RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16546
(111 letters)
>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId:
5691]}
Length = 383
Score = 99.5 bits (246), Expect = 8e-27
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKF-----YNLGTGQGTS 56
+ +FG DY T DGT +RDY+HV DLA H+ AL+ ++ K +NLGT +G S
Sbjct: 254 MPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYS 313
Query: 57 VLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEK 108
V +++ + TG P+P RREGD + A +D A+ LGW + +
Sbjct: 314 VREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLE 365
>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 346
Score = 90.5 bits (223), Expect = 1e-23
Identities = 63/110 (57%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ VFG DY TEDGTG+RDYIHV+DLA GH+AAL KL+ + + YNLGTG G SVLQ++
Sbjct: 223 LNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQC-GCRIYNLGTGTGYSVLQMV 281
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
+ E+ +GK +PY V ARREGD+ + YAN LAQ ELGW+A +++MC+
Sbjct: 282 QAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCE 331
>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Escherichia coli [TaxId:
562]}
Length = 338
Score = 90.0 bits (222), Expect = 2e-23
Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ +FG DY TEDGTG+RDYIHVMDLA GHV A+ KL + + YNLG G G SVL ++
Sbjct: 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKP-GVHIYNLGAGVGNSVLDVV 273
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
F + GKPV Y RREGD+ + +A+ A REL W T+++M +
Sbjct: 274 NAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQ 323
>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 347
Score = 78.9 bits (193), Expect = 2e-19
Identities = 49/113 (43%), Positives = 71/113 (62%), Gaps = 3/113 (2%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKF---YNLGTGQGTSVL 58
+ +FG DY + DGT IRDYIHV+DLA GH+AAL L+ + +NLG+G+G++V
Sbjct: 220 LYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVF 279
Query: 59 QLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
++ F + +G +PY V RR GD++++ A D A+REL W VE CK
Sbjct: 280 EVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCK 332
>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 312
Score = 75.9 bits (186), Expect = 2e-18
Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 11/110 (10%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+TV+G G+ R + +V DL G VA +N NLG + ++L+
Sbjct: 200 LTVYG------SGSQTRAFQYVSDLVNGLVALMNSNVSSP-----VNLGNPEEHTILEFA 248
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
+ + + G + + D + A+ LGW +E+
Sbjct: 249 QLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLN 298
>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptomyces venezuelae [TaxId: 54571]}
Length = 322
Score = 74.1 bits (181), Expect = 1e-17
Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 11/111 (9%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ ++G DG +R+++H D G L + + Y++G G + +L
Sbjct: 205 LPLYG------DGANVREWVHTDDHCRGIALVLAGGRAG----EIYHIGGGLELTNRELT 254
Query: 62 RTFERVTGKPVPYIVE-ARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
G + + A R+G + + +RELG+ + +
Sbjct: 255 GILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGLA 305
>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi
[TaxId: 90370]}
Length = 338
Score = 71.7 bits (174), Expect = 8e-17
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 6/110 (5%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
T+ G +G +RD +H D+ + AL + S+L+L
Sbjct: 226 FTISG------NGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELF 279
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
+ E + + RE D A+ + WS + + + +
Sbjct: 280 KLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKVSAKDGVQ 329
>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 361
Score = 71.7 bits (175), Expect = 1e-16
Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 18/118 (15%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ ++G G IRD+++V D A + + + + YN+G L ++
Sbjct: 221 LPIYG------KGDQIRDWLYVEDHARALHMVVTEGKAG----ETYNIGGHNEKKNLDVV 270
Query: 62 RTF--------ERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
T + T A R G + RELGW T E +
Sbjct: 271 FTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIR 328
>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 341
Score = 60.7 bits (146), Expect = 7e-13
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 13/115 (11%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
+ + G DG RD+ ++ + ++ A ++ YN+ G TS+ QL
Sbjct: 224 VYING------DGETSRDFCYIENTVQANLLAATAGLDARNQV--YNIAVGGRTSLNQLF 275
Query: 62 RTFERVTGK-----PVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
+ + REGD+ A+ A + LG++ + V
Sbjct: 276 FALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPKYDVSAGVA 330
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 363
Score = 60.3 bits (145), Expect = 1e-12
Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 6/99 (6%)
Query: 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV 72
DG R + + + G + E N+G+ + S+ ++ K +
Sbjct: 226 DGLQTRSFTFIDECVEGVLRLTKSDFREP-----VNIGSDEMVSMNEMAEMVLSFEEKKL 280
Query: 73 PYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
P I + ++ +L + +LGW+ +++ +
Sbjct: 281 P-IHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLR 318
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 321
Score = 59.2 bits (142), Expect = 3e-12
Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 9/103 (8%)
Query: 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV 72
+ RD+ D L + + + Y + TG T+V + + G
Sbjct: 211 NVDAKRDWGFAGDYVEAMWLMLQQDKADD-----YVVATGVTTTVRDMCQIAFEHVGLDY 265
Query: 73 PYIVE----ARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
++ R ++ + N AQR LGW R +++++ +
Sbjct: 266 RDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIR 308
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli
[TaxId: 562]}
Length = 357
Score = 55.2 bits (132), Expect = 6e-11
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 36/130 (27%)
Query: 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV 72
+ +RD+ H D L + Q E + + TG SV Q + G +
Sbjct: 219 NMDSLRDWGHAKDYVKMQWMMLQQEQPED-----FVIATGVQYSVRQFVEMAAAQLGIKL 273
Query: 73 PYIVE-------------------------------ARREGDIVSMYANTDLAQRELGWS 101
+ R ++ ++ + A +LGW
Sbjct: 274 RFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWK 333
Query: 102 ARCTVEKMCK 111
T+ +M
Sbjct: 334 PEITLREMVS 343
>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces
salmonicolor [TaxId: 5005]}
Length = 342
Score = 54.0 bits (128), Expect = 2e-10
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 5/112 (4%)
Query: 1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQL 60
M G + Y+ +D+ + H+ L Q + GT +
Sbjct: 227 MSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQ----IERRRVYGTAGTFDWNTV 282
Query: 61 LRTF-ERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
L TF + K P + + A + + LG ++E+ K
Sbjct: 283 LATFRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIK 334
>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose
epimerase/reductase (GDP-fucose synthetase) {Escherichia
coli [TaxId: 562]}
Length = 315
Score = 53.0 bits (126), Expect = 4e-10
Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFY-----NLGTGQGTSVLQLLRTFERV 67
GT +R+++HV D+A + + L+ N+GTG ++ +L +T +V
Sbjct: 203 SGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKV 262
Query: 68 TGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
G + +A + + +LGW ++E
Sbjct: 263 VGYKGRVVFDASKPDGTPRKLLDVTRL-HQLGWYHEISLEAGLA 305
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 346
Score = 51.9 bits (123), Expect = 9e-10
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 10/111 (9%)
Query: 2 ITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLL 61
++G +G +RD+IH D + G A L K + + + G VL+L
Sbjct: 213 PKLYG------EGKNVRDWIHTNDHSTGVWAILTKGRMGETYLIGAD-GEKNNKEVLEL- 264
Query: 62 RTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCT-VEKMCK 111
E++ Y R G + + + ELGW+ + T + +
Sbjct: 265 -ILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLE 314
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 347
Score = 46.1 bits (108), Expect = 1e-07
Identities = 14/121 (11%), Positives = 39/121 (32%), Gaps = 10/121 (8%)
Query: 1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEH--------LKIKFYNLGT- 51
G D +DY+ M L + + + + ++ F ++G
Sbjct: 214 ECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKT 273
Query: 52 -GQGTSVLQLLRTFERVTGKPVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMC 110
+ + V ++ R ++ + + A+++L W R +++
Sbjct: 274 IVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELV 333
Query: 111 K 111
+
Sbjct: 334 R 334
>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA
{Aspergillus nidulans [TaxId: 162425]}
Length = 350
Score = 42.7 bits (99), Expect = 2e-06
Identities = 9/72 (12%), Positives = 19/72 (26%), Gaps = 2/72 (2%)
Query: 4 VFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRT 63
F + + D+ + + L + S +Q+
Sbjct: 172 TFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKW-NGHRIALT-FETLSPVQVCAA 229
Query: 64 FERVTGKPVPYI 75
F R + V Y+
Sbjct: 230 FSRALNRRVTYV 241
>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant
arborvitae (Thuja plicata) [TaxId: 3316]}
Length = 312
Score = 42.5 bits (98), Expect = 2e-06
Identities = 10/75 (13%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQL 60
M+ DG ++ D+ + +++ + L Y S ++
Sbjct: 174 MMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSID--DPQTLNKTMYIRPPMNILSQKEV 231
Query: 61 LRTFERVTGKPVPYI 75
++ +ER++ + + I
Sbjct: 232 IQIWERLSEQNLDKI 246
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 339
Score = 42.0 bits (97), Expect = 3e-06
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 1/99 (1%)
Query: 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV 72
+ RD+ D L + + + + G + V
Sbjct: 221 NLQASRDWGFAGDYVEAMWLMLQQEKPDD-YVVATEEGHTVEEFLDVSFGYLGLNWKDYV 279
Query: 73 PYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
R ++ ++ + A+ LGW + EK+ K
Sbjct: 280 EIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEKLVK 318
>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 393
Score = 41.5 bits (95), Expect = 5e-06
Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 14/116 (12%)
Query: 1 MITVFGADYGTEDGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQL 60
+TV+G T IRD + +++A+ + + SV +L
Sbjct: 252 PLTVYGKGGQTRGYLDIRDTVQCVEIAIANP--------AKAGEFRVFNQFTEQFSVNEL 303
Query: 61 LRTFERVTGK-----PVPYIVEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
+ K + R E + A ELG + +
Sbjct: 304 ASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKL-MELGLEPHYLSDSLLD 358
>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia
pseudotuberculosis [TaxId: 633]}
Length = 356
Score = 39.1 bits (89), Expect = 3e-05
Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 64 FERVTGKPVPYIVEA-RREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
+ G+ + ++ + + + A+ +LGW R + +
Sbjct: 278 MVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPRWNLNTTLE 326
>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240
(T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 252
Score = 38.3 bits (87), Expect = 5e-05
Identities = 9/57 (15%), Positives = 18/57 (31%)
Query: 14 GTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGK 70
+ D+A + AL + ++ + G T F +VT +
Sbjct: 195 LQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 251
>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA
(PrmI) {Escherichia coli [TaxId: 562]}
Length = 342
Score = 35.7 bits (80), Expect = 5e-04
Identities = 11/114 (9%), Positives = 23/114 (20%), Gaps = 15/114 (13%)
Query: 13 DGTGIRDYIHVMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSVLQLLRTFERVTGKPV 72
G R + + D + S+ +L K
Sbjct: 215 GGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHP 274
Query: 73 PYI---------------VEARREGDIVSMYANTDLAQRELGWSARCTVEKMCK 111
+ D+ + A R L W + +++
Sbjct: 275 LRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETID 328
>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 205
Score = 26.5 bits (57), Expect = 0.76
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 11 TEDGTGIRDYIHVMDLAVGHVAALNK 36
T DG G I DL + L
Sbjct: 166 TLDGRGPSRVISKHDLGHFMLRCLTT 191
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 301
Score = 24.2 bits (52), Expect = 4.4
Identities = 5/19 (26%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 31 VAALNKLQGEHLKI--KFY 47
+ +L LQ E ++ +F
Sbjct: 27 LLSLKTLQSELFEVEKEFQ 45
>d1o9ya_ b.139.1.1 (A:) Structural protein HrcQ2, C-terminal
domain {Pseudomonas syringae [TaxId: 317]}
Length = 71
Score = 23.1 bits (50), Expect = 5.3
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 23 VMDLAVGHVAALNKLQGEHLKIKFYNLGTGQGTSV 57
+ L G + + + H + +G V
Sbjct: 23 LRRLDAGTILEVTGISPGHATLCHGEQVVAEGELV 57
>d1o6aa_ b.139.1.1 (A:) Putative flagelar motor switch protein
FliN {Thermotoga maritima [TaxId: 2336]}
Length = 87
Score = 23.0 bits (50), Expect = 5.9
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 23 VMDLAVGHVAALNKLQGEHLKIK 45
V+++ G + L+KL GE + I
Sbjct: 28 VLEMIHGSIIELDKLTGEPVDIL 50
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.410
Gapped
Lambda K H
0.267 0.0369 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 425,838
Number of extensions: 17862
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 27
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.9 bits)