Query psy16549
Match_columns 60
No_of_seqs 99 out of 115
Neff 4.8
Searched_HMMs 13730
Date Sat Aug 17 00:03:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16549.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16549hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ijdb_ f.3.1.1 (B:) Light-har 24.9 9.8 0.00071 18.5 0.5 14 44-57 20-33 (40)
2 d1nkzb_ f.3.1.1 (B:) Light-har 22.9 11 0.00082 18.3 0.5 14 44-57 19-32 (41)
3 d2p7tc1 f.14.1.1 (C:86-119) Po 19.2 43 0.0031 15.3 2.2 18 4-21 12-29 (34)
4 d1et9a1 b.40.2.2 (A:1-95) Stre 7.9 22 0.0016 19.6 -1.1 9 52-60 33-41 (95)
5 d1sqwa1 b.122.1.1 (A:95-170) N 7.0 44 0.0032 17.9 -0.1 17 39-55 41-57 (76)
6 d2nllb_ g.39.1.2 (B:) Thyroid 7.0 32 0.0023 18.8 -0.7 16 38-53 7-22 (103)
7 d2guka1 d.360.1.1 (A:4-114) Hy 6.6 67 0.0049 18.3 0.6 18 37-54 52-70 (111)
8 d1di0a_ c.16.1.1 (A:) Lumazine 6.6 33 0.0024 20.0 -0.9 12 42-53 98-109 (148)
9 d1a6ya_ g.39.1.2 (A:) Orphan n 6.1 37 0.0027 17.7 -0.8 17 38-54 6-22 (78)
10 d2hanb1 g.39.1.2 (B:5-87) Ecdy 6.0 37 0.0027 17.9 -0.8 17 38-54 6-22 (83)
No 1
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=24.88 E-value=9.8 Score=18.48 Aligned_cols=14 Identities=14% Similarity=-0.064 Sum_probs=10.5
Q ss_pred ceeehHHHHhhhhh
Q psy16549 44 YLTIDYRLSILQHL 57 (60)
Q Consensus 44 sliFG~IT~i~~~~ 57 (60)
.=+||+|.+++..|
T Consensus 20 tRvF~~iA~~AH~L 33 (40)
T d1ijdb_ 20 TRVFLVIAAIAHFL 33 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 34699999998654
No 2
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=22.93 E-value=11 Score=18.34 Aligned_cols=14 Identities=7% Similarity=-0.225 Sum_probs=10.5
Q ss_pred ceeehHHHHhhhhh
Q psy16549 44 YLTIDYRLSILQHL 57 (60)
Q Consensus 44 sliFG~IT~i~~~~ 57 (60)
.=+||+|.+++..|
T Consensus 19 tRvF~~iA~~AH~L 32 (41)
T d1nkzb_ 19 TRVFLGLALVAHFL 32 (41)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 34699999988654
No 3
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=19.18 E-value=43 Score=15.28 Aligned_cols=18 Identities=39% Similarity=0.403 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHhhhhhHH
Q psy16549 4 TLGFTCVAFVTGALAWFG 21 (60)
Q Consensus 4 TlG~TavaFvtGALa~W~ 21 (60)
..|.|....|+.|++-|.
T Consensus 12 vagits~glv~aa~atwf 29 (34)
T d2p7tc1 12 VAGITSFGLVTAALATWF 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EeccchhhhHHHHHHHHh
Confidence 367888888888988884
No 4
>d1et9a1 b.40.2.2 (A:1-95) Streptococcal superantigen Spe-H {Streptococcus pyogenes [TaxId: 1314]}
Probab=7.85 E-value=22 Score=19.59 Aligned_cols=9 Identities=44% Similarity=0.888 Sum_probs=6.5
Q ss_pred HhhhhhhcC
Q psy16549 52 SILQHLLKY 60 (60)
Q Consensus 52 ~i~~~~~~~ 60 (60)
+++.|+|||
T Consensus 33 ivtshmlky 41 (95)
T d1et9a1 33 IVTSHMLKY 41 (95)
T ss_dssp CCCTTEEEE
T ss_pred HHHHHHhhh
Confidence 467788876
No 5
>d1sqwa1 b.122.1.1 (A:95-170) Nip7p homolog, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.99 E-value=44 Score=17.93 Aligned_cols=17 Identities=24% Similarity=0.120 Sum_probs=12.1
Q ss_pred CCCCcceeehHHHHhhh
Q psy16549 39 SMDETYLTIDYRLSILQ 55 (60)
Q Consensus 39 ~~~d~sliFG~IT~i~~ 55 (60)
+.+|+.|-||+-.-=|+
T Consensus 41 sm~D~PLGFGvaakst~ 57 (76)
T d1sqwa1 41 SMADIPLGFGVAAKSTQ 57 (76)
T ss_dssp ETTCCEEEEEEESSCHH
T ss_pred eCCCCccceeeeccCHH
Confidence 56778999997554444
No 6
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta) DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.95 E-value=32 Score=18.79 Aligned_cols=16 Identities=6% Similarity=-0.240 Sum_probs=10.9
Q ss_pred CCCCCcceeehHHHHh
Q psy16549 38 VSMDETYLTIDYRLSI 53 (60)
Q Consensus 38 c~~~d~sliFG~IT~i 53 (60)
|......+-||+++|=
T Consensus 7 Cg~~a~g~HfGv~sC~ 22 (103)
T d2nllb_ 7 CGDKATGYHYRCITCE 22 (103)
T ss_dssp TCSBCCSEETTEECCH
T ss_pred CCCcCCcccCchhhhH
Confidence 3333458889999874
No 7
>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857 {Porphyromonas gingivalis [TaxId: 837]}
Probab=6.60 E-value=67 Score=18.28 Aligned_cols=18 Identities=11% Similarity=0.098 Sum_probs=12.0
Q ss_pred CCC-CCCcceeehHHHHhh
Q psy16549 37 NVS-MDETYLTIDYRLSIL 54 (60)
Q Consensus 37 ~c~-~~d~sliFG~IT~i~ 54 (60)
+++ .+.+|+.||---||.
T Consensus 52 ~v~~~~kvNlFFG~~~ci~ 70 (111)
T d2guka1 52 PTPNTERTNLFFGCKECME 70 (111)
T ss_dssp CCTTSSEEEEEEECHHHHH
T ss_pred EcCCCCeEEEEeCCHHHHH
Confidence 453 345899999666653
No 8
>d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId: 235]}
Probab=6.58 E-value=33 Score=19.96 Aligned_cols=12 Identities=8% Similarity=-0.277 Sum_probs=9.5
Q ss_pred CcceeehHHHHh
Q psy16549 42 ETYLTIDYRLSI 53 (60)
Q Consensus 42 d~sliFG~IT~i 53 (60)
+++.+||++||=
T Consensus 98 ~~Pv~~gVLt~~ 109 (148)
T d1di0a_ 98 EVPVLSVVLTPH 109 (148)
T ss_dssp CCCEEEEEECBS
T ss_pred CCcEEEEeccCC
Confidence 368899999873
No 9
>d1a6ya_ g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.05 E-value=37 Score=17.69 Aligned_cols=17 Identities=0% Similarity=-0.357 Sum_probs=11.1
Q ss_pred CCCCCcceeehHHHHhh
Q psy16549 38 VSMDETYLTIDYRLSIL 54 (60)
Q Consensus 38 c~~~d~sliFG~IT~i~ 54 (60)
|......+-||+++|-+
T Consensus 6 Cg~~a~g~hyGv~sC~a 22 (78)
T d1a6ya_ 6 CGDVASGFHYGVLACEG 22 (78)
T ss_dssp TSSBCCEEETTEEECHH
T ss_pred CCCcCCcccCcchhhhh
Confidence 43334578899988743
No 10
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.98 E-value=37 Score=17.91 Aligned_cols=17 Identities=0% Similarity=-0.328 Sum_probs=11.0
Q ss_pred CCCCCcceeehHHHHhh
Q psy16549 38 VSMDETYLTIDYRLSIL 54 (60)
Q Consensus 38 c~~~d~sliFG~IT~i~ 54 (60)
|......+-||+++|=+
T Consensus 6 Cg~~~~g~hyGv~sC~a 22 (83)
T d2hanb1 6 CGDRASGYHYNALTCEG 22 (83)
T ss_dssp TCSBCCEEETTEEECHH
T ss_pred CCCcCCccCcCHHhHhH
Confidence 33334578899988743
Done!