpe~~~~v~~~a~~vK~~~i~iEe~h 105 (170)
T PF03802_consen 80 GPEAFLVVDGDAEEVKRIMIEIEESH 105 (170)
T ss_pred cceeeEEeCCCHHHHHHHHHHHHccC
Confidence 56778888888888888888887755
No 171
>COG4519 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.68 E-value=47 Score=18.28 Aligned_cols=20 Identities=25% Similarity=0.420 Sum_probs=12.3
Q ss_pred CHHHHHHhhCCCcccchHhhh
Q psy16546 90 NTDLAQRELGWSARCTVEKMC 110 (111)
Q Consensus 90 d~~k~~~~lg~~p~~~~~~~l 110 (111)
+.-++....|| |+.+++|.|
T Consensus 24 nVP~lm~~TGw-PRRT~QDvi 43 (95)
T COG4519 24 NVPELMAATGW-PRRTAQDVI 43 (95)
T ss_pred ChHHHHHHcCC-chhHHHHHH
Confidence 45566666777 455666654
No 172
>PF08827 DUF1805: Domain of unknown function (DUF1805); InterPro: IPR014931 This protein is found in bacteria and archaea and has an N-terminal tetramerisation region that is composed of beta sheets. ; PDB: 1QW2_A.
Probab=28.67 E-value=54 Score=16.89 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=11.5
Q ss_pred HHHHHHhhCCCcccchHhhhC
Q psy16546 91 TDLAQRELGWSARCTVEKMCK 111 (111)
Q Consensus 91 ~~k~~~~lg~~p~~~~~~~l~ 111 (111)
+.++++ +|+++-.+.+|+|.
T Consensus 38 t~~A~~-lGI~~Gm~g~eAL~ 57 (59)
T PF08827_consen 38 TSAAEE-LGIKPGMTGREALE 57 (59)
T ss_dssp -HHHHH-TT--TT-BHHHHGG
T ss_pred HHHHHH-hCCCCCCCHHHHHH
Confidence 444454 99999999888873
No 173
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=28.61 E-value=78 Score=19.58 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=33.4
Q ss_pred CCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhC
Q psy16546 12 EDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTG 69 (111)
Q Consensus 12 ~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~ 69 (111)
++++..|..||++- +. .+. .-.+|.+|++.+-+-..|++.|...+.
T Consensus 110 ~e~~~vwEliH~kS---------e~--egR-pE~vfqLCcS~~E~k~~flK~Irsilr 155 (160)
T cd01255 110 MESNFLWELIHLKS---------EL--EGR-PEKVFVLCCSTAESRNAFLKTIRSILR 155 (160)
T ss_pred cccceEEEEEeecc---------cc--cCC-CcceEEEecCCHHHHHHHHHHHHHHHH
Confidence 34667777777642 11 123 457999999999999999999988764
No 174
>PRK07577 short chain dehydrogenase; Provisional
Probab=28.52 E-value=89 Score=19.73 Aligned_cols=31 Identities=13% Similarity=0.003 Sum_probs=21.2
Q ss_pred eeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 21 IHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 21 v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
...+|+|++++.++..+.... .+..+.+.++
T Consensus 201 ~~~~~~a~~~~~l~~~~~~~~-~g~~~~~~g~ 231 (234)
T PRK07577 201 GTPEEVAAAIAFLLSDDAGFI-TGQVLGVDGG 231 (234)
T ss_pred cCHHHHHHHHHHHhCcccCCc-cceEEEecCC
Confidence 467899999998887642233 4667777654
No 175
>PF08799 PRP4: pre-mRNA processing factor 4 (PRP4) like; InterPro: IPR014906 This small protein is found on PRP4 ribonuleoproteins. PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing. ; PDB: 1MZW_B 2DK4_A.
Probab=28.50 E-value=12 Score=16.39 Aligned_cols=6 Identities=67% Similarity=1.082 Sum_probs=4.0
Q ss_pred CeeeeC
Q psy16546 1 MITVFG 6 (111)
Q Consensus 1 ~~~~~g 6 (111)
||++||
T Consensus 11 Pi~lFG 16 (30)
T PF08799_consen 11 PITLFG 16 (30)
T ss_dssp -SCETT
T ss_pred ChhhhC
Confidence 677888
No 176
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=28.33 E-value=54 Score=20.54 Aligned_cols=26 Identities=8% Similarity=0.078 Sum_probs=21.7
Q ss_pred ccceEEecCCCcccHHHHHHHHHHHh
Q psy16546 43 KIKFYNLGTGQGTSVLQLLRTFERVT 68 (111)
Q Consensus 43 ~~~~yni~~~~~~s~~e~~~~i~~~~ 68 (111)
+.+.|.+.+.....++..+-.+++..
T Consensus 78 G~E~~~~v~~~a~~vK~~~i~iEe~h 103 (165)
T TIGR03124 78 GPEAFLVVDAPALELKRLMIKLEESH 103 (165)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHhCC
Confidence 77888888888889999888888754
No 177
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.23 E-value=43 Score=21.10 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=17.3
Q ss_pred ccceEEecCCCcccHHHHHHHHHHH
Q psy16546 43 KIKFYNLGTGQGTSVLQLLRTFERV 67 (111)
Q Consensus 43 ~~~~yni~~~~~~s~~e~~~~i~~~ 67 (111)
..+.||-+++..+|+.++++++.+.
T Consensus 17 NRRLYnT~TSTYVTL~dla~mVk~g 41 (193)
T COG5394 17 NRRLYNTGTSTYVTLEDLAQMVKEG 41 (193)
T ss_pred cchhcccCCceeeeHHHHHHHHhcC
Confidence 3456777777777777777777653
No 178
>PF15412 Nse4-Nse3_bdg: Binding domain of Nse4/EID3 to Nse3-MAGE
Probab=28.14 E-value=82 Score=15.75 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=19.8
Q ss_pred eEEecCCCcccHHHHHHHHHHHhCCC
Q psy16546 46 FYNLGTGQGTSVLQLLRTFERVTGKP 71 (111)
Q Consensus 46 ~yni~~~~~~s~~e~~~~i~~~~~~~ 71 (111)
-+.++ +..+...+|+..+.+.++..
T Consensus 18 ~lk~~-~~~fd~deFv~~l~~fm~~~ 42 (56)
T PF15412_consen 18 NLKFG-GSGFDVDEFVSKLKTFMGGN 42 (56)
T ss_pred HhccC-CCccCHHHHHHHHHHHhCcc
Confidence 34444 67899999999999999864
No 179
>PRK06182 short chain dehydrogenase; Validated
Probab=28.06 E-value=73 Score=20.88 Aligned_cols=30 Identities=13% Similarity=0.014 Sum_probs=17.7
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecC
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGT 51 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~ 51 (111)
+.+...+|+|++++.++... . ....|+++.
T Consensus 218 ~~~~~~~~vA~~i~~~~~~~---~-~~~~~~~g~ 247 (273)
T PRK06182 218 GRLSDPSVIADAISKAVTAR---R-PKTRYAVGF 247 (273)
T ss_pred ccCCCHHHHHHHHHHHHhCC---C-CCceeecCc
Confidence 34567777777777777653 1 234565553
No 180
>PLN02455 fructose-bisphosphate aldolase
Probab=28.03 E-value=1.2e+02 Score=21.56 Aligned_cols=39 Identities=21% Similarity=0.073 Sum_probs=29.8
Q ss_pred CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546 14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG 54 (111)
Q Consensus 14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~ 54 (111)
|...... ..+++|.+-+.++.+-.+.. ..++.++++|+.
T Consensus 232 G~~~~~~-s~e~vA~~Tv~~l~rtVP~a-vpGI~FLSGGqS 270 (358)
T PLN02455 232 GSDSPKV-SPEVIAEYTVRALQRTVPPA-VPGIVFLSGGQS 270 (358)
T ss_pred CcccCcC-CHHHHHHHHHHHHHhhCCcc-CCcceecCCCCc
Confidence 3333444 99999999999999865556 788888887765
No 181
>PRK07578 short chain dehydrogenase; Provisional
Probab=27.99 E-value=52 Score=20.38 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=21.1
Q ss_pred eeeeHHHHHHHHHHHHhhhhccccccceEEec
Q psy16546 19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLG 50 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~ 50 (111)
.++..+|+|++++.+++.. . .+++|+++
T Consensus 172 ~~~~~~~~a~~~~~~~~~~---~-~g~~~~~~ 199 (199)
T PRK07578 172 EPVPAARVALAYVRSVEGA---Q-TGEVYKVG 199 (199)
T ss_pred CCCCHHHHHHHHHHHhccc---e-eeEEeccC
Confidence 4688999999999998764 3 46777653
No 182
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=27.32 E-value=81 Score=14.84 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=16.0
Q ss_pred ccceEEecCCCcccHHHHHH
Q psy16546 43 KIKFYNLGTGQGTSVLQLLR 62 (111)
Q Consensus 43 ~~~~yni~~~~~~s~~e~~~ 62 (111)
.+++++..+++.+|+.+-++
T Consensus 10 ~gGiidp~tg~~lsv~~A~~ 29 (45)
T PF00681_consen 10 TGGIIDPETGERLSVEEAIQ 29 (45)
T ss_dssp TTSEEETTTTEEEEHHHHHH
T ss_pred eeeEEeCCCCeEEcHHHHHH
Confidence 57899999999999877543
No 183
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.19 E-value=95 Score=20.06 Aligned_cols=35 Identities=9% Similarity=-0.160 Sum_probs=23.9
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCC
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQ 53 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~ 53 (111)
+.+...+|++++++.++....... .+..+.+.+|.
T Consensus 213 ~~~~~~~~va~~~~~l~s~~~~~~-~G~~~~~dgg~ 247 (255)
T PRK06463 213 KTTGKPEDIANIVLFLASDDARYI-TGQVIVADGGR 247 (255)
T ss_pred CCCcCHHHHHHHHHHHcChhhcCC-CCCEEEECCCe
Confidence 446788999999998887653223 46677776553
No 184
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=26.69 E-value=66 Score=21.58 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=34.4
Q ss_pred eeeeHHHHHHHHHHHHhhh-----hc-------cccccceEEecCCCcccHHHHHHHHHHHhCCCccceEcc
Q psy16546 19 DYIHVMDLAVGHVAALNKL-----QG-------EHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEA 78 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~-----~~-------~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~ 78 (111)
++|...|+|++++.+-..| +. .. ..-..|+++.....+..+...+..+-....++...|
T Consensus 16 N~Vt~n~~AN~~LA~GasPiMa~~~~E~~e~~~~a-~al~iNiGTl~~~~~~~m~~A~~~A~~~~~PvVLDP 86 (246)
T PF02110_consen 16 NYVTANDVANALLAIGASPIMAEAPEEVEEFASIA-DALVINIGTLTDERIEAMKKAAKAANELGIPVVLDP 86 (246)
T ss_dssp -TTTHHHHHHHHHHCTSEEEE--STTTHHHHHHCT-SEEEEESTTSSHHHHHHHHHHHHHHHHTT--EEEE-
T ss_pred ccchhhhHHHHHHHcCCCccccCCHHHHHHHHHHc-CEEEEECCCCCHhHHHHHHHHHHHHHHcCCCEEEeC
Confidence 5778899999988766544 00 12 446889998777555555555555444445555544
No 185
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=26.63 E-value=1.1e+02 Score=17.21 Aligned_cols=28 Identities=7% Similarity=0.156 Sum_probs=22.5
Q ss_pred ccceEEecCCCcccHHHHHHHHHHHhCC
Q psy16546 43 KIKFYNLGTGQGTSVLQLLRTFERVTGK 70 (111)
Q Consensus 43 ~~~~yni~~~~~~s~~e~~~~i~~~~~~ 70 (111)
..++|.+.++..-...+-+++|.+++..
T Consensus 75 ~~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 75 PERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 4678888888888888888888888754
No 186
>PF15047 DUF4533: Protein of unknown function (DUF4533)
Probab=26.62 E-value=1.9e+02 Score=19.18 Aligned_cols=49 Identities=6% Similarity=0.122 Sum_probs=34.0
Q ss_pred eeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhC
Q psy16546 20 YIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTG 69 (111)
Q Consensus 20 ~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~ 69 (111)
|-|+.|++.+.=.+.+--...- ..++..+.=.+.-+++|+++.+-+.+.
T Consensus 13 f~~~qd~~s~TN~L~elfN~~m-~tqi~~i~mkEd~~IKd~~eqmi~~~k 61 (225)
T PF15047_consen 13 FFHMQDLFSFTNTLTELFNSHM-NTQILLIAMKEDSNIKDNFEQMIKIFK 61 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-ccceeeeeecccCcHHHHHHHHHHHHH
Confidence 5578887776555554211123 567777877788899999999888773
No 187
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=26.10 E-value=85 Score=20.13 Aligned_cols=19 Identities=11% Similarity=-0.295 Sum_probs=15.6
Q ss_pred eeeeHHHHHHHHHHHHhhh
Q psy16546 19 DYIHVMDLAVGHVAALNKL 37 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~ 37 (111)
.+...+|+++++..++...
T Consensus 218 ~~~~~~~~a~~~~~l~~~~ 236 (254)
T TIGR02415 218 RPSEPEDVAGLVSFLASED 236 (254)
T ss_pred CCCCHHHHHHHHHhhcccc
Confidence 3678899999999888875
No 188
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=25.74 E-value=2.2e+02 Score=19.29 Aligned_cols=52 Identities=10% Similarity=0.018 Sum_probs=36.8
Q ss_pred cceeeeHHHHHHHHHHHHhhhhccccccceEEecCC--------------------------CcccHHHHHHHHHHHhCC
Q psy16546 17 IRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG--------------------------QGTSVLQLLRTFERVTGK 70 (111)
Q Consensus 17 ~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~--------------------------~~~s~~e~~~~i~~~~~~ 70 (111)
.|+|+..+=||..++.|+++. . -|-.+.+.+| ..+|+.+|+++=...++.
T Consensus 134 krP~intd~VCkffieA~e~G---k-Ygw~W~CPng~~~C~y~H~Lp~GyVLsrdk~Kd~tq~eislEefIE~eR~~L~~ 209 (299)
T COG5252 134 KRPWINTDRVCKFFIEAMESG---K-YGWGWTCPNGNMRCSYIHKLPDGYVLSRDKIKDSTQVEISLEEFIELERQSLPE 209 (299)
T ss_pred cCCCCChhHHHHHHHHHHhcC---C-ccceeeCCCCCceeeeeeccCccceeccccccccccccccHHHHHHHHhccCCC
Confidence 678999999999999999975 1 1112222222 248999999988888876
Q ss_pred Cc
Q psy16546 71 PV 72 (111)
Q Consensus 71 ~~ 72 (111)
.+
T Consensus 210 ~L 211 (299)
T COG5252 210 KL 211 (299)
T ss_pred cC
Confidence 53
No 189
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=25.54 E-value=1.7e+02 Score=18.09 Aligned_cols=45 Identities=11% Similarity=0.088 Sum_probs=31.8
Q ss_pred eeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhC
Q psy16546 19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTG 69 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~ 69 (111)
.-+.=.|+...++..++.. ...+|.+++. +-...++.+.+.+..+
T Consensus 29 ~rv~g~dl~~~l~~~~~~~-----~~~ifllG~~-~~~~~~~~~~l~~~yP 73 (172)
T PF03808_consen 29 ERVTGSDLFPDLLRRAEQR-----GKRIFLLGGS-EEVLEKAAANLRRRYP 73 (172)
T ss_pred cccCHHHHHHHHHHHHHHc-----CCeEEEEeCC-HHHHHHHHHHHHHHCC
Confidence 4566678888888877765 5688988854 5566677777777663
No 190
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=24.81 E-value=1.2e+02 Score=15.89 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=18.6
Q ss_pred ecCCCcccHHHHHHHHHHHhCCC
Q psy16546 49 LGTGQGTSVLQLLRTFERVTGKP 71 (111)
Q Consensus 49 i~~~~~~s~~e~~~~i~~~~~~~ 71 (111)
+.-+...|+.++...|.+.++..
T Consensus 15 ~~~~~~~s~~dL~~~i~~~~~~~ 37 (81)
T smart00666 15 LSVPRDISFEDLRSKVAKRFGLD 37 (81)
T ss_pred EEECCCCCHHHHHHHHHHHhCCC
Confidence 33345889999999999999864
No 191
>PF00602 Flu_PB1: Influenza RNA-dependent RNA polymerase subunit PB1; InterPro: IPR001407 Influenza RNA-dependent RNA polymerase is composed of three subunits; P1 (or PB1), P2 (or PA), and P3 (or PB2). There are two separate domains in the influenza virus PB1 protein involved in the interaction with the PB2 and PA subunits [, ]. PB1 has two GTP binding sites.; GO: 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3CM8_B 2ZTT_A 3A1G_C 2ZNL_B 1WBZ_P.
Probab=24.71 E-value=25 Score=27.22 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCCCCCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCC
Q psy16546 9 YGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKP 71 (111)
Q Consensus 9 ~~~~~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~ 71 (111)
..++.|.|.+||++-+.+-.++. +++- . ..=..|+.....-|+.++++.+.+.+..+
T Consensus 122 ~~LtkGRQT~D~i~~RN~Paa~A--l~~t---I-~~~r~nl~~~~g~tmldf~~a~~~~m~~~ 178 (740)
T PF00602_consen 122 DKLTKGRQTYDWISNRNQPAATA--LKET---I-EAFRTNLKGFVGGTMLDFCEAVIDMMELP 178 (740)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHhCCccccchhhccCCccHHH--HHHH---H-HHHHHhcccccCcchHHHHHHHHHHhccc
Confidence 45779999999999999877743 3332 1 22234566667778999999999998754
No 192
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=24.67 E-value=1.1e+02 Score=16.89 Aligned_cols=46 Identities=13% Similarity=0.023 Sum_probs=23.5
Q ss_pred ceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhC
Q psy16546 18 RDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTG 69 (111)
Q Consensus 18 r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~ 69 (111)
...+..+|+.+.+. ++.-- . ..-...+++++....+++.. +....|
T Consensus 16 ~~~l~~~e~lr~ia-~~Rl~---~-P~a~I~la~gr~~~~~~~~~-~~~~sg 61 (93)
T PF06968_consen 16 PPPLSDEEFLRIIA-AFRLL---L-PEAGIRLAGGREALLRDLQP-LTFMSG 61 (93)
T ss_dssp S----HHHHHHHHH-HHHHH---S-TTSEEEEECCHHHCSCCHHH-HHHCCT
T ss_pred CCCCCHHHHHHHHH-HHHHH---C-CCcceEeecCccccCHHHHH-HHHhcc
Confidence 56777888888765 33322 1 23356677787766677333 444444
No 193
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=24.55 E-value=1.3e+02 Score=17.87 Aligned_cols=27 Identities=15% Similarity=-0.006 Sum_probs=23.1
Q ss_pred ccceEEecCCCcccHHHHHHHHHHHhC
Q psy16546 43 KIKFYNLGTGQGTSVLQLLRTFERVTG 69 (111)
Q Consensus 43 ~~~~yni~~~~~~s~~e~~~~i~~~~~ 69 (111)
..+.+|||+|--++..++-.+.++...
T Consensus 57 ~~gkV~lGGGl~m~~~evd~IA~~rVq 83 (126)
T PF12757_consen 57 NAGKVNLGGGLFMDQEEVDAIARKRVQ 83 (126)
T ss_pred CCCeeeCCCCcccCHHHHHHHHHHhcC
Confidence 568899999999999998888877664
No 194
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=24.47 E-value=1.5e+02 Score=19.21 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=32.5
Q ss_pred CCccceeeeHHHHHH------------HHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHH
Q psy16546 14 GTGIRDYIHVMDLAV------------GHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERV 67 (111)
Q Consensus 14 g~~~r~~v~v~D~a~------------a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~ 67 (111)
|...+++++-.++++ ++..+.+.. .+.+|-||+. |.-+.++++++.+.
T Consensus 83 g~~v~c~i~d~~v~~~A~~~g~TRs~aa~~~a~~~~-----~~~I~vIGNA-PTAL~~ll~li~~~ 142 (198)
T PF02570_consen 83 GNEVYCYIDDPEVAELAKEEGITRSAAAMRKAAKEL-----PGAIVVIGNA-PTALFELLELIEEG 142 (198)
T ss_dssp T-EEEECTTSHHHHHHHHHHTS-HHHHHHHHHHCTT-----TTCEEEESS--HHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCchHHHHhhcCCcHHHHHHHHHHHHc-----CCcEEEEeCc-HHHHHHHHHHHHhc
Confidence 466777777777654 444444443 6789988864 77899999998873
No 195
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=24.36 E-value=1.3e+02 Score=16.38 Aligned_cols=35 Identities=14% Similarity=0.045 Sum_probs=26.5
Q ss_pred eEEecCCCcccHHHHHHHHHHHhCCCccceEccCC
Q psy16546 46 FYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEARR 80 (111)
Q Consensus 46 ~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~ 80 (111)
++.+..+...++.++..+|++.++....-....++
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 45666778889999999999999877655544443
No 196
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=24.31 E-value=1.3e+02 Score=16.06 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=13.8
Q ss_pred ceEEe-cCCCcccHHHHHHHH
Q psy16546 45 KFYNL-GTGQGTSVLQLLRTF 64 (111)
Q Consensus 45 ~~yni-~~~~~~s~~e~~~~i 64 (111)
+.|.+ .+++.+|+.|+++.+
T Consensus 63 GGy~L~~~~~~Itl~dI~~av 83 (83)
T PF02082_consen 63 GGYRLARPPEEITLLDIVRAV 83 (83)
T ss_dssp SEEEESS-CCGSBHHHHHHHH
T ss_pred CceeecCCHHHCCHHHHHHhC
Confidence 44555 446789999998865
No 197
>KOG0625|consensus
Probab=24.29 E-value=1.8e+02 Score=21.57 Aligned_cols=47 Identities=9% Similarity=-0.007 Sum_probs=35.2
Q ss_pred eeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHh
Q psy16546 19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVT 68 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~ 68 (111)
+--|.++.++|++.++.-. .. .+-+.-++++..+--++.++.|.+..
T Consensus 32 qpnY~eNfvQa~~~a~~~~--~~-kgatLVVGGDGRyy~~~a~~~I~~ia 78 (558)
T KOG0625|consen 32 QPNYTENFVQAIMNALPGE--KS-KGATLVVGGDGRYYNKEAIQIIAKIA 78 (558)
T ss_pred CCchHHHHHHHHHhccccc--cc-cCceEEEcCCCcchhHHHHHHHHHHH
Confidence 4567888888888887633 33 56778888887887888888888765
No 198
>PRK05953 precorrin-8X methylmutase; Validated
Probab=24.26 E-value=1.5e+02 Score=19.53 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=30.8
Q ss_pred CCccceeeeHHHHHH--------HHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHH
Q psy16546 14 GTGIRDYIHVMDLAV--------GHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERV 67 (111)
Q Consensus 14 g~~~r~~v~v~D~a~--------a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~ 67 (111)
|+...++++-.++.+ ++..+.+.. .+.+|-||+ -+.-+-++++++.+.
T Consensus 87 g~~v~C~i~~~~v~~~g~TRs~aam~~a~~~~-----~g~IvvIGN-APTAL~~l~~li~~g 142 (208)
T PRK05953 87 ANPVYCSTETITRPQKEKTRTAWGIETLARRY-----PEAIFVIGQ-SQTALTALVELVEAE 142 (208)
T ss_pred CCeEEEECCCCCccccccCHHHHHHHHHHHHC-----CCCEEEEeC-cHHHHHHHHHHHHhc
Confidence 455556665544442 455554442 456888885 477899999998774
No 199
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=24.08 E-value=1.4e+02 Score=16.42 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=20.8
Q ss_pred eEEecCCCcccHHHHHHHHHHHhCCC
Q psy16546 46 FYNLGTGQGTSVLQLLRTFERVTGKP 71 (111)
Q Consensus 46 ~yni~~~~~~s~~e~~~~i~~~~~~~ 71 (111)
+|+..++..+.++++++.+.+.++..
T Consensus 57 ~fyy~a~~rvDFR~Lvr~L~~~f~~R 82 (88)
T PF04468_consen 57 TFYYTAESRVDFRELVRDLAREFKTR 82 (88)
T ss_pred EEEEEeCCcCcHHHHHHHHHHHhCce
Confidence 45556678899999999999998743
No 200
>cd00948 FBP_aldolase_I_a Fructose-1,6-bisphosphate aldolase. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). This family includes proteins found in vertebrates, plants, and bacterial plant pathogens. Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=23.46 E-value=1.7e+02 Score=20.61 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=30.0
Q ss_pred CCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546 14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG 54 (111)
Q Consensus 14 g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~ 54 (111)
|...-.-...+++|.+-+.++.+-.+.. ..++.++++|++
T Consensus 224 G~~~~~~~~~e~vA~~Tv~~l~rtvP~a-vpGI~FLSGGqs 263 (330)
T cd00948 224 GADCKKKASPEEVAEYTVRALRRTVPAA-VPGIVFLSGGQS 263 (330)
T ss_pred CCcCCCcCCHHHHHHHHHHHHHhcCCcc-CCeeeeccCCCC
Confidence 3333334689999999999999765555 788888887765
No 201
>PRK05650 short chain dehydrogenase; Provisional
Probab=23.22 E-value=1.7e+02 Score=19.15 Aligned_cols=19 Identities=21% Similarity=0.004 Sum_probs=15.7
Q ss_pred eeeeHHHHHHHHHHHHhhh
Q psy16546 19 DYIHVMDLAVGHVAALNKL 37 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~ 37 (111)
.+++++|+|++++.++++.
T Consensus 208 ~~~~~~~vA~~i~~~l~~~ 226 (270)
T PRK05650 208 SPITAADIADYIYQQVAKG 226 (270)
T ss_pred CCCCHHHHHHHHHHHHhCC
Confidence 4688999999999988763
No 202
>PF11784 DUF3320: Protein of unknown function (DUF3320); InterPro: IPR021754 This family is conserved in Proteobacteria and Chlorobi families. Many members are annotated as being putative DNA helicase-related proteins.
Probab=22.55 E-value=86 Score=15.40 Aligned_cols=19 Identities=21% Similarity=0.123 Sum_probs=15.4
Q ss_pred CcccHHHHHHHHHHHhCCC
Q psy16546 53 QGTSVLQLLRTFERVTGKP 71 (111)
Q Consensus 53 ~~~s~~e~~~~i~~~~~~~ 71 (111)
.+++...+++.|.+++|..
T Consensus 25 gPI~~~~L~~Ri~~a~G~~ 43 (52)
T PF11784_consen 25 GPIHEDELARRIARAWGLS 43 (52)
T ss_pred CCccHHHHHHHHHHHcCcc
Confidence 4788889999999988853
No 203
>PTZ00019 fructose-bisphosphate aldolase; Provisional
Probab=22.42 E-value=1.9e+02 Score=20.68 Aligned_cols=35 Identities=17% Similarity=0.032 Sum_probs=28.3
Q ss_pred eeeeHHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546 19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG 54 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~ 54 (111)
.-...+++|.+-+.++.+-.+.. ..++.++++|+.
T Consensus 234 ~~~s~e~vA~~Tv~~l~rtVP~a-vPGI~FLSGGqS 268 (355)
T PTZ00019 234 VKATPQEVAFYTVRTLSRTVPPA-LPGVMFLSGGQS 268 (355)
T ss_pred CCCCHHHHHHHHHHHHHhcCCcc-CCeeeeccCCCC
Confidence 34689999999999999865556 788998988765
No 204
>KOG4288|consensus
Probab=22.21 E-value=62 Score=21.91 Aligned_cols=40 Identities=8% Similarity=0.136 Sum_probs=29.0
Q ss_pred CccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHH
Q psy16546 15 TGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFER 66 (111)
Q Consensus 15 ~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~ 66 (111)
...++.+.++++|.+.+.+++++ .- .+ .+++.++.++..+
T Consensus 241 ~l~~ppvnve~VA~aal~ai~dp--~f--~G--------vv~i~eI~~~a~k 280 (283)
T KOG4288|consen 241 PLLAPPVNVESVALAALKAIEDP--DF--KG--------VVTIEEIKKAAHK 280 (283)
T ss_pred cccCCCcCHHHHHHHHHHhccCC--Cc--Cc--------eeeHHHHHHHHHH
Confidence 67788999999999999999887 22 22 4566666665443
No 205
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=21.47 E-value=2.7e+02 Score=18.80 Aligned_cols=32 Identities=9% Similarity=0.237 Sum_probs=26.7
Q ss_pred EEecCCCcccHHHHHHHHHHHhCCCccceEcc
Q psy16546 47 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEA 78 (111)
Q Consensus 47 yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~ 78 (111)
..+++|......+..++|.++.+.+..+.+..
T Consensus 161 LIiTDG~i~D~~~t~~aIv~AS~~PlSIiiVG 192 (254)
T cd01459 161 LIITDGEITDMNETIKAIVEASKYPLSIVIVG 192 (254)
T ss_pred EEECCCCcccHHHHHHHHHHHhcCCeEEEEEE
Confidence 34688999999999999999999888777643
No 206
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=21.36 E-value=1.7e+02 Score=19.25 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=26.2
Q ss_pred eeeeHH------HHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCccceEcc
Q psy16546 19 DYIHVM------DLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYIVEA 78 (111)
Q Consensus 19 ~~v~v~------D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~ 78 (111)
.|+..+ ++.+++..+++.. ..+.+.+..+....+.+-++.+++.+|.++.+...+
T Consensus 66 ~Y~~~~~~~~~~s~~~~L~~~~~~~-----~~~~~~~~~P~d~~l~~~l~~~~~~~~i~~~~~~~~ 126 (224)
T PF04244_consen 66 HYIELDDPENTQSFEDALARALKQH-----GIDRLHVMEPGDYRLEQRLESLAQQLGIPLEVLEDP 126 (224)
T ss_dssp EEE-TT-TT--SSHHHHHHHHHHHH---------EEEE--S-HHHHHHHHH----SSS-EEEE--T
T ss_pred EEEeCCCccccccHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHhhhcccCCceEEeCCC
Confidence 466666 3556776666654 345666777777777777777777777665554443
No 207
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=21.18 E-value=2.9e+02 Score=19.05 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=37.4
Q ss_pred CCCccceeeeHHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCCcc
Q psy16546 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP 73 (111)
Q Consensus 13 ~g~~~r~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~~~ 73 (111)
||.-++.-.-+.-+.+++-.+-.+. ... .-..+.+++....|.+++++.+.+.+|.+..
T Consensus 8 DGvL~~g~~~i~ga~eal~~L~~~~-~~~-g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~ 66 (321)
T TIGR01456 8 DGVLFRGKKPIAGASDALRRLNRNQ-GQL-KIPYIFLTNGGGFSERARAEEISSLLGVDVS 66 (321)
T ss_pred cCceECCccccHHHHHHHHHHhccc-ccc-CCCEEEEecCCCCCHHHHHHHHHHHcCCCCC
Confidence 4555554444666777766654431 011 2345667877788999999998888887643
No 208
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=20.99 E-value=2.5e+02 Score=18.74 Aligned_cols=19 Identities=16% Similarity=-0.083 Sum_probs=15.4
Q ss_pred eeeeHHHHHHHHHHHHhhh
Q psy16546 19 DYIHVMDLAVGHVAALNKL 37 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~ 37 (111)
+||.+.|+|++++.+...|
T Consensus 21 N~vt~~~~An~~la~g~sp 39 (263)
T PRK09355 21 NDVVMNFTANGLLALGASP 39 (263)
T ss_pred ccchhhhHHHHHHHhCCCc
Confidence 6888999999998776544
No 209
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=20.98 E-value=2.1e+02 Score=18.93 Aligned_cols=19 Identities=21% Similarity=0.069 Sum_probs=15.4
Q ss_pred eeeeHHHHHHHHHHHHhhh
Q psy16546 19 DYIHVMDLAVGHVAALNKL 37 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~ 37 (111)
+||.+.|+|++++.+...|
T Consensus 16 N~v~~~~~An~~la~g~sp 34 (249)
T TIGR00694 16 NYVAQNFTANGLLALGASP 34 (249)
T ss_pred ccchhhhhHHHHHHcCCCh
Confidence 6888999999998876544
No 210
>PRK05717 oxidoreductase; Validated
Probab=20.89 E-value=1.1e+02 Score=19.85 Aligned_cols=33 Identities=18% Similarity=0.043 Sum_probs=20.8
Q ss_pred eeeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 19 DYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 19 ~~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
.+.+.+|+|.++..++....... .+..+.+.++
T Consensus 214 ~~~~~~~va~~~~~l~~~~~~~~-~g~~~~~~gg 246 (255)
T PRK05717 214 RVGTVEDVAAMVAWLLSRQAGFV-TGQEFVVDGG 246 (255)
T ss_pred CCcCHHHHHHHHHHHcCchhcCc-cCcEEEECCC
Confidence 45678889998888876542122 4566666544
No 211
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=20.72 E-value=2.5e+02 Score=18.24 Aligned_cols=43 Identities=12% Similarity=-0.028 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhhhccccccceEEecCCCcccHHHHHHHHHHHhCCC
Q psy16546 23 VMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKP 71 (111)
Q Consensus 23 v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~~~~ 71 (111)
+..+.+++..+-.+ ....+.+++....+..++++.+.+.+|.+
T Consensus 16 ~~~a~e~i~~l~~~------g~~~~~~tN~~~~~~~~~~~~l~~~~g~~ 58 (236)
T TIGR01460 16 IPGAAEALNRLRAK------GKPVVFLTNNSSRSEEDYAEKLSSLLGVD 58 (236)
T ss_pred CcCHHHHHHHHHHC------CCeEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 34555665555333 35677778777789999999999977765
No 212
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=20.68 E-value=1.3e+02 Score=19.25 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546 23 VMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG 54 (111)
Q Consensus 23 v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~ 54 (111)
+..+++.+..++.+ .+++|.+|+|..
T Consensus 27 i~~a~~~l~~~l~~------~~rI~~~G~GgS 52 (196)
T PRK10886 27 ISRAAMTLVQSLLN------GNKILCCGNGTS 52 (196)
T ss_pred HHHHHHHHHHHHHc------CCEEEEEECcHH
Confidence 45555555555555 578998888764
No 213
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=20.64 E-value=92 Score=13.11 Aligned_cols=17 Identities=0% Similarity=0.024 Sum_probs=12.0
Q ss_pred cCCCcccHHHHHHHHHH
Q psy16546 50 GTGQGTSVLQLLRTFER 66 (111)
Q Consensus 50 ~~~~~~s~~e~~~~i~~ 66 (111)
.++..++..|+...+.+
T Consensus 12 d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 12 DGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp TSSSEEEHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHh
Confidence 34556788888887765
No 214
>PRK12743 oxidoreductase; Provisional
Probab=20.07 E-value=1.6e+02 Score=19.00 Aligned_cols=32 Identities=6% Similarity=-0.209 Sum_probs=20.2
Q ss_pred eeeHHHHHHHHHHHHhhhhccccccceEEecCC
Q psy16546 20 YIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTG 52 (111)
Q Consensus 20 ~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~~~ 52 (111)
+.+.+|++.++..++....... .+.++.+.++
T Consensus 211 ~~~~~dva~~~~~l~~~~~~~~-~G~~~~~dgg 242 (256)
T PRK12743 211 PGDTHEIASLVAWLCSEGASYT-TGQSLIVDGG 242 (256)
T ss_pred CCCHHHHHHHHHHHhCccccCc-CCcEEEECCC
Confidence 4577888888888776542123 4566666554
No 215
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=20.03 E-value=1.4e+02 Score=19.05 Aligned_cols=30 Identities=13% Similarity=-0.013 Sum_probs=18.4
Q ss_pred eeeHHHHHHHHHHHHhhhhccccccceEEec
Q psy16546 20 YIHVMDLAVGHVAALNKLQGEHLKIKFYNLG 50 (111)
Q Consensus 20 ~v~v~D~a~a~~~~~~~~~~~~~~~~~yni~ 50 (111)
+...+|++++++.++.++.... .+..+.+.
T Consensus 216 ~~~~e~va~~~~~l~~~~~~~~-~G~~~~~~ 245 (248)
T PRK06947 216 AGEADEVAETIVWLLSDAASYV-TGALLDVG 245 (248)
T ss_pred CcCHHHHHHHHHHHcCccccCc-CCceEeeC
Confidence 3567888888888877652223 44555544
No 216
>PRK13938 phosphoheptose isomerase; Provisional
Probab=20.00 E-value=1.4e+02 Score=19.20 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhhhccccccceEEecCCCc
Q psy16546 23 VMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG 54 (111)
Q Consensus 23 v~D~a~a~~~~~~~~~~~~~~~~~yni~~~~~ 54 (111)
+.++++.+..++.+ .+++|.+|.|..
T Consensus 31 ~~~~a~~~~~~l~~------g~rI~i~G~G~S 56 (196)
T PRK13938 31 ARAIGDRLIAGYRA------GARVFMCGNGGS 56 (196)
T ss_pred HHHHHHHHHHHHHC------CCEEEEEeCcHH
Confidence 45566666666665 578888887754
Done!