Query psy16551
Match_columns 281
No_of_seqs 235 out of 1469
Neff 8.1
Searched_HMMs 29240
Date Sat Aug 17 00:06:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 100.0 1.7E-30 5.8E-35 219.3 9.9 175 95-272 7-188 (192)
2 2xjy_A Rhombotin-2; oncoprotei 99.9 2.8E-28 9.6E-33 193.3 3.8 127 95-262 2-131 (131)
3 1rut_X Flinc4, fusion protein 99.9 7.7E-28 2.6E-32 202.4 5.0 134 94-268 4-140 (188)
4 2xqn_T Testin, TESS; metal-bin 99.9 3.3E-27 1.1E-31 185.9 5.9 121 95-259 3-126 (126)
5 2rgt_A Fusion of LIM/homeobox 99.9 2.1E-26 7.2E-31 190.4 6.9 124 95-262 6-131 (169)
6 2jtn_A LIM domain-binding prot 99.9 6.4E-26 2.2E-30 189.7 8.1 121 93-257 58-180 (182)
7 2cup_A Skeletal muscle LIM-pro 99.9 3.7E-23 1.2E-27 156.5 6.5 96 94-232 4-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.8 2.6E-20 8.7E-25 145.7 5.0 113 94-262 4-118 (122)
9 2ehe_A Four and A half LIM dom 99.8 3.6E-19 1.2E-23 129.4 4.4 80 142-264 1-81 (82)
10 1x3h_A Leupaxin; paxillin fami 99.8 5.9E-19 2E-23 127.5 5.0 79 142-264 1-79 (80)
11 2dlo_A Thyroid receptor-intera 99.7 6.8E-19 2.3E-23 127.6 5.2 64 200-264 17-80 (81)
12 2cuq_A Four and A half LIM dom 99.7 1.1E-18 3.7E-23 126.1 5.2 79 142-264 1-79 (80)
13 1j2o_A FLIN2, fusion of rhombo 99.7 1.9E-18 6.5E-23 133.4 6.3 105 95-262 3-110 (114)
14 1x6a_A LIMK-2, LIM domain kina 99.7 2.9E-18 9.8E-23 124.2 4.8 80 142-264 1-81 (81)
15 1x63_A Skeletal muscle LIM-pro 99.7 2.8E-18 9.6E-23 124.5 4.6 79 142-263 1-80 (82)
16 1a7i_A QCRP2 (LIM1); LIM domai 99.7 2.1E-17 7.2E-22 119.7 2.6 73 197-270 6-78 (81)
17 2egq_A FHL1 protein; LIM domai 99.7 5.4E-17 1.8E-21 116.3 4.4 73 142-257 1-77 (77)
18 1iml_A CRIP, cysteine rich int 99.6 1.8E-16 6.2E-21 113.3 4.7 70 200-270 2-72 (76)
19 2cu8_A Cysteine-rich protein 2 99.6 4.9E-16 1.7E-20 111.0 4.9 68 196-264 7-75 (76)
20 2dj7_A Actin-binding LIM prote 99.6 5.6E-16 1.9E-20 112.0 5.1 67 196-264 13-79 (80)
21 1v6g_A Actin binding LIM prote 99.6 7.4E-16 2.5E-20 111.4 5.1 77 143-262 2-78 (81)
22 1iml_A CRIP, cysteine rich int 99.6 8.6E-16 2.9E-20 109.7 4.9 61 96-157 1-62 (76)
23 1x68_A FHL5 protein; four-and- 99.6 1.2E-15 4.2E-20 109.0 5.2 67 199-266 6-75 (76)
24 2d8y_A Eplin protein; LIM doma 99.6 3.5E-15 1.2E-19 110.3 7.5 74 196-271 13-86 (91)
25 1a7i_A QCRP2 (LIM1); LIM domai 99.6 7.3E-16 2.5E-20 111.5 3.3 73 94-167 6-78 (81)
26 2cur_A Skeletal muscle LIM-pro 99.6 1.5E-15 5.1E-20 106.4 4.4 66 197-264 4-69 (69)
27 2cu8_A Cysteine-rich protein 2 99.6 3.2E-15 1.1E-19 106.7 5.3 67 93-160 7-74 (76)
28 2dar_A PDZ and LIM domain prot 99.6 4.2E-15 1.4E-19 109.7 5.9 67 196-264 23-89 (90)
29 1x63_A Skeletal muscle LIM-pro 99.5 3.3E-15 1.1E-19 108.2 5.0 76 83-159 3-79 (82)
30 2d8z_A Four and A half LIM dom 99.5 3.1E-15 1.1E-19 105.0 4.7 66 197-264 4-69 (70)
31 1j2o_A FLIN2, fusion of rhombo 99.5 4.1E-15 1.4E-19 114.6 5.6 70 198-268 3-74 (114)
32 2dj7_A Actin-binding LIM prote 99.5 4E-15 1.4E-19 107.4 5.1 65 94-160 14-78 (80)
33 1x3h_A Leupaxin; paxillin fami 99.5 4.6E-15 1.6E-19 106.9 5.3 73 84-158 4-76 (80)
34 2cup_A Skeletal muscle LIM-pro 99.5 4.4E-15 1.5E-19 111.7 5.4 73 197-270 4-77 (101)
35 2ehe_A Four and A half LIM dom 99.5 4.3E-15 1.5E-19 107.6 5.0 75 83-158 3-78 (82)
36 1wyh_A SLIM 2, skeletal muscle 99.5 3.1E-15 1.1E-19 105.6 3.9 66 198-264 5-71 (72)
37 2co8_A NEDD9 interacting prote 99.5 8.5E-15 2.9E-19 106.2 6.2 68 196-263 13-81 (82)
38 1x4k_A Skeletal muscle LIM-pro 99.5 3.7E-15 1.3E-19 105.2 3.9 65 199-264 6-71 (72)
39 2dlo_A Thyroid receptor-intera 99.5 7.8E-15 2.7E-19 106.0 5.6 74 83-158 4-77 (81)
40 1x68_A FHL5 protein; four-and- 99.5 6E-15 2.1E-19 105.3 4.9 64 93-157 3-69 (76)
41 1m3v_A FLIN4, fusion of the LI 99.5 3.4E-15 1.2E-19 116.5 3.4 72 198-270 5-80 (122)
42 1x6a_A LIMK-2, LIM domain kina 99.5 8.3E-15 2.8E-19 105.8 5.2 74 84-158 4-78 (81)
43 2xqn_T Testin, TESS; metal-bin 99.5 4.7E-15 1.6E-19 116.1 3.9 71 199-270 4-74 (126)
44 1nyp_A Pinch protein; LIM doma 99.5 4.8E-15 1.6E-19 102.8 3.5 62 94-157 4-65 (66)
45 1x64_A Alpha-actinin-2 associa 99.5 1.3E-14 4.4E-19 106.8 5.9 66 93-160 23-88 (89)
46 2co8_A NEDD9 interacting prote 99.5 1.3E-14 4.5E-19 105.2 5.6 64 94-157 14-78 (82)
47 2d8y_A Eplin protein; LIM doma 99.5 1.6E-14 5.4E-19 106.8 6.1 69 90-159 10-78 (91)
48 1g47_A Pinch protein; LIM doma 99.5 4.2E-15 1.4E-19 106.3 2.8 66 197-263 10-76 (77)
49 2cur_A Skeletal muscle LIM-pro 99.5 9.4E-15 3.2E-19 102.3 4.5 65 94-160 4-68 (69)
50 2cuq_A Four and A half LIM dom 99.5 1.5E-14 5.2E-19 104.1 5.7 73 84-158 4-76 (80)
51 2jtn_A LIM domain-binding prot 99.5 1.3E-14 4.4E-19 120.9 6.1 70 199-270 61-130 (182)
52 1x64_A Alpha-actinin-2 associa 99.5 1.7E-14 5.9E-19 106.1 6.0 67 196-264 23-89 (89)
53 1x4l_A Skeletal muscle LIM-pro 99.5 1.4E-14 4.9E-19 102.2 5.2 65 197-262 4-71 (72)
54 1nyp_A Pinch protein; LIM doma 99.5 5.4E-15 1.9E-19 102.6 2.6 62 198-261 5-66 (66)
55 2dar_A PDZ and LIM domain prot 99.5 3.2E-14 1.1E-18 104.9 6.6 66 91-158 21-86 (90)
56 1x62_A C-terminal LIM domain p 99.5 7.2E-15 2.4E-19 105.8 3.0 65 94-160 14-78 (79)
57 1x4l_A Skeletal muscle LIM-pro 99.5 2.1E-14 7.2E-19 101.3 5.1 64 94-158 4-70 (72)
58 1wyh_A SLIM 2, skeletal muscle 99.5 1.9E-14 6.4E-19 101.5 4.5 65 93-158 3-68 (72)
59 2d8z_A Four and A half LIM dom 99.5 3.2E-14 1.1E-18 99.8 5.6 64 94-159 4-67 (70)
60 2d8x_A Protein pinch; LIM doma 99.5 2E-14 6.9E-19 100.8 4.1 65 197-263 4-68 (70)
61 1x62_A C-terminal LIM domain p 99.5 9.6E-15 3.3E-19 105.1 2.3 66 197-264 14-79 (79)
62 1x4k_A Skeletal muscle LIM-pro 99.5 2.4E-14 8.4E-19 100.9 4.2 65 93-158 3-68 (72)
63 2cor_A Pinch protein; LIM doma 99.5 2.9E-14 9.9E-19 102.6 4.0 64 197-263 14-77 (79)
64 2egq_A FHL1 protein; LIM domai 99.5 3.7E-14 1.3E-18 101.4 4.4 70 83-153 3-76 (77)
65 1g47_A Pinch protein; LIM doma 99.5 2.9E-14 9.7E-19 101.9 3.5 65 93-158 9-74 (77)
66 2xjy_A Rhombotin-2; oncoprotei 99.4 3.1E-14 1.1E-18 112.1 3.1 72 199-270 3-77 (131)
67 2rgt_A Fusion of LIM/homeobox 99.4 4.6E-14 1.6E-18 116.1 4.1 71 198-270 6-76 (169)
68 2d8x_A Protein pinch; LIM doma 99.4 5.1E-14 1.8E-18 98.8 3.7 63 94-158 4-66 (70)
69 1x61_A Thyroid receptor intera 99.4 7.7E-14 2.6E-18 98.3 4.2 67 197-265 4-71 (72)
70 2cor_A Pinch protein; LIM doma 99.4 8.9E-14 3E-18 100.0 4.4 63 93-158 13-75 (79)
71 2l4z_A DNA endonuclease RBBP8, 99.4 1E-13 3.4E-18 108.2 4.5 63 93-156 59-123 (123)
72 1x61_A Thyroid receptor intera 99.4 1.2E-13 4.1E-18 97.4 4.4 63 94-157 4-67 (72)
73 1wig_A KIAA1808 protein; LIM d 99.4 1.2E-13 4E-18 97.9 4.4 62 94-157 4-66 (73)
74 3f6q_B LIM and senescent cell 99.4 7.2E-14 2.5E-18 98.2 3.1 65 91-156 7-72 (72)
75 1wig_A KIAA1808 protein; LIM d 99.4 1.5E-13 5E-18 97.3 4.5 66 198-264 5-70 (73)
76 2l3k_A Rhombotin-2, linker, LI 99.4 1.2E-13 4.1E-18 107.8 4.4 69 200-268 10-79 (123)
77 1b8t_A Protein (CRP1); LIM dom 99.4 1.1E-13 3.7E-18 116.2 3.9 72 197-269 6-77 (192)
78 3f6q_B LIM and senescent cell 99.4 1.1E-13 3.8E-18 97.3 3.2 62 197-259 10-72 (72)
79 2l4z_A DNA endonuclease RBBP8, 99.4 1.7E-13 5.9E-18 106.9 4.3 62 197-259 60-123 (123)
80 1v6g_A Actin binding LIM prote 99.4 3.3E-13 1.1E-17 97.4 3.8 74 83-157 3-76 (81)
81 1rut_X Flinc4, fusion protein 99.3 1.5E-13 5.1E-18 115.0 1.3 71 199-270 6-80 (188)
82 2l3k_A Rhombotin-2, linker, LI 99.3 6.1E-13 2.1E-17 103.7 4.7 66 93-159 4-73 (123)
83 2iyb_E Testin, TESS, TES; LIM 99.3 6.8E-13 2.3E-17 91.7 2.5 59 95-154 2-64 (65)
84 2iyb_E Testin, TESS, TES; LIM 99.3 1.3E-12 4.3E-17 90.3 2.4 58 199-257 3-64 (65)
85 1zfo_A LAsp-1; LIM domain, zin 98.2 5.5E-07 1.9E-11 52.3 2.2 29 95-123 3-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 98.1 1.5E-06 5.1E-11 50.5 2.1 27 200-226 5-31 (31)
87 2ysm_A Myeloid/lymphoid or mix 88.5 2.2 7.7E-05 31.4 7.9 48 200-257 56-105 (111)
88 4gne_A Histone-lysine N-methyl 77.5 6.8 0.00023 28.8 6.4 41 95-150 15-59 (107)
89 2eqg_A Tumor necrosis factor, 73.6 1 3.5E-05 27.4 0.8 19 240-258 21-39 (49)
90 2ecy_A TNF receptor-associated 69.0 3.8 0.00013 26.7 3.0 31 123-155 16-46 (66)
91 2kwj_A Zinc finger protein DPF 67.7 2.2 7.5E-05 31.7 1.7 47 200-256 60-108 (114)
92 2ct0_A Non-SMC element 1 homol 67.2 3.2 0.00011 28.4 2.3 30 94-123 14-43 (74)
93 1t1h_A Gspef-atpub14, armadill 64.3 3.2 0.00011 28.0 1.9 34 121-156 7-40 (78)
94 1jjd_A Metallothionein, SMTA; 63.6 5.7 0.0002 25.5 2.8 38 227-267 9-48 (55)
95 3nw0_A Non-structural maintena 59.6 3.5 0.00012 34.9 1.6 40 94-133 179-228 (238)
96 2ct0_A Non-SMC element 1 homol 58.8 9.1 0.00031 26.1 3.4 30 197-226 14-43 (74)
97 1chc_A Equine herpes virus-1 r 56.7 8.1 0.00028 25.0 2.8 40 95-134 5-52 (68)
98 2cs3_A Protein C14ORF4, MY039 55.8 5.3 0.00018 27.8 1.7 49 94-148 14-62 (93)
99 2djb_A Polycomb group ring fin 54.6 7.2 0.00025 25.8 2.3 32 123-155 16-47 (72)
100 1weo_A Cellulose synthase, cat 54.5 11 0.00038 26.7 3.2 33 194-234 12-44 (93)
101 2ysl_A Tripartite motif-contai 53.4 7.6 0.00026 25.5 2.3 12 200-211 59-70 (73)
102 2ecm_A Ring finger and CHY zin 53.1 14 0.00047 22.6 3.4 39 95-133 5-54 (55)
103 2ecv_A Tripartite motif-contai 51.8 13 0.00046 24.9 3.4 12 200-211 61-72 (85)
104 1jm7_B BARD1, BRCA1-associated 51.2 15 0.00052 26.8 3.9 32 123-155 23-54 (117)
105 3vk6_A E3 ubiquitin-protein li 48.6 8 0.00027 28.1 1.8 30 200-235 39-71 (101)
106 1e4u_A Transcriptional repress 47.0 15 0.0005 25.1 2.9 33 123-155 12-46 (78)
107 2egp_A Tripartite motif-contai 45.0 17 0.00057 24.1 3.0 31 123-155 13-43 (79)
108 1jm7_A BRCA1, breast cancer ty 44.5 17 0.00058 26.0 3.2 31 123-155 22-52 (112)
109 1iym_A EL5; ring-H2 finger, ub 44.4 25 0.00087 21.3 3.6 9 200-208 45-53 (55)
110 2d8t_A Dactylidin, ring finger 44.3 7.4 0.00025 25.6 1.0 12 200-211 51-62 (71)
111 1bor_A Transcription factor PM 44.2 21 0.00071 22.2 3.2 10 200-209 39-48 (56)
112 2yur_A Retinoblastoma-binding 44.1 11 0.00039 25.0 2.0 31 123-155 16-47 (74)
113 2y43_A E3 ubiquitin-protein li 44.0 10 0.00036 26.7 1.8 32 123-155 23-54 (99)
114 3l11_A E3 ubiquitin-protein li 43.6 13 0.00044 27.0 2.4 31 123-155 16-46 (115)
115 4ayc_A E3 ubiquitin-protein li 43.4 10 0.00035 28.7 1.9 31 123-155 54-84 (138)
116 1g25_A CDK-activating kinase a 42.1 11 0.00037 24.2 1.6 33 123-155 4-39 (65)
117 2dmj_A Poly (ADP-ribose) polym 41.6 11 0.00038 27.5 1.7 36 89-124 19-65 (106)
118 4ap4_A E3 ubiquitin ligase RNF 41.4 8.4 0.00029 28.4 1.0 9 200-208 9-17 (133)
119 2ect_A Ring finger protein 126 41.1 59 0.002 21.3 5.4 29 199-227 16-46 (78)
120 3ng2_A RNF4, snurf, ring finge 40.7 12 0.00042 24.2 1.7 41 94-134 9-63 (71)
121 1wen_A Inhibitor of growth fam 40.7 59 0.002 21.6 5.2 46 95-154 16-66 (71)
122 1x4j_A Ring finger protein 38; 40.4 13 0.00046 24.6 1.9 39 95-133 23-71 (75)
123 1weu_A Inhibitor of growth fam 40.3 94 0.0032 21.8 6.4 47 94-154 35-86 (91)
124 2ea6_A Ring finger protein 4; 40.3 16 0.00056 23.4 2.3 40 94-133 14-67 (69)
125 2ecw_A Tripartite motif-contai 40.2 13 0.00043 25.0 1.8 12 200-211 61-72 (85)
126 2ckl_B Ubiquitin ligase protei 38.7 12 0.00041 29.2 1.6 33 122-155 54-86 (165)
127 2d8s_A Cellular modulator of i 38.1 39 0.0013 23.0 4.0 40 94-133 14-69 (80)
128 2xeu_A Ring finger protein 4; 36.9 16 0.00056 22.9 1.8 40 96-135 4-57 (64)
129 1v9x_A Poly (ADP-ribose) polym 36.5 13 0.00045 27.5 1.4 21 89-109 14-34 (114)
130 2ecg_A Baculoviral IAP repeat- 36.4 21 0.00071 23.7 2.3 11 200-210 58-68 (75)
131 2kre_A Ubiquitin conjugation f 36.2 19 0.00064 25.8 2.2 34 120-155 27-60 (100)
132 3lrq_A E3 ubiquitin-protein li 36.1 10 0.00034 27.0 0.7 32 123-155 23-54 (100)
133 2e6s_A E3 ubiquitin-protein li 35.2 38 0.0013 23.0 3.5 28 200-227 28-57 (77)
134 2gvi_A Conserved hypothetical 35.0 6.8 0.00023 32.2 -0.5 30 123-153 173-202 (204)
135 2ep4_A Ring finger protein 24; 34.8 30 0.001 22.6 2.9 40 95-134 15-64 (74)
136 1wgm_A Ubiquitin conjugation f 33.9 22 0.00075 25.3 2.2 34 120-155 20-54 (98)
137 2ckl_A Polycomb group ring fin 33.2 16 0.00055 26.1 1.4 33 122-155 15-47 (108)
138 2kr4_A Ubiquitin conjugation f 31.7 12 0.00041 25.8 0.5 34 120-155 12-45 (85)
139 3fl2_A E3 ubiquitin-protein li 31.7 14 0.00047 27.3 0.8 31 123-155 53-83 (124)
140 3nw0_A Non-structural maintena 31.4 25 0.00087 29.4 2.5 29 198-226 180-208 (238)
141 2ct2_A Tripartite motif protei 31.2 25 0.00087 23.7 2.1 11 200-210 58-68 (88)
142 2kiz_A E3 ubiquitin-protein li 29.4 52 0.0018 21.0 3.4 28 199-226 15-44 (69)
143 2ecl_A Ring-box protein 2; RNF 29.1 21 0.00072 24.2 1.4 20 114-133 48-75 (81)
144 3od8_A Poly [ADP-ribose] polym 29.0 16 0.00056 27.2 0.8 21 89-109 32-52 (116)
145 3hct_A TNF receptor-associated 28.7 12 0.0004 27.5 -0.1 31 123-155 19-49 (118)
146 2c2l_A CHIP, carboxy terminus 28.5 22 0.00074 29.8 1.6 34 120-155 206-239 (281)
147 1uw0_A DNA ligase III; DNA rep 27.6 17 0.00058 27.0 0.7 20 90-109 10-29 (117)
148 3ztg_A E3 ubiquitin-protein li 27.2 36 0.0012 23.2 2.4 32 122-155 13-45 (92)
149 3odc_A Poly [ADP-ribose] polym 27.0 19 0.00064 26.6 0.8 20 90-109 14-33 (111)
150 1rmd_A RAG1; V(D)J recombinati 26.5 17 0.00057 26.4 0.5 31 123-155 24-54 (116)
151 2ecn_A Ring finger protein 141 26.3 25 0.00084 22.7 1.3 37 95-133 15-59 (70)
152 1vd4_A Transcription initiatio 26.1 13 0.00045 23.4 -0.2 33 200-236 16-50 (62)
153 3hcs_A TNF receptor-associated 26.0 14 0.00047 28.9 -0.1 31 123-155 19-49 (170)
154 4ic3_A E3 ubiquitin-protein li 25.9 35 0.0012 22.5 2.0 10 200-209 57-66 (74)
155 4gzn_C ZFP-57, zinc finger pro 25.4 8.1 0.00028 24.8 -1.3 37 200-237 6-44 (60)
156 1z6u_A NP95-like ring finger p 25.4 20 0.0007 27.6 0.8 31 123-155 79-109 (150)
157 2vpb_A Hpygo1, pygopus homolog 23.9 26 0.00089 23.0 1.0 28 95-122 8-39 (65)
158 2vnf_A ING 4, P29ING4, inhibit 23.4 41 0.0014 21.6 1.9 44 96-153 11-59 (60)
159 2e5r_A Dystrobrevin alpha; ZZ 23.3 65 0.0022 20.9 2.9 11 247-257 35-45 (63)
160 3c6w_A P28ING5, inhibitor of g 23.3 35 0.0012 21.9 1.5 44 96-153 10-58 (59)
161 2ea5_A Cell growth regulator w 22.5 67 0.0023 20.9 2.9 11 200-210 48-58 (68)
162 2cs2_A Poly [ADP-ribose] polym 22.3 36 0.0012 25.9 1.7 21 89-109 21-41 (134)
163 2g6q_A Inhibitor of growth pro 21.5 42 0.0014 21.7 1.6 44 96-153 12-60 (62)
164 2jrp_A Putative cytoplasmic pr 21.0 47 0.0016 23.0 1.8 39 96-154 3-41 (81)
165 2eps_A POZ-, at HOOK-, and zin 20.6 26 0.00089 21.1 0.4 37 200-236 14-52 (54)
166 2csy_A Zinc finger protein 183 20.3 58 0.002 21.6 2.3 38 95-133 15-60 (81)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.96 E-value=1.7e-30 Score=219.33 Aligned_cols=175 Identities=47% Similarity=0.975 Sum_probs=134.0
Q ss_pred CCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCCCCCcccCCcccccCCC
Q psy16551 95 GKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPHGYGFAAGSGFLQTDGL 174 (281)
Q Consensus 95 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~~~~~~c~~~~~~~~~~ 174 (281)
.+.|.+|+++|+.++.+.++++.||++||+|..|+++|....++ .++|++||+.||.++|++++++.+-..+.+..|..
T Consensus 7 ~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~ 85 (192)
T 1b8t_A 7 GKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVA-VHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKG 85 (192)
T ss_dssp CEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEE-EETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCC
T ss_pred CCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeE-ecCCEeeChhhhHhhcCccccccccccccEecCCC
Confidence 46799999999888899999999999999999999999987766 49999999999999999987654322333322221
Q ss_pred c-----cccccCCCCCcCCCCc--cccCCCCCCCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCc
Q psy16551 175 T-----EDEISANRPFYNPNTT--SIMARKGEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKE 247 (281)
Q Consensus 175 ~-----~~~~~~~~~~~~~~~~--~~~~~~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~ 247 (281)
. ........| .....+ .-..++..+|++|+++|..++.+.++++.||++||+|..|+++|....++ ..+|+
T Consensus 86 ~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~ 163 (192)
T 1b8t_A 86 ESLGIKYEEGQSHRP-TNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLA-DKDGE 163 (192)
T ss_dssp CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEE-EETTE
T ss_pred cccccccccccccCC-CCcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCccc-ccCCE
Confidence 0 000111111 000000 01113455799999999888888899999999999999999999776664 79999
Q ss_pred ccChhhhccccCCCCCcCCCCCccc
Q psy16551 248 IYCKACYGKNFGPKGFGYGHSPTLV 272 (281)
Q Consensus 248 ~~C~~c~~~~f~~~c~~c~~~~~~~ 272 (281)
+||+.||.++|+++|.+|+.+++..
T Consensus 164 ~yC~~cy~~~f~~kc~~C~~~~g~~ 188 (192)
T 1b8t_A 164 IYCKGCYAKNFGPKGFGFGQGAGAL 188 (192)
T ss_dssp EEEHHHHHHHTCCCCCCCCCCCCCC
T ss_pred EeCHHHHHHhcCCcCCCCCCcccce
Confidence 9999999999999999999986433
No 2
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.94 E-value=2.8e-28 Score=193.31 Aligned_cols=127 Identities=20% Similarity=0.358 Sum_probs=108.3
Q ss_pred CCCCcCCCccccccceeeccCcccccCceeccccCCCCCC--CCeeeCCCCcccCccchhhccCCCCCCcccCCcccccC
Q psy16551 95 GKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDS--INACDGPDKDIYCKTCYGKKWGPHGYGFAAGSGFLQTD 172 (281)
Q Consensus 95 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~--~~~~~~~~g~~~C~~cy~~~~~~~~~~~~c~~~~~~~~ 172 (281)
.++|++|+++|.+.+.+.++++.||++||+|..|+.+|.. ..++ .++|++||+.||.++|++++
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~-~~~g~~yC~~~y~~~~~~~~------------- 67 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLY-YKLGRKLCRRDYLRLFGQDG------------- 67 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEE-EETTEEECHHHHHHHHCCCE-------------
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEE-EECCEEeecCchhhhCCCcc-------------
Confidence 4679999999987767899999999999999999999973 4555 59999999999999997621
Q ss_pred CCccccccCCCCCcCCCCccccCCCCCCCCCCCCcccccc-eeeecCcccccccccccccCCCCCCCccccCCCCcccCh
Q psy16551 173 GLTEDEISANRPFYNPNTTSIMARKGEGCPRCGGAVFAAE-QQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCK 251 (281)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~-~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~ 251 (281)
+|++|+++|...+ .+.++++.||++||+|..|+++|..+..+...+|++||.
T Consensus 68 ---------------------------~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~ 120 (131)
T 2xjy_A 68 ---------------------------LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCE 120 (131)
T ss_dssp ---------------------------ECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEG
T ss_pred ---------------------------ChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcH
Confidence 7999999998755 456899999999999999999995433334689999999
Q ss_pred hhhccccCCCC
Q psy16551 252 ACYGKNFGPKG 262 (281)
Q Consensus 252 ~c~~~~f~~~c 262 (281)
.||.++|++++
T Consensus 121 ~c~~~~~~~~~ 131 (131)
T 2xjy_A 121 QDIYEWTKING 131 (131)
T ss_dssp GGHHHHHHHHC
T ss_pred HHHHHHhhccC
Confidence 99999988653
No 3
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.94 E-value=7.7e-28 Score=202.40 Aligned_cols=134 Identities=25% Similarity=0.555 Sum_probs=108.1
Q ss_pred CCCCCcCCCccccccceeeccCcccccCceeccccCCCCCC--CCeeeCCCCcccCccchhhccCCCCCCcccCCccccc
Q psy16551 94 PGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDS--INACDGPDKDIYCKTCYGKKWGPHGYGFAAGSGFLQT 171 (281)
Q Consensus 94 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~--~~~~~~~~g~~~C~~cy~~~~~~~~~~~~c~~~~~~~ 171 (281)
..+.|++|+++|.+.+++.++++.||++||+|..|+++|.. ..++ .++|++||+.||.++|+++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~-~~~g~~yC~~cy~~~~~~~------------- 69 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRLFGNS------------- 69 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEE-EETTEEECHHHHHHHHSCC-------------
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEE-EeCCccccccccccccccC-------------
Confidence 35789999999987767899999999999999999999985 4444 5999999999999999862
Q ss_pred CCCccccccCCCCCcCCCCccccCCCCCCCCCCCCcccccce-eeecCcccccccccccccCCCCCCCccccCCCCcccC
Q psy16551 172 DGLTEDEISANRPFYNPNTTSIMARKGEGCPRCGGAVFAAEQ-QLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYC 250 (281)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~-v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C 250 (281)
.+|++|+++|...+. +.+.++.||++||+|..|++.|..+..+...++++||
T Consensus 70 ---------------------------~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC 122 (188)
T 1rut_X 70 ---------------------------GACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 122 (188)
T ss_dssp ---------------------------EECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEE
T ss_pred ---------------------------CccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEEC
Confidence 169999999987664 4599999999999999999999644333468999999
Q ss_pred hhhhccccCCCCCcCCCC
Q psy16551 251 KACYGKNFGPKGFGYGHS 268 (281)
Q Consensus 251 ~~c~~~~f~~~c~~c~~~ 268 (281)
..||.++|+++|.+.+.+
T Consensus 123 ~~c~~~~~~~~~~~~g~~ 140 (188)
T 1rut_X 123 EHDRPTALINGHLNSGGS 140 (188)
T ss_dssp GGGCCTTTC---------
T ss_pred HHHHHHHhcccccccCCC
Confidence 999999999999887664
No 4
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.93 E-value=3.3e-27 Score=185.94 Aligned_cols=121 Identities=25% Similarity=0.536 Sum_probs=108.3
Q ss_pred CCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCCCCCcccCCcccccCCC
Q psy16551 95 GKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPHGYGFAAGSGFLQTDGL 174 (281)
Q Consensus 95 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~~~~~~c~~~~~~~~~~ 174 (281)
.+.|++|+++|++++.+.++|+.||++||+|..|+++|.+..++ .++|++||+.||.++|++
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~cy~~~~~~----------------- 64 (126)
T 2xqn_T 3 KPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYV-MVNDKPVCKPCYVKNHAV----------------- 64 (126)
T ss_dssp CCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEE-EETTEEEEHHHHHHHSCC-----------------
T ss_pred CCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEE-eECCEEechHHhCcCcCc-----------------
Confidence 47899999999888889999999999999999999999977665 499999999999999988
Q ss_pred ccccccCCCCCcCCCCccccCCCCCCCCCCCCcccccc-eeeecCcccc--cccccccccCCCCCCCccccCCCCcccCh
Q psy16551 175 TEDEISANRPFYNPNTTSIMARKGEGCPRCGGAVFAAE-QQLAKGTMWH--KQCFSCNVCKRPLDSVLACDGPDKEIYCK 251 (281)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~-~v~~~g~~~H--~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~ 251 (281)
+|++|+++|...+ .+.++++.|| ++||+|..|+++|.+..|+ ..+|++||.
T Consensus 65 -------------------------~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~-~~~~~~yC~ 118 (126)
T 2xqn_T 65 -------------------------VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFM-PVEGMVFCS 118 (126)
T ss_dssp -------------------------BCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEE-EETTEEESS
T ss_pred -------------------------cCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeE-eECCEEcch
Confidence 8999999998644 5669999999 9999999999999866654 689999999
Q ss_pred hhhccccC
Q psy16551 252 ACYGKNFG 259 (281)
Q Consensus 252 ~c~~~~f~ 259 (281)
.+|.++|.
T Consensus 119 ~~~~~~f~ 126 (126)
T 2xqn_T 119 VECKKRMS 126 (126)
T ss_dssp HHHHHSCC
T ss_pred HHhhhhcC
Confidence 88888763
No 5
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.93 E-value=2.1e-26 Score=190.42 Aligned_cols=124 Identities=27% Similarity=0.541 Sum_probs=108.7
Q ss_pred CCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCCCCCcccCCcccccCCC
Q psy16551 95 GKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPHGYGFAAGSGFLQTDGL 174 (281)
Q Consensus 95 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~~~~~~c~~~~~~~~~~ 174 (281)
.+.|++|+++|++.+++.++|+.||++||+|..|+++|.+..| .++|++||+.||.++|++
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f--~~~g~~yC~~~y~~~f~~----------------- 66 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF--SRGESVYCKDDFFKRFGT----------------- 66 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE--ESSSCEECHHHHHHHHSC-----------------
T ss_pred CCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc--ccCCeeeecccccccccc-----------------
Confidence 4789999999988777889999999999999999999998764 499999999999999988
Q ss_pred ccccccCCCCCcCCCCccccCCCCCCCCCCCCccccccee-eecCcccccccccccccCCCCCC-CccccCCCCcccChh
Q psy16551 175 TEDEISANRPFYNPNTTSIMARKGEGCPRCGGAVFAAEQQ-LAKGTMWHKQCFSCNVCKRPLDS-VLACDGPDKEIYCKA 252 (281)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v-~~~g~~~H~~Cf~C~~C~~~L~~-~~~~~~~~g~~~C~~ 252 (281)
+|++|+++|...+.+ .+.++.||++||+|..|++.|.. ..++...+|++||..
T Consensus 67 -------------------------~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~ 121 (169)
T 2rgt_A 67 -------------------------KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKA 121 (169)
T ss_dssp -------------------------BCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHH
T ss_pred -------------------------cccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHH
Confidence 899999999877755 58999999999999999999974 445456799999999
Q ss_pred hhccccCCCC
Q psy16551 253 CYGKNFGPKG 262 (281)
Q Consensus 253 c~~~~f~~~c 262 (281)
||.+++...+
T Consensus 122 c~~~~~~~~~ 131 (169)
T 2rgt_A 122 DYETAKQGGS 131 (169)
T ss_dssp HHHHHHHCC-
T ss_pred HHHHHhhccC
Confidence 9999887644
No 6
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.92 E-value=6.4e-26 Score=189.71 Aligned_cols=121 Identities=28% Similarity=0.572 Sum_probs=106.4
Q ss_pred CCCCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCCCCCcccCCcccccC
Q psy16551 93 APGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPHGYGFAAGSGFLQTD 172 (281)
Q Consensus 93 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~~~~~~c~~~~~~~~ 172 (281)
...+.|++|+++|++.+++.++++.||++||+|..|+++|....| .++|++||+.||.++|++
T Consensus 58 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f--~~~g~~yC~~~y~~~f~~--------------- 120 (182)
T 2jtn_A 58 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF--SRGESVYCKDDFFKRFGT--------------- 120 (182)
T ss_dssp CSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE--EETTEEECHHHHHHTTSC---------------
T ss_pred CCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce--eECCEeeecCcccccccc---------------
Confidence 346899999999988777889999999999999999999998764 489999999999999988
Q ss_pred CCccccccCCCCCcCCCCccccCCCCCCCCCCCCccccccee-eecCcccccccccccccCCCCCC-CccccCCCCcccC
Q psy16551 173 GLTEDEISANRPFYNPNTTSIMARKGEGCPRCGGAVFAAEQQ-LAKGTMWHKQCFSCNVCKRPLDS-VLACDGPDKEIYC 250 (281)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v-~~~g~~~H~~Cf~C~~C~~~L~~-~~~~~~~~g~~~C 250 (281)
+|..|+++|...+.+ .+.++.||++||+|..|+++|.. ..++...+|++||
T Consensus 121 ---------------------------kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC 173 (182)
T 2jtn_A 121 ---------------------------KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVC 173 (182)
T ss_dssp ---------------------------CCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEEC
T ss_pred ---------------------------ccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEEC
Confidence 899999999876654 58999999999999999999974 4454567999999
Q ss_pred hhhhccc
Q psy16551 251 KACYGKN 257 (281)
Q Consensus 251 ~~c~~~~ 257 (281)
..||.++
T Consensus 174 ~~cy~~~ 180 (182)
T 2jtn_A 174 KADYETA 180 (182)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999764
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.88 E-value=3.7e-23 Score=156.45 Aligned_cols=96 Identities=32% Similarity=0.692 Sum_probs=86.4
Q ss_pred CCCCCcCCCccccc-cceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCCCCCcccCCcccccC
Q psy16551 94 PGKGCPRCGGVVFA-AEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPHGYGFAAGSGFLQTD 172 (281)
Q Consensus 94 ~~~~C~~C~~~I~~-~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~~~~~~c~~~~~~~~ 172 (281)
..+.|.+|+++|+. ++++.++++.||++||+|..|+++|.+..++ .++|++||+.||.++|++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~cy~~~~~~--------------- 67 (101)
T 2cup_A 4 GSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFV-AKDNKILCNKCTTREDSP--------------- 67 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCE-EETTEEECHHHHTTCCCC---------------
T ss_pred CCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeE-CcCCEEEChhHhhhhcCC---------------
Confidence 45789999999974 7889999999999999999999999876666 499999999999999988
Q ss_pred CCccccccCCCCCcCCCCccccCCCCCCCCCCCCcccccc-eeeecCcccccccccccccC
Q psy16551 173 GLTEDEISANRPFYNPNTTSIMARKGEGCPRCGGAVFAAE-QQLAKGTMWHKQCFSCNVCK 232 (281)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~-~v~~~g~~~H~~Cf~C~~C~ 232 (281)
+|++|+++|..++ .+.++++.||++||+|..|+
T Consensus 68 ---------------------------~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 68 ---------------------------KCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp ---------------------------BCSSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred ---------------------------ccccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 8999999998665 56699999999999999985
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.80 E-value=2.6e-20 Score=145.71 Aligned_cols=113 Identities=21% Similarity=0.380 Sum_probs=93.1
Q ss_pred CCCCCcCCCccccccceeeccCcccccCceeccccCCCCCC--CCeeeCCCCcccCccchhhccCCCCCCcccCCccccc
Q psy16551 94 PGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDS--INACDGPDKDIYCKTCYGKKWGPHGYGFAAGSGFLQT 171 (281)
Q Consensus 94 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~--~~~~~~~~g~~~C~~cy~~~~~~~~~~~~c~~~~~~~ 171 (281)
..+.|++|+++|++.+++.++++.||++||+|..|+++|.. ..++ .++|++||+.||.++|++++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~-~~~g~~yC~~cy~~~f~~~~------------ 70 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRLFGNSG------------ 70 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCE-EETTEEECHHHHHHHHCCCC------------
T ss_pred CCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEE-EECCeeecHHHHHHHcCCCC------------
Confidence 45789999999988777899999999999999999999973 3444 59999999999999998743
Q ss_pred CCCccccccCCCCCcCCCCccccCCCCCCCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCcccCh
Q psy16551 172 DGLTEDEISANRPFYNPNTTSIMARKGEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCK 251 (281)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~ 251 (281)
+|++|+++|...+ +++.++ ..|.+..| ...++++||.
T Consensus 71 ----------------------------~C~~C~~~I~~~~-~~~~g~-------------~~l~g~~f-~~~~~~~yC~ 107 (122)
T 1m3v_A 71 ----------------------------AGGSGGHMGSGGD-VMVVGE-------------PTLMGGEF-GDEDERLITR 107 (122)
T ss_dssp ----------------------------SSSCSSCCSCCEE-SSSSSS-------------SSCCSCTT-CCTTCCCCEE
T ss_pred ----------------------------ccccCCCCcCchh-eEEcCC-------------cCCCCCcc-EecCCEeEcc
Confidence 7999999997654 455553 34656555 4799999999
Q ss_pred hhhccccCCCC
Q psy16551 252 ACYGKNFGPKG 262 (281)
Q Consensus 252 ~c~~~~f~~~c 262 (281)
.||.+++...+
T Consensus 108 ~~~~~~~~~~g 118 (122)
T 1m3v_A 108 LENTQFDAANG 118 (122)
T ss_dssp CTTTTTTCCSC
T ss_pred CcchhchhhcC
Confidence 99999887665
No 9
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.6e-19 Score=129.36 Aligned_cols=80 Identities=21% Similarity=0.528 Sum_probs=71.2
Q ss_pred CCcccCccchhhccCCCCCCcccCCcccccCCCccccccCCCCCcCCCCccccCCCCCCCCCCCCcccc-cceeeecCcc
Q psy16551 142 DKDIYCKTCYGKKWGPHGYGFAAGSGFLQTDGLTEDEISANRPFYNPNTTSIMARKGEGCPRCGGAVFA-AEQQLAKGTM 220 (281)
Q Consensus 142 ~g~~~C~~cy~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~-~~~v~~~g~~ 220 (281)
+|++||+.||.++|++ +|++|+++|.. +..+.++++.
T Consensus 1 ~g~~yC~~~y~~~~~~------------------------------------------~C~~C~~~I~~~~~~~~a~~~~ 38 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFAN------------------------------------------TCAECQQLIGHDSRELFYEDRH 38 (82)
T ss_dssp CCCCCCCCCCCCCCSC------------------------------------------BCTTTCCBCCSSCCBCCCSSCC
T ss_pred CCceechhHhCcccCC------------------------------------------cCccCCCccccCcEEEEeCCcc
Confidence 5899999999999987 89999999984 4455689999
Q ss_pred cccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCc
Q psy16551 221 WHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFG 264 (281)
Q Consensus 221 ~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~ 264 (281)
||++||+|+.|+++|.+..++ ..++++||+.||.++|+++|++
T Consensus 39 ~H~~CF~C~~C~~~L~~~~f~-~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 39 FHEGCFRCCRCQRSLADEPFT-CQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp CBTTTSBCTTTCCBCSSCCEE-EETTEEEETTTSSCCGGGSSCC
T ss_pred ccccCCeecCCCCccCCCccE-eeCCEEECHHHHhhhcCCCCCC
Confidence 999999999999999876664 6899999999999999999963
No 10
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=5.9e-19 Score=127.54 Aligned_cols=79 Identities=20% Similarity=0.411 Sum_probs=71.5
Q ss_pred CCcccCccchhhccCCCCCCcccCCcccccCCCccccccCCCCCcCCCCccccCCCCCCCCCCCCcccccceeeecCccc
Q psy16551 142 DKDIYCKTCYGKKWGPHGYGFAAGSGFLQTDGLTEDEISANRPFYNPNTTSIMARKGEGCPRCGGAVFAAEQQLAKGTMW 221 (281)
Q Consensus 142 ~g~~~C~~cy~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~g~~~ 221 (281)
+|++||+.||.++|++ +|++|+++|.. +.+.++++.|
T Consensus 1 gg~~yC~~~y~~~~~~------------------------------------------~C~~C~~~I~~-~~v~a~~~~~ 37 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSP------------------------------------------KCGGCNRPVLE-NYLSAMDTVW 37 (80)
T ss_dssp CCCCCCCCCCCCCCSC------------------------------------------BCTTTCCBCCS-SCEEETTEEE
T ss_pred CCCccchhHHhhhcCC------------------------------------------ccccCCCeecc-eeEEECCCeE
Confidence 4789999999999987 89999999975 6778999999
Q ss_pred ccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCc
Q psy16551 222 HKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFG 264 (281)
Q Consensus 222 H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~ 264 (281)
|++||+|..|+++|....++ ..++++||+.||.++|+++|.+
T Consensus 38 H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 38 HPECFVCGDCFTSFSTGSFF-ELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CTTTCBCSSSCCBSCSSCCE-ESSSCEECHHHHHHHHSSSCCC
T ss_pred ecCcCChhhCCCCCCCCcEE-eECCEEECHHHHHHHcCCCCCC
Confidence 99999999999999876654 6899999999999999999974
No 11
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=6.8e-19 Score=127.59 Aligned_cols=64 Identities=25% Similarity=0.568 Sum_probs=56.7
Q ss_pred CCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCc
Q psy16551 200 GCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFG 264 (281)
Q Consensus 200 ~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~ 264 (281)
+|++|+++|. +..+.++++.||++||+|..|+++|.+..|+...+|++||+.||.++|+++|++
T Consensus 17 ~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 17 KCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp BCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred ccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 8999999997 557779999999999999999999987666543479999999999999999974
No 12
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=1.1e-18 Score=126.14 Aligned_cols=79 Identities=27% Similarity=0.682 Sum_probs=71.2
Q ss_pred CCcccCccchhhccCCCCCCcccCCcccccCCCccccccCCCCCcCCCCccccCCCCCCCCCCCCcccccceeeecCccc
Q psy16551 142 DKDIYCKTCYGKKWGPHGYGFAAGSGFLQTDGLTEDEISANRPFYNPNTTSIMARKGEGCPRCGGAVFAAEQQLAKGTMW 221 (281)
Q Consensus 142 ~g~~~C~~cy~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~g~~~ 221 (281)
+|++||+.||.+++++ +|++|+++|.. +.+.++++.|
T Consensus 1 gg~~yC~~cy~~~~~~------------------------------------------~C~~C~~~I~~-~~v~a~~~~~ 37 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAP------------------------------------------RCARCSKTLTQ-GGVTYRDQPW 37 (80)
T ss_dssp CCCCSCCCCCCCCSSC------------------------------------------CCTTTCCCCCS-CCEESSSSEE
T ss_pred CCcEEcHHHHccccCC------------------------------------------cCCCCCCEecC-cEEEECCchh
Confidence 5899999999999887 99999999965 5778999999
Q ss_pred ccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCc
Q psy16551 222 HKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFG 264 (281)
Q Consensus 222 H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~ 264 (281)
|++||+|..|+++|.+..++ ..++++||+.||.++|+++|.+
T Consensus 38 H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 38 HRECLVCTGCQTPLAGQQFT-SRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CTTTCBCSSSCCBCTTCCEE-ECSSSEEEHHHHHHHTTCSTTC
T ss_pred hhhhCCcccCCCcCCCCeeE-eECCEEECHHHHHHHcCCCCCC
Confidence 99999999999999766554 6999999999999999999963
No 13
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=1.9e-18 Score=133.42 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=82.4
Q ss_pred CCCCcCCCccccccceeeccCcccccCceeccccCCCCCC--CCeeeCCCCcccCccchhhccCCCCCCcccCCcccccC
Q psy16551 95 GKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDS--INACDGPDKDIYCKTCYGKKWGPHGYGFAAGSGFLQTD 172 (281)
Q Consensus 95 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~--~~~~~~~~g~~~C~~cy~~~~~~~~~~~~c~~~~~~~~ 172 (281)
.++|++|+++|++.+.+.++++.||++||+|..|+++|.. ..++ .++|++||+.||.++|++
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~-~~~g~~yC~~~y~~~f~~--------------- 66 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLY-YKLGRKLCRRDYLRLGGS--------------- 66 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCC-CBTTBCCCHHHHHHHHTS---------------
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeE-EECCeeechHHHHHHhCc---------------
Confidence 4679999999997778999999999999999999999985 3444 699999999999999998
Q ss_pred CCccccccCCCCCcCCCCccccCCCCCCCCCCCCcccccceeeecCcccccccccccccCCCC-CCCccccCCCCcccCh
Q psy16551 173 GLTEDEISANRPFYNPNTTSIMARKGEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPL-DSVLACDGPDKEIYCK 251 (281)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L-~~~~~~~~~~g~~~C~ 251 (281)
+|..|.. ++.+ .|...+ .+..| ...++++||.
T Consensus 67 ---------------------------~c~~c~~----~~~~---------------~~~~~~~~g~~f-~~~~~~~~C~ 99 (114)
T 1j2o_A 67 ---------------------------GGHMGSG----GDVM---------------VVGEPTLMGGEF-GDEDERLITR 99 (114)
T ss_dssp ---------------------------CCSSCBS----CSCC---------------CSSCSSTTSSBC-CCSSSCCCEE
T ss_pred ---------------------------ccCcCCC----Ccee---------------EcCCccCCCCee-EEcCCEeecc
Confidence 5555531 1111 133454 44444 5799999999
Q ss_pred hhhccccCCCC
Q psy16551 252 ACYGKNFGPKG 262 (281)
Q Consensus 252 ~c~~~~f~~~c 262 (281)
.|+.++....+
T Consensus 100 ~~~~~~~~~~g 110 (114)
T 1j2o_A 100 LENTQFDAANG 110 (114)
T ss_dssp EECTTCCCTTS
T ss_pred hhhhccccccC
Confidence 99999877654
No 14
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=2.9e-18 Score=124.24 Aligned_cols=80 Identities=21% Similarity=0.370 Sum_probs=70.3
Q ss_pred CCcccCccchhhccCCCCCCcccCCcccccCCCccccccCCCCCcCCCCccccCCCCCCCCCCCCcccccceeeecCccc
Q psy16551 142 DKDIYCKTCYGKKWGPHGYGFAAGSGFLQTDGLTEDEISANRPFYNPNTTSIMARKGEGCPRCGGAVFAAEQQLAKGTMW 221 (281)
Q Consensus 142 ~g~~~C~~cy~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~g~~~ 221 (281)
++.+||+.||.++|++ +|++|+++|. ++.+.++++.|
T Consensus 1 g~~~yC~~~y~~~~~~------------------------------------------~C~~C~~~I~-~~~~~a~~~~~ 37 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGE------------------------------------------FCHGCSLLMT-GPFMVAGEFKY 37 (81)
T ss_dssp CCCCCCCCCSSCCSSC------------------------------------------BCTTTCCBCC-SCCBCCTTCCB
T ss_pred CCCccchhHHhhhcCC------------------------------------------cCccCCCCcC-ceEEEECCcee
Confidence 3679999999999987 8999999997 66778999999
Q ss_pred ccccccccccCCCCCCCcccc-CCCCcccChhhhccccCCCCCc
Q psy16551 222 HKQCFSCNVCKRPLDSVLACD-GPDKEIYCKACYGKNFGPKGFG 264 (281)
Q Consensus 222 H~~Cf~C~~C~~~L~~~~~~~-~~~g~~~C~~c~~~~f~~~c~~ 264 (281)
|++||+|..|+++|..+..+. +.++++||+.||.++|++++.|
T Consensus 38 H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~sg 81 (81)
T 1x6a_A 38 HPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSSG 81 (81)
T ss_dssp CTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSCC
T ss_pred ccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCCC
Confidence 999999999999996544444 5899999999999999999864
No 15
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=2.8e-18 Score=124.53 Aligned_cols=79 Identities=28% Similarity=0.598 Sum_probs=70.9
Q ss_pred CCcccCccchhhccCCCCCCcccCCcccccCCCccccccCCCCCcCCCCccccCCCCCCCCCCCCcccccce-eeecCcc
Q psy16551 142 DKDIYCKTCYGKKWGPHGYGFAAGSGFLQTDGLTEDEISANRPFYNPNTTSIMARKGEGCPRCGGAVFAAEQ-QLAKGTM 220 (281)
Q Consensus 142 ~g~~~C~~cy~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~-v~~~g~~ 220 (281)
++.+||++||.+++++ +|++|+++|..++. +.++++.
T Consensus 1 ~~~~yC~~cy~~~~~~------------------------------------------~C~~C~~~I~~~~~~~~a~~~~ 38 (82)
T 1x63_A 1 GSSGSSGKCTTREDSP------------------------------------------KCKGCFKAIVAGDQNVEYKGTV 38 (82)
T ss_dssp CCSCCCCCCCSCCCSC------------------------------------------BCSSSCCBCCSSSCEEECSSCE
T ss_pred CCCcCchhHHccccCC------------------------------------------cCccCCcccccCceEEEECccc
Confidence 4689999999999887 89999999987664 6699999
Q ss_pred cccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCC
Q psy16551 221 WHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGF 263 (281)
Q Consensus 221 ~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~ 263 (281)
||++||+|..|+++|....++ ..++++||+.||.++|+++|.
T Consensus 39 ~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 39 WHKDCFTCSNCKQVIGTGSFF-PKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp EETTTCCCSSSCCCCTTSCEE-EETTEEEEHHHHHHHTSCCCS
T ss_pred cccccCchhhCCCccCCCccE-eeCCEEECHHHHHHHhCCCCC
Confidence 999999999999999877664 689999999999999999985
No 16
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.66 E-value=2.1e-17 Score=119.66 Aligned_cols=73 Identities=45% Similarity=1.052 Sum_probs=55.5
Q ss_pred CCCCCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCcCCCCCc
Q psy16551 197 KGEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFGYGHSPT 270 (281)
Q Consensus 197 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~c~~~~~ 270 (281)
+..+|++|+++|..++.+.+.++.||++||+|..|+++|....++ ..++++||+.||.++|+++|.+|+.|.+
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~c~gcg~g~~ 78 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVA-IHDAEVYCKSCYGKKYGPKGYGYGQGAG 78 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCE-EETTEEECSHHHHHHCC-----------
T ss_pred CCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeE-eeCCEEECHHHHHHHhCCcccccCCccc
Confidence 445999999999888888899999999999999999999876654 6899999999999999999999998764
No 17
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=5.4e-17 Score=116.27 Aligned_cols=73 Identities=22% Similarity=0.513 Sum_probs=64.4
Q ss_pred CCcccCccchhhccCCCCCCcccCCcccccCCCccccccCCCCCcCCCCccccCCCCCCCCCCCCcccc----cceeeec
Q psy16551 142 DKDIYCKTCYGKKWGPHGYGFAAGSGFLQTDGLTEDEISANRPFYNPNTTSIMARKGEGCPRCGGAVFA----AEQQLAK 217 (281)
Q Consensus 142 ~g~~~C~~cy~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~----~~~v~~~ 217 (281)
++++||+.||.++|++ +|++|+++|.+ .+.+.++
T Consensus 1 g~~~yC~~cy~~~~~~------------------------------------------~C~~C~~~I~~~g~~~~~~~a~ 38 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAK------------------------------------------KCAGCKNPITGFGKGSSVVAYE 38 (77)
T ss_dssp CCSSCCTTCCCSCCCC------------------------------------------CCSSSCCCCCCCSSCCCEEEET
T ss_pred CCCeEchhHhchhhCc------------------------------------------cCcccCCcccCCCCCceeEEEC
Confidence 4789999999999987 99999999984 3677799
Q ss_pred CcccccccccccccCCCCCCCccccCCCCcccChhhhccc
Q psy16551 218 GTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKN 257 (281)
Q Consensus 218 g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~ 257 (281)
++.||++||+|..|+++|.+..++ ..++++||+.||.++
T Consensus 39 ~~~~H~~CF~C~~C~~~L~~~~f~-~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 39 GQSWHDYCFHCKKCSVNLANKRFV-FHQEQVYCPDCAKKL 77 (77)
T ss_dssp TEEEETTTCBCSSSCCBCTTSCCC-EETTEECCHHHHHHC
T ss_pred cceeCcccCEehhcCCCCCCCccE-eECCEEEChHHhccC
Confidence 999999999999999999876554 699999999999753
No 18
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=1.8e-16 Score=113.30 Aligned_cols=70 Identities=37% Similarity=0.900 Sum_probs=63.5
Q ss_pred CCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCcccCh-hhhccccCCCCCcCCCCCc
Q psy16551 200 GCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCK-ACYGKNFGPKGFGYGHSPT 270 (281)
Q Consensus 200 ~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~-~c~~~~f~~~c~~c~~~~~ 270 (281)
+|++|+++|..++.+.++++.||++||+|..|+++|.+..++ ..+|++||. .||.++|+++|.+|+.+..
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHA-EHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEE-EETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred cCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceE-CcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 799999999878888899999999999999999999877664 689999999 6999999999999987543
No 19
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=4.9e-16 Score=111.02 Aligned_cols=68 Identities=29% Similarity=0.697 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCcccCh-hhhccccCCCCCc
Q psy16551 196 RKGEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCK-ACYGKNFGPKGFG 264 (281)
Q Consensus 196 ~~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~-~c~~~~f~~~c~~ 264 (281)
+...+|++|+++|..++.+.++++.||++||+|..|+++|.+..++ ..++++||+ .||.++|+++|.+
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHA-EHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCE-EETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceE-eECCEEecchHHHHHhcccccCC
Confidence 4456999999999888888999999999999999999999876554 689999999 7999999999974
No 20
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=5.6e-16 Score=111.95 Aligned_cols=67 Identities=27% Similarity=0.545 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCc
Q psy16551 196 RKGEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFG 264 (281)
Q Consensus 196 ~~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~ 264 (281)
.+..+|++|+++|..++.+.++++.||++||+|..|+++|.+ .+ +.+|+++||+.||.++|+++|.+
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~-~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EY-ISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CC-EEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-Ce-EEECCEEECHHHHHHHcCCCCCC
Confidence 345599999999988888889999999999999999999985 44 46999999999999999999974
No 21
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=7.4e-16 Score=111.44 Aligned_cols=77 Identities=23% Similarity=0.383 Sum_probs=65.9
Q ss_pred CcccCccchhhccCCCCCCcccCCcccccCCCccccccCCCCCcCCCCccccCCCCCCCCCCCCcccccceeeecCcccc
Q psy16551 143 KDIYCKTCYGKKWGPHGYGFAAGSGFLQTDGLTEDEISANRPFYNPNTTSIMARKGEGCPRCGGAVFAAEQQLAKGTMWH 222 (281)
Q Consensus 143 g~~~C~~cy~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~g~~~H 222 (281)
..+||+.||.++|++ +|++|+++|. ++.+.++++.||
T Consensus 2 ~~~yC~~dy~~~~~~------------------------------------------~C~~C~~~I~-~~~v~a~~~~wH 38 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGT------------------------------------------RCFSCDQFIE-GEVVSALGKTYH 38 (81)
T ss_dssp CCCCCCSCGGGSCCC------------------------------------------BCTTTCCBCC-SCCEEETTEEEC
T ss_pred CCCcchHHHHhHhCC------------------------------------------cCccccCEec-cceEEECCceeC
Confidence 468999999999988 8999999997 567889999999
Q ss_pred cccccccccCCCCCCCccccCCCCcccChhhhccccCCCC
Q psy16551 223 KQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKG 262 (281)
Q Consensus 223 ~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c 262 (281)
++||+|..|+++|..+.++...++.+||..||.++++...
T Consensus 39 ~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~~~~ 78 (81)
T 1v6g_A 39 PDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVSGP 78 (81)
T ss_dssp TTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSSCCC
T ss_pred ccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCCCCC
Confidence 9999999999999766665444445799999999887764
No 22
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=8.6e-16 Score=109.74 Aligned_cols=61 Identities=41% Similarity=0.978 Sum_probs=56.3
Q ss_pred CCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCc-cchhhccCC
Q psy16551 96 KGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCK-TCYGKKWGP 157 (281)
Q Consensus 96 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~-~cy~~~~~~ 157 (281)
+.|++|+++|..++.+.++++.||++||+|..|+++|....++ .++|++||+ .||.++|++
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~cy~~~f~~ 62 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHA-EHEGKPYCNHPCYSAMFGP 62 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEE-EETTEEEETTTHHHHHSSC
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceE-CcCCeEeeCHHHHHHHhCc
Confidence 4799999999878999999999999999999999999987766 499999999 699999998
No 23
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.2e-15 Score=108.97 Aligned_cols=67 Identities=24% Similarity=0.479 Sum_probs=59.8
Q ss_pred CCCCCCCCcccc---cceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCcCC
Q psy16551 199 EGCPRCGGAVFA---AEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFGYG 266 (281)
Q Consensus 199 ~~C~~C~~~I~~---~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~c~ 266 (281)
.+|++|+++|.. .+.+.++++.||++||+|..|+++|.+..++ ..++++||..||.++|+++|+.++
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFL-TQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEE-EETTEEEETTTTCCCCCCSSSSSC
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceE-eECCEEECHHHhhhhhCCcCCCCC
Confidence 399999999974 3677799999999999999999999866564 689999999999999999999875
No 24
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=3.5e-15 Score=110.30 Aligned_cols=74 Identities=28% Similarity=0.573 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCcCCCCCcc
Q psy16551 196 RKGEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFGYGHSPTL 271 (281)
Q Consensus 196 ~~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~c~~~~~~ 271 (281)
.+..+|++|+++|...+.+.++++.||++||+|..|+++|....++ ..++++||+.||.++|+++|. +..+.+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~~f~~kc~-~~~g~g~ 86 (91)
T 2d8y_A 13 PARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYA-SLHGRIYCKPHFNQLFKSKGN-YDEGFGS 86 (91)
T ss_dssp SSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCC-CSSSCCCCHHHHHHHSCCCSC-CCSCCCC
T ss_pred CCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcE-eECCEEECHHHHHHHhCCCcC-ccCCcCC
Confidence 3456999999999888888899999999999999999999876654 689999999999999999997 4454443
No 25
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.57 E-value=7.3e-16 Score=111.46 Aligned_cols=73 Identities=48% Similarity=1.086 Sum_probs=56.2
Q ss_pred CCCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCCCCCcccCCc
Q psy16551 94 PGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPHGYGFAAGSG 167 (281)
Q Consensus 94 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~~~~~~c~~~ 167 (281)
..+.|.+|+++|+.++.+.++++.||++||+|..|+++|....++ .+++++||+.||.++|+++++|.+-+.+
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~c~gcg~g~~ 78 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVA-IHDAEVYCKSCYGKKYGPKGYGYGQGAG 78 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCE-EETTEEECSHHHHHHCC-----------
T ss_pred CCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeE-eeCCEEECHHHHHHHhCCcccccCCccc
Confidence 457899999999888899999999999999999999999887666 4899999999999999999775554443
No 26
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.5e-15 Score=106.39 Aligned_cols=66 Identities=24% Similarity=0.622 Sum_probs=58.6
Q ss_pred CCCCCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCc
Q psy16551 197 KGEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFG 264 (281)
Q Consensus 197 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~ 264 (281)
+..+|++|+++|. ++.+.++++.||++||+|..|+++|.+..++ ..++++||..||.++|+++|.|
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 4 GSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFT-AVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEE-ECSSCEEEHHHHHHHHTCSCCC
T ss_pred CcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccE-eECCEEECHHHhHHHhcCCCCC
Confidence 3459999999996 4678899999999999999999999866554 6899999999999999999975
No 27
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=3.2e-15 Score=106.75 Aligned_cols=67 Identities=33% Similarity=0.794 Sum_probs=60.3
Q ss_pred CCCCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCc-cchhhccCCCCC
Q psy16551 93 APGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCK-TCYGKKWGPHGY 160 (281)
Q Consensus 93 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~-~cy~~~~~~~~~ 160 (281)
...+.|++|+++|+.++.+.++++.||++||+|..|+++|....++ .+++++||+ .||.++|+|+++
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~cy~~~f~~kc~ 74 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHA-EHDGKPFCHKPCYATLFGSGPS 74 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCE-EETTEEECTTTHHHHHSCSSCS
T ss_pred CCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceE-eECCEEecchHHHHHhcccccC
Confidence 3467899999999888999999999999999999999999987666 499999999 799999999765
No 28
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=4.2e-15 Score=109.66 Aligned_cols=67 Identities=24% Similarity=0.577 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCc
Q psy16551 196 RKGEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFG 264 (281)
Q Consensus 196 ~~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~ 264 (281)
....+|++|+++|. ++.+.++++.||++||+|..|+++|.+..|+ +.++++||+.||.++|+++|.+
T Consensus 23 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 23 KRTPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFV-EEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp TCCCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBE-ESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeE-eECCEEECHHHHHHHcCCCCCC
Confidence 34569999999994 6778899999999999999999999876664 6999999999999999999963
No 29
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=3.3e-15 Score=108.19 Aligned_cols=76 Identities=24% Similarity=0.562 Sum_probs=67.9
Q ss_pred ccccccccCCCCCCCCcCCCccccccc-eeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCCC
Q psy16551 83 TVIDTAKIKAAPGKGCPRCGGVVFAAE-QVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPHG 159 (281)
Q Consensus 83 ~~~~~~~~~~~~~~~C~~C~~~I~~~~-~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~~ 159 (281)
.++|..++.....+.|.+|+++|..++ .+.++++.||++||+|..|+++|....++. +++++||+.||.++|++++
T Consensus 3 ~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~f~~~~ 79 (82)
T 1x63_A 3 SGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFP-KGEDFYCVTCHETKFASGP 79 (82)
T ss_dssp SCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEE-ETTEEEEHHHHHHHTSCCC
T ss_pred CcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEe-eCCEEECHHHHHHHhCCCC
Confidence 357889999998999999999998655 488999999999999999999999877664 9999999999999999864
No 30
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=3.1e-15 Score=104.98 Aligned_cols=66 Identities=23% Similarity=0.611 Sum_probs=58.1
Q ss_pred CCCCCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCc
Q psy16551 197 KGEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFG 264 (281)
Q Consensus 197 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~ 264 (281)
+..+|++|+++|. .+.+.++++.||++||+|..|+++|.+..++ ..++++||..||.++|+++|++
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 4 GSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFT-ARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCE-ESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceE-eeCCeEECHHHHHHHhccccCC
Confidence 3458999999996 4568899999999999999999999776664 6899999999999999999964
No 31
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=4.1e-15 Score=114.63 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=61.5
Q ss_pred CCCCCCCCCcccccceeeecCcccccccccccccCCCCCC--CccccCCCCcccChhhhccccCCCCCcCCCC
Q psy16551 198 GEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDS--VLACDGPDKEIYCKACYGKNFGPKGFGYGHS 268 (281)
Q Consensus 198 ~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~--~~~~~~~~g~~~C~~c~~~~f~~~c~~c~~~ 268 (281)
..+|++|+++|...+.+.++++.||++||+|+.|+++|.. ..+ +.++|++||+.||.++|+++|.+|..+
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~-~~~~g~~yC~~~y~~~f~~~c~~c~~~ 74 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRL-YYKLGRKLCRRDYLRLGGSGGHMGSGG 74 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCC-CCBTTBCCCHHHHHHHHTSCCSSCBSC
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCee-EEECCeeechHHHHHHhCcccCcCCCC
Confidence 3489999999987777889999999999999999999974 344 479999999999999999999988643
No 32
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=4e-15 Score=107.43 Aligned_cols=65 Identities=26% Similarity=0.608 Sum_probs=58.2
Q ss_pred CCCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCCCC
Q psy16551 94 PGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPHGY 160 (281)
Q Consensus 94 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~~~ 160 (281)
..+.|.+|+++|+.++++.++++.||++||+|..|+++|.+ .++ .++|++||+.||.++|++++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~-~~~g~~yC~~~y~~~fg~~C~ 78 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYI-SKDGVPYCESDYHAQFGSGPS 78 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCE-EETTEEECTTHHHHHTTCCST
T ss_pred CCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeE-EECCEEECHHHHHHHcCCCCC
Confidence 45789999999988899999999999999999999999986 444 599999999999999998653
No 33
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=4.6e-15 Score=106.89 Aligned_cols=73 Identities=22% Similarity=0.454 Sum_probs=66.3
Q ss_pred cccccccCCCCCCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCC
Q psy16551 84 VIDTAKIKAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPH 158 (281)
Q Consensus 84 ~~~~~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~ 158 (281)
+++..++.....+.|++|+++|.+ +.+.++++.||++||+|..|+++|....++ .+++++||+.||.++|+++
T Consensus 4 ~yC~~~y~~~~~~~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~~y~~~f~~~ 76 (80)
T 1x3h_A 4 GSSGKDFLAMFSPKCGGCNRPVLE-NYLSAMDTVWHPECFVCGDCFTSFSTGSFF-ELDGRPFCELHYHHRRGSG 76 (80)
T ss_dssp CCCCCCCCCCCSCBCTTTCCBCCS-SCEEETTEEECTTTCBCSSSCCBSCSSCCE-ESSSCEECHHHHHHHHSSS
T ss_pred ccchhHHhhhcCCccccCCCeecc-eeEEECCCeEecCcCChhhCCCCCCCCcEE-eECCEEECHHHHHHHcCCC
Confidence 578889999889999999999975 788999999999999999999999876666 4999999999999999984
No 34
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.54 E-value=4.4e-15 Score=111.74 Aligned_cols=73 Identities=27% Similarity=0.598 Sum_probs=64.5
Q ss_pred CCCCCCCCCCcccc-cceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCcCCCCCc
Q psy16551 197 KGEGCPRCGGAVFA-AEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFGYGHSPT 270 (281)
Q Consensus 197 ~~~~C~~C~~~I~~-~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~c~~~~~ 270 (281)
+..+|++|+++|.. ++.+.++++.||++||+|..|+++|.+..++ ..+|++||+.||.++|+++|.+|+..+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 4 GSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFV-AKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCE-EETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred CCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeE-CcCCEEEChhHhhhhcCCccccCCCccc
Confidence 34599999999975 6677899999999999999999999766554 6999999999999999999999988664
No 35
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4.3e-15 Score=107.58 Aligned_cols=75 Identities=16% Similarity=0.494 Sum_probs=66.9
Q ss_pred ccccccccCCCCCCCCcCCCcccc-ccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCC
Q psy16551 83 TVIDTAKIKAAPGKGCPRCGGVVF-AAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPH 158 (281)
Q Consensus 83 ~~~~~~~~~~~~~~~C~~C~~~I~-~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~ 158 (281)
.+++..++.....+.|++|+++|. +..++.++++.||++||+|..|+++|.+..++ .+++++||+.||.++|+++
T Consensus 3 ~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~-~~~~~~~C~~c~~~~~~~~ 78 (82)
T 2ehe_A 3 SGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFT-CQDSELLCNDCYCSAFSSG 78 (82)
T ss_dssp CCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEE-EETTEEEETTTSSCCGGGS
T ss_pred ceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccE-eeCCEEECHHHHhhhcCCC
Confidence 357889999999999999999998 45677889999999999999999999987766 4999999999999999883
No 36
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=3.1e-15 Score=105.58 Aligned_cols=66 Identities=30% Similarity=0.747 Sum_probs=58.6
Q ss_pred CCCCCCCCCccccc-ceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCc
Q psy16551 198 GEGCPRCGGAVFAA-EQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFG 264 (281)
Q Consensus 198 ~~~C~~C~~~I~~~-~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~ 264 (281)
..+|++|+++|... +.+.++++.||++||+|..|+++|....++ ..++++||+.||.++|+++|++
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFV-PDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEE-EETTEEEEHHHHHHHTSCCCCC
T ss_pred CCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccC-CcCCeEECHHHHHHHccCcCCC
Confidence 45899999999875 567799999999999999999999876654 6899999999999999999963
No 37
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=8.5e-15 Score=106.18 Aligned_cols=68 Identities=22% Similarity=0.483 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCcccccceeeecCcccccccccccccCCCCCCCcccc-CCCCcccChhhhccccCCCCC
Q psy16551 196 RKGEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACD-GPDKEIYCKACYGKNFGPKGF 263 (281)
Q Consensus 196 ~~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~-~~~g~~~C~~c~~~~f~~~c~ 263 (281)
++..+|++|+++|...+.+.++++.||++||+|..|++.|....++. +.||++||+.||.++|++...
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~ 81 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPSS 81 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCCC
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCCC
Confidence 45569999999998888888999999999999999999998877753 589999999999999988654
No 38
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=3.7e-15 Score=105.17 Aligned_cols=65 Identities=26% Similarity=0.732 Sum_probs=58.0
Q ss_pred CCCCCCCCcccccc-eeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCc
Q psy16551 199 EGCPRCGGAVFAAE-QQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFG 264 (281)
Q Consensus 199 ~~C~~C~~~I~~~~-~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~ 264 (281)
.+|++|+++|...+ .+.++++.||++||+|..|+++|.+..++ ..++++||+.||.++|+++|.+
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFI-PKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEE-EETTEEEEHHHHHHHTSSCCCC
T ss_pred CCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccC-ccCCeEECHHHHhHHhCCCCCC
Confidence 49999999998764 66799999999999999999999877654 6899999999999999999963
No 39
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=7.8e-15 Score=106.01 Aligned_cols=74 Identities=22% Similarity=0.438 Sum_probs=64.8
Q ss_pred ccccccccCCCCCCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCC
Q psy16551 83 TVIDTAKIKAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPH 158 (281)
Q Consensus 83 ~~~~~~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~ 158 (281)
.+++..++. ...+.|++|+++|. ++.+.++++.||++||+|..|+++|.+..|+...+|++||+.||.++|+++
T Consensus 4 ~~yC~~~y~-~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~ 77 (81)
T 2dlo_A 4 GSSGEGCYV-ATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASG 77 (81)
T ss_dssp CCCCCCCCC-SSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSS
T ss_pred CEECHHHhh-cCCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCc
Confidence 457888888 68899999999997 578899999999999999999999997766543378999999999999984
No 40
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=6e-15 Score=105.33 Aligned_cols=64 Identities=25% Similarity=0.623 Sum_probs=57.4
Q ss_pred CCCCCCcCCCccccc---cceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCC
Q psy16551 93 APGKGCPRCGGVVFA---AEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGP 157 (281)
Q Consensus 93 ~~~~~C~~C~~~I~~---~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~ 157 (281)
...+.|++|+++|.+ .+++.++++.||++||+|..|+++|.+..++. +++++||+.||.++|++
T Consensus 3 ~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~-~~g~~yC~~cy~~~f~~ 69 (76)
T 1x68_A 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLT-QNKEIFCQKCGSGMDTD 69 (76)
T ss_dssp TCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEE-ETTEEEETTTTCCCCCC
T ss_pred ccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEe-ECCEEECHHHhhhhhCC
Confidence 356789999999983 47889999999999999999999999776664 99999999999999998
No 41
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=3.4e-15 Score=116.48 Aligned_cols=72 Identities=26% Similarity=0.560 Sum_probs=63.8
Q ss_pred CCCCCCCCCcccccceeeecCcccccccccccccCCCCCC--CccccCCCCcccChhhhccccCC--CCCcCCCCCc
Q psy16551 198 GEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDS--VLACDGPDKEIYCKACYGKNFGP--KGFGYGHSPT 270 (281)
Q Consensus 198 ~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~--~~~~~~~~g~~~C~~c~~~~f~~--~c~~c~~~~~ 270 (281)
..+|++|+++|...+.+.++++.||++||+|..|+++|.. ..+ +.++|++||+.||.++|++ +|.+|+..+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~-~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECC-EEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred CCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeE-EEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 3499999999988777889999999999999999999962 334 4799999999999999999 9999998774
No 42
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=8.3e-15 Score=105.83 Aligned_cols=74 Identities=16% Similarity=0.334 Sum_probs=65.4
Q ss_pred cccccccCCCCCCCCcCCCccccccceeeccCcccccCceeccccCCCCCC-CCeeeCCCCcccCccchhhccCCC
Q psy16551 84 VIDTAKIKAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDS-INACDGPDKDIYCKTCYGKKWGPH 158 (281)
Q Consensus 84 ~~~~~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~-~~~~~~~~g~~~C~~cy~~~~~~~ 158 (281)
+++..++.....+.|++|+++|. ++.+.++++.||++||+|..|+++|.. ..+...+++++||+.||.++|++.
T Consensus 4 ~yC~~~y~~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~ 78 (81)
T 1x6a_A 4 GSSGKDYWGKFGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGP 78 (81)
T ss_dssp CCCCCCSSCCSSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTT
T ss_pred ccchhHHhhhcCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCC
Confidence 57888999999999999999998 688999999999999999999999975 444424899999999999999874
No 43
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.52 E-value=4.7e-15 Score=116.15 Aligned_cols=71 Identities=25% Similarity=0.491 Sum_probs=65.0
Q ss_pred CCCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCcCCCCCc
Q psy16551 199 EGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFGYGHSPT 270 (281)
Q Consensus 199 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~c~~~~~ 270 (281)
.+|++|+++|..++.+.++|+.||++||+|..|+++|.+..++ .++|++||+.||.++|+++|.+|+..+.
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 4 PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYV-MVNDKPVCKPCYVKNHAVVCQGCHNAID 74 (126)
T ss_dssp CBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEE-EETTEEEEHHHHHHHSCCBCTTTCSBCC
T ss_pred CCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEE-eECCEEechHHhCcCcCccCcccCCcCC
Confidence 4899999999878888899999999999999999999876554 6999999999999999999999998765
No 44
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.52 E-value=4.8e-15 Score=102.84 Aligned_cols=62 Identities=26% Similarity=0.500 Sum_probs=56.6
Q ss_pred CCCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCC
Q psy16551 94 PGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGP 157 (281)
Q Consensus 94 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~ 157 (281)
..+.|++|+++|. ++.+.++++.||++||+|..|+++|.+..++ .++|++||+.||.++|++
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~~f~~ 65 (66)
T 1nyp_A 4 GVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHY-ERKGLAYCETHYNQLFGD 65 (66)
T ss_dssp CCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCE-EETTEEECHHHHHHHCSC
T ss_pred CCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceE-eECCcEECHHHHHHHhCC
Confidence 4678999999998 7889999999999999999999999986666 499999999999999987
No 45
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=1.3e-14 Score=106.83 Aligned_cols=66 Identities=24% Similarity=0.457 Sum_probs=58.5
Q ss_pred CCCCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCCCC
Q psy16551 93 APGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPHGY 160 (281)
Q Consensus 93 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~~~ 160 (281)
.....|.+|++.|++ +++.++++.||.+||+|..|++.|....++. +++++||+.||.++|+++|.
T Consensus 23 ~~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~-~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AVVKARDKYRHPECFVCADCNLNLKQKGYFF-VEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CSCCBCTTTCCBCCS-CCEESSSCEECTTTCCCSSSCCCTTTSCCEE-ETTEEECHHHHHHHSSSCCC
T ss_pred CcCCCcccCCCEecc-cEEEECCceECccCCEecCCCCCCCCCCeEe-ECCEEECHHHHHHHhCCCCC
Confidence 345789999999975 7899999999999999999999999766664 89999999999999999764
No 46
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.3e-14 Score=105.15 Aligned_cols=64 Identities=27% Similarity=0.557 Sum_probs=57.7
Q ss_pred CCCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeee-CCCCcccCccchhhccCC
Q psy16551 94 PGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACD-GPDKDIYCKTCYGKKWGP 157 (281)
Q Consensus 94 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~-~~~g~~~C~~cy~~~~~~ 157 (281)
....|.+|++.|+..+++.++++.||++||+|..|++.|....++. .++|++||+.||.++|.+
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~ 78 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSG 78 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCC
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcC
Confidence 4578999999999889999999999999999999999999887763 489999999999998865
No 47
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.6e-14 Score=106.78 Aligned_cols=69 Identities=28% Similarity=0.633 Sum_probs=60.9
Q ss_pred cCCCCCCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCCC
Q psy16551 90 IKAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPHG 159 (281)
Q Consensus 90 ~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~~ 159 (281)
+.......|++|++.|++.+.+.++++.||.+||+|..|+++|....++ .+++++||+.||.++|+++|
T Consensus 10 ~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~~f~~kc 78 (91)
T 2d8y_A 10 FQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYA-SLHGRIYCKPHFNQLFKSKG 78 (91)
T ss_dssp SCSSSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCC-CSSSCCCCHHHHHHHSCCCS
T ss_pred cCCCCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcE-eECCEEECHHHHHHHhCCCc
Confidence 3344567899999999988899999999999999999999999987655 59999999999999999953
No 48
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=4.2e-15 Score=106.29 Aligned_cols=66 Identities=27% Similarity=0.583 Sum_probs=56.4
Q ss_pred CCCCCCCCCCcccccce-eeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCC
Q psy16551 197 KGEGCPRCGGAVFAAEQ-QLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGF 263 (281)
Q Consensus 197 ~~~~C~~C~~~I~~~~~-v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~ 263 (281)
...+|++|+++|...+. +.+.|+.||++||+|..|+++|....++ ..+|++||+.||.++|+++|+
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFY-EFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSE-EETTEEECHHHHHHHCCCC--
T ss_pred CCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeE-eECCeEeCHHHHHHHhhcccC
Confidence 44599999999986554 4599999999999999999999776654 689999999999999999995
No 49
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=9.4e-15 Score=102.28 Aligned_cols=65 Identities=23% Similarity=0.619 Sum_probs=58.1
Q ss_pred CCCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCCCC
Q psy16551 94 PGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPHGY 160 (281)
Q Consensus 94 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~~~ 160 (281)
..+.|.+|+++|. ++.+.++++.||++||+|..|+++|.+..++ .+++++||+.||.++|++++.
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~C~ 68 (69)
T 2cur_A 4 GSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFT-AVEDQYYCVDCYKNFVSGPSS 68 (69)
T ss_dssp CCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEE-ECSSCEEEHHHHHHHHTCSCC
T ss_pred CcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccE-eECCEEECHHHhHHHhcCCCC
Confidence 4578999999997 5789999999999999999999999876666 499999999999999998754
No 50
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.5e-14 Score=104.13 Aligned_cols=73 Identities=23% Similarity=0.580 Sum_probs=66.1
Q ss_pred cccccccCCCCCCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCC
Q psy16551 84 VIDTAKIKAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPH 158 (281)
Q Consensus 84 ~~~~~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~ 158 (281)
+++..++.....+.|++|+++|.+ +.+.++++.||.+||+|..|+++|.+..++ .+++++||+.||.++|+++
T Consensus 4 ~yC~~cy~~~~~~~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~ 76 (80)
T 2cuq_A 4 GSSGPCYENKFAPRCARCSKTLTQ-GGVTYRDQPWHRECLVCTGCQTPLAGQQFT-SRDEDPYCVACFGELFASG 76 (80)
T ss_dssp CSCCCCCCCCSSCCCTTTCCCCCS-CCEESSSSEECTTTCBCSSSCCBCTTCCEE-ECSSSEEEHHHHHHHTTCS
T ss_pred EEcHHHHccccCCcCCCCCCEecC-cEEEECCchhhhhhCCcccCCCcCCCCeeE-eECCEEECHHHHHHHcCCC
Confidence 578889999889999999999975 688999999999999999999999876666 4999999999999999984
No 51
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.51 E-value=1.3e-14 Score=120.89 Aligned_cols=70 Identities=24% Similarity=0.501 Sum_probs=63.5
Q ss_pred CCCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCcCCCCCc
Q psy16551 199 EGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFGYGHSPT 270 (281)
Q Consensus 199 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~c~~~~~ 270 (281)
.+|++|+++|...+.+.++++.||++||+|..|+++|.+..| .++|++||..||.++|+++|.+|+..+.
T Consensus 61 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f--~~~g~~yC~~~y~~~f~~kC~~C~~~I~ 130 (182)
T 2jtn_A 61 PMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF--SRGESVYCKDDFFKRFGTKCAACQLGIP 130 (182)
T ss_dssp CBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE--EETTEEECHHHHHHTTSCCCTTTCCCCC
T ss_pred CcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce--eECCEeeecCccccccccccccCCCccC
Confidence 499999999987767779999999999999999999987654 5899999999999999999999998764
No 52
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.7e-14 Score=106.13 Aligned_cols=67 Identities=21% Similarity=0.428 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCc
Q psy16551 196 RKGEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFG 264 (281)
Q Consensus 196 ~~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~ 264 (281)
....+|++|++.|.. +.+.++++.||++||+|..|++.|....++ ..++++||+.||.++|+++|.+
T Consensus 23 ~~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~~f~p~~~g 89 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AVVKARDKYRHPECFVCADCNLNLKQKGYF-FVEGELYCETHARARTSGPSSG 89 (89)
T ss_dssp CSCCBCTTTCCBCCS-CCEESSSCEECTTTCCCSSSCCCTTTSCCE-EETTEEECHHHHHHHSSSCCCC
T ss_pred CcCCCcccCCCEecc-cEEEECCceECccCCEecCCCCCCCCCCeE-eECCEEECHHHHHHHhCCCCCC
Confidence 345689999999975 667799999999999999999999876665 5799999999999999999864
No 53
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.4e-14 Score=102.18 Aligned_cols=65 Identities=23% Similarity=0.548 Sum_probs=56.9
Q ss_pred CCCCCCCCCCcccc---cceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCC
Q psy16551 197 KGEGCPRCGGAVFA---AEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKG 262 (281)
Q Consensus 197 ~~~~C~~C~~~I~~---~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c 262 (281)
+..+|++|+++|.. .+.+.++++.||++||+|..|+++|.+..|+ ..++++||+.||.++|++++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFL-TERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCE-ECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccE-eECCEEEChhHcCcccCCCC
Confidence 34599999999985 3566789999999999999999999876664 58999999999999999986
No 54
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.50 E-value=5.4e-15 Score=102.57 Aligned_cols=62 Identities=24% Similarity=0.505 Sum_probs=55.7
Q ss_pred CCCCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCC
Q psy16551 198 GEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPK 261 (281)
Q Consensus 198 ~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~ 261 (281)
..+|++|+++|. ++.+.++++.||++||+|..|+++|.+..++ ..+|++||+.||.++|++|
T Consensus 5 ~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHY-ERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCE-EETTEEECHHHHHHHCSCC
T ss_pred CCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceE-eECCcEECHHHHHHHhCCC
Confidence 348999999997 7778899999999999999999999876664 6999999999999999986
No 55
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=3.2e-14 Score=104.89 Aligned_cols=66 Identities=26% Similarity=0.630 Sum_probs=59.1
Q ss_pred CCCCCCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCC
Q psy16551 91 KAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPH 158 (281)
Q Consensus 91 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~ 158 (281)
.....+.|++|+++|. ++++.++++.||++||+|..|+++|.+..|+ .+++++||+.||.++|+|+
T Consensus 21 ~~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~cy~~~f~~~ 86 (90)
T 2dar_A 21 AGKRTPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFV-EEKGALYCELCYEKFFASG 86 (90)
T ss_dssp TTTCCCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBE-ESSSCEECHHHHHHHTSCC
T ss_pred CCCCCCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeE-eECCEEECHHHHHHHcCCC
Confidence 3456789999999995 6889999999999999999999999977666 4999999999999999985
No 56
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=7.2e-15 Score=105.75 Aligned_cols=65 Identities=20% Similarity=0.435 Sum_probs=57.8
Q ss_pred CCCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCCCC
Q psy16551 94 PGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPHGY 160 (281)
Q Consensus 94 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~~~ 160 (281)
..+.|.+|+++|++ +++.++++.||.+||+|..|++.|....++ .+++++||+.||.++|+|+|.
T Consensus 14 ~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VFVKLRDRHRHPECYVCTDCGTNLKQKGHF-FVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCCSSSCCCCCS-SCEECSSCEECTTTTSCSSSCCCHHHHCCE-ESSSCEECHHHHHHHHSSCCC
T ss_pred CCCccccCCCCccC-cEEEECcceeCcCcCeeCCCCCCCCCCCeE-eECCEEECHHHHHHHhCCCCC
Confidence 35789999999975 789999999999999999999999876565 499999999999999999754
No 57
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=2.1e-14 Score=101.33 Aligned_cols=64 Identities=25% Similarity=0.647 Sum_probs=57.0
Q ss_pred CCCCCcCCCccccc---cceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCC
Q psy16551 94 PGKGCPRCGGVVFA---AEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPH 158 (281)
Q Consensus 94 ~~~~C~~C~~~I~~---~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~ 158 (281)
..+.|.+|+++|.+ .+++.++++.||++||+|..|+++|.+..|+. ++|++||+.||.++|+|+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~-~~g~~yC~~c~~~~~~p~ 70 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLT-ERDDILCPDCGKDISGPS 70 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEE-CSSSEECHHHHHTCCCSS
T ss_pred CCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEe-ECCEEEChhHcCcccCCC
Confidence 45789999999984 47788999999999999999999999777664 999999999999999884
No 58
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=1.9e-14 Score=101.52 Aligned_cols=65 Identities=29% Similarity=0.763 Sum_probs=58.2
Q ss_pred CCCCCCcCCCcccccc-ceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCC
Q psy16551 93 APGKGCPRCGGVVFAA-EQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPH 158 (281)
Q Consensus 93 ~~~~~C~~C~~~I~~~-~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~ 158 (281)
...+.|.+|+++|... +++.++++.||.+||+|..|+++|....++ .++|++||+.||.++|+++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~ 68 (72)
T 1wyh_A 3 SGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFV-PDKGAHYCVPCYENKFASG 68 (72)
T ss_dssp CCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEE-EETTEEEEHHHHHHHTSCC
T ss_pred ccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccC-CcCCeEECHHHHHHHccCc
Confidence 3567899999999874 778999999999999999999999987766 4899999999999999984
No 59
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=3.2e-14 Score=99.78 Aligned_cols=64 Identities=25% Similarity=0.651 Sum_probs=57.2
Q ss_pred CCCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCCC
Q psy16551 94 PGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPHG 159 (281)
Q Consensus 94 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~~ 159 (281)
..+.|.+|+++|. ++.+.++++.||++||+|..|+++|.+..++ .+++++||+.||.++|++++
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~c 67 (70)
T 2d8z_A 4 GSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFT-ARDDFAYCLNCFCDLYASGP 67 (70)
T ss_dssp CCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCE-ESSSSEECHHHHHHHTCCCC
T ss_pred CCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceE-eeCCeEECHHHHHHHhcccc
Confidence 4578999999997 5779999999999999999999999877666 49999999999999999853
No 60
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=2e-14 Score=100.85 Aligned_cols=65 Identities=22% Similarity=0.590 Sum_probs=57.4
Q ss_pred CCCCCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCC
Q psy16551 197 KGEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGF 263 (281)
Q Consensus 197 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~ 263 (281)
+..+|+.|+++|. ++.+.++++.||++||+|..|+++|....|+ ..++++||..||.++|+++..
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 4 GSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFV-KNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp CSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCE-EETTEEECHHHHHHHHCCCSC
T ss_pred CCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccE-eECCeEECHHHhhhhcCCCCC
Confidence 4458999999997 5677899999999999999999999877654 589999999999999998874
No 61
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=9.6e-15 Score=105.08 Aligned_cols=66 Identities=20% Similarity=0.403 Sum_probs=57.8
Q ss_pred CCCCCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCc
Q psy16551 197 KGEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFG 264 (281)
Q Consensus 197 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~ 264 (281)
...+|++|+++|.. +.+.++++.||++||+|..|++.|....++ ..++++||+.||.++|++++.+
T Consensus 14 ~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~cy~~~~~p~g~g 79 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VFVKLRDRHRHPECYVCTDCGTNLKQKGHF-FVEDQIYCEKHARERVSGPSSG 79 (79)
T ss_dssp CCCCCSSSCCCCCS-SCEECSSCEECTTTTSCSSSCCCHHHHCCE-ESSSCEECHHHHHHHHSSCCCC
T ss_pred CCCccccCCCCccC-cEEEECcceeCcCcCeeCCCCCCCCCCCeE-eECCEEECHHHHHHHhCCCCCC
Confidence 34599999999975 577899999999999999999999765554 6899999999999999999864
No 62
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=2.4e-14 Score=100.89 Aligned_cols=65 Identities=26% Similarity=0.742 Sum_probs=58.0
Q ss_pred CCCCCCcCCCcccccc-ceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCC
Q psy16551 93 APGKGCPRCGGVVFAA-EQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPH 158 (281)
Q Consensus 93 ~~~~~C~~C~~~I~~~-~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~ 158 (281)
...+.|.+|+++|... .++.++++.||.+||+|..|+++|....++ .++|++||+.||.++|+++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~ 68 (72)
T 1x4k_A 3 SGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFI-PKDNQNFCVPCYEKQHASG 68 (72)
T ss_dssp SCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEE-EETTEEEEHHHHHHHTSSC
T ss_pred ccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccC-ccCCeEECHHHHhHHhCCC
Confidence 3567899999999875 578899999999999999999999987766 4999999999999999984
No 63
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=2.9e-14 Score=102.61 Aligned_cols=64 Identities=20% Similarity=0.361 Sum_probs=56.6
Q ss_pred CCCCCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCC
Q psy16551 197 KGEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGF 263 (281)
Q Consensus 197 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~ 263 (281)
+..+|++|+++|. ++.+.++++.||++||+|..|+++|.+.. + ..+|++||..||.++|++.+.
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f-~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADA-R-ELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-E-EETTEEECHHHHHTTSCCSSC
T ss_pred CCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCC-E-eECCEEeCHHHHHHhCCCCCC
Confidence 3458999999997 66788999999999999999999998764 3 689999999999999999764
No 64
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.7e-14 Score=101.36 Aligned_cols=70 Identities=24% Similarity=0.552 Sum_probs=62.3
Q ss_pred ccccccccCCCCCCCCcCCCccccc----cceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhh
Q psy16551 83 TVIDTAKIKAAPGKGCPRCGGVVFA----AEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGK 153 (281)
Q Consensus 83 ~~~~~~~~~~~~~~~C~~C~~~I~~----~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~ 153 (281)
.+++..++.....+.|++|+++|.+ .+.+.++++.||++||+|..|+++|.+..++ .++|++||+.||.+
T Consensus 3 ~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~-~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 3 SGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFV-FHQEQVYCPDCAKK 76 (77)
T ss_dssp SSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCC-EETTEECCHHHHHH
T ss_pred CeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccE-eECCEEEChHHhcc
Confidence 3578889999999999999999983 4788999999999999999999999977666 49999999999975
No 65
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=2.9e-14 Score=101.89 Aligned_cols=65 Identities=25% Similarity=0.532 Sum_probs=56.8
Q ss_pred CCCCCCcCCCccccccce-eeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCC
Q psy16551 93 APGKGCPRCGGVVFAAEQ-VLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPH 158 (281)
Q Consensus 93 ~~~~~C~~C~~~I~~~~~-~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~ 158 (281)
.....|++|+++|+..+. +.++|+.||.+||+|..|+++|....++ .++|++||+.||.++|+++
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~~f~~~ 74 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFY-EFEGRKYCEHDFQMLFAPC 74 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSE-EETTEEECHHHHHHHCCCC
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeE-eECCeEeCHHHHHHHhhcc
Confidence 456889999999986444 5799999999999999999999976665 4999999999999999983
No 66
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.44 E-value=3.1e-14 Score=112.12 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=62.8
Q ss_pred CCCCCCCCcccccceeeecCcccccccccccccCCCCCC-CccccCCCCcccChhhhccccCC--CCCcCCCCCc
Q psy16551 199 EGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDS-VLACDGPDKEIYCKACYGKNFGP--KGFGYGHSPT 270 (281)
Q Consensus 199 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~-~~~~~~~~g~~~C~~c~~~~f~~--~c~~c~~~~~ 270 (281)
.+|++|+++|...+.+.++++.||++||+|..|+++|.. +..++.++|++||+.||.++|++ +|.+|+..+.
T Consensus 3 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 3 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp CBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred ccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 489999999987767789999999999999999999963 22334699999999999999999 9999998663
No 67
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.43 E-value=4.6e-14 Score=116.12 Aligned_cols=71 Identities=24% Similarity=0.473 Sum_probs=63.5
Q ss_pred CCCCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCcCCCCCc
Q psy16551 198 GEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFGYGHSPT 270 (281)
Q Consensus 198 ~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~c~~~~~ 270 (281)
..+|++|+++|...+.+.++|+.||++||+|..|+++|.+..| .+||++||..||.++|+++|.+|+..+.
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f--~~~g~~yC~~~y~~~f~~~C~~C~~~I~ 76 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF--SRGESVYCKDDFFKRFGTKCAACQLGIP 76 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE--ESSSCEECHHHHHHHHSCBCTTTCCBCC
T ss_pred CCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc--ccCCeeeecccccccccccccccccccC
Confidence 3489999999987767779999999999999999999987654 5899999999999999999999998764
No 68
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=5.1e-14 Score=98.75 Aligned_cols=63 Identities=24% Similarity=0.680 Sum_probs=56.6
Q ss_pred CCCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCC
Q psy16551 94 PGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPH 158 (281)
Q Consensus 94 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~ 158 (281)
....|.+|+++|. ++++.++++.||++||+|..|+++|....|+ .++|++||+.||.++|+++
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~c~~~~~~~~ 66 (70)
T 2d8x_A 4 GSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFV-KNAGRHLCRPCHNREKASG 66 (70)
T ss_dssp CSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCE-EETTEEECHHHHHHHHCCC
T ss_pred CCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccE-eECCeEECHHHhhhhcCCC
Confidence 4578999999997 5789999999999999999999999987666 4899999999999999873
No 69
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.42 E-value=7.7e-14 Score=98.34 Aligned_cols=67 Identities=25% Similarity=0.635 Sum_probs=56.0
Q ss_pred CCCCCCCCCCcccccc-eeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCcC
Q psy16551 197 KGEGCPRCGGAVFAAE-QQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFGY 265 (281)
Q Consensus 197 ~~~~C~~C~~~I~~~~-~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~c 265 (281)
+..+|++|+++|...+ .+.++++.||++||+|..|+++|.+..++ ..++++||+.||.++|+ +|..+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~~~-~~~~~ 71 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFY-AVERRAYCEGCYVATLE-SGPSS 71 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEE-ESSSCEEEHHHHHHHHH-TCSSC
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCE-eeCCeEECHHHHHHHHc-cCCCC
Confidence 3459999999998654 67799999999999999999999765554 68999999999999984 45443
No 70
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.42 E-value=8.9e-14 Score=100.02 Aligned_cols=63 Identities=21% Similarity=0.468 Sum_probs=56.5
Q ss_pred CCCCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCCC
Q psy16551 93 APGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPH 158 (281)
Q Consensus 93 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~~ 158 (281)
...++|++|+++|. ++.+.++++.||++||+|..|+++|.... + .++|++||+.||.++|+|.
T Consensus 13 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f-~~~g~~yC~~cy~~~f~p~ 75 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADA-R-ELKGELYCLPCHDKMGVSG 75 (79)
T ss_dssp CCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-E-EETTEEECHHHHHTTSCCS
T ss_pred cCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCC-E-eECCEEeCHHHHHHhCCCC
Confidence 34578999999998 68899999999999999999999999775 3 5899999999999999884
No 71
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.41 E-value=1e-13 Score=108.23 Aligned_cols=63 Identities=29% Similarity=0.639 Sum_probs=55.1
Q ss_pred CCCCCCcCCCccccccceeeccCcccccCceeccccCCCCC--CCCeeeCCCCcccCccchhhccC
Q psy16551 93 APGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLD--SINACDGPDKDIYCKTCYGKKWG 156 (281)
Q Consensus 93 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~g~~~C~~cy~~~~~ 156 (281)
...+.|++|+++|++.+++.++++.||++||+|..|+++|. +..++ .++|++||+.||.++|+
T Consensus 59 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~-~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 59 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCB-CSSSCCBCHHHHHHHCC
T ss_pred ccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceE-EECCEEeCHHHhhhhcC
Confidence 34678999999999777799999999999999999999997 23444 69999999999999885
No 72
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=1.2e-13 Score=97.38 Aligned_cols=63 Identities=27% Similarity=0.628 Sum_probs=55.4
Q ss_pred CCCCCcCCCcccccc-ceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCC
Q psy16551 94 PGKGCPRCGGVVFAA-EQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGP 157 (281)
Q Consensus 94 ~~~~C~~C~~~I~~~-~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~ 157 (281)
..+.|.+|+++|+.. ..+.++++.||.+||+|..|+++|.+..++ .+++++||+.||.++|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFY-AVERRAYCEGCYVATLES 67 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEE-ESSSCEEEHHHHHHHHHT
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCE-eeCCeEECHHHHHHHHcc
Confidence 467899999999864 578899999999999999999999876666 499999999999998853
No 73
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=1.2e-13 Score=97.87 Aligned_cols=62 Identities=16% Similarity=0.378 Sum_probs=54.5
Q ss_pred CCCCCcCCCccccccceeeccCcccccCceeccccCCCCC-CCCeeeCCCCcccCccchhhccCC
Q psy16551 94 PGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLD-SINACDGPDKDIYCKTCYGKKWGP 157 (281)
Q Consensus 94 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~g~~~C~~cy~~~~~~ 157 (281)
+.+.|++|+++|.+ +.+.++++.||++||+|..|+++|. +..++ .+++++||+.||.+++..
T Consensus 4 ~~~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~-~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 4 GSSGCDSCEKYITG-RVLEAGEKHYHPSCALCVRCGQMFAEGEEMY-LQGSSIWHPACRQAARTE 66 (73)
T ss_dssp SCCSCSSSCCCCSS-CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCE-EETTEEECTTHHHHTSSS
T ss_pred CcCCcccCCCEecC-eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeE-eeCCEEEChHHChHhhcc
Confidence 46789999999975 8899999999999999999999998 45554 589999999999988764
No 74
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.41 E-value=7.2e-14 Score=98.24 Aligned_cols=65 Identities=23% Similarity=0.522 Sum_probs=56.6
Q ss_pred CCCCCCCCcCCCccccccce-eeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccC
Q psy16551 91 KAAPGKGCPRCGGVVFAAEQ-VLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWG 156 (281)
Q Consensus 91 ~~~~~~~C~~C~~~I~~~~~-~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~ 156 (281)
.......|++|+++|...+. +.+.++.||++||+|..|+++|....++ .++|++||+.||.++|+
T Consensus 7 ~~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 7 QGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFY-EFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CCCTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCE-EETTEEECHHHHHHHTC
T ss_pred cCcCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeE-eECCeEeCHHHHHHhhC
Confidence 44567899999999987775 5799999999999999999999877655 49999999999999874
No 75
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=1.5e-13 Score=97.34 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=55.4
Q ss_pred CCCCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCc
Q psy16551 198 GEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFG 264 (281)
Q Consensus 198 ~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~ 264 (281)
..+|++|+++|.. +.+.++++.||++||+|..|+++|..+..++..++++||..||.++++..-.+
T Consensus 5 ~~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~~~r 70 (73)
T 1wig_A 5 SSGCDSCEKYITG-RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDSGP 70 (73)
T ss_dssp CCSCSSSCCCCSS-CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSSCCS
T ss_pred cCCcccCCCEecC-eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcccccC
Confidence 4599999999965 67779999999999999999999973344456899999999999988865433
No 76
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.40 E-value=1.2e-13 Score=107.78 Aligned_cols=69 Identities=20% Similarity=0.328 Sum_probs=58.8
Q ss_pred CCCCCCCcccccce-eeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCcCCCC
Q psy16551 200 GCPRCGGAVFAAEQ-QLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFGYGHS 268 (281)
Q Consensus 200 ~C~~C~~~I~~~~~-v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~c~~~ 268 (281)
+|++|+++|...+. +.++++.||++||+|..|++.|..+..+...++++||..||.++|+++|..++.+
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~ 79 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSG 79 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCC
T ss_pred cccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCC
Confidence 89999999987554 4699999999999999999999544333468999999999999999999776655
No 77
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.40 E-value=1.1e-13 Score=116.24 Aligned_cols=72 Identities=47% Similarity=0.957 Sum_probs=64.7
Q ss_pred CCCCCCCCCCcccccceeeecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccCCCCCcCCCCC
Q psy16551 197 KGEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFGYGHSP 269 (281)
Q Consensus 197 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~~~c~~c~~~~ 269 (281)
+..+|.+|+++|..++.+.++++.||++||+|..|+++|....++ ..+|++||+.||.++|+++|.+|+.+.
T Consensus 6 ~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~cy~~~f~~~c~~c~~~~ 77 (192)
T 1b8t_A 6 GGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVA-VHGDEIYCKSCYGKKYGPKGKGKGMGA 77 (192)
T ss_dssp CCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEE-EETTEEEEHHHHHHHHSCCCCCCCCCC
T ss_pred CCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeE-ecCCEeeChhhhHhhcCcccccccccc
Confidence 345899999999888888899999999999999999999877654 689999999999999999999998665
No 78
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.39 E-value=1.1e-13 Score=97.27 Aligned_cols=62 Identities=27% Similarity=0.608 Sum_probs=54.3
Q ss_pred CCCCCCCCCCccccccee-eecCcccccccccccccCCCCCCCccccCCCCcccChhhhccccC
Q psy16551 197 KGEGCPRCGGAVFAAEQQ-LAKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKNFG 259 (281)
Q Consensus 197 ~~~~C~~C~~~I~~~~~v-~~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~f~ 259 (281)
...+|++|+++|...+.+ .+.++.||++||+|..|+++|....++ ..+|++||+.||.++||
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFY-EFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCE-EETTEEECHHHHHHHTC
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeE-eECCeEeCHHHHHHhhC
Confidence 455999999999877765 599999999999999999999766554 68999999999999986
No 79
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.39 E-value=1.7e-13 Score=106.85 Aligned_cols=62 Identities=26% Similarity=0.610 Sum_probs=54.2
Q ss_pred CCCCCCCCCCcccccceeeecCcccccccccccccCCCCC--CCccccCCCCcccChhhhccccC
Q psy16551 197 KGEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLD--SVLACDGPDKEIYCKACYGKNFG 259 (281)
Q Consensus 197 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~--~~~~~~~~~g~~~C~~c~~~~f~ 259 (281)
...+|++|+++|...+.+.++++.||++||+|..|+++|. +..+ +.++|++||+.||.++||
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f-~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCC-BCSSSCCBCHHHHHHHCC
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCce-EEECCEEeCHHHhhhhcC
Confidence 3459999999998776788999999999999999999996 2344 479999999999999986
No 80
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.36 E-value=3.3e-13 Score=97.37 Aligned_cols=74 Identities=20% Similarity=0.345 Sum_probs=62.8
Q ss_pred ccccccccCCCCCCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhccCC
Q psy16551 83 TVIDTAKIKAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGP 157 (281)
Q Consensus 83 ~~~~~~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~~ 157 (281)
.++|..++.....+.|++|+++|. ++.+.++++.||++||+|..|+++|..+.++...++.+||..||.+++..
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVS 76 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSSC
T ss_pred CCcchHHHHhHhCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCCC
Confidence 357889999999999999999997 68899999999999999999999998766654344457999999887654
No 81
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.34 E-value=1.5e-13 Score=114.98 Aligned_cols=71 Identities=25% Similarity=0.558 Sum_probs=62.7
Q ss_pred CCCCCCCCcccccceeeecCcccccccccccccCCCCCC--CccccCCCCcccChhhhccccCC--CCCcCCCCCc
Q psy16551 199 EGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRPLDS--VLACDGPDKEIYCKACYGKNFGP--KGFGYGHSPT 270 (281)
Q Consensus 199 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~L~~--~~~~~~~~g~~~C~~c~~~~f~~--~c~~c~~~~~ 270 (281)
.+|++|+++|...+.+.++++.||++||+|..|+++|.. ..+ +.++|++||+.||.++|++ +|.+|+..+.
T Consensus 6 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~-~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp CBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEE-EEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred CcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceE-EEeCCccccccccccccccCCccccCCCccc
Confidence 489999999987767789999999999999999999974 344 4699999999999999999 7999998664
No 82
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.34 E-value=6.1e-13 Score=103.74 Aligned_cols=66 Identities=26% Similarity=0.407 Sum_probs=55.5
Q ss_pred CCCC--CCcCCCccccccc-eeeccCcccccCceeccccCCCCCC-CCeeeCCCCcccCccchhhccCCCC
Q psy16551 93 APGK--GCPRCGGVVFAAE-QVLAKGSEWHRKCFKCRDCNKTLDS-INACDGPDKDIYCKTCYGKKWGPHG 159 (281)
Q Consensus 93 ~~~~--~C~~C~~~I~~~~-~~~~~~~~~H~~CF~C~~C~~~L~~-~~~~~~~~g~~~C~~cy~~~~~~~~ 159 (281)
.++. .|++|++.|+..+ .+.++++.||.+||+|..|++.|.. ..|+ .+++++||+.||.++|++++
T Consensus 4 ~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~~~~~~ 73 (123)
T 2l3k_A 4 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYL-LINSDIVCEQDIYEWTKING 73 (123)
T ss_dssp SSSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHHHHHHT
T ss_pred hhCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEE-eeCCEEEcHHHhHHHhcccc
Confidence 3444 8999999998644 5689999999999999999999954 4454 59999999999999998853
No 83
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.30 E-value=6.8e-13 Score=91.69 Aligned_cols=59 Identities=22% Similarity=0.548 Sum_probs=51.8
Q ss_pred CCCCcCCCccccc-cceeeccCcccc--cCceeccccCCCCCCCCeeeCCCCcccC-ccchhhc
Q psy16551 95 GKGCPRCGGVVFA-AEQVLAKGSEWH--RKCFKCRDCNKTLDSINACDGPDKDIYC-KTCYGKK 154 (281)
Q Consensus 95 ~~~C~~C~~~I~~-~~~~~~~~~~~H--~~CF~C~~C~~~L~~~~~~~~~~g~~~C-~~cy~~~ 154 (281)
.+.|++|+++|.. .+.+.++++.|| ++||+|..|+++|.+..|+ .++|++|| .+||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFM-PVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCE-EETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceE-EECCEEecCHHHhhhh
Confidence 3579999999986 478999999999 9999999999999887766 49999999 8888654
No 84
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.27 E-value=1.3e-12 Score=90.31 Aligned_cols=58 Identities=21% Similarity=0.527 Sum_probs=50.8
Q ss_pred CCCCCCCCccccc-ceeeecCcccc--cccccccccCCCCCCCccccCCCCcccC-hhhhccc
Q psy16551 199 EGCPRCGGAVFAA-EQQLAKGTMWH--KQCFSCNVCKRPLDSVLACDGPDKEIYC-KACYGKN 257 (281)
Q Consensus 199 ~~C~~C~~~I~~~-~~v~~~g~~~H--~~Cf~C~~C~~~L~~~~~~~~~~g~~~C-~~c~~~~ 257 (281)
.+|++|+++|..+ +.+.++++.|| ++||+|..|+++|.+..|+ ..+|++|| ..||.++
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFM-PVEGMVFCSVECKKRM 64 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCE-EETTEEESSHHHHHTT
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceE-EECCEEecCHHHhhhh
Confidence 3899999999864 67789999999 9999999999999876665 68999999 8998765
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.21 E-value=5.5e-07 Score=52.34 Aligned_cols=29 Identities=38% Similarity=1.004 Sum_probs=27.2
Q ss_pred CCCCcCCCccccccceeeccCcccccCce
Q psy16551 95 GKGCPRCGGVVFAAEQVLAKGSEWHRKCF 123 (281)
Q Consensus 95 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF 123 (281)
+..|..|++.|+..|++.++|+.||+.||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 45799999999999999999999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.07 E-value=1.5e-06 Score=50.47 Aligned_cols=27 Identities=41% Similarity=1.048 Sum_probs=26.1
Q ss_pred CCCCCCCcccccceeeecCcccccccc
Q psy16551 200 GCPRCGGAVFAAEQQLAKGTMWHKQCF 226 (281)
Q Consensus 200 ~C~~C~~~I~~~~~v~~~g~~~H~~Cf 226 (281)
+|++|++.++..|.+.+.|+.||+.||
T Consensus 5 ~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp BCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred cCCccCCEEecceeEEECCeEecccCC
Confidence 899999999999999999999999998
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=88.50 E-value=2.2 Score=31.36 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=28.4
Q ss_pred CCCCCCCcccccceee--ecCcccccccccccccCCCCCCCccccCCCCcccChhhhccc
Q psy16551 200 GCPRCGGAVFAAEQQL--AKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGKN 257 (281)
Q Consensus 200 ~C~~C~~~I~~~~~v~--~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~~ 257 (281)
.|..|++.-....++. .=++.||..|+.= +|.. ..++.-+|..|....
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~p-----pl~~-----~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQP-----VMKS-----VPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSS-----CCSS-----CCSSCCCCHHHHCCS
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCC-----cccc-----CCCCCcCCcCCcCcC
Confidence 5777877654334444 4566799887642 2321 234567788886543
No 88
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=77.51 E-value=6.8 Score=28.80 Aligned_cols=41 Identities=24% Similarity=0.491 Sum_probs=25.9
Q ss_pred CCCCcCCCccccccceeecc----CcccccCceeccccCCCCCCCCeeeCCCCcccCccc
Q psy16551 95 GKGCPRCGGVVFAAEQVLAK----GSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTC 150 (281)
Q Consensus 95 ~~~C~~C~~~I~~~~~~~~~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~c 150 (281)
...|..|+. .+++|.-+ .+.||..|+. |.. ...|..||..|
T Consensus 15 ~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~-------L~~-----~P~g~W~Cp~c 59 (107)
T 4gne_A 15 EDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN-------LTQ-----PPYGKWECPWH 59 (107)
T ss_dssp CSSCTTTCC---CSEEEECCSTTCCCEECTGGGT-------CSS-----CCSSCCCCGGG
T ss_pred CCCCCcCCC---CCcEeEECCCCCCcccccccCc-------CCc-----CCCCCEECCCC
Confidence 456888884 35555433 3678987763 322 24678888887
No 89
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=73.59 E-value=1 Score=27.40 Aligned_cols=19 Identities=11% Similarity=0.268 Sum_probs=15.7
Q ss_pred cccCCCCcccChhhhcccc
Q psy16551 240 ACDGPDKEIYCKACYGKNF 258 (281)
Q Consensus 240 ~~~~~~g~~~C~~c~~~~f 258 (281)
||...+-+|+|+.||+++-
T Consensus 21 F~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 21 FFMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp SBCCTTTTTSCHHHHHHHH
T ss_pred eEEEecCccchHHHHHHHh
Confidence 4557899999999998764
No 90
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.00 E-value=3.8 Score=26.65 Aligned_cols=31 Identities=23% Similarity=0.563 Sum_probs=19.8
Q ss_pred eeccccCCCCCCCCeeeCCCCcccCccchhhcc
Q psy16551 123 FKCRDCNKTLDSINACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 123 F~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~ 155 (281)
+.|..|...+..... ..=|..||..|..+.+
T Consensus 16 ~~C~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~ 46 (66)
T 2ecy_A 16 YKCEKCHLVLCSPKQ--TECGHRFCESCMAALL 46 (66)
T ss_dssp EECTTTCCEESSCCC--CSSSCCCCHHHHHHHH
T ss_pred CCCCCCChHhcCeeE--CCCCCHHHHHHHHHHH
Confidence 667777666554222 2556778888887755
No 91
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=67.72 E-value=2.2 Score=31.70 Aligned_cols=47 Identities=19% Similarity=0.488 Sum_probs=27.7
Q ss_pred CCCCCCCcccccceee--ecCcccccccccccccCCCCCCCccccCCCCcccChhhhcc
Q psy16551 200 GCPRCGGAVFAAEQQL--AKGTMWHKQCFSCNVCKRPLDSVLACDGPDKEIYCKACYGK 256 (281)
Q Consensus 200 ~C~~C~~~I~~~~~v~--~~g~~~H~~Cf~C~~C~~~L~~~~~~~~~~g~~~C~~c~~~ 256 (281)
.|..|++.-..++++. .=.+.||..|+.= +|.. ..+|.-+|..|...
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~p-----pl~~-----~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNP-----PVAE-----PPEGSWSCHLCWEL 108 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSS-----CCSS-----CCSSCCCCHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCC-----CccC-----CCCCCeECccccch
Confidence 6777877654455554 3456788877541 2321 24566778887543
No 92
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.17 E-value=3.2 Score=28.39 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=21.6
Q ss_pred CCCCCcCCCccccccceeeccCcccccCce
Q psy16551 94 PGKGCPRCGGVVFAAEQVLAKGSEWHRKCF 123 (281)
Q Consensus 94 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF 123 (281)
....|+.|...|..+.....-+..||..|+
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCV 43 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHH
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHH
Confidence 456799999998765555555666777776
No 93
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=64.25 E-value=3.2 Score=28.01 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=23.1
Q ss_pred CceeccccCCCCCCCCeeeCCCCcccCccchhhccC
Q psy16551 121 KCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKWG 156 (281)
Q Consensus 121 ~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~~ 156 (281)
+-|.|..|...+..-. . ..-|..||..|..+.+.
T Consensus 7 ~~~~C~IC~~~~~~Pv-~-~~CgH~fc~~Ci~~~~~ 40 (78)
T 1t1h_A 7 EYFRCPISLELMKDPV-I-VSTGQTYERSSIQKWLD 40 (78)
T ss_dssp SSSSCTTTSCCCSSEE-E-ETTTEEEEHHHHHHHHT
T ss_pred ccCCCCCccccccCCE-E-cCCCCeecHHHHHHHHH
Confidence 3477888887775432 2 26788899998876553
No 94
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=63.58 E-value=5.7 Score=25.52 Aligned_cols=38 Identities=32% Similarity=0.625 Sum_probs=22.7
Q ss_pred cccccCCCCCCCccccCCCCcccC-hhhhccccCCCCC-cCCC
Q psy16551 227 SCNVCKRPLDSVLACDGPDKEIYC-KACYGKNFGPKGF-GYGH 267 (281)
Q Consensus 227 ~C~~C~~~L~~~~~~~~~~g~~~C-~~c~~~~f~~~c~-~c~~ 267 (281)
.|..|+..++....+ .+||+.|| +.|... .+... +|++
T Consensus 9 aC~~C~c~Vs~~eai-~~dGK~YCSe~Ca~g--H~~~~~~C~~ 48 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAI-DRNGLYYCSEACADG--HTGGSKGCGH 48 (55)
T ss_dssp SSTTCCCCBCTTTSE-ESSSCEESSHHHHHT--SCSSCCCCSS
T ss_pred cCCCCeeEechHHhh-hcCCeEEehHHHHcc--CCCCCCCCCC
Confidence 466777777654544 47888887 666644 24444 4443
No 95
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=59.63 E-value=3.5 Score=34.87 Aligned_cols=40 Identities=23% Similarity=0.512 Sum_probs=28.1
Q ss_pred CCCCCcCCCccccccceeeccCcccccCce----------eccccCCCCC
Q psy16551 94 PGKGCPRCGGVVFAAEQVLAKGSEWHRKCF----------KCRDCNKTLD 133 (281)
Q Consensus 94 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF----------~C~~C~~~L~ 133 (281)
....|..|...|..+.+..--+..||..|+ +|..|+..+.
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 357899999998766554445677888887 5666666543
No 96
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.77 E-value=9.1 Score=26.07 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=19.1
Q ss_pred CCCCCCCCCCcccccceeeecCcccccccc
Q psy16551 197 KGEGCPRCGGAVFAAEQQLAKGTMWHKQCF 226 (281)
Q Consensus 197 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf 226 (281)
....|+.|...|..++.-..=+..||..|+
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCV 43 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHH
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHH
Confidence 345899999998755433333445666665
No 97
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=56.66 E-value=8.1 Score=25.02 Aligned_cols=40 Identities=20% Similarity=0.379 Sum_probs=27.1
Q ss_pred CCCCcCCCccccccceeeccCcccccCce--------eccccCCCCCC
Q psy16551 95 GKGCPRCGGVVFAAEQVLAKGSEWHRKCF--------KCRDCNKTLDS 134 (281)
Q Consensus 95 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF--------~C~~C~~~L~~ 134 (281)
...|..|...+.....+..-|..||..|+ .|..|+..+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 45688898876432344456777888886 38888877754
No 98
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=55.77 E-value=5.3 Score=27.76 Aligned_cols=49 Identities=20% Similarity=0.483 Sum_probs=35.6
Q ss_pred CCCCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCc
Q psy16551 94 PGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCK 148 (281)
Q Consensus 94 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~ 148 (281)
....|.-|.+++.+..++.-....-|+-||.|+.= .+.. ....+.+||.
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~--sIk~----q~~~~EvyCP 62 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRE--SIKA----QGATGEVYCP 62 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHH--HHHH----HHSSSCCCCT
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHH--HHHh----cCCCCcEECC
Confidence 45679999999988888888899999999999742 2221 1245667774
No 99
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.63 E-value=7.2 Score=25.76 Aligned_cols=32 Identities=19% Similarity=0.461 Sum_probs=16.4
Q ss_pred eeccccCCCCCCCCeeeCCCCcccCccchhhcc
Q psy16551 123 FKCRDCNKTLDSINACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 123 F~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~ 155 (281)
+.|..|...+...... ..=|..||..|..+.+
T Consensus 16 ~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~ 47 (72)
T 2djb_A 16 ILCSICKGYLIDATTI-TECLHTFCKSCIVRHF 47 (72)
T ss_dssp GSCTTTSSCCSSCEEC-SSSCCEECHHHHHHHH
T ss_pred CCCCCCChHHHCcCEE-CCCCCHHHHHHHHHHH
Confidence 4555565555432111 1445667777765543
No 100
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=54.50 E-value=11 Score=26.65 Aligned_cols=33 Identities=27% Similarity=0.657 Sum_probs=20.2
Q ss_pred cCCCCCCCCCCCCcccccceeeecCcccccccccccccCCC
Q psy16551 194 MARKGEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVCKRP 234 (281)
Q Consensus 194 ~~~~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~ 234 (281)
.....++|..|+..|. +.+.|..| ..|..|.-+
T Consensus 12 ~~~~~qiCqiCGD~VG----~~~~Ge~F----VAC~eC~FP 44 (93)
T 1weo_A 12 KNLDGQFCEICGDQIG----LTVEGDLF----VACNECGFP 44 (93)
T ss_dssp SCCSSCBCSSSCCBCC----BCSSSSBC----CSCSSSCCC
T ss_pred cccCCCccccccCccc----cCCCCCEE----EeeeccCCh
Confidence 3345669999999883 44566654 234555433
No 101
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.38 E-value=7.6 Score=25.53 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=9.1
Q ss_pred CCCCCCCccccc
Q psy16551 200 GCPRCGGAVFAA 211 (281)
Q Consensus 200 ~C~~C~~~I~~~ 211 (281)
.|+.|++.|...
T Consensus 59 ~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 59 KCPLCKTSVRKN 70 (73)
T ss_dssp CCSSSCCCCCCC
T ss_pred CCCCCCCcCCcc
Confidence 799999887543
No 102
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=53.12 E-value=14 Score=22.63 Aligned_cols=39 Identities=31% Similarity=0.750 Sum_probs=23.8
Q ss_pred CCCCcCCCccccccc---eeeccCcccccCce--------eccccCCCCC
Q psy16551 95 GKGCPRCGGVVFAAE---QVLAKGSEWHRKCF--------KCRDCNKTLD 133 (281)
Q Consensus 95 ~~~C~~C~~~I~~~~---~~~~~~~~~H~~CF--------~C~~C~~~L~ 133 (281)
...|..|...+...+ .+..-+..||..|+ +|..|+..+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 356888888764321 22345777888875 4666666553
No 103
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.76 E-value=13 Score=24.86 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=9.4
Q ss_pred CCCCCCCccccc
Q psy16551 200 GCPRCGGAVFAA 211 (281)
Q Consensus 200 ~C~~C~~~I~~~ 211 (281)
.|+.|++.+...
T Consensus 61 ~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 61 SCPVCRISYQPE 72 (85)
T ss_dssp CCTTTCCSSCSS
T ss_pred cCCCCCCccCHH
Confidence 899999888543
No 104
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=51.24 E-value=15 Score=26.79 Aligned_cols=32 Identities=22% Similarity=0.597 Sum_probs=16.1
Q ss_pred eeccccCCCCCCCCeeeCCCCcccCccchhhcc
Q psy16551 123 FKCRDCNKTLDSINACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 123 F~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~ 155 (281)
+.|..|...+...... ..=|..||..|..+.+
T Consensus 23 ~~C~IC~~~~~~pv~~-~~CgH~fC~~Ci~~~~ 54 (117)
T 1jm7_B 23 LRCSRCTNILREPVCL-GGCEHIFCSNCVSDCI 54 (117)
T ss_dssp TSCSSSCSCCSSCBCC-CSSSCCBCTTTGGGGT
T ss_pred CCCCCCChHhhCccEe-CCCCCHHHHHHHHHHh
Confidence 5555665555432111 1345667777765544
No 105
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=48.59 E-value=8 Score=28.06 Aligned_cols=30 Identities=37% Similarity=0.835 Sum_probs=20.2
Q ss_pred CCCCCCCcccccceeeecCccccccccccc---ccCCCC
Q psy16551 200 GCPRCGGAVFAAEQQLAKGTMWHKQCFSCN---VCKRPL 235 (281)
Q Consensus 200 ~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~---~C~~~L 235 (281)
.|+.|+.+|..-|.. .+|..| .|. .|.+..
T Consensus 39 ~Cp~C~~~V~rVe~~-~~~~if-----~C~~~~~Ckrty 71 (101)
T 3vk6_A 39 MCPGCSDPVQRIEQC-TRGSLF-----MCSIVQGCKRTY 71 (101)
T ss_dssp BCTTTCCBCSEEEEE-EGGGCC-----CCCCCCCCCCCC
T ss_pred CCcCcCCeeeeeEEe-ccCCEE-----ECCCCCCHHHHh
Confidence 899999999766543 445554 454 576654
No 106
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=47.00 E-value=15 Score=25.06 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=17.4
Q ss_pred eeccccCCCCCCC--CeeeCCCCcccCccchhhcc
Q psy16551 123 FKCRDCNKTLDSI--NACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 123 F~C~~C~~~L~~~--~~~~~~~g~~~C~~cy~~~~ 155 (281)
+.|..|-.++... .+.--.=|..+|..|+.+.+
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~ 46 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIR 46 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHT
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHH
Confidence 5566666655321 11100146678888877654
No 107
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=45.05 E-value=17 Score=24.15 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=16.8
Q ss_pred eeccccCCCCCCCCeeeCCCCcccCccchhhcc
Q psy16551 123 FKCRDCNKTLDSINACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 123 F~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~ 155 (281)
+.|..|...+..... ..=|..||..|..+.+
T Consensus 13 ~~C~IC~~~~~~p~~--l~CgH~fC~~Ci~~~~ 43 (79)
T 2egp_A 13 VTCPICLELLTEPLS--LDCGHSLCRACITVSN 43 (79)
T ss_dssp CEETTTTEECSSCCC--CSSSCCCCHHHHSCCC
T ss_pred CCCcCCCcccCCeeE--CCCCCHHHHHHHHHHH
Confidence 555666555443221 1456667777776544
No 108
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=44.49 E-value=17 Score=25.97 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=19.2
Q ss_pred eeccccCCCCCCCCeeeCCCCcccCccchhhcc
Q psy16551 123 FKCRDCNKTLDSINACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 123 F~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~ 155 (281)
+.|..|...+..... ..=|..||..|..+.+
T Consensus 22 ~~C~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~ 52 (112)
T 1jm7_A 22 LECPICLELIKEPVS--TKCDHIFCKFCMLKLL 52 (112)
T ss_dssp TSCSSSCCCCSSCCB--CTTSCCCCSHHHHHHH
T ss_pred CCCcccChhhcCeEE--CCCCCHHHHHHHHHHH
Confidence 456777665543222 2457778888877655
No 109
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=44.42 E-value=25 Score=21.33 Aligned_cols=9 Identities=44% Similarity=0.958 Sum_probs=6.5
Q ss_pred CCCCCCCcc
Q psy16551 200 GCPRCGGAV 208 (281)
Q Consensus 200 ~C~~C~~~I 208 (281)
.|+.|++.|
T Consensus 45 ~CP~Cr~~~ 53 (55)
T 1iym_A 45 TCPLCRLTV 53 (55)
T ss_dssp SCSSSCCCS
T ss_pred cCcCCCCEe
Confidence 677787765
No 110
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.26 E-value=7.4 Score=25.63 Aligned_cols=12 Identities=17% Similarity=0.476 Sum_probs=8.4
Q ss_pred CCCCCCCccccc
Q psy16551 200 GCPRCGGAVFAA 211 (281)
Q Consensus 200 ~C~~C~~~I~~~ 211 (281)
.|+.|++.|...
T Consensus 51 ~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 51 RCALCRQEIPED 62 (71)
T ss_dssp BCSSSCCBCCHH
T ss_pred cCcCcCchhCHh
Confidence 688888877543
No 111
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=44.22 E-value=21 Score=22.25 Aligned_cols=10 Identities=30% Similarity=0.687 Sum_probs=7.4
Q ss_pred CCCCCCCccc
Q psy16551 200 GCPRCGGAVF 209 (281)
Q Consensus 200 ~C~~C~~~I~ 209 (281)
.|+.|++.+.
T Consensus 39 ~CP~Cr~~~~ 48 (56)
T 1bor_A 39 QCPICQAPWP 48 (56)
T ss_dssp SCSSCCSSSS
T ss_pred CCCcCCcEee
Confidence 6888887764
No 112
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=44.12 E-value=11 Score=24.97 Aligned_cols=31 Identities=19% Similarity=0.492 Sum_probs=17.0
Q ss_pred eeccccCCCCCCCCeeeCC-CCcccCccchhhcc
Q psy16551 123 FKCRDCNKTLDSINACDGP-DKDIYCKTCYGKKW 155 (281)
Q Consensus 123 F~C~~C~~~L~~~~~~~~~-~g~~~C~~cy~~~~ 155 (281)
+.|..|...+..... .. =|..||..|..+.+
T Consensus 16 ~~C~IC~~~~~~p~~--~~~CgH~fC~~Ci~~~~ 47 (74)
T 2yur_A 16 LLCLICKDIMTDAVV--IPCCGNSYCDECIRTAL 47 (74)
T ss_dssp GSCSSSCCCCTTCEE--CSSSCCEECTTHHHHHH
T ss_pred CCCcCCChHHhCCeE--cCCCCCHHHHHHHHHHH
Confidence 455666555543221 13 36777888876554
No 113
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=43.96 E-value=10 Score=26.69 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=16.7
Q ss_pred eeccccCCCCCCCCeeeCCCCcccCccchhhcc
Q psy16551 123 FKCRDCNKTLDSINACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 123 F~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~ 155 (281)
+.|..|...+...... ..=|..||..|..+.+
T Consensus 23 ~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~ 54 (99)
T 2y43_A 23 LRCGICFEYFNIAMII-PQCSHNYCSLCIRKFL 54 (99)
T ss_dssp TBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHH
T ss_pred CCcccCChhhCCcCEE-CCCCCHhhHHHHHHHH
Confidence 4555665555432111 1356667777766544
No 114
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=43.65 E-value=13 Score=27.01 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=17.9
Q ss_pred eeccccCCCCCCCCeeeCCCCcccCccchhhcc
Q psy16551 123 FKCRDCNKTLDSINACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 123 F~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~ 155 (281)
+.|..|...+..... ..=|..||..|..+.+
T Consensus 16 ~~C~iC~~~~~~p~~--~~CgH~fC~~Ci~~~~ 46 (115)
T 3l11_A 16 CQCGICMEILVEPVT--LPCNHTLCKPCFQSTV 46 (115)
T ss_dssp HBCTTTCSBCSSCEE--CTTSCEECHHHHCCCC
T ss_pred CCCccCCcccCceeE--cCCCCHHhHHHHHHHH
Confidence 566666655543221 2456678888876544
No 115
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=43.40 E-value=10 Score=28.68 Aligned_cols=31 Identities=13% Similarity=0.312 Sum_probs=18.5
Q ss_pred eeccccCCCCCCCCeeeCCCCcccCccchhhcc
Q psy16551 123 FKCRDCNKTLDSINACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 123 F~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~ 155 (281)
+.|..|...+..... ..=|..||..|..+.+
T Consensus 54 ~~C~iC~~~~~~~~~--~~CgH~fc~~Ci~~~~ 84 (138)
T 4ayc_A 54 LQCIICSEYFIEAVT--LNCAHSFCSYCINEWM 84 (138)
T ss_dssp SBCTTTCSBCSSEEE--ETTSCEEEHHHHHHHT
T ss_pred CCCcccCcccCCceE--CCCCCCccHHHHHHHH
Confidence 567777666654221 2556778888866543
No 116
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=42.12 E-value=11 Score=24.23 Aligned_cols=33 Identities=12% Similarity=0.317 Sum_probs=18.2
Q ss_pred eeccccCC-CCCCCC--eeeCCCCcccCccchhhcc
Q psy16551 123 FKCRDCNK-TLDSIN--ACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 123 F~C~~C~~-~L~~~~--~~~~~~g~~~C~~cy~~~~ 155 (281)
+.|..|.. .+.... .....=|..||..|..+.+
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~ 39 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLF 39 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHH
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHH
Confidence 45666665 343321 1112567778888877654
No 117
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=41.60 E-value=11 Score=27.53 Aligned_cols=36 Identities=17% Similarity=0.357 Sum_probs=22.0
Q ss_pred ccCCCCCCCCcCCCccccccce-----eec---c---CcccccCcee
Q psy16551 89 KIKAAPGKGCPRCGGVVFAAEQ-----VLA---K---GSEWHRKCFK 124 (281)
Q Consensus 89 ~~~~~~~~~C~~C~~~I~~~~~-----~~~---~---~~~~H~~CF~ 124 (281)
.|.......|..|++.|.-++. +.. . -..||..||.
T Consensus 19 EyAkS~Ra~Ck~C~~kI~KgelRig~~v~~~~~~g~~~~W~H~~Cf~ 65 (106)
T 2dmj_A 19 EYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 65 (106)
T ss_dssp EECCSSCCBCSSSCCBCCTTCEEEEEEEEETTTTEEEEEEEETTHHH
T ss_pred EEeCCCCCcchhhCCccCCCCEEEEEEecCCCCCCCcCEeECcCccc
Confidence 3444555779999999965442 111 1 2467888865
No 118
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=41.44 E-value=8.4 Score=28.42 Aligned_cols=9 Identities=33% Similarity=0.910 Sum_probs=4.3
Q ss_pred CCCCCCCcc
Q psy16551 200 GCPRCGGAV 208 (281)
Q Consensus 200 ~C~~C~~~I 208 (281)
.|+.|...+
T Consensus 9 ~C~IC~~~~ 17 (133)
T 4ap4_A 9 SCPICMDGY 17 (133)
T ss_dssp BCTTTCCBH
T ss_pred CCcccChhh
Confidence 455554443
No 119
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=41.11 E-value=59 Score=21.29 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=18.0
Q ss_pred CCCCCCCCcccccceee--ecCccccccccc
Q psy16551 199 EGCPRCGGAVFAAEQQL--AKGTMWHKQCFS 227 (281)
Q Consensus 199 ~~C~~C~~~I~~~~~v~--~~g~~~H~~Cf~ 227 (281)
..|+.|...+.....+. .=+..||..|+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~ 46 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIV 46 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTH
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHH
Confidence 48999988775544332 345566666653
No 120
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=40.72 E-value=12 Score=24.24 Aligned_cols=41 Identities=20% Similarity=0.479 Sum_probs=28.6
Q ss_pred CCCCCcCCCcccccc----c--eeeccCcccccCce--------eccccCCCCCC
Q psy16551 94 PGKGCPRCGGVVFAA----E--QVLAKGSEWHRKCF--------KCRDCNKTLDS 134 (281)
Q Consensus 94 ~~~~C~~C~~~I~~~----~--~~~~~~~~~H~~CF--------~C~~C~~~L~~ 134 (281)
....|..|...+... + ++..-|..||..|+ +|..|+..+..
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 345699998876432 1 34556778888887 78888887764
No 121
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=40.68 E-value=59 Score=21.63 Aligned_cols=46 Identities=22% Similarity=0.463 Sum_probs=29.5
Q ss_pred CCCCcCCCccccccceeeccC-----cccccCceeccccCCCCCCCCeeeCCCCcccCccchhhc
Q psy16551 95 GKGCPRCGGVVFAAEQVLAKG-----SEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKK 154 (281)
Q Consensus 95 ~~~C~~C~~~I~~~~~~~~~~-----~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~ 154 (281)
...| .|++.- .+++|.-++ ..||..|.. |.. ...++.||..|..++
T Consensus 16 ~~~C-~C~~~~-~g~MI~CD~~~C~~~wfH~~Cvg-------l~~-----~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG-------LTT-----KPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCS-CSSEECCSCSSCSCCCEETTTTT-------CSS-----CCSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCC-CCCEeEeeCCCCCCccEecccCC-------cCc-----CCCCCEECCCCCccc
Confidence 4568 598865 366665554 578988864 322 134788999986543
No 122
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.41 E-value=13 Score=24.57 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=25.6
Q ss_pred CCCCcCCCcccccccee--eccCcccccCcee--------ccccCCCCC
Q psy16551 95 GKGCPRCGGVVFAAEQV--LAKGSEWHRKCFK--------CRDCNKTLD 133 (281)
Q Consensus 95 ~~~C~~C~~~I~~~~~~--~~~~~~~H~~CF~--------C~~C~~~L~ 133 (281)
...|..|...+...+.+ ..-+..||..|+. |..|+..+.
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 45699998887554433 3357778888863 666666554
No 123
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=40.34 E-value=94 Score=21.84 Aligned_cols=47 Identities=21% Similarity=0.449 Sum_probs=29.6
Q ss_pred CCCCCcCCCccccccceeeccC-----cccccCceeccccCCCCCCCCeeeCCCCcccCccchhhc
Q psy16551 94 PGKGCPRCGGVVFAAEQVLAKG-----SEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKK 154 (281)
Q Consensus 94 ~~~~C~~C~~~I~~~~~~~~~~-----~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~ 154 (281)
....| .|++.- .+++|.-++ ..||..|.. |.. ...++.||..|..++
T Consensus 35 e~~yC-iC~~~~-~g~MI~CD~~dC~~~WfH~~CVg-------l~~-----~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG-------LTT-----KPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBC-CSCCCCCSCSSCSCCCCCSTTTT-------CSS-----CCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCC-CCCEeEecCCCCCCCCEecccCC-------cCc-----CCCCCEECcCccCcC
Confidence 34567 888865 356665554 578987753 222 134788999996543
No 124
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.33 E-value=16 Score=23.35 Aligned_cols=40 Identities=20% Similarity=0.473 Sum_probs=26.1
Q ss_pred CCCCCcCCCccccccc------eeeccCcccccCce--------eccccCCCCC
Q psy16551 94 PGKGCPRCGGVVFAAE------QVLAKGSEWHRKCF--------KCRDCNKTLD 133 (281)
Q Consensus 94 ~~~~C~~C~~~I~~~~------~~~~~~~~~H~~CF--------~C~~C~~~L~ 133 (281)
....|..|...+.... ++..-|..||..|+ .|..|+..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 3456999988764321 34456777888886 4777776653
No 125
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=40.17 E-value=13 Score=24.99 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=9.4
Q ss_pred CCCCCCCccccc
Q psy16551 200 GCPRCGGAVFAA 211 (281)
Q Consensus 200 ~C~~C~~~I~~~ 211 (281)
.|+.|++.+...
T Consensus 61 ~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 61 NCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTCCCCCTT
T ss_pred CCCCCCCcCCHH
Confidence 799999888544
No 126
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=38.75 E-value=12 Score=29.16 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=19.6
Q ss_pred ceeccccCCCCCCCCeeeCCCCcccCccchhhcc
Q psy16551 122 CFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 122 CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~ 155 (281)
-+.|..|...+...... ..=|..||..|..+.+
T Consensus 54 ~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~ 86 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTT-KECLHRFCADCIITAL 86 (165)
T ss_dssp HHBCTTTSSBCSSEEEE-TTTCCEEEHHHHHHHH
T ss_pred CCCCcccChHhhCcCEe-CCCCChhHHHHHHHHH
Confidence 35667776665542211 2456778888877654
No 127
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.15 E-value=39 Score=22.99 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=24.5
Q ss_pred CCCCCcCCCccccccceeecc------CcccccCce----------eccccCCCCC
Q psy16551 94 PGKGCPRCGGVVFAAEQVLAK------GSEWHRKCF----------KCRDCNKTLD 133 (281)
Q Consensus 94 ~~~~C~~C~~~I~~~~~~~~~------~~~~H~~CF----------~C~~C~~~L~ 133 (281)
....|..|......++.+... ...||..|+ .|..|+..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 346799998765433444322 278999885 4666665553
No 128
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=36.94 E-value=16 Score=22.94 Aligned_cols=40 Identities=20% Similarity=0.496 Sum_probs=27.3
Q ss_pred CCCcCCCcccccc----c--eeeccCcccccCce--------eccccCCCCCCC
Q psy16551 96 KGCPRCGGVVFAA----E--QVLAKGSEWHRKCF--------KCRDCNKTLDSI 135 (281)
Q Consensus 96 ~~C~~C~~~I~~~----~--~~~~~~~~~H~~CF--------~C~~C~~~L~~~ 135 (281)
..|..|...+... + .+..-|..||..|+ +|..|+..+...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 4588888776432 1 34556788888887 588888877643
No 129
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=36.52 E-value=13 Score=27.54 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=14.7
Q ss_pred ccCCCCCCCCcCCCccccccc
Q psy16551 89 KIKAAPGKGCPRCGGVVFAAE 109 (281)
Q Consensus 89 ~~~~~~~~~C~~C~~~I~~~~ 109 (281)
.|.......|..|++.|.-++
T Consensus 14 EYAKS~RA~Ck~Ck~kI~Kge 34 (114)
T 1v9x_A 14 EYAKSSRSSCKTCKSVINKEN 34 (114)
T ss_dssp EECSCSCCBCSSSCCBCCSSS
T ss_pred EEeCCCCCCchhhCCccCCCC
Confidence 344455577999999996544
No 130
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.41 E-value=21 Score=23.75 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=8.8
Q ss_pred CCCCCCCcccc
Q psy16551 200 GCPRCGGAVFA 210 (281)
Q Consensus 200 ~C~~C~~~I~~ 210 (281)
.|+.|+++|..
T Consensus 58 ~CP~Cr~~i~~ 68 (75)
T 2ecg_A 58 KCPMCYTVITF 68 (75)
T ss_dssp BCTTTCCBCCC
T ss_pred CCccCCceecC
Confidence 79999988843
No 131
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=36.16 E-value=19 Score=25.76 Aligned_cols=34 Identities=9% Similarity=0.002 Sum_probs=24.5
Q ss_pred cCceeccccCCCCCCCCeeeCCCCcccCccchhhcc
Q psy16551 120 RKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 120 ~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~ 155 (281)
++-|.|..|...|.+--. ...|..||..|-.+.+
T Consensus 27 p~~~~CpI~~~~m~dPV~--~~cGhtf~r~~I~~~l 60 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVR--LPSGTIMDRSIILRHL 60 (100)
T ss_dssp STTTBCTTTCSBCSSEEE--ETTTEEEEHHHHHHHT
T ss_pred cHhhCCcCccCcccCCeE--CCCCCEEchHHHHHHH
Confidence 456888999887765332 2588899998876655
No 132
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=36.06 E-value=10 Score=27.01 Aligned_cols=32 Identities=22% Similarity=0.561 Sum_probs=17.7
Q ss_pred eeccccCCCCCCCCeeeCCCCcccCccchhhcc
Q psy16551 123 FKCRDCNKTLDSINACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 123 F~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~ 155 (281)
+.|..|...+...... ..=|..||..|..+.+
T Consensus 23 ~~C~IC~~~~~~p~~~-~~CgH~FC~~Ci~~~~ 54 (100)
T 3lrq_A 23 FRCFICMEKLRDARLC-PHCSKLCCFSCIRRWL 54 (100)
T ss_dssp TBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHH
T ss_pred CCCccCCccccCcccc-CCCCChhhHHHHHHHH
Confidence 5566666655432111 2446678888876544
No 133
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.17 E-value=38 Score=23.02 Aligned_cols=28 Identities=29% Similarity=0.573 Sum_probs=17.8
Q ss_pred CCCCCCCcccccceee--ecCccccccccc
Q psy16551 200 GCPRCGGAVFAAEQQL--AKGTMWHKQCFS 227 (281)
Q Consensus 200 ~C~~C~~~I~~~~~v~--~~g~~~H~~Cf~ 227 (281)
.|..|++.-..++++. .=...||..|+.
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~ 57 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLN 57 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSS
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccC
Confidence 5788887654455554 345678887753
No 134
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=35.04 E-value=6.8 Score=32.21 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=16.9
Q ss_pred eeccccCCCCCCCCeeeCCCCcccCccchhh
Q psy16551 123 FKCRDCNKTLDSINACDGPDKDIYCKTCYGK 153 (281)
Q Consensus 123 F~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~ 153 (281)
..|..|+.......... .+|+.+|..|+.+
T Consensus 173 ~~C~~CGE~~~~~~~~~-~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKL-LNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGGCEE-ETTEEECHHHHHC
T ss_pred eECCCCCCchhhcceee-eCCcEEChhhhcc
Confidence 45666666555433332 5667777777643
No 135
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.80 E-value=30 Score=22.60 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=25.2
Q ss_pred CCCCcCCCccccccceee--ccCcccccCce--------eccccCCCCCC
Q psy16551 95 GKGCPRCGGVVFAAEQVL--AKGSEWHRKCF--------KCRDCNKTLDS 134 (281)
Q Consensus 95 ~~~C~~C~~~I~~~~~~~--~~~~~~H~~CF--------~C~~C~~~L~~ 134 (281)
...|..|...+.....+. .-+..||..|+ +|-.|+..+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 456999988875444332 35667887776 36666665543
No 136
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=33.87 E-value=22 Score=25.30 Aligned_cols=34 Identities=6% Similarity=-0.109 Sum_probs=23.1
Q ss_pred cCceeccccCCCCCCCCeeeCCCC-cccCccchhhcc
Q psy16551 120 RKCFKCRDCNKTLDSINACDGPDK-DIYCKTCYGKKW 155 (281)
Q Consensus 120 ~~CF~C~~C~~~L~~~~~~~~~~g-~~~C~~cy~~~~ 155 (281)
++-|.|..|...|.+--. ...| ..||..|-.+.+
T Consensus 20 p~~~~CpI~~~~m~dPV~--~~cG~htf~r~cI~~~l 54 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVV--LPSSRVTVDRSTIARHL 54 (98)
T ss_dssp CTTTBCTTTCSBCSSEEE--CTTTCCEEEHHHHHHHT
T ss_pred cHhcCCcCccccccCCeE--CCCCCeEECHHHHHHHH
Confidence 346888888877765322 3566 889988876655
No 137
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=33.24 E-value=16 Score=26.14 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=19.8
Q ss_pred ceeccccCCCCCCCCeeeCCCCcccCccchhhcc
Q psy16551 122 CFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 122 CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~ 155 (281)
-+.|..|...+...... ..=|..||..|..+.+
T Consensus 15 ~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~ 47 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTI-IECLHSFCKTCIVRYL 47 (108)
T ss_dssp GTBCTTTSSBCSSEEEE-TTTCCEEEHHHHHHHH
T ss_pred cCCCccCChHHhCcCEe-CCCCChhhHHHHHHHH
Confidence 35677776666542221 2567778888876654
No 138
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=31.73 E-value=12 Score=25.82 Aligned_cols=34 Identities=6% Similarity=-0.006 Sum_probs=23.8
Q ss_pred cCceeccccCCCCCCCCeeeCCCCcccCccchhhcc
Q psy16551 120 RKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 120 ~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~ 155 (281)
++-|.|..|...|.+--. ...|..||..|-.+.+
T Consensus 12 p~~~~CpI~~~~m~dPV~--~~cGhtf~r~~I~~~l 45 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVR--LPSGTVMDRSIILRHL 45 (85)
T ss_dssp CTTTBCTTTCSBCSSEEE--CTTSCEEEHHHHHHHH
T ss_pred chheECcccCchhcCCeE--CCCCCEECHHHHHHHH
Confidence 346888888887765322 3678899988866544
No 139
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=31.67 E-value=14 Score=27.30 Aligned_cols=31 Identities=19% Similarity=0.467 Sum_probs=18.1
Q ss_pred eeccccCCCCCCCCeeeCCCCcccCccchhhcc
Q psy16551 123 FKCRDCNKTLDSINACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 123 F~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~ 155 (281)
+.|..|...+..... ..=|..||..|....+
T Consensus 53 ~~C~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~ 83 (124)
T 3fl2_A 53 FQCICCQELVFRPIT--TVCQHNVCKDCLDRSF 83 (124)
T ss_dssp TBCTTTSSBCSSEEE--CTTSCEEEHHHHHHHH
T ss_pred CCCCcCChHHcCcEE--eeCCCcccHHHHHHHH
Confidence 566677665553211 2456677887776544
No 140
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=31.36 E-value=25 Score=29.44 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=17.7
Q ss_pred CCCCCCCCCcccccceeeecCcccccccc
Q psy16551 198 GEGCPRCGGAVFAAEQQLAKGTMWHKQCF 226 (281)
Q Consensus 198 ~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf 226 (281)
...|..|+..|..+..=.--+..||..|+
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~ 208 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCV 208 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHH
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHH
Confidence 34899999988654211113455676665
No 141
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.23 E-value=25 Score=23.69 Aligned_cols=11 Identities=27% Similarity=0.634 Sum_probs=8.6
Q ss_pred CCCCCCCcccc
Q psy16551 200 GCPRCGGAVFA 210 (281)
Q Consensus 200 ~C~~C~~~I~~ 210 (281)
.|+.|++.+..
T Consensus 58 ~CP~Cr~~~~~ 68 (88)
T 2ct2_A 58 RCPFCSKITRI 68 (88)
T ss_dssp CCTTTCCCBCC
T ss_pred CCCCCCCcccc
Confidence 78999887754
No 142
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=29.43 E-value=52 Score=20.96 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=16.9
Q ss_pred CCCCCCCCcccccceee--ecCcccccccc
Q psy16551 199 EGCPRCGGAVFAAEQQL--AKGTMWHKQCF 226 (281)
Q Consensus 199 ~~C~~C~~~I~~~~~v~--~~g~~~H~~Cf 226 (281)
..|+.|...+..++.+. .=+..||..|+
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci 44 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCV 44 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHH
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHH
Confidence 37999988775443222 34555666665
No 143
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.12 E-value=21 Score=24.19 Aligned_cols=20 Identities=20% Similarity=0.577 Sum_probs=14.4
Q ss_pred cCcccccCcee--------ccccCCCCC
Q psy16551 114 KGSEWHRKCFK--------CRDCNKTLD 133 (281)
Q Consensus 114 ~~~~~H~~CF~--------C~~C~~~L~ 133 (281)
-+..||..|+. |-.|+..+.
T Consensus 48 C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 48 CNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp TSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 67789988864 777776654
No 144
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=28.98 E-value=16 Score=27.17 Aligned_cols=21 Identities=10% Similarity=0.330 Sum_probs=14.4
Q ss_pred ccCCCCCCCCcCCCccccccc
Q psy16551 89 KIKAAPGKGCPRCGGVVFAAE 109 (281)
Q Consensus 89 ~~~~~~~~~C~~C~~~I~~~~ 109 (281)
.|.......|..|++.|.-++
T Consensus 32 EyAkS~RA~Ck~C~~kI~Kge 52 (116)
T 3od8_A 32 EYAKSGRASCKKCSESIPKDS 52 (116)
T ss_dssp EECSSSCCBCTTTCCBCCTTS
T ss_pred EEeccCCccCcccCCccCCCC
Confidence 344445577999999996544
No 145
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=28.68 E-value=12 Score=27.50 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=18.1
Q ss_pred eeccccCCCCCCCCeeeCCCCcccCccchhhcc
Q psy16551 123 FKCRDCNKTLDSINACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 123 F~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~ 155 (281)
+.|..|...+.... . ..=|..||..|..+.+
T Consensus 19 ~~C~IC~~~~~~p~-~-~~CgH~fC~~Ci~~~~ 49 (118)
T 3hct_A 19 YECPICLMALREAV-Q-TPCGHRFCKACIIKSI 49 (118)
T ss_dssp GBCTTTCSBCSSEE-E-CTTSCEEEHHHHHHHH
T ss_pred CCCCcCChhhcCeE-E-CCcCChhhHHHHHHHH
Confidence 56666666554321 1 2456778888876544
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=28.53 E-value=22 Score=29.82 Aligned_cols=34 Identities=6% Similarity=-0.047 Sum_probs=25.2
Q ss_pred cCceeccccCCCCCCCCeeeCCCCcccCccchhhcc
Q psy16551 120 RKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 120 ~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~ 155 (281)
+.-|.|..|...+.+--. ...|..||..|-.+.+
T Consensus 206 ~~~~~c~i~~~~~~dPv~--~~~gh~f~~~~i~~~~ 239 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCI--TPSGITYDRKDIEEHL 239 (281)
T ss_dssp CSTTBCTTTCSBCSSEEE--CSSCCEEETTHHHHHH
T ss_pred CcccCCcCcCCHhcCCeE--CCCCCEECHHHHHHHH
Confidence 467889999888765322 3689999999977654
No 147
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=27.59 E-value=17 Score=27.00 Aligned_cols=20 Identities=15% Similarity=0.406 Sum_probs=13.7
Q ss_pred cCCCCCCCCcCCCccccccc
Q psy16551 90 IKAAPGKGCPRCGGVVFAAE 109 (281)
Q Consensus 90 ~~~~~~~~C~~C~~~I~~~~ 109 (281)
|...+...|..|++.|.-++
T Consensus 10 YAkSgRA~Ck~C~~kI~Kge 29 (117)
T 1uw0_A 10 YAKRGTAGCKKCKEKIVKGV 29 (117)
T ss_dssp ECCSSCEECTTSSCEECTTC
T ss_pred EeCCCCccchhhCcccCCCC
Confidence 33444567999999986544
No 148
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=27.23 E-value=36 Score=23.24 Aligned_cols=32 Identities=19% Similarity=0.445 Sum_probs=20.3
Q ss_pred ceeccccCCCCCCCCeeeCC-CCcccCccchhhcc
Q psy16551 122 CFKCRDCNKTLDSINACDGP-DKDIYCKTCYGKKW 155 (281)
Q Consensus 122 CF~C~~C~~~L~~~~~~~~~-~g~~~C~~cy~~~~ 155 (281)
-|.|..|...+..-. . .. =|..||..|..+.+
T Consensus 13 ~~~C~IC~~~~~~p~-~-~~~CgH~fC~~Ci~~~~ 45 (92)
T 3ztg_A 13 ELLCLICKDIMTDAV-V-IPCCGNSYCDECIRTAL 45 (92)
T ss_dssp TTEETTTTEECSSCE-E-CTTTCCEECHHHHHHHH
T ss_pred CCCCCCCChhhcCce-E-CCCCCCHHHHHHHHHHH
Confidence 367777776665422 2 24 37888888876654
No 149
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=26.98 E-value=19 Score=26.57 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=13.8
Q ss_pred cCCCCCCCCcCCCccccccc
Q psy16551 90 IKAAPGKGCPRCGGVVFAAE 109 (281)
Q Consensus 90 ~~~~~~~~C~~C~~~I~~~~ 109 (281)
|.......|..|++.|.-++
T Consensus 14 yAkS~Ra~Ck~C~~kI~Kg~ 33 (111)
T 3odc_A 14 YAKSNRSTCKGCMEKIEKGQ 33 (111)
T ss_dssp ECSSSCCBCTTTCCBCCTTC
T ss_pred EeecCCccccccCCCccCCc
Confidence 34444567999999996544
No 150
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=26.49 E-value=17 Score=26.42 Aligned_cols=31 Identities=19% Similarity=0.527 Sum_probs=19.7
Q ss_pred eeccccCCCCCCCCeeeCCCCcccCccchhhcc
Q psy16551 123 FKCRDCNKTLDSINACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 123 F~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~ 155 (281)
+.|..|...+..... ..=|..||..|..+.+
T Consensus 24 ~~C~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~ 54 (116)
T 1rmd_A 24 ISCQICEHILADPVE--TSCKHLFCRICILRCL 54 (116)
T ss_dssp TBCTTTCSBCSSEEE--CTTSCEEEHHHHHHHH
T ss_pred CCCCCCCcHhcCcEE--cCCCCcccHHHHHHHH
Confidence 667777766654222 2567788888876644
No 151
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.29 E-value=25 Score=22.73 Aligned_cols=37 Identities=19% Similarity=0.439 Sum_probs=24.3
Q ss_pred CCCCcCCCccccccceeeccCcccccCcee--------ccccCCCCC
Q psy16551 95 GKGCPRCGGVVFAAEQVLAKGSEWHRKCFK--------CRDCNKTLD 133 (281)
Q Consensus 95 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~--------C~~C~~~L~ 133 (281)
...|..|...+.. ++..-+..||..|+. |..|+..+.
T Consensus 15 ~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 15 EEECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 4569999887644 555566667777753 666666554
No 152
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=26.08 E-value=13 Score=23.42 Aligned_cols=33 Identities=21% Similarity=0.680 Sum_probs=21.9
Q ss_pred CCCCCCCcccccceeeecCccccc--ccccccccCCCCC
Q psy16551 200 GCPRCGGAVFAAEQQLAKGTMWHK--QCFSCNVCKRPLD 236 (281)
Q Consensus 200 ~C~~C~~~I~~~~~v~~~g~~~H~--~Cf~C~~C~~~L~ 236 (281)
.|..|++.+.....+. ..|. .-|.|..|++.+.
T Consensus 16 ~C~~C~k~F~~~~~l~----~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 16 KCPVCSSTFTDLEANQ----LFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp ECSSSCCEEEHHHHHH----HEETTTTEEBCSSSCCBCE
T ss_pred cCCCCCchhccHHHhH----hhcCCCCCEECCCCCCccc
Confidence 8999998764333221 3443 3588999998874
No 153
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=26.01 E-value=14 Score=28.91 Aligned_cols=31 Identities=26% Similarity=0.537 Sum_probs=15.9
Q ss_pred eeccccCCCCCCCCeeeCCCCcccCccchhhcc
Q psy16551 123 FKCRDCNKTLDSINACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 123 F~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~ 155 (281)
|.|..|...|..... ..-|..||..|..+.+
T Consensus 19 ~~C~IC~~~~~~pv~--~~CgH~fC~~Ci~~~~ 49 (170)
T 3hcs_A 19 YECPICLMALREAVQ--TPCGHRFCKACIIKSI 49 (170)
T ss_dssp GBCTTTCSBCSSEEE--CTTSCEEEHHHHHHHH
T ss_pred CCCCCCChhhcCcEE--CCCCCHHHHHHHHHHH
Confidence 455566555543211 2455666666665543
No 154
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=25.89 E-value=35 Score=22.54 Aligned_cols=10 Identities=30% Similarity=0.790 Sum_probs=8.3
Q ss_pred CCCCCCCccc
Q psy16551 200 GCPRCGGAVF 209 (281)
Q Consensus 200 ~C~~C~~~I~ 209 (281)
.|+.|++.|.
T Consensus 57 ~CP~Cr~~i~ 66 (74)
T 4ic3_A 57 KCPMCYTVIT 66 (74)
T ss_dssp BCTTTCCBCS
T ss_pred cCCCcCcCcc
Confidence 7899988884
No 155
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=25.42 E-value=8.1 Score=24.82 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=23.1
Q ss_pred CCCCCCCcccccceeeecCccccc--ccccccccCCCCCC
Q psy16551 200 GCPRCGGAVFAAEQQLAKGTMWHK--QCFSCNVCKRPLDS 237 (281)
Q Consensus 200 ~C~~C~~~I~~~~~v~~~g~~~H~--~Cf~C~~C~~~L~~ 237 (281)
.|..|++.......+. .-...|. .-|.|..|++.+..
T Consensus 6 ~C~~C~k~F~~~~~L~-~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 6 FCNFCGKTYRDASGLS-RHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp ECTTTCCEESSHHHHH-HHHHHHHTCCCEECTTTCCEESS
T ss_pred cCCCCCCEeCCHHHHH-HHHHHhCCCcCeECCCCCCCcCC
Confidence 8999999875443222 1112343 25889999998754
No 156
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=25.38 E-value=20 Score=27.59 Aligned_cols=31 Identities=19% Similarity=0.420 Sum_probs=20.0
Q ss_pred eeccccCCCCCCCCeeeCCCCcccCccchhhcc
Q psy16551 123 FKCRDCNKTLDSINACDGPDKDIYCKTCYGKKW 155 (281)
Q Consensus 123 F~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~~ 155 (281)
+.|..|...+..... ..=|..||..|..+.+
T Consensus 79 ~~C~IC~~~~~~pv~--~~CgH~fC~~Ci~~~~ 109 (150)
T 1z6u_A 79 FMCVCCQELVYQPVT--TECFHNVCKDCLQRSF 109 (150)
T ss_dssp TBCTTTSSBCSSEEE--CTTSCEEEHHHHHHHH
T ss_pred CEeecCChhhcCCEE--cCCCCchhHHHHHHHH
Confidence 677788776654222 2567778888876654
No 157
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=23.88 E-value=26 Score=23.04 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=18.5
Q ss_pred CCCCcCCCccccccc-eeecc---CcccccCc
Q psy16551 95 GKGCPRCGGVVFAAE-QVLAK---GSEWHRKC 122 (281)
Q Consensus 95 ~~~C~~C~~~I~~~~-~~~~~---~~~~H~~C 122 (281)
...|..|++++.+.+ .|.-+ ...||..|
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhc
Confidence 456999999986543 34444 67788766
No 158
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=23.39 E-value=41 Score=21.57 Aligned_cols=44 Identities=23% Similarity=0.495 Sum_probs=27.2
Q ss_pred CCCcCCCccccccceeeccC-----cccccCceeccccCCCCCCCCeeeCCCCcccCccchhh
Q psy16551 96 KGCPRCGGVVFAAEQVLAKG-----SEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGK 153 (281)
Q Consensus 96 ~~C~~C~~~I~~~~~~~~~~-----~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~ 153 (281)
..| .|+++- .+++|.-.+ ..||..|.. |.. ...|+.||..|..+
T Consensus 11 ~~C-~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvg-------l~~-----~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 11 TYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG-------LTT-----KPRGKWFCPRCSQE 59 (60)
T ss_dssp EET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT-------CSS-----CCSSCCCCHHHHC-
T ss_pred CEE-ECCCcC-CCCEEEeCCCCCCCceEehhcCC-------CCc-----CCCCCEECcCccCc
Confidence 456 688764 466665544 578988764 322 13477899888643
No 159
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.32 E-value=65 Score=20.91 Aligned_cols=11 Identities=18% Similarity=0.721 Sum_probs=7.7
Q ss_pred cccChhhhccc
Q psy16551 247 EIYCKACYGKN 257 (281)
Q Consensus 247 ~~~C~~c~~~~ 257 (281)
--+|..||.+.
T Consensus 35 ~DLC~~C~~~g 45 (63)
T 2e5r_A 35 YQLCQDCFWRG 45 (63)
T ss_dssp CEECHHHHHHC
T ss_pred chhHHHHHhCC
Confidence 44688888764
No 160
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=23.27 E-value=35 Score=21.85 Aligned_cols=44 Identities=23% Similarity=0.519 Sum_probs=27.7
Q ss_pred CCCcCCCccccccceeeccC-----cccccCceeccccCCCCCCCCeeeCCCCcccCccchhh
Q psy16551 96 KGCPRCGGVVFAAEQVLAKG-----SEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGK 153 (281)
Q Consensus 96 ~~C~~C~~~I~~~~~~~~~~-----~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~ 153 (281)
..| .|+++- .+++|.-++ ..||..|.. |.. ...++.||..|..+
T Consensus 10 ~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg-------l~~-----~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 10 TYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD-------LTT-----KPKGKWFCPRCVQE 58 (59)
T ss_dssp EET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT-------CSS-----CCSSCCCCHHHHCC
T ss_pred cEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC-------ccc-----CCCCCEECcCccCc
Confidence 456 788864 466665554 578987754 322 13467889888643
No 161
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.54 E-value=67 Score=20.87 Aligned_cols=11 Identities=36% Similarity=0.739 Sum_probs=8.6
Q ss_pred CCCCCCCcccc
Q psy16551 200 GCPRCGGAVFA 210 (281)
Q Consensus 200 ~C~~C~~~I~~ 210 (281)
.|+.|++.|..
T Consensus 48 ~CP~CR~~i~~ 58 (68)
T 2ea5_A 48 QCPMCRQFVQE 58 (68)
T ss_dssp SCTTTCCCCCC
T ss_pred CCCCCCcchhc
Confidence 78888888843
No 162
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.35 E-value=36 Score=25.89 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=14.7
Q ss_pred ccCCCCCCCCcCCCccccccc
Q psy16551 89 KIKAAPGKGCPRCGGVVFAAE 109 (281)
Q Consensus 89 ~~~~~~~~~C~~C~~~I~~~~ 109 (281)
.|.......|..|++.|.-++
T Consensus 21 EYAKSgRA~CK~C~~kI~Kge 41 (134)
T 2cs2_A 21 EYAKSNRSTCKGCMEKIEKGQ 41 (134)
T ss_dssp EECSSSCCBCSSSCCBCCTTS
T ss_pred EEeCCCCccchhcCCcccCCC
Confidence 444555577999999986544
No 163
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=21.47 E-value=42 Score=21.74 Aligned_cols=44 Identities=27% Similarity=0.577 Sum_probs=28.0
Q ss_pred CCCcCCCccccccceeeccC-----cccccCceeccccCCCCCCCCeeeCCCCcccCccchhh
Q psy16551 96 KGCPRCGGVVFAAEQVLAKG-----SEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGK 153 (281)
Q Consensus 96 ~~C~~C~~~I~~~~~~~~~~-----~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~ 153 (281)
..| .|+++- .+++|.-++ ..||..|.. |.. ...++.||..|..+
T Consensus 12 ~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg-------l~~-----~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 12 TYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS-------LTY-----KPKGKWYCPKCRGD 60 (62)
T ss_dssp EET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT-------CSS-----CCSSCCCCHHHHTC
T ss_pred cEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC-------cCc-----CCCCCEECcCcccC
Confidence 457 788864 456665544 788987754 222 13478899888643
No 164
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=20.99 E-value=47 Score=22.99 Aligned_cols=39 Identities=23% Similarity=0.594 Sum_probs=22.1
Q ss_pred CCCcCCCccccccceeeccCcccccCceeccccCCCCCCCCeeeCCCCcccCccchhhc
Q psy16551 96 KGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKK 154 (281)
Q Consensus 96 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~~C~~cy~~~ 154 (281)
..|..|+.+|.. .++ -+.|..|++.+.. ..+|.+|-..+
T Consensus 3 ~~CP~C~~~l~~------~~~-----~~~C~~C~~~~~~---------~afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALER------NGD-----TAHCETCAKDFSL---------QALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEE------CSS-----EEECTTTCCEEEE---------EEECSSSCSCC
T ss_pred CCCCCCCCcccc------CCC-----ceECccccccCCC---------cccCcchhhHH
Confidence 468888887642 233 2447777764322 22677776543
No 165
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.58 E-value=26 Score=21.05 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=20.5
Q ss_pred CCCCCCCcccccceeeecCccccc--ccccccccCCCCC
Q psy16551 200 GCPRCGGAVFAAEQQLAKGTMWHK--QCFSCNVCKRPLD 236 (281)
Q Consensus 200 ~C~~C~~~I~~~~~v~~~g~~~H~--~Cf~C~~C~~~L~ 236 (281)
.|..|++.......+..--+..|. .=|.|..|++.+.
T Consensus 14 ~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 14 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp ECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred ECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 799999876443322110011232 2478888888764
No 166
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.27 E-value=58 Score=21.61 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=25.8
Q ss_pred CCCCcCCCccccccceeeccCcccccCce--------eccccCCCCC
Q psy16551 95 GKGCPRCGGVVFAAEQVLAKGSEWHRKCF--------KCRDCNKTLD 133 (281)
Q Consensus 95 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF--------~C~~C~~~L~ 133 (281)
...|..|...+.. .++..-|..||..|+ .|..|+..+.
T Consensus 15 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQN-PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcC-eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3569999887643 344556777887775 4777777664
Done!