RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16549
         (60 letters)



>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis,
           ATP-binding, hydrogen ION TRA hydrolase, ION transport;
           2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D
           3j0j_D*
          Length = 464

 Score = 24.3 bits (53), Expect = 2.9
 Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 7/29 (24%)

Query: 31  LQEGHENVSMDETYLTIDYRLSILQHLLK 59
           + +G +N S++E+       L I   LL 
Sbjct: 423 INQGQQNRSIEES-------LQIAWALLS 444


>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG,
           PSI, midwest center for struct genomics; 2.30A {Bacillus
           cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
          Length = 385

 Score = 24.4 bits (53), Expect = 2.9
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 1   MFTTLGFTCVAFVTGALAWFGPHYLELG 28
            F   G    AF+T  +A  GP  +  G
Sbjct: 192 RFKKHGIRSAAFITSHVANIGPWDINDG 219


>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
           cell adhesion, cell J glycoprotein, membrane,
           postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
           norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
           2vh8_A 3bl8_A*
          Length = 574

 Score = 23.2 bits (50), Expect = 6.2
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 11/47 (23%)

Query: 11  AFVTGALAWFGPHYLELGVNLQEGHENVSMDETYLTIDYRLSILQHL 57
           +++ G    +    L         + NV      +T++YRL +L  L
Sbjct: 141 SYMEGTGNLYDGSVLAS-------YGNV----IVITVNYRLGVLGFL 176


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.142    0.445 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 922,487
Number of extensions: 38938
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 4
Length of query: 60
Length of database: 6,701,793
Length adjustment: 31
Effective length of query: 29
Effective length of database: 5,836,242
Effective search space: 169251018
Effective search space used: 169251018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.5 bits)