Query psy16549
Match_columns 60
No_of_seqs 99 out of 115
Neff 4.8
Searched_HMMs 46136
Date Sat Aug 17 00:03:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1330|consensus 98.9 5.8E-10 1.3E-14 84.9 3.7 52 1-57 247-298 (493)
2 COG3312 AtpI F0F1-type ATP syn 55.2 7.1 0.00015 25.7 1.2 42 7-48 36-78 (128)
3 TIGR01605 PYST-D Plasmodium yo 33.0 20 0.00043 20.5 0.6 17 44-60 9-25 (55)
4 PF11880 DUF3400: Domain of un 28.5 44 0.00095 18.4 1.5 12 19-30 26-37 (45)
5 PF03137 OATP: Organic Anion T 27.5 20 0.00044 27.4 0.0 45 1-52 308-352 (539)
6 PF07379 DUF1494: Protein of u 27.4 55 0.0012 22.5 2.1 19 5-23 12-30 (170)
7 PF03203 MerC: MerC mercury re 24.4 56 0.0012 20.0 1.6 44 17-60 70-113 (116)
8 KOG4721|consensus 24.3 64 0.0014 27.0 2.2 35 7-50 266-300 (904)
9 cd08766 Cyt_b561_ACYB-1_like P 23.1 41 0.00088 21.9 0.8 55 3-59 84-139 (144)
10 PF13706 PepSY_TM_3: PepSY-ass 22.0 1.2E+02 0.0027 15.1 2.4 18 6-23 17-34 (37)
11 KOG3243|consensus 21.6 26 0.00057 23.7 -0.3 14 41-54 112-125 (158)
No 1
>KOG1330|consensus
Probab=98.95 E-value=5.8e-10 Score=84.95 Aligned_cols=52 Identities=21% Similarity=0.414 Sum_probs=45.8
Q ss_pred CchhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCCCCCCCcceeehHHHHhhhhh
Q psy16549 1 MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDETYLTIDYRLSILQHL 57 (60)
Q Consensus 1 v~sTlG~TavaFvtGALa~W~P~fi~~a~~~~~~~~~c~~~d~sliFG~IT~i~~~~ 57 (60)
+.+|+|+++..||+|+++||+|+++++..++++ + +.+.+++||.|||+.|-+
T Consensus 247 v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~----~-~~~~~~ifg~vt~~~G~l 298 (493)
T KOG1330|consen 247 VLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIG----F-DHNATLIFGGVTCAGGSL 298 (493)
T ss_pred eeehHHHHHHHHhccccchhhhhHHHHHHHHhC----C-ccccchhhhhHHHhhchh
Confidence 368999999999999999999999999999987 2 234699999999998864
No 2
>COG3312 AtpI F0F1-type ATP synthase, subunit I [Energy production and conversion]
Probab=55.21 E-value=7.1 Score=25.73 Aligned_cols=42 Identities=17% Similarity=0.095 Sum_probs=26.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhhcCCCCCCCCCc-ceeeh
Q psy16549 7 FTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDET-YLTID 48 (60)
Q Consensus 7 ~TavaFvtGALa~W~P~fi~~a~~~~~~~~~c~~~d~-sliFG 48 (60)
.-.++++.|-++.|.|..+.---+..+..++-..+-+ |+.||
T Consensus 36 ~~~vSal~Ggla~~LP~~~F~~~af~f~~~~f~~~~~~sFy~G 78 (128)
T COG3312 36 QWGVSALLGGLAAFLPNCLFVLFAFRFRGQTFAKGRVASFYFG 78 (128)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHh
Confidence 3578999999999999987655444432222222222 56666
No 3
>TIGR01605 PYST-D Plasmodium yoelii subtelomeric family PYST-D. This model represents a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. These genes are generally very short (ca. 50 residues). There are no obvious homologs to these genes in any other organism.
Probab=33.01 E-value=20 Score=20.49 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=14.6
Q ss_pred ceeehHHHHhhhhhhcC
Q psy16549 44 YLTIDYRLSILQHLLKY 60 (60)
Q Consensus 44 sliFG~IT~i~~~~~~~ 60 (60)
..|||+=.+|+-||..|
T Consensus 9 epiFgLglsi~lhlify 25 (55)
T TIGR01605 9 EPIFGLGLSITLHLIFY 25 (55)
T ss_pred ccceehhhHHhhHhhhh
Confidence 46899999999999865
No 4
>PF11880 DUF3400: Domain of unknown function (DUF3400); InterPro: IPR021817 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 50 amino acids in length. This domain is found associated with PF02754 from PFAM, PF02913 from PFAM, PF01565 from PFAM.
Probab=28.52 E-value=44 Score=18.40 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHH
Q psy16549 19 WFGPHYLELGVN 30 (60)
Q Consensus 19 ~W~P~fi~~a~~ 30 (60)
=|.|.|+.+|+.
T Consensus 26 ~W~~~~v~~a~~ 37 (45)
T PF11880_consen 26 NWQQDYVERANN 37 (45)
T ss_pred hHHHHHHHHHHc
Confidence 399999998864
No 5
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=27.50 E-value=20 Score=27.42 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCCCCCCCcceeehHHHH
Q psy16549 1 MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDETYLTIDYRLS 52 (60)
Q Consensus 1 v~sTlG~TavaFvtGALa~W~P~fi~~a~~~~~~~~~c~~~d~sliFG~IT~ 52 (60)
|+.+++.+.-.++.-.++-..|+|+|...... ..+.+++.|++.+
T Consensus 308 ~~~~la~~~~~~~~~G~~tF~pKylE~QF~~s-------as~A~~l~G~v~i 352 (539)
T PF03137_consen 308 MCLILAGVFESFIVSGFATFLPKYLESQFGLS-------ASQASLLTGIVSI 352 (539)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------HHHHHHHHhhhhc
Confidence 45678888999999999999999999655432 2334777777655
No 6
>PF07379 DUF1494: Protein of unknown function (DUF1494); InterPro: IPR009968 This family consists of several bacterial proteins of around 175 residues in length. Members of this family seem to be found exclusively in Chlamydia species. The function of this family is unknown.
Probab=27.39 E-value=55 Score=22.53 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhhhhHHHH
Q psy16549 5 LGFTCVAFVTGALAWFGPH 23 (60)
Q Consensus 5 lG~TavaFvtGALa~W~P~ 23 (60)
++.|-+++..|+|++|--.
T Consensus 12 Is~tL~alLlgvLg~w~R~ 30 (170)
T PF07379_consen 12 ISMTLIALLLGVLGFWYRE 30 (170)
T ss_pred HHHHHHHHHHHhhhHHHHH
Confidence 4678889999999999753
No 7
>PF03203 MerC: MerC mercury resistance protein
Probab=24.37 E-value=56 Score=20.00 Aligned_cols=44 Identities=27% Similarity=0.261 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCCCCCcceeehHHHHhhhhhhcC
Q psy16549 17 LAWFGPHYLELGVNLQEGHENVSMDETYLTIDYRLSILQHLLKY 60 (60)
Q Consensus 17 La~W~P~fi~~a~~~~~~~~~c~~~d~sliFG~IT~i~~~~~~~ 60 (60)
+++-++..+..+.-..+..++-..++.-.+.|.+..+..|+..|
T Consensus 70 l~~~G~~ll~~~~~~~~~~~~~~~e~~lt~~G~~lLi~aH~~N~ 113 (116)
T PF03203_consen 70 LGVIGLALLLLALFLGESYEGEHGETVLTYIGALLLIAAHIWNY 113 (116)
T ss_pred HHHHHHHHHHHHHHhcchhcchhhhHHHHHHHHHHHHHHHHHHh
Confidence 33444444444443333332211123467789999999998764
No 8
>KOG4721|consensus
Probab=24.33 E-value=64 Score=26.99 Aligned_cols=35 Identities=23% Similarity=0.437 Sum_probs=24.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhhcCCCCCCCCCcceeehHH
Q psy16549 7 FTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDETYLTIDYR 50 (60)
Q Consensus 7 ~TavaFvtGALa~W~P~fi~~a~~~~~~~~~c~~~d~sliFG~I 50 (60)
+|-++| .|..+|=+|-.|. ++||++.-+=.-||++
T Consensus 266 STkMSF-aGTVaWMAPEvIr--------nePcsEKVDIwSfGVV 300 (904)
T KOG4721|consen 266 STKMSF-AGTVAWMAPEVIR--------NEPCSEKVDIWSFGVV 300 (904)
T ss_pred hhhhhh-hhhHhhhCHHHhh--------cCCcccccceehhHHH
Confidence 566777 4999999998773 4567665445667765
No 9
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=23.12 E-value=41 Score=21.92 Aligned_cols=55 Identities=11% Similarity=0.017 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHh-hcCCCCCCCCCcceeehHHHHhhhhhhc
Q psy16549 3 TTLGFTCVAFVTGALAWFGPHYLELGVNL-QEGHENVSMDETYLTIDYRLSILQHLLK 59 (60)
Q Consensus 3 sTlG~TavaFvtGALa~W~P~fi~~a~~~-~~~~~~c~~~d~sliFG~IT~i~~~~~~ 59 (60)
.|+...+.-++.|..++|.|.--...|+. .+.+. -..-.-+..++.||++|-+-|
T Consensus 84 ~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~--~~G~~~~~la~~t~~lGl~ek 139 (144)
T cd08766 84 GTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHV--FLGLAIYYLAIATAETGLLEK 139 (144)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 46667778899999999999843222211 11110 001135667777888776654
No 10
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=22.00 E-value=1.2e+02 Score=15.13 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhhhhHHHH
Q psy16549 6 GFTCVAFVTGALAWFGPH 23 (60)
Q Consensus 6 G~TavaFvtGALa~W~P~ 23 (60)
-.-.+.|.+|++..|-|.
T Consensus 17 ~~l~~~~~tG~~~~f~~e 34 (37)
T PF13706_consen 17 LLLFVIFLTGAVMVFRDE 34 (37)
T ss_pred HHHHHHHHHhHHHHHHHh
Confidence 355688999999988764
No 11
>KOG3243|consensus
Probab=21.60 E-value=26 Score=23.67 Aligned_cols=14 Identities=0% Similarity=-0.263 Sum_probs=11.7
Q ss_pred CCcceeehHHHHhh
Q psy16549 41 DETYLTIDYRLSIL 54 (60)
Q Consensus 41 ~d~sliFG~IT~i~ 54 (60)
++++-|||++||..
T Consensus 112 sgvPvIfGlLTc~~ 125 (158)
T KOG3243|consen 112 SGVPVIFGLLTCED 125 (158)
T ss_pred CCCCEEEEEeeecc
Confidence 34799999999975
Done!