BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16556
(100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf
Whitefly
Length = 352
Score = 138 bits (348), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 79/88 (89%)
Query: 1 MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
+ FCATPP GNL+++Y HAADFC+KLPD+++LEEGALLEPL+VGVHAC+R+GV LGT+V
Sbjct: 113 LTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGVHACRRAGVQLGTTV 172
Query: 61 LVLSAGPIGLVTILAAKAYGARVICVCK 88
LV+ AGPIGLV++LAAKAYGA V+C +
Sbjct: 173 LVIGAGPIGLVSVLAAKAYGAFVVCTAR 200
>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase
Length = 355
Score = 128 bits (321), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 75/100 (75%)
Query: 1 MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
+ FCATPP GNL +FYKH A+FCYKLPD++T EEGAL+EPL+VG+HAC+R+GV LG V
Sbjct: 115 IFFCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHACRRAGVTLGNKV 174
Query: 61 LVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
LV AGPIGLV +LAAKA GA + V R+ K++
Sbjct: 175 LVCGAGPIGLVNLLAAKAMGAAQVVVTDLSASRLSKAKEV 214
>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL7|B Chain B, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL7|C Chain C, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL7|D Chain D, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL8|A Chain A, Human SdhNAD+ COMPLEX
pdb|1PL8|B Chain B, Human SdhNAD+ COMPLEX
pdb|1PL8|C Chain C, Human SdhNAD+ COMPLEX
pdb|1PL8|D Chain D, Human SdhNAD+ COMPLEX
Length = 356
Score = 125 bits (313), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 73/100 (73%)
Query: 1 MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
+ FCATPP GNL +FYKH A FCYKLPD++T EEGAL+EPL+VG+HAC+R GV LG V
Sbjct: 116 IFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKV 175
Query: 61 LVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
LV AGPIG+VT+L AKA GA + V R+ K+I
Sbjct: 176 LVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI 215
>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX
pdb|1PL6|B Chain B, Human SdhNADHINHIBITOR COMPLEX
pdb|1PL6|C Chain C, Human SdhNADHINHIBITOR COMPLEX
pdb|1PL6|D Chain D, Human SdhNADHINHIBITOR COMPLEX
Length = 356
Score = 123 bits (309), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 72/100 (72%)
Query: 1 MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
+ FCATPP GNL +FYKH A FCYKLPD++T EEGAL+EPL+VG+HAC+R GV LG V
Sbjct: 116 IFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKV 175
Query: 61 LVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
LV AGPIG VT+L AKA GA + V R+ K+I
Sbjct: 176 LVCGAGPIGXVTLLVAKAXGAAQVVVTDLSATRLSKAKEI 215
>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase
pdb|3M6I|B Chain B, L-Arabinitol 4-Dehydrogenase
Length = 363
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLV 62
F +TPP G L ++ H A +C+K+ +++ E GA+LEPL+V + +R+GV LG VL+
Sbjct: 127 FLSTPPVPGLLRRYVNHPAVWCHKI-GNMSYENGAMLEPLSVALAGLQRAGVRLGDPVLI 185
Query: 63 LSAGPIGLVTILAAKAYGA 81
AGPIGL+T+L AKA GA
Sbjct: 186 CGAGPIGLITMLCAKAAGA 204
>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase
From Escherichia Coli
pdb|4A2C|B Chain B, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase
From Escherichia Coli
Length = 346
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 25 YKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVI 84
+ LP + +E+GA +EP+ VG+HA + +V+++ AG IGL+ I A A GA+ +
Sbjct: 129 FALPTDMPIEDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSV 188
>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase
pdb|2DQ4|B Chain B, Crystal Structure Of Threonine 3-Dehydrogenase
pdb|2EJV|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Complexed
With Nad+
pdb|2EJV|B Chain B, Crystal Structure Of Threonine 3-Dehydrogenase Complexed
With Nad+
Length = 343
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHAC-KRSGVGLGTSVLVLSAGP 67
G +++ A+ + P L E A+LEP VH SGV G SVL+ AGP
Sbjct: 117 RDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGVS-GKSVLITGAGP 175
Query: 68 IGLVTILAAKAYGARVICVCK 88
IGL+ + +A GA I V
Sbjct: 176 IGLMAAMVVRASGAGPILVSD 196
>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-295 Of C. Beijerinckii
Adh By T. Brockii Adh
Length = 351
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 27 LPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAK-------- 77
LP + LE ++ + + G H + + + LG +V VL GP+GL+ + AK
Sbjct: 136 LPKDMPLENAVMITDMMTTGFHGAELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRII 195
Query: 78 AYGARVICV--CKYVG 91
A G+R +CV KY G
Sbjct: 196 AVGSRPVCVDAAKYYG 211
>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The
Alcohol Dehydrogenases (Adhs)
pdb|2NVB|B Chain B, Contribution Of Pro275 To The Thermostability Of The
Alcohol Dehydrogenases (Adhs)
pdb|2NVB|C Chain C, Contribution Of Pro275 To The Thermostability Of The
Alcohol Dehydrogenases (Adhs)
pdb|2NVB|D Chain D, Contribution Of Pro275 To The Thermostability Of The
Alcohol Dehydrogenases (Adhs)
Length = 352
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 27 LPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAK-------- 77
LP + LE ++ + + G H + + + LG +V VL GP+GL+ + AK
Sbjct: 136 LPKEIPLEAAVMIPDMMTTGFHGAELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRII 195
Query: 78 AYGARVICV--CKYVG 91
A G+R +CV KY G
Sbjct: 196 AVGSRPVCVDAAKYYG 211
>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|B Chain B, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|C Chain C, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|D Chain D, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
Length = 339
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVH-ACKRSGVGLGTSVLVLSAGPI 68
G +++ + AAD+ K+PD+L+ EE A + V + A K +G G V + G +
Sbjct: 117 DGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGL 176
Query: 69 GLVTILAAKAYGARVICV 86
G V + AKA G V+ V
Sbjct: 177 GHVAVQYAKAMGLNVVAV 194
>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium
Brockii
pdb|1YKF|B Chain B, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium
Brockii
pdb|1YKF|C Chain C, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium
Brockii
pdb|1YKF|D Chain D, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium
Brockii
pdb|1BXZ|A Chain A, Crystal Structure Of A Thermophilic Alcohol Dehydrogenase
Substrate Complex From Thermoanaerobacter Brockii
pdb|1BXZ|B Chain B, Crystal Structure Of A Thermophilic Alcohol Dehydrogenase
Substrate Complex From Thermoanaerobacter Brockii
pdb|1BXZ|C Chain C, Crystal Structure Of A Thermophilic Alcohol Dehydrogenase
Substrate Complex From Thermoanaerobacter Brockii
pdb|1BXZ|D Chain D, Crystal Structure Of A Thermophilic Alcohol Dehydrogenase
Substrate Complex From Thermoanaerobacter Brockii
Length = 352
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 16 FYKHAADFCYK-LPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTI 73
F+ + AD LP + LE ++ + + G H + + + LG +V VL GP+GL+ +
Sbjct: 124 FHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELADIELGATVAVLGIGPVGLMAV 183
Query: 74 LAAK--------AYGARVICV--CKYVG-IRIFPYKK 99
AK A G+R +CV KY G I YK
Sbjct: 184 AGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKD 220
>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase
(Target Psi-012003) From Sinorhizobium Meliloti 1021
pdb|4EJM|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase
(Target Psi-012003) From Sinorhizobium Meliloti 1021
Bound To Nadp
Length = 370
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPI 68
G +++ +++P L GA EPLA +H SG+ G++V +L G I
Sbjct: 135 RDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCLHGVDLSGIKAGSTVAILGGGVI 194
Query: 69 GLVTILAAKAYGARVI 84
GL+T+ A+ GA +
Sbjct: 195 GLLTVQLARLAGATTV 210
>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|C Chain C, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|B Chain B, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|D Chain D, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
Length = 339
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVH-ACKRSGVGLGTSVLVLSAGPI 68
G +++ + AAD+ K+PD+L+ EE A + V + A K +G G V + G
Sbjct: 117 DGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGF 176
Query: 69 GLVTILAAKAYGARVICV 86
G V + AKA G V+ V
Sbjct: 177 GHVAVQYAKAMGLNVVAV 194
>pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
pdb|3GFB|B Chain B, L-Threonine Dehydrogenase (Tktdh) From The
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
pdb|3GFB|C Chain C, L-Threonine Dehydrogenase (Tktdh) From The
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
pdb|3GFB|D Chain D, L-Threonine Dehydrogenase (Tktdh) From The
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
Length = 350
Score = 38.5 bits (88), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 21 ADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYG 80
A +K P + E AL EPL V +G G S L+ AGP+GL+ I AKA G
Sbjct: 133 AKNAWKNPKDMPPEYAALQEPLGNAVDTV-LAGPIAGRSTLITGAGPLGLLGIAVAKASG 191
Query: 81 ARVICVCKYVGIRIFPYKKI 100
A + V + R KK+
Sbjct: 192 AYPVIVSEPSEFRRKLAKKV 211
>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus
Horikoshii
pdb|2DFV|B Chain B, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus
Horikoshii
pdb|2DFV|C Chain C, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus
Horikoshii
Length = 347
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIG 69
G +++ A +K P + E L EPL V +G G SVL+ AGP+G
Sbjct: 121 DGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTV-LAGPISGKSVLITGAGPLG 179
Query: 70 LVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
L+ I AKA GA + V + R KK+
Sbjct: 180 LLGIAVAKASGAYPVIVSEPSDFRRELAKKV 210
>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3
Length = 348
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIG 69
G +++ A +K P + E L EPL V +G G SVL+ AGP+G
Sbjct: 122 DGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTV-LAGPISGKSVLITGAGPLG 180
Query: 70 LVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
L+ I AKA GA + V + R KK+
Sbjct: 181 LLGIAVAKASGAYPVIVSEPSDFRRELAKKV 211
>pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form)
pdb|1PED|B Chain B, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form)
pdb|1PED|C Chain C, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form)
pdb|1PED|D Chain D, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form)
pdb|1KEV|A Chain A, Structure Of Nadp-Dependent Alcohol Dehydrogenase
pdb|1KEV|B Chain B, Structure Of Nadp-Dependent Alcohol Dehydrogenase
pdb|1KEV|C Chain C, Structure Of Nadp-Dependent Alcohol Dehydrogenase
pdb|1KEV|D Chain D, Structure Of Nadp-Dependent Alcohol Dehydrogenase
Length = 351
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 27 LPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVI 84
LP + LE ++ + + G H + + + +G+SV+V+ G +GL+ I AK GA R+I
Sbjct: 136 LPKDMPLENAVMITDMMTTGFHGAELADIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRII 195
Query: 85 CV 86
V
Sbjct: 196 GV 197
>pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii:
Crystal Structure Of Mutant With Enhanced Thermal
Stability
pdb|1JQB|B Chain B, Alcohol Dehydrogenase From Clostridium Beijerinckii:
Crystal Structure Of Mutant With Enhanced Thermal
Stability
pdb|1JQB|C Chain C, Alcohol Dehydrogenase From Clostridium Beijerinckii:
Crystal Structure Of Mutant With Enhanced Thermal
Stability
pdb|1JQB|D Chain D, Alcohol Dehydrogenase From Clostridium Beijerinckii:
Crystal Structure Of Mutant With Enhanced Thermal
Stability
Length = 351
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 27 LPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVI 84
LP + LE ++ + + G H + + + +G+SV+V+ G +GL+ I AK GA R+I
Sbjct: 136 LPKDMPLENAVMITDMMTTGFHGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRII 195
Query: 85 CV 86
V
Sbjct: 196 GV 197
>pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium
Beijerinckii Alcohol Dehydrogenase Is Critical For
Thermostabilization
pdb|2B83|B Chain B, A Single Amino Acid Substitution In The Clostridium
Beijerinckii Alcohol Dehydrogenase Is Critical For
Thermostabilization
pdb|2B83|C Chain C, A Single Amino Acid Substitution In The Clostridium
Beijerinckii Alcohol Dehydrogenase Is Critical For
Thermostabilization
pdb|2B83|D Chain D, A Single Amino Acid Substitution In The Clostridium
Beijerinckii Alcohol Dehydrogenase Is Critical For
Thermostabilization
Length = 351
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 27 LPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVI 84
LP + LE ++ + + G H + + + +G+SV+V+ G +GL+ I AK GA R+I
Sbjct: 136 LPKDMPLENAVMITDMMTTGFHGAELADIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRII 195
Query: 85 CV 86
V
Sbjct: 196 GV 197
>pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By
C. Beijerinckii Adh
pdb|3FSR|B Chain B, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By
C. Beijerinckii Adh
pdb|3FSR|C Chain C, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By
C. Beijerinckii Adh
pdb|3FSR|D Chain D, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By
C. Beijerinckii Adh
Length = 352
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 27 LPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVI 84
LP + LE ++ + + G H + + + +G+SV+V+ G +GL+ I AK GA R+I
Sbjct: 136 LPKEIPLEAAVMIPDMMTTGFHGAELADIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRII 195
Query: 85 CV 86
V
Sbjct: 196 GV 197
>pdb|3FPC|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By
E. Histolytica Adh
pdb|3FPC|B Chain B, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By
E. Histolytica Adh
pdb|3FPC|C Chain C, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By
E. Histolytica Adh
pdb|3FPC|D Chain D, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By
E. Histolytica Adh
Length = 352
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 27 LPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA 81
LP + LE ++ + + G H + + + LG +V V+ GP+GL+++ A GA
Sbjct: 136 LPKEIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGANHLGA 191
>pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE
BY EXCHANGE Of The Cofactor Binding Domain Res 153-295
Of T. Brockii Adh By C. Beijerinckii Adh
pdb|3FTN|B Chain B, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE
BY EXCHANGE Of The Cofactor Binding Domain Res 153-295
Of T. Brockii Adh By C. Beijerinckii Adh
pdb|3FTN|C Chain C, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE
BY EXCHANGE Of The Cofactor Binding Domain Res 153-295
Of T. Brockii Adh By C. Beijerinckii Adh
pdb|3FTN|D Chain D, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE
BY EXCHANGE Of The Cofactor Binding Domain Res 153-295
Of T. Brockii Adh By C. Beijerinckii Adh
Length = 352
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 27 LPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVI 84
LP + LE ++ + + G H + + + +G+SV+V+ G +GL+ I AK GA R+I
Sbjct: 136 LPKEIPLEAAVMIPDMMTTGFHGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRII 195
Query: 85 CV 86
V
Sbjct: 196 GV 197
>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase
(rspb) From E. Coli Cft073 (efi Target Efi-506413)
Complexed With Cofactor Nadh
pdb|4ILK|B Chain B, Crystal Structure Of Short Chain Alcohol Dehydrogenase
(rspb) From E. Coli Cft073 (efi Target Efi-506413)
Complexed With Cofactor Nadh
Length = 359
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 11 GNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGL 70
G S++ A +K+P+ + + ++EP + + +VLV AGPIGL
Sbjct: 135 GGFSEYAVVPAKNAWKIPEAVADQYAVMIEPFTIAANVTGHGQPTENDTVLVYGAGPIGL 194
Query: 71 VTILAAKA-YGARVICVCKYVGIRIFPYKK 99
+ K Y + + V + R+ K+
Sbjct: 195 TIVQVLKGVYNVKNVIVADRIDERLEKAKE 224
>pdb|1Y9A|A Chain A, Alcohol Dehydrogenase From Entamoeba Histolotica In
Complex With Cacodylate
pdb|1Y9A|C Chain C, Alcohol Dehydrogenase From Entamoeba Histolotica In
Complex With Cacodylate
Length = 360
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 27 LPDHLTLEEGALLEPL-AVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA 81
LP + E+ +L + G H + + + LG +V V+ GP+GL+++ A GA
Sbjct: 136 LPRDIKPEDAVMLSDMVTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGANHLGA 191
>pdb|2OUI|A Chain A, D275p Mutant Of Alcohol Dehydrogenase From Protozoa
Entamoeba Histolytica
pdb|2OUI|B Chain B, D275p Mutant Of Alcohol Dehydrogenase From Protozoa
Entamoeba Histolytica
pdb|2OUI|C Chain C, D275p Mutant Of Alcohol Dehydrogenase From Protozoa
Entamoeba Histolytica
pdb|2OUI|D Chain D, D275p Mutant Of Alcohol Dehydrogenase From Protozoa
Entamoeba Histolytica
Length = 360
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 27 LPDHLTLEEGALLEPL-AVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA 81
LP + E+ +L + G H + + + LG +V V+ GP+GL+++ A GA
Sbjct: 136 LPRDIKPEDAVMLSDMVTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGANHLGA 191
>pdb|3IP1|A Chain A, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|B Chain B, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|C Chain C, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|D Chain D, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
Length = 404
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 36 GALLEPLAVGVHACKRSGVGL--GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR 93
G+L+EP +V +A G G+ G +V++L GPIGL + K GA + + + +R
Sbjct: 191 GSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVR 250
>pdb|2VN8|A Chain A, Crystal Structure Of Human Reticulon 4 Interacting Protein
1 In Complex With Nadph
pdb|2VN8|B Chain B, Crystal Structure Of Human Reticulon 4 Interacting Protein
1 In Complex With Nadph
Length = 375
Score = 33.5 bits (75), Expect = 0.029, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 2 VFCATPP-HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGL---- 56
V+ A PP G LS+F + + P LT + A L +A+ + GL
Sbjct: 122 VWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKN 181
Query: 57 --GTSVLVLSA-GPIGLVTILAAKAYGARVICVC 87
G VL+L A G +G I KA+ A V VC
Sbjct: 182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC 215
>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3Q4T|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3SOC|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|3SOC|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|4ASX|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
pdb|4ASX|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
Length = 322
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 52 SGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK------YVGIRIFP 96
SGV LGT L + P+ L+ + A +G CV K YV ++IFP
Sbjct: 10 SGVDLGTENLYFQSMPLQLLEVKARGRFG----CVWKAQLLNEYVAVKIFP 56
>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
pdb|2EIH|B Chain B, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
Length = 343
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 9 HHGNLSQFYKHAADFCYKLPDHLTLEEGAL--LEPLAVGVHACKRSGVGLGTSVLVLSAG 66
HG +++ P +L+ EE A L L + GV G VLV++AG
Sbjct: 117 RHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAG 176
Query: 67 P-IGLVTILAAKAYGARVICVC 87
+ + I AK +GARVI
Sbjct: 177 SGVSVAAIQIAKLFGARVIATA 198
>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
pdb|1YB5|B Chain B, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
Length = 351
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 17 YKHAADFC-YKLPDHLTLEEGALLE-PLAVGVHACKRSG-VGLGTSVLVLSA-GPIGLVT 72
Y AAD YKLP+ L ++GA + P A S V G SVLV A G +GL
Sbjct: 128 YALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAA 187
Query: 73 ILAAKAYGARVI 84
A+AYG +++
Sbjct: 188 CQIARAYGLKIL 199
>pdb|2DPH|A Chain A, Crystal Structure Of Formaldehyde Dismutase
pdb|2DPH|B Chain B, Crystal Structure Of Formaldehyde Dismutase
Length = 398
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 42 LAVGVHACKRSGVGLGTSVLVLSAGPIG 69
L G H C +GV G+ V + AGP+G
Sbjct: 171 LPTGFHGCVSAGVKPGSHVYIAGAGPVG 198
>pdb|1KOL|A Chain A, Crystal Structure Of Formaldehyde Dehydrogenase
pdb|1KOL|B Chain B, Crystal Structure Of Formaldehyde Dehydrogenase
Length = 398
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 21 ADF-CYKLPDHLTLEEGA-----LLEPLAVGVHACKRSGVGLGTSVLVLSAGPIG 69
ADF KLPD E L + L G H +GVG G++V V AGP+G
Sbjct: 144 ADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVG 198
>pdb|2BRY|A Chain A, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2BRY|B Chain B, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2C4C|A Chain A, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
pdb|2C4C|B Chain B, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
Length = 497
Score = 29.6 bits (65), Expect = 0.41, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 11 GNLSQFYKHAADFCYKLPDHL--TLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPI 68
G LSQ++K A Y L L++ A +P+ AC T LV+ AGP
Sbjct: 51 GGLSQYHKIKAQLNYWSAKSLWAKLDKRAS-QPVYQQGQACTN------TKCLVVGAGPC 103
Query: 69 GLVTILAAKAYGARVICVCKYV 90
GL + GARV+ V K +
Sbjct: 104 GLRAAVELALLGARVVLVEKRI 125
>pdb|2BRA|A Chain A, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
pdb|2BRA|B Chain B, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
Length = 484
Score = 29.6 bits (65), Expect = 0.49, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 11 GNLSQFYKHAADFCYKLPDHL--TLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPI 68
G LSQ++K A Y L L++ A +P+ AC T LV+ AGP
Sbjct: 43 GGLSQYHKIKAQLNYWSAKSLWAKLDKRAS-QPVYQQGQACTN------TKCLVVGAGPC 95
Query: 69 GLVTILAAKAYGARVICVCKYV 90
GL + GARV+ V K +
Sbjct: 96 GLRAAVELALLGARVVLVEKRI 117
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
Length = 566
Score = 29.3 bits (64), Expect = 0.61, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCK 88
T VLV+ AG G LAAK GA VI V K
Sbjct: 122 TQVLVVGAGSAGFNASLAAKKAGANVILVDK 152
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91
V+V+ AGP G V + A G + C+ KY+G
Sbjct: 5 DVVVIGAGPGGYVAAIRAAQLGLKTACIEKYIG 37
>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From
Acinetobacter Calcoaceticus
Length = 371
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 38 LLEPLAVGVH----ACKRS-GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92
LL PL G+ AC + V +S + AG +GL +LAAK GA +I V
Sbjct: 167 LLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVES 226
Query: 93 RIFPYKKI 100
R+ K++
Sbjct: 227 RLELAKQL 234
>pdb|3GOH|A Chain A, Crystal Structure Of Alcohol Dehydrogenase Superfamily
Protein (np_718042.1) From Shewanella Oneidensis At 1.55
A Resolution
Length = 315
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLE-PLAVGVHACKRSGVGLGTSVLVLSAGPI 68
HG+ ++F D LPD+L+ E A L PL A ++ + VL++ G +
Sbjct: 95 HGSFAEFTVLNTDRVXTLPDNLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAV 154
>pdb|2YFG|E Chain E, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 36 GALLEPLAVGV-------HACKRSGVGL-GTSVLVLSAGPIGLVTILAAKAYGARVICVC 87
G+L+ P A G KR G+G G V V +G + I A +GARVI
Sbjct: 203 GSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITAS 262
Query: 88 KYVGIRI 94
G+ +
Sbjct: 263 DSSGLVV 269
>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From
Staphylococcus Haemolyticus
pdb|3FBG|B Chain B, Crystal Structure Of A Putative Arginate Lyase From
Staphylococcus Haemolyticus
Length = 346
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGL------ 56
+ +P +G+ +++ K P +++ E+ L + + G+
Sbjct: 89 YSGSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNE 148
Query: 57 --GTSVLVLS-AGPIGLVTILAAKAYGARVI 84
G ++L+++ AG +G + AKAYG RVI
Sbjct: 149 NEGKTLLIINGAGGVGSIATQIAKAYGLRVI 179
>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|B Chain B, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|C Chain C, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|D Chain D, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
Length = 380
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 57 GTSVLVLSAGPIGLVTILAAKAYGARVICV 86
G +V++ AGP+GL ++ A++ GA + V
Sbjct: 196 GKTVVIQGAGPLGLFGVVIARSLGAENVIV 225
>pdb|4FCC|A Chain A, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|B Chain B, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|C Chain C, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|D Chain D, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|E Chain E, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|F Chain F, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|G Chain G, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|H Chain H, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|I Chain I, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|J Chain J, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|K Chain K, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|L Chain L, Glutamate Dehydrogenase From E. Coli
pdb|4FHN|X Chain X, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 450
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 36 GALLEPLAVGV-------HACKRSGVGL-GTSVLVLSAGPIGLVTILAAKAYGARVI 84
G+L+ P A G KR G+G G V V +G + I A +GARVI
Sbjct: 206 GSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVI 262
>pdb|3SBO|A Chain A, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|B Chain B, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|C Chain C, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|D Chain D, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|E Chain E, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|F Chain F, Structure Of E.Coli Gdh From Native Source
pdb|2YFG|A Chain A, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|B Chain B, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|C Chain C, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|D Chain D, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|F Chain F, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 36 GALLEPLAVGV-------HACKRSGVGL-GTSVLVLSAGPIGLVTILAAKAYGARVI 84
G+L+ P A G KR G+G G V V +G + I A +GARVI
Sbjct: 203 GSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVI 259
>pdb|2YFH|A Chain A, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|B Chain B, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|C Chain C, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|D Chain D, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|E Chain E, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|F Chain F, Structure Of A Chimeric Glutamate Dehydrogenase
Length = 448
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 36 GALLEPLAVGV-------HACKRSGVGL-GTSVLVLSAGPIGLVTILAAKAYGARVI 84
G+L+ P A G KR G+G G V V +G + I A +GARVI
Sbjct: 202 GSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVI 258
>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
pdb|4A27|B Chain B, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
Length = 349
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 22 DFCYKLPDHLTLEEGAL--LEPLAVGVHACKRSGVGLGTSVLVLSAG 66
+F YK+PD ++ E A + + V + + + G SVLV SAG
Sbjct: 106 EFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAG 152
>pdb|2CD9|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
pdb|2CD9|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
pdb|2CDA|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp
pdb|2CDA|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp
Length = 366
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARV 83
VLV+ GPIG++ L + YG V
Sbjct: 184 VLVVGTGPIGVLFTLLFRTYGLEV 207
>pdb|2CDB|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDC|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
Length = 366
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARV 83
VLV+ GPIG++ L + YG V
Sbjct: 184 VLVVGTGPIGVLFTLLFRTYGLEV 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.143 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,178,012
Number of Sequences: 62578
Number of extensions: 109110
Number of successful extensions: 382
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 63
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)