Query psy16549
Match_columns 60
No_of_seqs 99 out of 115
Neff 4.8
Searched_HMMs 29240
Date Sat Aug 17 00:03:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 18.6 47 0.0016 16.1 1.0 11 16-26 20-30 (32)
2 1yew_A Particulate methane mon 11.7 78 0.0027 23.2 1.1 38 17-54 171-214 (382)
3 1f16_A Protein (apoptosis regu 10.3 1.8E+02 0.0062 18.5 2.4 19 2-20 170-188 (192)
4 2kwt_A Protease NS2-3; NS2 dom 10.3 2E+02 0.0068 14.1 2.9 22 17-38 7-29 (33)
5 2jp3_A FXYD domain-containing 10.1 70 0.0024 18.1 0.3 15 44-58 21-35 (67)
6 2g48_C Islet amyloid polypepti 9.9 82 0.0028 15.8 0.5 9 50-58 5-13 (37)
7 2jo1_A Phospholemman; FXYD1, N 9.7 75 0.0026 18.2 0.3 15 44-58 20-34 (72)
8 2zxe_G FXYD10, phospholemman-l 8.4 91 0.0031 17.9 0.3 16 43-58 22-37 (74)
9 1bku_A Calcitonin; hormone, ca 8.3 1.2E+02 0.004 14.8 0.6 9 50-58 5-13 (33)
10 2jxz_A Calcitonin; A-helix, am 8.2 1.2E+02 0.004 14.8 0.6 10 49-58 4-13 (33)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=18.64 E-value=47 Score=16.12 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=9.0
Q ss_pred hhhhHHHHHHH
Q psy16549 16 ALAWFGPHYLE 26 (60)
Q Consensus 16 ALa~W~P~fi~ 26 (60)
|.|+|.-+|++
T Consensus 20 afgfwlfkylq 30 (32)
T 2lx0_A 20 AFGFWLFKYLQ 30 (32)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 67899988875
No 2
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=11.70 E-value=78 Score=23.24 Aligned_cols=38 Identities=8% Similarity=0.246 Sum_probs=25.1
Q ss_pred hhhHH--HHHHHHHHHhhcCCCCC--CCCC--cceeehHHHHhh
Q psy16549 17 LAWFG--PHYLELGVNLQEGHENV--SMDE--TYLTIDYRLSIL 54 (60)
Q Consensus 17 La~W~--P~fi~~a~~~~~~~~~c--~~~d--~sliFG~IT~i~ 54 (60)
|.||. |.|+.|...+.-+.++- ...| +.++|-+.|++.
T Consensus 171 ll~W~~rp~fipR~~~v~ag~~~~Lit~~Drkv~~~~~~~t~~l 214 (382)
T 1yew_A 171 IGYWSRRPIFIPRLLMVDAGRADELVSATDRKVAMGFLAATILI 214 (382)
T ss_dssp HHHHHSSCCSHHHHHHHHSSCSCTTSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchhhHHHHhccCcccccCcccceehhHHHHHHHHH
Confidence 78998 77999998887755432 3333 566666666553
No 3
>1f16_A Protein (apoptosis regulator BAX, membrane isoform alpha); helical protein; NMR {Homo sapiens} SCOP: f.1.4.1 PDB: 2k7w_A
Probab=10.30 E-value=1.8e+02 Score=18.52 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=13.7
Q ss_pred chhHHHHHHHHHHhhhhhH
Q psy16549 2 FTTLGFTCVAFVTGALAWF 20 (60)
Q Consensus 2 ~sTlG~TavaFvtGALa~W 20 (60)
|.|++.++..+.+|+|..|
T Consensus 170 w~~~~~~~agv~~~~l~~~ 188 (192)
T 1f16_A 170 WQTVTIFVAGVLTASLTIW 188 (192)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 4566677777778888777
No 4
>2kwt_A Protease NS2-3; NS2 domain, membrane protein, viral prote; NMR {Hepatitis c virus}
Probab=10.26 E-value=2e+02 Score=14.07 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHhhc-CCCCC
Q psy16549 17 LAWFGPHYLELGVNLQE-GHENV 38 (60)
Q Consensus 17 La~W~P~fi~~a~~~~~-~~~~c 38 (60)
+=||.--||.|+.+..+ ..||.
T Consensus 7 ~lWWlqYfi~R~EA~l~vWvPpL 29 (33)
T 2kwt_A 7 LIWWLQYFITRAEAHLQVWIPPL 29 (33)
T ss_dssp THHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHHHHHHHHHHhhCCCC
Confidence 34899999999977666 55554
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=10.15 E-value=70 Score=18.07 Aligned_cols=15 Identities=27% Similarity=0.020 Sum_probs=11.8
Q ss_pred ceeehHHHHhhhhhh
Q psy16549 44 YLTIDYRLSILQHLL 58 (60)
Q Consensus 44 sliFG~IT~i~~~~~ 58 (60)
.|||.++.|+.+-++
T Consensus 21 GLifA~vLfi~GI~i 35 (67)
T 2jp3_A 21 GLIFGGLLCIAGIAL 35 (67)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHH
Confidence 788888888887654
No 6
>2g48_C Islet amyloid polypeptide; protein-peptide complex, hydrolase; 2.60A {Homo sapiens} PDB: 2kb8_A 3hgz_D 2l86_A 2kj7_A
Probab=9.95 E-value=82 Score=15.82 Aligned_cols=9 Identities=22% Similarity=0.084 Sum_probs=6.8
Q ss_pred HHHhhhhhh
Q psy16549 50 RLSILQHLL 58 (60)
Q Consensus 50 IT~i~~~~~ 58 (60)
-||++|.|-
T Consensus 5 aTC~t~rla 13 (37)
T 2g48_C 5 ATCATQRLA 13 (37)
T ss_pred hhhHHHHHH
Confidence 489998874
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=9.66 E-value=75 Score=18.21 Aligned_cols=15 Identities=40% Similarity=0.226 Sum_probs=11.5
Q ss_pred ceeehHHHHhhhhhh
Q psy16549 44 YLTIDYRLSILQHLL 58 (60)
Q Consensus 44 sliFG~IT~i~~~~~ 58 (60)
.|||+++.|+.+-++
T Consensus 20 GLifA~vLfi~GI~i 34 (72)
T 2jo1_A 20 GLVIAGILFILGILI 34 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 788888888887653
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=8.36 E-value=91 Score=17.92 Aligned_cols=16 Identities=13% Similarity=0.218 Sum_probs=12.5
Q ss_pred cceeehHHHHhhhhhh
Q psy16549 43 TYLTIDYRLSILQHLL 58 (60)
Q Consensus 43 ~sliFG~IT~i~~~~~ 58 (60)
-.|||++|.|+.+-++
T Consensus 22 gGLifA~vLfi~GI~i 37 (74)
T 2zxe_G 22 VGLIVAAVLCVIGIII 37 (74)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHH
Confidence 3788999998888654
No 9
>1bku_A Calcitonin; hormone, calcium-regulating hormone; NMR {Anguilla japonica} SCOP: j.6.1.1 PDB: 1byv_A* 1bzb_A* 2glh_A 1fb9_A* 2glg_A
Probab=8.25 E-value=1.2e+02 Score=14.78 Aligned_cols=9 Identities=22% Similarity=0.268 Sum_probs=6.7
Q ss_pred HHHhhhhhh
Q psy16549 50 RLSILQHLL 58 (60)
Q Consensus 50 IT~i~~~~~ 58 (60)
-||++|.|-
T Consensus 5 sTCvt~~la 13 (33)
T 1bku_A 5 STCVLGKLS 13 (33)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 489988764
No 10
>2jxz_A Calcitonin; A-helix, amidation, cleavage on PAIR of basic residues, HORM secreted; NMR {Synthetic}
Probab=8.16 E-value=1.2e+02 Score=14.76 Aligned_cols=10 Identities=20% Similarity=0.218 Sum_probs=7.2
Q ss_pred HHHHhhhhhh
Q psy16549 49 YRLSILQHLL 58 (60)
Q Consensus 49 ~IT~i~~~~~ 58 (60)
.-||++|.|-
T Consensus 4 ~sTCvt~~la 13 (33)
T 2jxz_A 4 LSTCMLGTLT 13 (33)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 3589988764
Done!