RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16551
(281 letters)
>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 65
Score = 75.3 bits (185), Expect = 2e-18
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 125 CRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPHGYGFAAGSGFLQTD-----GLTEDEI 179
C C K LDS D +IYCK+CYGKK+GP G G G+G L TD G+ +E
Sbjct: 2 CMVCKKNLDSTTVAVHGD-EIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEG 60
Query: 180 SANRP 184
++RP
Sbjct: 61 QSHRP 65
Score = 64.1 bits (156), Expect = 3e-14
Identities = 25/47 (53%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 228 CNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFGYGHSPTLVST 274
C VCK+ LDS D EIYCK+CYGK +GPKG G G +ST
Sbjct: 2 CMVCKKNLDSTTVAVHGD-EIYCKSCYGKKYGPKGKGKGMGAGTLST 47
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 67.4 bits (165), Expect = 1e-15
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 124 KCRDCNKTLDSINACDGPDKDIYCKTCYGKKWGPHGYGFAAGSGFL 169
+C C K+L+S D D +IYCK CY K +GP G+GF G+G L
Sbjct: 1 RCAKCGKSLESTTLAD-KDGEIYCKGCYAKNFGPKGFGFGQGAGAL 45
Score = 60.5 bits (147), Expect = 3e-13
Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 228 CNVCKRPLDSVLACDGPDKEIYCKACYGKNFGPKGFGYG 266
C C + L+S D D EIYCK CY KNFGPKGFG+G
Sbjct: 2 CAKCGKSLESTTLAD-KDGEIYCKGCYAKNFGPKGFGFG 39
>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 43
Score = 48.7 bits (116), Expect = 6e-09
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 187 NPNTTSIMARKGEGCPRCGGAVFAAEQQLAKGTMWHKQCF 226
N + + +GCPRCG AV+AAE+ + G WHK CF
Sbjct: 4 NASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCF 43
Score = 44.1 bits (104), Expect = 2e-07
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 91 KAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCF 123
K GCPRCG V+AAE+V+ G WH+ CF
Sbjct: 11 KVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCF 43
>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP,
CRIP {Rat (Rattus rattus) [TaxId: 10117]}
Length = 48
Score = 47.4 bits (113), Expect = 2e-08
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 124 KCRDCNKTLDSINACDGPDKDIYC-KTCYGKKWGPHGYGFAA 164
KC C KTL S + + YC CY +GP G+G
Sbjct: 1 KCEKCGKTLTSGGHAEH-EGKPYCNHPCYSAMFGPKGFGRGG 41
Score = 46.3 bits (110), Expect = 5e-08
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 228 CNVCKRPLDSVLACDGPDKEIYC-KACYGKNFGPKGFGYG 266
C C + L S + + + YC CY FGPKGFG G
Sbjct: 2 CEKCGKTLTSGGHAEH-EGKPYCNHPCYSAMFGPKGFGRG 40
>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein,
CRP, CRIP {Japanese quail (Coturnix coturnix japonica),
CRP2 [TaxId: 93934]}
Length = 28
Score = 39.9 bits (93), Expect = 7e-06
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 98 CPRCGGVVFAAEQVLAKGSEWHRKC 122
C RCG V+AAE+V+ G WH+ C
Sbjct: 4 CSRCGDSVYAAEKVIGAGKPWHKNC 28
Score = 39.5 bits (92), Expect = 9e-06
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 199 EGCPRCGGAVFAAEQQLAKGTMWHKQC 225
E C RCG +V+AAE+ + G WHK C
Sbjct: 2 EKCSRCGDSVYAAEKVIGAGKPWHKNC 28
>d1a7ia2 g.39.1.3 (A:36-67) Cysteine-rich (intestinal) protein, CRP,
CRIP {Japanese quail (Coturnix coturnix japonica), CRP2
[TaxId: 93934]}
Length = 32
Score = 37.6 bits (87), Expect = 5e-05
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 228 CNVCKRPLDSVLACDGPDKEIYCKACYGKNFG 259
C VC++ LDS D E+YCK+CYGK +G
Sbjct: 2 CMVCRKNLDSTTVAIH-DAEVYCKSCYGKKYG 32
Score = 36.4 bits (84), Expect = 1e-04
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 125 CRDCNKTLDSINACDGPDKDIYCKTCYGKKWG 156
C C K LDS D ++YCK+CYGKK+G
Sbjct: 2 CMVCRKNLDSTTVAIH-DAEVYCKSCYGKKYG 32
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP,
CRIP {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 37.5 bits (87), Expect = 5e-05
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 98 CPRCGGVVFAAEQVLAKGSEWHRKC 122
CP+C V+ AE+V + G +WH+ C
Sbjct: 5 CPKCDKTVYFAEKVSSLGKDWHKFC 29
Score = 34.8 bits (80), Expect = 4e-04
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 201 CPRCGGAVFAAEQQLAKGTMWHKQC 225
CP+C V+ AE+ + G WHK C
Sbjct: 5 CPKCDKTVYFAEKVSSLGKDWHKFC 29
>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 35
Score = 37.4 bits (87), Expect = 5e-05
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 89 KIKAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCF 123
K +A + C C V+ E++LA +H CF
Sbjct: 1 KFQAPARETCVECQKTVYPMERLLANQQVFHISCF 35
Score = 34.3 bits (79), Expect = 7e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 197 KGEGCPRCGGAVFAAEQQLAKGTMWHKQCF 226
E C C V+ E+ LA ++H CF
Sbjct: 6 ARETCVECQKTVYPMERLLANQQVFHISCF 35
>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein,
CRP, CRIP {Japanese quail (Coturnix coturnix japonica),
CRP2 [TaxId: 93934]}
Length = 31
Score = 33.1 bits (75), Expect = 0.002
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 226 FSCNVCKRPLDSVLACDGPDKEIYCKACYGKN 257
F C C + L+S + + EIYCK CY KN
Sbjct: 1 FRCAKCGKSLESTTLTE-KEGEIYCKGCYAKN 31
Score = 32.7 bits (74), Expect = 0.002
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 123 FKCRDCNKTLDSINACDGPDKDIYCKTCYGK 153
F+C C K+L+S + + +IYCK CY K
Sbjct: 1 FRCAKCGKSLESTTLTE-KEGEIYCKGCYAK 30
>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin
homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 36
Score = 32.4 bits (74), Expect = 0.003
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 198 GEGCPRCGGAVFAAEQQLAKGTMWHKQCF 226
G+ C CG ++ E+ G +H+ CF
Sbjct: 8 GDLCALCGEHLYVLERLCVNGHFFHRSCF 36
Score = 32.1 bits (73), Expect = 0.004
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 91 KAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCF 123
+A G C CG ++ E++ G +HR CF
Sbjct: 4 EAGAGDLCALCGEHLYVLERLCVNGHFFHRSCF 36
>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein, CRP,
CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 35
Score = 31.4 bits (71), Expect = 0.008
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 95 GKGCPRCGGVVFAAEQVLAKGSEWHRKCF 123
GK C C V+ AE+V +GS +H+ CF
Sbjct: 7 GKKCGVCQKAVYFAEEVQCEGSSFHKSCF 35
Score = 28.7 bits (64), Expect = 0.074
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 198 GEGCPRCGGAVFAAEQQLAKGTMWHKQCF 226
G+ C C AV+ AE+ +G+ +HK CF
Sbjct: 7 GKKCGVCQKAVYFAEEVQCEGSSFHKSCF 35
>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 30
Score = 29.1 bits (65), Expect = 0.049
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 96 KGCPRCGGVVFAAEQVLAKGSEWHRKCF 123
C RCG +V+ E+V WH+ CF
Sbjct: 3 PNCARCGKIVYPTEKVNCLDKFWHKACF 30
Score = 28.7 bits (64), Expect = 0.069
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 201 CPRCGGAVFAAEQQLAKGTMWHKQCF 226
C RCG V+ E+ WHK CF
Sbjct: 5 CARCGKIVYPTEKVNCLDKFWHKACF 30
>d1vlia1 b.85.1.1 (A:297-368) Spore coat polysaccharide
biosynthesis protein SpsE, C-terminal domain {Bacillus
subtilis [TaxId: 1423]}
Length = 72
Score = 28.9 bits (65), Expect = 0.11
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 32 IYRNSPRSVV--KDLRSGDRVSRVNIRKKRP 60
I + R + ++ G+ S NI RP
Sbjct: 2 IRNFAYRGIFTTAPIQKGEAFSEDNIAVLRP 32
>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 28.1 bits (63), Expect = 0.14
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 228 CNVCKRPL--DSVLACDGPDKEIYCKACYGKNFGPKG 262
C+ C L + + G IYCK + + F KG
Sbjct: 2 CSYCNNKLSLGTYASLHG---RIYCKPHFNQLFKSKG 35
Score = 27.7 bits (62), Expect = 0.17
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 124 KCRDCNKTL--DSINACDGPDKDIYCKTCYGKKWGPHG 159
+C CN L + + G IYCK + + + G
Sbjct: 1 RCSYCNNKLSLGTYASLHG---RIYCKPHFNQLFKSKG 35
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 27.4 bits (61), Expect = 0.21
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 227 SCNVCKRPLDSVLACDGPDKEIYCKACYGKNF 258
+C VC R LD + +I+C + + F
Sbjct: 1 TCVVCHRGLDGIPFTVDATSQIHCIEDFHRKF 32
>d2zdra1 b.85.1.1 (A:282-349) Capsule biosynthesis protein SiaC,
C-terminal domain {Neisseria meningitidis [TaxId: 487]}
Length = 68
Score = 28.1 bits (63), Expect = 0.23
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 38 RSVV--KDLRSGDRVSRVNIRKKRPPDEGVISLIYIF 72
SVV KD++ G+ +S N+ KRP + G S+
Sbjct: 10 ASVVADKDIKKGELLSGDNLWVKRPGN-GDFSVNEYE 45
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 27.6 bits (61), Expect = 0.31
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 194 MARKGEGCPRCGGAVFAAEQQLAKGTMWHKQCF--------SCNVCKRPLDSVLACDGPD 245
MA E CP C L + C +C +CK P++SV+ D
Sbjct: 1 MATVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIESD 60
Query: 246 KEI 248
E
Sbjct: 61 SEF 63
>d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma
acidophilum [TaxId: 2303]}
Length = 55
Score = 26.7 bits (59), Expect = 0.52
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 9/36 (25%)
Query: 196 RKGEGCPRCGGAVFAAEQQLAKGTMWHKQCFSCNVC 231
RK CPRCG VF AE H +SC C
Sbjct: 16 RKHRFCPRCGPGVFLAE---------HADRYSCGRC 42
Score = 23.6 bits (51), Expect = 7.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 96 KGCPRCGGVVFAAE 109
+ CPRCG VF AE
Sbjct: 19 RFCPRCGPGVFLAE 32
>d2d8va1 g.43.1.1 (A:8-61) Zinc finger FYVE domain-containing
protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 54
Score = 26.8 bits (59), Expect = 0.53
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 228 CNVCKRPLDSVLACDGPDKEIYCKACY 254
C +C D+ L C G D ++YC C+
Sbjct: 4 CCICNE--DATLRCAGCDGDLYCARCF 28
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 26.3 bits (58), Expect = 0.57
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 201 CPRCGGAVFAAEQQL-AKGTMWHKQCF 226
C C A+ A +Q + KGT+WHK CF
Sbjct: 11 CKGCFKAIVAGDQNVEYKGTVWHKDCF 37
Score = 25.9 bits (57), Expect = 0.62
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 98 CPRCGGVVFAAEQVL-AKGSEWHRKCF 123
C C + A +Q + KG+ WH+ CF
Sbjct: 11 CKGCFKAIVAGDQNVEYKGTVWHKDCF 37
>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein, CRP,
CRIP {Japanese quail (Coturnix coturnix japonica), CRP2
[TaxId: 93934]}
Length = 28
Score = 25.7 bits (56), Expect = 0.75
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 98 CPRCGGVVFAAEQVLAKGSEWHRKCF 123
C CG V+ AE+V G +HR CF
Sbjct: 3 CGACGRTVYHAEEVQCDGRSFHRCCF 28
Score = 23.4 bits (50), Expect = 4.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 201 CPRCGGAVFAAEQQLAKGTMWHKQCF 226
C CG V+ AE+ G +H+ CF
Sbjct: 3 CGACGRTVYHAEEVQCDGRSFHRCCF 28
>d1os6a_ a.138.1.1 (A:) Cytochrome c7 (cytochrome c551.5, PpcA)
{Geobacter sulfurreducens, PpcA [TaxId: 35554]}
Length = 71
Score = 26.5 bits (58), Expect = 1.1
Identities = 6/34 (17%), Positives = 9/34 (26%)
Query: 195 ARKGEGCPRCGGAVFAAEQQLAKGTMWHKQCFSC 228
+ C +C + K K C C
Sbjct: 21 QKAVPDCKKCHEKGPGKIEGFGKEMAHGKGCKGC 54
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 24.7 bits (54), Expect = 1.6
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 226 FSCNVCKRPL--DSVLACDGPDKEIYCKACYGKNFGP 260
F C C + +G YC+ + F P
Sbjct: 1 FVCAQCFQQFPEGLFYEFEG---RKYCEHDFQMLFAP 34
>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 24.5 bits (53), Expect = 2.2
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 201 CPRCGGAVFAAEQQL-AKGTMWHKQC 225
C RC G AE+ + + G ++H+QC
Sbjct: 10 CERCKGGFAPAEKIVNSNGELYHEQC 35
>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 24.0 bits (52), Expect = 3.3
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 228 CNVCKRPLDSVLACDGPDKEIYCKACYGKNF 258
C+ C++P+ + + D + +C CY K
Sbjct: 2 CHRCQQPIGTK-SFIPKDNQNFCVPCYEKQH 31
>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 23.6 bits (51), Expect = 3.9
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 228 CNVCKRPLDSVLACDGPDKEIYCKACYGKNF 258
C+ C++PL S + YC CY F
Sbjct: 2 CSGCEQPLGS-RSFVPDKGAHYCVPCYENKF 31
>d1opsa_ b.85.1.1 (A:) Type III antifreeze protein, AFP III {Ocean
pout (Macrozoarces americanus), different isoforms
[TaxId: 8199]}
Length = 64
Score = 24.3 bits (53), Expect = 4.3
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 38 RSVV--KDLRSGDRVSRVNIRKKRPPDEGV 65
+SVV + + ++ + K G+
Sbjct: 2 QSVVATQLIPMNTALTPAMMEGKVTNPIGI 31
>d1q8ra_ d.79.6.1 (A:) Holliday junction resolvase RusA
{Escherichia coli [TaxId: 562]}
Length = 118
Score = 24.9 bits (54), Expect = 6.0
Identities = 7/67 (10%), Positives = 14/67 (20%), Gaps = 4/67 (5%)
Query: 18 SVRFILGLKPSGNVIYRNSPRSVVKDLRSGD--RVSRVNIRKKRP--PDEGVISLIYIFF 73
+ L PS N YR++ I+ + +
Sbjct: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECH 62
Query: 74 CRENNAP 80
+
Sbjct: 63 MPDRRRR 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.446
Gapped
Lambda K H
0.267 0.0426 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,099,568
Number of extensions: 54506
Number of successful extensions: 297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 72
Length of query: 281
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,254,276
Effective search space: 247092372
Effective search space used: 247092372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)