RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16546
(111 letters)
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia,
isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A*
1i3n_A*
Length = 348
Score = 192 bits (490), Expect = 2e-62
Identities = 64/109 (58%), Positives = 82/109 (75%), Gaps = 1/109 (0%)
Query: 3 TVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLR 62
VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ E + YNLGTG G SVLQ+++
Sbjct: 224 NVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLK-EQCGCRIYNLGTGTGYSVLQMVQ 282
Query: 63 TFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
E+ +GK +PY V ARREGD+ + YAN LAQ ELGW+A +++MC+
Sbjct: 283 AMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCE 331
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 191 bits (489), Expect = 2e-62
Identities = 54/109 (49%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Query: 3 TVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLR 62
+FG DY TEDGTG+RDYIHVMDLA GHV A+ KL + YNLG G G SVL ++
Sbjct: 216 AIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLA-NKPGVHIYNLGAGVGNSVLDVVN 274
Query: 63 TFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
F + GKPV Y RREGD+ + +A+ A REL W T+++M +
Sbjct: 275 AFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 191 bits (489), Expect = 3e-62
Identities = 56/109 (51%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Query: 3 TVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLR 62
VFG+DY T DGTG+RDYIHV+DLA GH+AAL+ L+ NLGTG+G SVL+++R
Sbjct: 220 RVFGSDYPTPDGTGVRDYIHVVDLARGHIAALDALERRD-ASLTVNLGTGRGYSVLEVVR 278
Query: 63 TFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
FE+ +G+ VPY + ARR GD+ YAN A +GW A +E+MC
Sbjct: 279 AFEKASGRAVPYELVARRPGDVAECYANPAAAAETIGWKAERDLERMCA 327
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 192 bits (490), Expect = 2e-59
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%)
Query: 3 TVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLK---IKFYNLGTGQGTSVLQ 59
+FG DY + DGT IRDYIHV+DLA GH+AAL L+ + + +NLG+G+G++V +
Sbjct: 231 YIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFE 290
Query: 60 LLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
+ F + +G +PY V RR GD++++ A D A+REL W VE CK
Sbjct: 291 VYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCK 342
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 177 bits (450), Expect = 7e-56
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQ-----GEHLKIKFYNLGTGQGTS 56
+ +FG DY T DGT +RDY+HV DLA H+ AL+ ++ + +NLGT +G S
Sbjct: 254 MPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYS 313
Query: 57 VLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSA-RCTVEKMCK 111
V +++ + TG P+P RREGD + A +D A+ LGW T+E + +
Sbjct: 314 VREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIME 369
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose
metabolism, isomerase, NAD, spine; HET: NAD; 2.7A
{Bacillus anthracis}
Length = 330
Score = 169 bits (432), Expect = 8e-54
Identities = 46/111 (41%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
I +FG DY T DGT IRDYIHV DL H L LQ + FYNLG G G SV +++
Sbjct: 206 IMMFGDDYNTPDGTCIRDYIHVEDLVAAHFLGLKDLQ-NGGESDFYNLGNGNGFSVKEIV 264
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCT-VEKMCK 111
VT +P V RR GD + A++ A+ +LGW R V+ + +
Sbjct: 265 DAVREVTNHEIPAEVAPRRAGDPARLVASSQKAKEKLGWDPRYVNVKTIIE 315
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica}
PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 132 bits (335), Expect = 2e-39
Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 13/110 (11%)
Query: 4 VFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRT 63
F +D +RD++ + D +L + + +N+ TG+G S+ ++
Sbjct: 209 CFCSDT-------VRDFLDMSDFLAIADLSLQEGRPTG----VFNVSTGEGHSIKEVFDV 257
Query: 64 FERVTGKPV--PYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
G + P V A D+ S+ + + E GW A+ +
Sbjct: 258 VLDYVGATLAEPVPVVAPGADDVPSVVLDPSKTETEFGWKAKVDFKDTIT 307
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 131 bits (333), Expect = 2e-39
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+T++ D +RDY++V D+A H AL L+G YN+GTG+G + ++L
Sbjct: 200 VTLYARKTPG-DEGCVRDYVYVGDVAEAHALALFSLEG------IYNVGTGEGHTTREVL 252
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKM 109
GK R GD+ + GW + ++
Sbjct: 253 MAVAEAAGKAPEVQPAPPRPGDLERSVLSPLKL-MAHGWRPKVGFQEG 299
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 109 bits (275), Expect = 1e-30
Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 12/113 (10%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ V G DGT + Y++V D +AA K + N+G VL +
Sbjct: 191 LEVLG------DGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIA 244
Query: 62 RTFERVTGKPVPYIVEARRE------GDIVSMYANTDLAQRELGWSARCTVEK 108
+ V G + GD+ M + GW T +
Sbjct: 245 QIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSAE 297
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 102 bits (257), Expect = 5e-28
Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 14/110 (12%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ + G +G + YI++ D + L + ++ +N+G+ V ++
Sbjct: 192 LEILG------NGEQNKSYIYISDCVDAMLFGLRGDE----RVNIFNIGSEDQIKVKRIA 241
Query: 62 RTFERVTGKPVPYIVEA---RREGDIVSMYANTDLAQRELGWSARCTVEK 108
G + +GD+ M + + + LGW R E+
Sbjct: 242 EIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKL-KRLGWKPRYNSEE 290
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 85.0 bits (211), Expect = 3e-21
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 7/96 (7%)
Query: 14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP 73
RD++ V DLA V A++ + Y+ +G ++ +L P
Sbjct: 215 TKARRDFVFVKDLARATVRAVDGVGHG-----AYHFSSGTDVAIKELYDAVVEAMALPSY 269
Query: 74 YIVEAR--REGDIVSMYANTDLAQRELGWSARCTVE 107
E R D S+ + ++ G ++
Sbjct: 270 PEPEIRELGPDDAPSILLDPSRTIQDFGKIEFTPLK 305
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 84.1 bits (209), Expect = 4e-21
Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 13/109 (11%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNK-LQGEHLKIKFYNLGTGQGTSVLQL 60
+T+ + R++++ D A + AL + +N+G+G + ++
Sbjct: 187 LTLHA------NSVAKREFLYAKDAAKSVIYALKQEKVSG-----TFNIGSGDALTNYEV 235
Query: 61 LRTFERVTGKPVPYIV-EARREGDIVSMYANTDLAQRELGWSARCTVEK 108
T G +V I S Y ++ A+ L +S
Sbjct: 236 ANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDYNFAT 284
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 84.0 bits (208), Expect = 1e-20
Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 14/115 (12%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+TV+G T IRD + +++A+ + A + + +N T SV +L
Sbjct: 263 LTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEF-------RVFNQFTE-QFSVNELA 314
Query: 62 RTFERVTGK-----PVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
+ K + R E + A ELG + +
Sbjct: 315 SLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKL-MELGLEPHYLSDSLLD 368
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 76.2 bits (188), Expect = 6e-18
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNK-LQGEHLKIKFYNLGTGQGTSVLQL 60
+ + G RD+I V D+A G +A G YN+ +G+ TS+ L
Sbjct: 248 LPLEN------GGVATRDFIFVEDVANGLIACAADGTPGG-----VYNIASGKETSIADL 296
Query: 61 LRTFERVTGKPVPYIVEARREGDIV-SMYANTDLAQRELGWSARCTVE 107
+TG +R D + + + A+RELG+SA +++
Sbjct: 297 ATKINEITGNNTELDRLPKRPWDNSGKRFGSPEKARRELGFSADVSID 344
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 72.7 bits (179), Expect = 1e-16
Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 13/112 (11%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ + G DG RD+ ++ + ++ A ++ YN+ G TS+ QL
Sbjct: 235 VYING------DGETSRDFCYIENTVQANLLAATAGLDARNQV--YNIAVGGRTSLNQLF 286
Query: 62 RTFERVTGK-----PVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEK 108
+ + REGD+ A+ A + LG++ + V
Sbjct: 287 FALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPKYDVSA 338
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 72.3 bits (178), Expect = 2e-16
Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 11/107 (10%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ +F G +RD++++ D+ +V A+ + YN+G Q S +++
Sbjct: 217 VKLFE------FGEQLRDFVYIEDVIQANVKAMKAQKSG-----VYNVGYSQARSYNEIV 265
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEK 108
+ G ++ A+ + +L ++ +E
Sbjct: 266 SILKEHLGDFKVTYIKNPYAFFQKHTQAHIEPTILDLDYTPLYDLES 312
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 71.6 bits (176), Expect = 2e-16
Identities = 14/110 (12%), Positives = 36/110 (32%), Gaps = 18/110 (16%)
Query: 8 DYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERV 67
+ + + IH + E + + G +V + + +V
Sbjct: 233 HWHASPRSAVGFLIHGAMID-----------VEKVGPRRNLSMPGLSATVGEQIEALRKV 281
Query: 68 TGKPVPYIVEARREGDIVSMYANT------DLAQRELGWSARCTVEKMCK 111
G+ ++ R +++ RELG++A + E++ +
Sbjct: 282 AGEKAVALIR-REPNEMIMRMCEGWAPGFEAKRARELGFTAESSFEEIIQ 330
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 71.0 bits (175), Expect = 3e-16
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 12/99 (12%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ V G DG RD+ ++ D+ VA N+ N G+GQ SV ++
Sbjct: 198 LPVEG------DGEQRRDFTYITDVVDKLVALANRPLPS-----VVNFGSGQSLSVNDVI 246
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGW 100
R + + + R +I A+T L R++G
Sbjct: 247 RILQATSPAAEV-ARKQPRPNEITEFRADTALQTRQIGE 284
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 67.6 bits (166), Expect = 6e-15
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 8/99 (8%)
Query: 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV 72
RD+++V D+A ++ L +NLGTG+ S + K
Sbjct: 204 SENFKRDFVYVGDVADVNLWFLENGVSG-----IFNLGTGRAESFQAVADATLAYHKKGQ 258
Query: 73 PYIV---EARREGDIVSMYANTDLAQRELGWSARCTVEK 108
+ + + A+ + TV +
Sbjct: 259 IEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAE 297
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 65.0 bits (159), Expect = 5e-14
Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 13/112 (11%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ + G DG RD+ ++ ++ ++ + L + K YN+ G T++ +L
Sbjct: 233 VYING------DGETSRDFCYIDNVIQMNILSA--LAKDSAKDNIYNVAVGDRTTLNELS 284
Query: 62 RTFERVTG-----KPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEK 108
+ R GD+ A+ A L + + +
Sbjct: 285 GYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNIKIRE 336
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 63.8 bits (156), Expect = 2e-13
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 8/99 (8%)
Query: 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV 72
RD+++V D+A ++ L +NLGTG+ S + K
Sbjct: 251 SENFKRDFVYVGDVADVNLWFLENGVSG-----IFNLGTGRAESFQAVADATLAYHKKGQ 305
Query: 73 PYIV---EARREGDIVSMYANTDLAQRELGWSARCTVEK 108
+ + + A+ + TV +
Sbjct: 306 IEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAE 344
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 53.0 bits (128), Expect = 1e-09
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 9 YGTEDGTGIRDYIHVMDLAVGHVAALNKL--QGEHLKIKFYNLGTGQG--TSVLQLLRTF 64
G +G +RD +H D ++ ++ +N+G S+L+L +
Sbjct: 230 SG--NGKQVRDVLHAED----MISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLL 283
Query: 65 ERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVE 107
E + + RE D A+ + WS + + +
Sbjct: 284 EDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKVSAK 326
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 52.7 bits (127), Expect = 1e-09
Identities = 13/113 (11%), Positives = 33/113 (29%), Gaps = 11/113 (9%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ +++ D V + + + YN+ T + +L
Sbjct: 195 YKCYL------APNRALPMMYMPDALKALVDLYEADRDKLVLRNGYNV-TAYTFTPSELY 247
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMY---ANTDLAQRELGWSARCTVEKMCK 111
+ + E R I + + ++ A E G+S +++
Sbjct: 248 SKIKERIPEFEIEYKEDFR-DKIAATWPESLDSSEASNEWGFSIEYDLDRTID 299
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 50.4 bits (121), Expect = 9e-09
Identities = 14/111 (12%), Positives = 29/111 (26%), Gaps = 7/111 (6%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
F +++ D + + + YNL T
Sbjct: 201 YECFL------SSETKMPMMYMDDAIDATINIMKAPVEKIKIHSSYNLAAMSFTPTEIAN 254
Query: 62 RTFERVTGKPVPYIVEAR-REGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
+ + + Y + R + D + A+ + W +E M K
Sbjct: 255 EIKKHIPEFTITYEPDFRQKIADSWPASIDDSQAREDWDWKHTFDLESMTK 305
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 49.7 bits (119), Expect = 1e-08
Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 12/106 (11%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
++G DG R + + + G + E + N+G+ + S+ ++
Sbjct: 235 FEMWG------DGLQTRSFTFIDECVEGVLRLTKSDFREPV-----NIGSDEMVSMNEMA 283
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVE 107
K +P I + ++ +L + +LGW+ ++
Sbjct: 284 EMVLSFEEKKLP-IHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLK 328
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 41.1 bits (97), Expect = 2e-05
Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 33/120 (27%)
Query: 16 GIRDYIHVMDLAVGHVAALNKLQ-GEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPY 74
G R+ I + G + AL + + GE Y L G + L R + G+P P
Sbjct: 212 GQRNVIDAAEAGRGLLMALERGRIGER-----YLLT-GHNLEMADLTRRIAELLGQPAPQ 265
Query: 75 IVEAR------REGDIVS--------------------MYANTDLAQRELGWSARCTVEK 108
+ G + + + A+ ELG+ + ++
Sbjct: 266 PMSMAMARALATLGRLRYRVSGQLPLLDETAIEVMAGGQFLDGRKAREELGFFSTTALDD 325
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia
pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Length = 357
Score = 39.1 bits (91), Expect = 1e-04
Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKI-KFYNLG--TGQGTSVLQLLRTFERVTG 69
+ IR + HV++ G++ KL + + + +N G T V ++ + G
Sbjct: 225 NPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWG 284
Query: 70 KPVPYIVEARR---EGDIVSMYANTDLAQRELGWSARCTVEK 108
+ + ++ E + + + A+ +LGW R +
Sbjct: 285 EGASWQLDGNAHPHEAHYLKL--DCSKAKMQLGWHPRWNLNT 324
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain
dehydrogenase/reductase, rossmann fold, oxidoreductase;
HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Length = 321
Score = 37.2 bits (87), Expect = 4e-04
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 47 YNLGTGQGTSVLQLLRTFERVTGKPVPYIVEAR--REGDIVSMYANTDLAQRELGWSARC 104
YN+ +G GT + +L + + + R ++ ++ + + GW R
Sbjct: 246 YNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRI 305
Query: 105 TVEKMCK 111
+EK
Sbjct: 306 PLEKSLF 312
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain
dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A
{Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Length = 337
Score = 34.8 bits (81), Expect = 0.003
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 31/112 (27%)
Query: 9 YGTEDGTGIRDYIHVMDLAVGHVAALNKL-----QGEHLKIKFYNLGTGQGTSVLQLLRT 63
YG DG +R+++H D H + + GE Y++G G + +L
Sbjct: 208 YG--DGANVREWVHTDD----HCRGIALVLAGGRAGE-----IYHIGGGLELTNRELTGI 256
Query: 64 FERVTGKPVPYI--VEAR-----REGDIVSMYA-NTDLAQRELGWSARCTVE 107
G + V R R Y+ + +RELG+ + +
Sbjct: 257 LLDSLGADWSSVRKVADRKGHDLR-------YSLDGGKIERELGYRPQVSFA 301
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase,
structural genomics, STRU genomics consortium, SGC,
lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP:
c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 34.7 bits (80), Expect = 0.003
Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 11/106 (10%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+TV+G G+ R + +V DL G VA +N NLG + ++L+
Sbjct: 226 LTVYG------SGSQTRAFQYVSDLVNGLVALMNSNVSSP-----VNLGNPEEHTILEFA 274
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVE 107
+ + + G + + D + A+ LGW +E
Sbjct: 275 QLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLE 320
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.006
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 22/95 (23%)
Query: 2 ITVFGADYGTEDGTGIRDY------IHVMDLAVGHV--AALNKLQGEHLKIKFYNLGTGQ 53
I V Y T DG+ +R V + V + + H+ + F G G
Sbjct: 457 IPV----YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI-LDF---GPG- 507
Query: 54 GTSVLQLLRTFERVTGKPVPYI----VEARREGDI 84
G S L +L T G V I ++ + D
Sbjct: 508 GASGLGVL-THRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 29.6 bits (66), Expect = 0.20
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 12/46 (26%)
Query: 29 GHVAALNKLQG--EHLKIKFYNLGTGQGTSVLQLLRTF--ERVTGK 70
G + AL+ + +K++ +++L ++ E V G
Sbjct: 1857 GDLRALDTVTNVLNFIKLQ--------KIDIIELQKSLSLEEVEGH 1894
Score = 28.5 bits (63), Expect = 0.50
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 11/53 (20%)
Query: 25 DLAVGHVAALNKLQGEHLKIKFYNLGTGQ-----GTSVLQLLRTFERVTGKPV 72
DL +V+ + ++I Y+ G S+ + + + + PV
Sbjct: 442 DLVKNNVS----FNAKDIQIPVYDTFDGSDLRVLSGSISERI--VDCIIRLPV 488
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP;
1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A*
1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Length = 321
Score = 33.3 bits (77), Expect = 0.008
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIK-----FYNLGTGQGTSVLQLLRTFERV 67
GT +R+++HV D+A + + L+ N+GTG ++ +L +T +V
Sbjct: 204 SGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKV 263
Query: 68 TG 69
G
Sbjct: 264 VG 265
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for
structural genomics of infectio diseases, csgid, niaid;
HET: NAD SUC; 3.00A {Bacillus anthracis}
Length = 346
Score = 32.9 bits (76), Expect = 0.011
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 31/112 (27%)
Query: 9 YGTEDGTGIRDYIHVMDLAVGHVAALNKL-----QGEHLKIKFYNLGTGQGTSVLQLLRT 63
YG DG +RD++HV D H +A++ + GE YN+G + ++++
Sbjct: 231 YG--DGLNVRDWLHVTD----HCSAIDVVLHKGRVGE-----VYNIGGNNEKTNVEVVEQ 279
Query: 64 FERVTGKPVPYI--VEAR-----REGDIVSMYA-NTDLAQRELGWSARCTVE 107
+ GK I V R R YA N + + E W + T E
Sbjct: 280 IITLLGKTKKDIEYVTDRLGHDRR-------YAINAEKMKNEFDWEPKYTFE 324
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 32.8 bits (75), Expect = 0.012
Identities = 16/122 (13%), Positives = 30/122 (24%), Gaps = 23/122 (18%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG-TSVLQL 60
I + G R + + D + G + N+G + S+ +L
Sbjct: 210 IKLID------GGKQKRCFTDIRDGIEALYRIIEN-AGNRCDGEIINIGNPENEASIEEL 262
Query: 61 LRTFERVTGKPVPYIVEARREGDIVSMYA---------------NTDLAQRELGWSARCT 105
K G V + + A R L W +
Sbjct: 263 GEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKID 322
Query: 106 VE 107
++
Sbjct: 323 MQ 324
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus
horikoshii}
Length = 336
Score = 32.5 bits (75), Expect = 0.015
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 31/112 (27%)
Query: 9 YGTEDGTGIRDYIHVMDLAVGHVAALNKL-----QGEHLKIKFYNLGTGQGTSVLQLLRT 63
YG G +RD+++V D HV A+ + E YN+ G+ + L++++
Sbjct: 208 YG--TGKNVRDWLYVED----HVRAIELVLLKGESRE-----IYNISAGEEKTNLEVVKI 256
Query: 64 FERVTGKPVPYI--VEAR-----REGDIVSMYA-NTDLAQRELGWSARCTVE 107
R+ GK I VE R R Y+ ++ R+L W + T +
Sbjct: 257 ILRLMGKGEELIELVEDRPGHDLR-------YSLDSWKITRDLKWRPKYTFD 301
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD;
1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A*
1ket_A* 1kep_A*
Length = 348
Score = 32.1 bits (74), Expect = 0.025
Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 31/110 (28%)
Query: 9 YGTEDGTGIRDYIHVMDLAVGHVAALNKL-----QGEHLKIKFYNLGTGQGTSVLQLLRT 63
YG +G +RD+IH D H + + GE Y +G + ++L
Sbjct: 218 YG--EGKNVRDWIHTND----HSTGVWAILTKGRMGE-----TYLIGADGEKNNKEVLEL 266
Query: 64 FERVTGKPVPYI--VEAR-----REGDIVSMYA-NTDLAQRELGWSARCT 105
G+P V R R YA + + ELGW+ + T
Sbjct: 267 ILEKMGQPKDAYDHVTDRAGHDLR-------YAIDASKLRDELGWTPQFT 309
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 31.3 bits (71), Expect = 0.039
Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 23/122 (18%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQG-TSVLQL 60
I++ G+ R + +V D + + G K YN+G SV +L
Sbjct: 233 ISLVD------GGSQKRAFTYVDDGISALMKIIENSNGVATG-KIYNIGNPNNNFSVREL 285
Query: 61 LRTFERVTGKPVPYIVEARREGDIVSMYA---------------NTDLAQRELGWSARCT 105
+ + Y A+R + + + +ELGW+ + T
Sbjct: 286 ANKMLELAAEFPEYADSAKRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFT 345
Query: 106 VE 107
+
Sbjct: 346 FD 347
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 30.3 bits (69), Expect = 0.082
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 13/94 (13%)
Query: 20 YIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI---V 76
YI D+A G +A + + K Y L +G + +L +G + Y +
Sbjct: 171 YITRNDIARGVIAII--KNPDTWG-KRYLL-SGYSYDMKELAAILSEASGTEIKYEPVSL 226
Query: 77 EARREG-----DIVSMYANTDLAQRELGWSARCT 105
E E ++ A+ A G + +
Sbjct: 227 ETFAEMYDEPKGFGALLASMYHAGAR-GLLDQES 259
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET:
TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2
PDB: 1g1a_A* 1keu_A* 1bxk_A*
Length = 361
Score = 29.0 bits (66), Expect = 0.23
Identities = 33/122 (27%), Positives = 44/122 (36%), Gaps = 44/122 (36%)
Query: 9 YGTEDGTGIRDYIHVMDLAVGHVAALNKL-----QGEHLKIKFYNLGTGQGTS------- 56
YG G IRD+++V D H AL+ + GE YN+G G +
Sbjct: 224 YG--KGDQIRDWLYVED----HARALHMVVTEGKAGET-----YNIG---GHNEKKNLDV 269
Query: 57 VLQLLRTFERVTGKPVPY---I--VEAR-----REGDIVSMYA-NTDLAQRELGWSARCT 105
V + + + K Y I V R R YA + RELGW T
Sbjct: 270 VFTICDLLDEIVPKATSYREQITYVADRPGHDRR-------YAIDAGKISRELGWKPLET 322
Query: 106 VE 107
E
Sbjct: 323 FE 324
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 29.3 bits (66), Expect = 0.24
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 3/56 (5%)
Query: 20 YIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI 75
+ V D +G V E + L + + + + T K V
Sbjct: 188 GMSVSD--LGPVVLSLLKMPEKYVGQNIGL-STCRHTAEEYAALLTKHTRKVVHDA 240
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd reductase,
NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2
PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A*
2vuu_A*
Length = 352
Score = 29.0 bits (65), Expect = 0.28
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 31 VAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI 75
+ + K + L T + S +Q+ F R + V Y+
Sbjct: 200 LLQIFKDGPQKWNGHRIAL-TFETLSPVQVCAAFSRALNRRVTYV 243
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A
{Escherichia coli} SCOP: c.2.1.2
Length = 372
Score = 27.6 bits (62), Expect = 0.72
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 94 AQRELGWSARCTVEKMCK 111
A +LGW T+ +M
Sbjct: 326 AHEKLGWKPEITLREMVS 343
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 27.6 bits (62), Expect = 0.85
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 20 YIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVPYI 75
+ +LA+ L + H K YNL + Q + +L + V+GK V +
Sbjct: 172 SVTRNELALAAATVL--TEEGHEN-KTYNLVSNQPWTFDELAQILSEVSGKKVVHQ 224
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase,
lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A
{Aquifex aeolicus} PDB: 2z95_A*
Length = 345
Score = 27.6 bits (62), Expect = 0.90
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 94 AQRELGWSARCTVEKMCK 111
A ++LGW R T +++ +
Sbjct: 311 AMKKLGWKPRTTFDELVE 328
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase,
rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas
aeruginosa} SCOP: c.2.1.2
Length = 335
Score = 27.1 bits (61), Expect = 1.2
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 47 YNLGTGQGTSVLQLLR-TFERVTGKPVPYIVEA----RREGDIVSMYANTDLAQRELGWS 101
Y + TG T+V + + FE V G ++ R ++ + N AQR LGW
Sbjct: 254 YVVATGVTTTVRDMCQIAFEHV-GLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWK 312
Query: 102 ARCTVEKMCK 111
R +++++ +
Sbjct: 313 PRTSLDELIR 322
>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep
heparin, hormone-growth factor complex; HET: NAG BMA
MAN; 1.30A {Drosophila melanogaster} SCOP: c.1.8.5
d.26.3.1 PDB: 1jne_A*
Length = 420
Score = 27.1 bits (60), Expect = 1.2
Identities = 5/40 (12%), Positives = 13/40 (32%), Gaps = 10/40 (25%)
Query: 19 DYIHVM--DLA--------VGHVAALNKLQGEHLKIKFYN 48
D++++ D + A + G ++ N
Sbjct: 215 DFVNLATFDFLTPARNPEEADYSAPIYHPDGSKDRLAHLN 254
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium,
rossman-fold, short-chain dehydrogenase/reductase, SDR,
structural genomics,lyase; HET: NDP GDP; 1.84A {Homo
sapiens} SCOP: c.2.1.2
Length = 375
Score = 27.2 bits (61), Expect = 1.2
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 94 AQRELGWSARCTVEKMCK 111
A+++L W R +++ +
Sbjct: 340 AKQKLNWKPRVAFDELVR 357
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 26.5 bits (59), Expect = 1.7
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 6 GADYGTEDGTGIRDYIHVMDLAVGHVAAL 34
G + Y+ +D+ + H+ L
Sbjct: 232 GEVSPALALMPPQYYVSAVDIGLLHLGCL 260
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 26.5 bits (59), Expect = 1.8
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPVP 73
G G D A + + H K Y L ++ QL + +GK V
Sbjct: 162 GDGKIASATRADYAAAAARVI--SEAGHEG-KVYELAGDSAWTLTQLAAELTKQSGKQVT 218
Query: 74 YIVEARRE 81
Y + +
Sbjct: 219 YQNLSEAD 226
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain
dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Length = 381
Score = 26.1 bits (58), Expect = 2.3
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 94 AQRELGWSARCTVEKMCK 111
A+ LGW + EK+ K
Sbjct: 328 AKEVLGWKPQVGFEKLVK 345
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 26.4 bits (58), Expect = 2.3
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV 72
DG ++ D+ + A++ L Y S+ +L+ +E+ K +
Sbjct: 182 DGNARVVFVKEEDIGTFTIKAVDD--PRTLNKTLYLRLPANTLSLNELVALWEKKIDKTL 239
Query: 73 PYI 75
Sbjct: 240 EKA 242
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 25.0 bits (55), Expect = 4.0
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 9/40 (22%)
Query: 67 VTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTV 106
+ G Y++E EG + AN DL + + T+
Sbjct: 39 LDG----YVLEYCFEGTEDWIVANKDLIDKT-----KFTI 69
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN
joint center for structural genomics, JCSG; HET: SAH;
2.11A {Anabaena variabilis atcc 29413}
Length = 245
Score = 25.4 bits (55), Expect = 4.1
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 49 LGTGQGTSVLQLLRTFERVTG 69
G GT L + F RV G
Sbjct: 63 FACGNGTQTKFLSQFFPRVIG 83
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 25.0 bits (55), Expect = 4.3
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 9/43 (20%)
Query: 67 VTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKM 109
+T YIVE R + + AN TV +
Sbjct: 42 ITS----YIVEKRDLPNGRWLKANFSNILEN-----EFTVSGL 75
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 24.8 bits (54), Expect = 6.3
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV 72
DG Y+ D+ + A N L + + +++ +E+ GK +
Sbjct: 181 DGNVKGAYVTEADVGTFTIRAAN--DPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTL 238
Query: 73 PYI 75
Sbjct: 239 EKT 241
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.410
Gapped
Lambda K H
0.267 0.0825 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,803,614
Number of extensions: 101684
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 74
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)