RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16549
         (60 letters)



>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain
           {Bacillus cereus [TaxId: 1396]}
          Length = 244

 Score = 25.8 bits (57), Expect = 0.26
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 1   MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMD 41
            F   G    AF+T  +A  GP  +  G+   E H N+ ++
Sbjct: 168 RFKKHGIRSAAFITSHVANIGPWDINDGLCTLEEHRNLPIE 208


>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1
           (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 343

 Score = 23.7 bits (51), Expect = 1.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 48  DYRLSILQHLL 58
            + LSILQHLL
Sbjct: 267 PHFLSILQHLL 277


>d1ae9a_ d.163.1.1 (A:) Integrase (Int) {Bacteriophage lambda
           [TaxId: 10710]}
          Length = 179

 Score = 22.9 bits (47), Expect = 3.3
 Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 5/34 (14%)

Query: 17  LAWFGPHYLELGVNLQE-----GHENVSMDETYL 45
           L        E  ++ +      GH++ +M   + 
Sbjct: 134 LRSLSARLYEKQISDKFAQHLLGHKSDTMASQFR 167


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.142    0.445 

Gapped
Lambda     K      H
   0.267   0.0584    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 219,822
Number of extensions: 6752
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 4
Length of query: 60
Length of database: 2,407,596
Length adjustment: 30
Effective length of query: 30
Effective length of database: 1,995,696
Effective search space: 59870880
Effective search space used: 59870880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.2 bits)