Query psy16556
Match_columns 100
No_of_seqs 193 out of 1374
Neff 9.7
Searched_HMMs 46136
Date Sat Aug 17 00:12:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0024|consensus 99.9 1.3E-26 2.9E-31 152.5 9.1 100 1-100 114-213 (354)
2 COG1064 AdhP Zn-dependent alco 99.9 4.5E-25 9.7E-30 147.3 6.7 96 3-100 113-209 (339)
3 COG0604 Qor NADPH:quinone redu 99.9 6.8E-22 1.5E-26 132.7 10.5 91 9-100 93-186 (326)
4 PRK09880 L-idonate 5-dehydroge 99.9 6.3E-21 1.4E-25 128.3 10.4 92 9-100 122-213 (343)
5 TIGR03366 HpnZ_proposed putati 99.8 4.1E-20 9E-25 121.4 11.1 92 9-100 71-164 (280)
6 cd08237 ribitol-5-phosphate_DH 99.8 4.2E-20 9.1E-25 124.4 10.4 90 10-99 114-207 (341)
7 TIGR02818 adh_III_F_hyde S-(hy 99.8 5.1E-20 1.1E-24 125.0 10.6 91 10-100 137-229 (368)
8 TIGR02822 adh_fam_2 zinc-bindi 99.8 7.2E-20 1.6E-24 122.8 10.8 90 10-100 118-208 (329)
9 cd08239 THR_DH_like L-threonin 99.8 1.2E-19 2.6E-24 121.6 10.4 90 10-99 116-206 (339)
10 cd08281 liver_ADH_like1 Zinc-d 99.8 1.6E-19 3.4E-24 122.6 10.5 90 11-100 144-235 (371)
11 PLN02740 Alcohol dehydrogenase 99.8 1.6E-19 3.5E-24 123.1 9.6 91 10-100 150-242 (381)
12 COG1063 Tdh Threonine dehydrog 99.8 2.5E-19 5.3E-24 121.3 10.0 91 9-99 119-211 (350)
13 KOG0023|consensus 99.8 8.2E-20 1.8E-24 120.6 6.4 88 10-98 134-223 (360)
14 cd08300 alcohol_DH_class_III c 99.8 5.1E-19 1.1E-23 120.0 10.3 91 10-100 138-230 (368)
15 cd08301 alcohol_DH_plants Plan 99.8 1E-18 2.2E-23 118.5 10.8 91 10-100 139-231 (369)
16 TIGR03451 mycoS_dep_FDH mycoth 99.8 7.7E-19 1.7E-23 118.7 9.8 91 10-100 128-220 (358)
17 cd08277 liver_alcohol_DH_like 99.8 1.2E-18 2.7E-23 118.1 10.6 90 10-99 136-227 (365)
18 PRK10309 galactitol-1-phosphat 99.8 1.9E-18 4.2E-23 116.2 11.0 90 10-99 114-203 (347)
19 PLN02827 Alcohol dehydrogenase 99.8 1.5E-18 3.4E-23 118.3 10.6 91 10-100 145-237 (378)
20 KOG1198|consensus 99.8 1.4E-18 3.1E-23 117.4 9.7 91 9-100 102-201 (347)
21 KOG0022|consensus 99.8 1.8E-18 4E-23 114.0 8.0 90 11-100 145-236 (375)
22 TIGR03201 dearomat_had 6-hydro 99.8 4.6E-18 9.9E-23 114.7 10.0 90 10-100 113-209 (349)
23 cd08295 double_bond_reductase_ 99.8 9.5E-18 2.1E-22 112.5 10.3 88 11-99 101-194 (338)
24 cd08233 butanediol_DH_like (2R 99.8 1.6E-17 3.4E-22 111.9 11.1 90 10-99 126-215 (351)
25 COG1062 AdhC Zn-dependent alco 99.8 3.3E-18 7.2E-23 113.8 7.6 90 11-100 138-229 (366)
26 PLN02586 probable cinnamyl alc 99.8 8.1E-18 1.7E-22 114.1 9.7 84 10-94 135-220 (360)
27 cd08299 alcohol_DH_class_I_II_ 99.8 1.6E-17 3.5E-22 113.0 10.6 90 10-99 142-233 (373)
28 TIGR01202 bchC 2-desacetyl-2-h 99.7 9.9E-18 2.1E-22 111.6 9.1 88 10-99 100-187 (308)
29 PLN02178 cinnamyl-alcohol dehy 99.7 1.6E-17 3.4E-22 113.3 10.0 89 10-99 129-221 (375)
30 cd08230 glucose_DH Glucose deh 99.7 2.4E-17 5.1E-22 111.4 10.4 90 9-100 119-218 (355)
31 TIGR02825 B4_12hDH leukotriene 99.7 4.3E-17 9.2E-22 108.8 10.7 89 11-100 86-182 (325)
32 cd08246 crotonyl_coA_red croto 99.7 3.9E-17 8.5E-22 111.6 10.5 90 9-99 142-236 (393)
33 PLN03154 putative allyl alcoho 99.7 7.9E-17 1.7E-21 108.9 11.0 87 11-98 106-200 (348)
34 cd08231 MDR_TM0436_like Hypoth 99.7 1E-16 2.2E-21 108.3 11.4 90 10-99 128-220 (361)
35 KOG1197|consensus 99.7 3.7E-17 8.1E-22 105.5 8.7 90 9-99 97-189 (336)
36 TIGR02819 fdhA_non_GSH formald 99.7 5.3E-17 1.2E-21 111.4 10.0 91 10-100 132-229 (393)
37 PLN02514 cinnamyl-alcohol dehy 99.7 6.1E-17 1.3E-21 109.7 10.1 87 10-97 132-220 (357)
38 cd05279 Zn_ADH1 Liver alcohol 99.7 9.9E-17 2.1E-21 108.8 10.7 90 10-99 135-226 (365)
39 cd08242 MDR_like Medium chain 99.7 1.1E-16 2.3E-21 106.5 10.3 89 10-99 109-197 (319)
40 TIGR02817 adh_fam_1 zinc-bindi 99.7 1E-16 2.2E-21 107.1 10.2 89 10-99 95-192 (336)
41 cd08285 NADP_ADH NADP(H)-depen 99.7 1.1E-16 2.3E-21 107.9 10.3 90 10-99 117-209 (351)
42 PRK09422 ethanol-active dehydr 99.7 9.1E-17 2E-21 107.4 9.7 89 10-99 115-205 (338)
43 cd08294 leukotriene_B4_DH_like 99.7 1.7E-16 3.6E-21 105.7 10.7 88 11-99 88-186 (329)
44 cd08262 Zn_ADH8 Alcohol dehydr 99.7 1.4E-16 3E-21 106.8 10.2 90 10-99 115-204 (341)
45 cd08296 CAD_like Cinnamyl alco 99.7 1.5E-16 3.2E-21 106.6 10.3 89 10-99 116-205 (333)
46 cd08283 FDH_like_1 Glutathione 99.7 1.6E-16 3.6E-21 108.5 10.5 90 10-99 135-227 (386)
47 PRK10083 putative oxidoreducta 99.7 1.7E-16 3.7E-21 106.2 10.4 90 10-99 114-204 (339)
48 cd05285 sorbitol_DH Sorbitol d 99.7 1.9E-16 4.1E-21 106.4 10.2 90 10-99 116-205 (343)
49 cd08293 PTGR2 Prostaglandin re 99.7 1.9E-16 4.1E-21 106.2 10.2 89 11-99 101-198 (345)
50 cd08278 benzyl_alcohol_DH Benz 99.7 2.1E-16 4.5E-21 107.2 10.4 90 10-99 138-229 (365)
51 PLN02702 L-idonate 5-dehydroge 99.7 3.1E-16 6.7E-21 106.2 10.8 90 10-99 135-224 (364)
52 cd08292 ETR_like_2 2-enoyl thi 99.7 3.1E-16 6.7E-21 104.1 10.6 89 10-99 92-182 (324)
53 cd08291 ETR_like_1 2-enoyl thi 99.7 2.9E-16 6.3E-21 104.8 10.2 89 10-100 96-187 (324)
54 cd08282 PFDH_like Pseudomonas 99.7 3.8E-16 8.3E-21 106.3 10.9 90 10-99 124-219 (375)
55 cd08298 CAD2 Cinnamyl alcohol 99.7 3.7E-16 8.1E-21 104.1 10.6 89 10-99 120-209 (329)
56 cd05284 arabinose_DH_like D-ar 99.7 2.8E-16 6.1E-21 105.1 10.1 89 10-99 118-210 (340)
57 cd08238 sorbose_phosphate_red 99.7 2.7E-16 6E-21 108.2 9.7 90 10-99 113-221 (410)
58 cd08243 quinone_oxidoreductase 99.7 3.7E-16 8.1E-21 103.2 9.7 89 10-99 94-185 (320)
59 cd08284 FDH_like_2 Glutathione 99.7 5.7E-16 1.2E-20 103.8 10.4 90 10-99 118-210 (344)
60 PTZ00354 alcohol dehydrogenase 99.7 8.1E-16 1.7E-20 102.3 10.4 89 10-99 92-183 (334)
61 cd08256 Zn_ADH2 Alcohol dehydr 99.7 1.1E-15 2.3E-20 103.0 11.1 90 10-99 127-217 (350)
62 cd05188 MDR Medium chain reduc 99.7 1.1E-15 2.4E-20 98.6 10.7 89 10-99 86-176 (271)
63 cd08270 MDR4 Medium chain dehy 99.7 1.2E-15 2.5E-20 100.6 10.7 89 10-99 85-175 (305)
64 TIGR01751 crot-CoA-red crotony 99.7 1E-15 2.2E-20 104.9 10.7 89 10-99 139-232 (398)
65 cd08236 sugar_DH NAD(P)-depend 99.7 1.1E-15 2.5E-20 102.4 10.6 89 10-98 113-201 (343)
66 cd08265 Zn_ADH3 Alcohol dehydr 99.7 1.4E-15 3.1E-20 103.8 10.8 90 10-99 148-246 (384)
67 cd08235 iditol_2_DH_like L-idi 99.7 1.7E-15 3.7E-20 101.5 10.9 89 10-98 114-207 (343)
68 cd05278 FDH_like Formaldehyde 99.7 7.5E-16 1.6E-20 103.2 9.1 90 10-99 118-210 (347)
69 cd08290 ETR 2-enoyl thioester 99.7 1.1E-15 2.3E-20 102.4 9.8 88 10-98 98-192 (341)
70 cd08289 MDR_yhfp_like Yhfp put 99.7 1.2E-15 2.6E-20 101.4 9.9 89 10-99 95-189 (326)
71 cd08263 Zn_ADH10 Alcohol dehyd 99.7 1.5E-15 3.3E-20 102.9 10.4 90 10-99 139-230 (367)
72 cd08274 MDR9 Medium chain dehy 99.7 1.1E-15 2.4E-20 102.5 9.6 88 10-99 130-219 (350)
73 cd08255 2-desacetyl-2-hydroxye 99.7 1.6E-15 3.4E-20 99.1 10.0 89 11-99 52-140 (277)
74 cd05283 CAD1 Cinnamyl alcohol 99.7 1.7E-15 3.6E-20 101.7 10.4 89 10-99 122-211 (337)
75 cd08261 Zn_ADH7 Alcohol dehydr 99.7 1.7E-15 3.6E-20 101.5 10.3 88 10-99 114-201 (337)
76 cd08279 Zn_ADH_class_III Class 99.7 1.6E-15 3.4E-20 102.8 10.2 90 10-99 134-225 (363)
77 cd08232 idonate-5-DH L-idonate 99.7 1.7E-15 3.8E-20 101.4 10.2 90 10-99 119-208 (339)
78 PRK10754 quinone oxidoreductas 99.6 2.3E-15 5E-20 100.3 10.3 89 10-99 92-183 (327)
79 cd08234 threonine_DH_like L-th 99.6 2.2E-15 4.8E-20 100.5 10.1 90 10-99 113-202 (334)
80 cd08260 Zn_ADH6 Alcohol dehydr 99.6 2.4E-15 5.3E-20 100.9 10.3 89 10-99 115-207 (345)
81 PRK13771 putative alcohol dehy 99.6 2.3E-15 4.9E-20 100.5 9.7 89 10-99 115-205 (334)
82 cd08244 MDR_enoyl_red Possible 99.6 3E-15 6.5E-20 99.3 10.1 89 10-99 95-185 (324)
83 KOG0025|consensus 99.6 2.5E-15 5.3E-20 98.5 9.4 92 6-98 108-202 (354)
84 smart00829 PKS_ER Enoylreducta 99.6 3.7E-15 7.9E-20 96.6 10.3 89 10-99 56-147 (288)
85 cd05280 MDR_yhdh_yhfp Yhdh and 99.6 3.4E-15 7.5E-20 99.0 10.4 89 10-99 95-189 (325)
86 cd08297 CAD3 Cinnamyl alcohol 99.6 3.6E-15 7.7E-20 99.9 10.4 89 10-99 118-208 (341)
87 cd08288 MDR_yhdh Yhdh putative 99.6 3.6E-15 7.9E-20 99.0 10.3 89 10-99 95-189 (324)
88 cd08251 polyketide_synthase po 99.6 3E-15 6.4E-20 98.0 9.6 89 10-99 73-163 (303)
89 cd08240 6_hydroxyhexanoate_dh_ 99.6 2.5E-15 5.3E-20 101.2 9.4 90 10-99 127-218 (350)
90 cd08245 CAD Cinnamyl alcohol d 99.6 3.4E-15 7.4E-20 99.5 10.0 89 10-99 115-204 (330)
91 cd08254 hydroxyacyl_CoA_DH 6-h 99.6 3.4E-15 7.3E-20 99.5 9.7 89 10-99 117-207 (338)
92 cd08286 FDH_like_ADH2 formalde 99.6 5.4E-15 1.2E-19 99.3 10.6 90 10-99 116-209 (345)
93 TIGR02823 oxido_YhdH putative 99.6 5.3E-15 1.2E-19 98.3 10.2 89 10-99 94-188 (323)
94 cd05282 ETR_like 2-enoyl thioe 99.6 5.8E-15 1.3E-19 97.9 10.1 89 10-99 90-181 (323)
95 cd08259 Zn_ADH5 Alcohol dehydr 99.6 8.7E-15 1.9E-19 97.3 10.4 88 10-98 115-204 (332)
96 cd05195 enoyl_red enoyl reduct 99.6 1.1E-14 2.3E-19 94.4 10.5 88 10-98 60-150 (293)
97 cd08252 AL_MDR Arginate lyase 99.6 8.8E-15 1.9E-19 97.6 9.9 90 9-99 95-193 (336)
98 cd08287 FDH_like_ADH3 formalde 99.6 1.5E-14 3.3E-19 97.0 10.8 90 10-99 114-211 (345)
99 cd08269 Zn_ADH9 Alcohol dehydr 99.6 1.8E-14 4E-19 95.1 10.6 88 10-99 84-172 (312)
100 cd08276 MDR7 Medium chain dehy 99.6 1.8E-14 3.9E-19 95.8 10.0 89 10-99 112-202 (336)
101 cd05276 p53_inducible_oxidored 99.6 1.7E-14 3.6E-19 94.9 9.6 88 10-98 91-181 (323)
102 KOG1202|consensus 99.6 1.1E-15 2.4E-20 113.9 4.4 96 2-99 1497-1595(2376)
103 PRK05396 tdh L-threonine 3-deh 99.6 2.6E-14 5.7E-19 95.9 10.1 89 10-99 118-206 (341)
104 cd08258 Zn_ADH4 Alcohol dehydr 99.6 2.4E-14 5.1E-19 95.2 9.8 88 10-98 117-207 (306)
105 cd08249 enoyl_reductase_like e 99.6 1.8E-14 4E-19 96.7 9.3 88 10-99 96-196 (339)
106 TIGR00692 tdh L-threonine 3-de 99.6 2.7E-14 5.9E-19 95.8 9.9 89 10-99 116-204 (340)
107 cd05286 QOR2 Quinone oxidoredu 99.6 2.7E-14 5.9E-19 93.8 9.7 89 10-99 88-179 (320)
108 cd05281 TDH Threonine dehydrog 99.6 3.5E-14 7.5E-19 95.4 10.0 89 10-99 118-206 (341)
109 cd08250 Mgc45594_like Mgc45594 99.6 4.1E-14 8.8E-19 94.3 10.1 88 10-99 93-182 (329)
110 cd08273 MDR8 Medium chain dehy 99.6 4E-14 8.6E-19 94.2 10.0 88 10-99 91-181 (331)
111 cd08253 zeta_crystallin Zeta-c 99.6 6.5E-14 1.4E-18 92.2 10.0 89 10-99 96-187 (325)
112 TIGR02824 quinone_pig3 putativ 99.6 8.6E-14 1.9E-18 91.8 10.5 88 10-98 91-181 (325)
113 cd08248 RTN4I1 Human Reticulon 99.6 5.3E-14 1.2E-18 94.4 9.6 87 10-98 110-203 (350)
114 cd08267 MDR1 Medium chain dehy 99.5 8.3E-14 1.8E-18 91.9 10.2 88 10-99 95-185 (319)
115 cd08264 Zn_ADH_like2 Alcohol d 99.5 6.6E-14 1.4E-18 93.2 9.2 79 10-89 115-195 (325)
116 cd05288 PGDH Prostaglandin deh 99.5 9.4E-14 2E-18 92.4 9.9 88 11-99 94-188 (329)
117 COG2130 Putative NADP-dependen 99.5 5.8E-14 1.3E-18 92.5 8.2 88 11-99 101-193 (340)
118 cd08268 MDR2 Medium chain dehy 99.5 1.9E-13 4.2E-18 90.2 10.7 88 10-98 96-186 (328)
119 cd08266 Zn_ADH_like1 Alcohol d 99.5 2E-13 4.3E-18 90.7 10.2 88 10-98 118-208 (342)
120 cd08272 MDR6 Medium chain dehy 99.5 1.5E-13 3.3E-18 90.7 9.4 87 10-98 96-185 (326)
121 cd08241 QOR1 Quinone oxidoredu 99.5 3E-13 6.4E-18 89.0 9.9 89 10-99 91-182 (323)
122 cd08247 AST1_like AST1 is a cy 99.5 5.1E-13 1.1E-17 90.0 10.6 88 10-98 98-194 (352)
123 cd08271 MDR5 Medium chain dehy 99.5 8.9E-13 1.9E-17 87.2 10.1 87 10-98 93-182 (325)
124 cd05289 MDR_like_2 alcohol deh 99.5 7.4E-13 1.6E-17 86.8 9.0 87 10-98 96-185 (309)
125 cd08275 MDR3 Medium chain dehy 99.4 1.4E-11 3E-16 81.9 10.3 70 10-79 90-162 (337)
126 KOG1196|consensus 99.3 2.4E-11 5.2E-16 80.2 8.3 87 12-99 102-196 (343)
127 PRK09424 pntA NAD(P) transhydr 98.7 6.2E-08 1.4E-12 68.8 6.3 46 54-100 162-207 (509)
128 cd05213 NAD_bind_Glutamyl_tRNA 98.6 4.5E-08 9.7E-13 65.8 2.6 76 23-98 140-220 (311)
129 cd00401 AdoHcyase S-adenosyl-L 98.4 1.1E-06 2.3E-11 61.2 7.3 54 45-99 188-243 (413)
130 PRK00045 hemA glutamyl-tRNA re 98.3 7.9E-07 1.7E-11 62.1 4.1 70 26-95 147-220 (423)
131 PRK05476 S-adenosyl-L-homocyst 98.2 1.5E-05 3.3E-10 55.7 8.3 53 43-96 196-250 (425)
132 PF01488 Shikimate_DH: Shikima 98.2 9.8E-06 2.1E-10 48.3 6.4 44 55-98 10-53 (135)
133 TIGR00561 pntA NAD(P) transhyd 98.2 5.5E-06 1.2E-10 59.1 5.9 44 56-100 163-206 (511)
134 TIGR00936 ahcY adenosylhomocys 98.0 3.3E-05 7.2E-10 53.8 7.1 52 45-97 181-234 (406)
135 PRK12771 putative glutamate sy 98.0 1.7E-05 3.7E-10 57.2 5.7 37 53-90 133-169 (564)
136 TIGR01035 hemA glutamyl-tRNA r 98.0 1.4E-05 2.9E-10 55.9 4.7 74 10-95 137-218 (417)
137 PRK08306 dipicolinate synthase 97.8 0.00013 2.8E-09 48.9 7.5 42 56-98 151-192 (296)
138 PLN02494 adenosylhomocysteinas 97.8 0.0001 2.3E-09 52.2 6.9 50 46-96 241-292 (477)
139 PRK00517 prmA ribosomal protei 97.8 0.00024 5.3E-09 46.4 8.3 83 12-99 78-160 (250)
140 PRK08324 short chain dehydroge 97.8 6.2E-05 1.3E-09 55.5 5.7 76 12-97 386-462 (681)
141 TIGR00518 alaDH alanine dehydr 97.7 0.00011 2.3E-09 50.7 5.8 41 56-97 166-206 (370)
142 PRK12550 shikimate 5-dehydroge 97.7 0.00028 6E-09 46.9 7.4 50 48-97 113-162 (272)
143 PF01262 AlaDh_PNT_C: Alanine 97.6 0.00021 4.5E-09 44.1 5.7 41 57-98 20-60 (168)
144 TIGR02853 spore_dpaA dipicolin 97.6 0.00016 3.6E-09 48.2 5.4 57 40-97 129-190 (287)
145 PRK12549 shikimate 5-dehydroge 97.6 0.00041 8.9E-09 46.3 7.1 43 55-97 125-167 (284)
146 cd01075 NAD_bind_Leu_Phe_Val_D 97.6 0.00024 5.2E-09 45.1 5.6 42 55-97 26-67 (200)
147 PTZ00075 Adenosylhomocysteinas 97.6 0.00091 2E-08 47.6 8.7 70 24-94 218-290 (476)
148 TIGR01809 Shik-DH-AROM shikima 97.5 0.00034 7.4E-09 46.6 5.9 42 56-97 124-165 (282)
149 PRK05786 fabG 3-ketoacyl-(acyl 97.5 0.00038 8.2E-09 44.4 5.7 41 56-97 4-45 (238)
150 PRK03369 murD UDP-N-acetylmura 97.5 0.00035 7.5E-09 49.8 5.9 43 54-97 9-51 (488)
151 PRK00258 aroE shikimate 5-dehy 97.5 0.00044 9.6E-09 45.9 6.1 43 55-97 121-163 (278)
152 PF02826 2-Hacid_dh_C: D-isome 97.5 0.00042 9.2E-09 43.1 5.6 39 56-95 35-73 (178)
153 COG0169 AroE Shikimate 5-dehyd 97.5 0.0005 1.1E-08 45.9 5.9 44 55-98 124-167 (283)
154 PRK14027 quinate/shikimate deh 97.4 0.0009 2E-08 44.7 7.0 43 55-97 125-167 (283)
155 PRK11873 arsM arsenite S-adeno 97.4 0.00042 9.1E-09 45.6 5.3 49 50-99 71-120 (272)
156 PRK05993 short chain dehydroge 97.4 0.00071 1.5E-08 44.4 6.0 41 56-97 3-44 (277)
157 COG0300 DltE Short-chain dehyd 97.4 0.00079 1.7E-08 44.6 6.0 44 54-98 3-47 (265)
158 PRK08017 oxidoreductase; Provi 97.4 0.00065 1.4E-08 43.8 5.6 40 58-98 3-43 (256)
159 PRK12749 quinate/shikimate deh 97.4 0.0012 2.5E-08 44.2 6.8 37 56-92 123-159 (288)
160 PRK06949 short chain dehydroge 97.4 0.00075 1.6E-08 43.5 5.7 41 55-96 7-48 (258)
161 cd01065 NAD_bind_Shikimate_DH 97.3 0.0023 4.9E-08 38.5 7.3 49 48-96 9-58 (155)
162 PRK06057 short chain dehydroge 97.3 0.00093 2E-08 43.2 5.7 40 56-96 6-46 (255)
163 PRK05872 short chain dehydroge 97.3 0.00098 2.1E-08 44.3 5.8 40 56-96 8-48 (296)
164 PRK07231 fabG 3-ketoacyl-(acyl 97.3 0.00097 2.1E-08 42.8 5.6 40 56-96 4-44 (251)
165 PRK04148 hypothetical protein; 97.3 0.00075 1.6E-08 40.3 4.6 45 53-99 13-57 (134)
166 COG4221 Short-chain alcohol de 97.3 0.0011 2.4E-08 43.3 5.6 42 56-98 5-47 (246)
167 PRK07814 short chain dehydroge 97.3 0.0011 2.3E-08 43.2 5.7 39 56-95 9-48 (263)
168 COG3967 DltE Short-chain dehyd 97.3 0.00093 2E-08 42.9 5.1 43 56-99 4-47 (245)
169 PRK08217 fabG 3-ketoacyl-(acyl 97.2 0.0012 2.5E-08 42.4 5.7 39 56-95 4-43 (253)
170 PLN03209 translocon at the inn 97.2 0.0011 2.3E-08 48.2 6.0 50 46-96 68-119 (576)
171 PLN02780 ketoreductase/ oxidor 97.2 0.0012 2.5E-08 44.7 5.9 41 56-97 52-93 (320)
172 cd01078 NAD_bind_H4MPT_DH NADP 97.2 0.0024 5.2E-08 40.1 6.9 40 56-96 27-67 (194)
173 PRK06200 2,3-dihydroxy-2,3-dih 97.2 0.0012 2.7E-08 42.8 5.7 41 56-97 5-46 (263)
174 PRK08339 short chain dehydroge 97.2 0.0012 2.6E-08 43.2 5.6 40 56-96 7-47 (263)
175 PRK12548 shikimate 5-dehydroge 97.2 0.0015 3.3E-08 43.6 6.1 37 55-91 124-160 (289)
176 PF02737 3HCDH_N: 3-hydroxyacy 97.2 0.0012 2.6E-08 41.2 5.3 39 59-98 1-39 (180)
177 PF00670 AdoHcyase_NAD: S-aden 97.2 0.0031 6.7E-08 38.9 6.8 51 45-96 9-61 (162)
178 PRK05866 short chain dehydroge 97.2 0.0014 2.9E-08 43.7 5.8 40 56-96 39-79 (293)
179 PRK07326 short chain dehydroge 97.2 0.0013 2.8E-08 41.9 5.5 40 56-96 5-45 (237)
180 TIGR03325 BphB_TodD cis-2,3-di 97.2 0.0014 3E-08 42.6 5.7 41 56-97 4-45 (262)
181 PRK07523 gluconate 5-dehydroge 97.2 0.0015 3.2E-08 42.2 5.7 39 56-95 9-48 (255)
182 PF13478 XdhC_C: XdhC Rossmann 97.2 0.0004 8.7E-09 41.6 2.8 35 60-95 1-35 (136)
183 PRK07831 short chain dehydroge 97.2 0.0015 3.2E-08 42.5 5.7 42 54-96 14-57 (262)
184 PRK07062 short chain dehydroge 97.2 0.0015 3.3E-08 42.4 5.7 40 56-96 7-47 (265)
185 PRK06139 short chain dehydroge 97.2 0.0013 2.9E-08 44.6 5.6 40 56-96 6-46 (330)
186 PRK12828 short chain dehydroge 97.1 0.0015 3.2E-08 41.5 5.4 37 56-93 6-43 (239)
187 PRK07060 short chain dehydroge 97.1 0.0017 3.6E-08 41.6 5.6 40 56-96 8-48 (245)
188 PRK12829 short chain dehydroge 97.1 0.0015 3.3E-08 42.2 5.5 42 54-96 8-50 (264)
189 PRK08213 gluconate 5-dehydroge 97.1 0.0017 3.7E-08 42.0 5.7 40 56-96 11-51 (259)
190 PRK06180 short chain dehydroge 97.1 0.0019 4.1E-08 42.4 5.9 40 56-96 3-43 (277)
191 PRK05867 short chain dehydroge 97.1 0.0017 3.6E-08 42.0 5.6 40 56-96 8-48 (253)
192 PRK08945 putative oxoacyl-(acy 97.1 0.0019 4.2E-08 41.5 5.9 41 54-95 9-50 (247)
193 PRK07576 short chain dehydroge 97.1 0.0018 3.9E-08 42.3 5.7 39 56-95 8-47 (264)
194 PRK13940 glutamyl-tRNA reducta 97.1 0.0039 8.5E-08 43.8 7.7 45 53-97 177-221 (414)
195 TIGR02964 xanthine_xdhC xanthi 97.1 0.0015 3.2E-08 42.9 5.2 39 53-92 96-134 (246)
196 PRK07825 short chain dehydroge 97.1 0.0018 3.9E-08 42.3 5.7 39 57-96 5-44 (273)
197 PRK08703 short chain dehydroge 97.1 0.0017 3.7E-08 41.5 5.5 39 56-95 5-44 (239)
198 PRK09072 short chain dehydroge 97.1 0.0019 4.1E-08 42.0 5.7 41 56-97 4-45 (263)
199 PRK09291 short chain dehydroge 97.1 0.0018 3.9E-08 41.7 5.6 38 57-95 2-40 (257)
200 PRK07890 short chain dehydroge 97.1 0.0017 3.7E-08 41.9 5.5 40 56-96 4-44 (258)
201 cd05311 NAD_bind_2_malic_enz N 97.1 0.0048 1E-07 39.9 7.5 44 47-90 14-60 (226)
202 PRK06841 short chain dehydroge 97.1 0.0019 4.1E-08 41.6 5.6 39 56-95 14-53 (255)
203 PF13460 NAD_binding_10: NADH( 97.1 0.002 4.3E-08 39.6 5.5 36 60-96 1-37 (183)
204 PF02353 CMAS: Mycolic acid cy 97.1 0.00099 2.1E-08 44.3 4.2 49 49-99 55-103 (273)
205 PRK00377 cbiT cobalt-precorrin 97.1 0.0026 5.6E-08 40.1 6.0 50 49-99 33-83 (198)
206 PRK07063 short chain dehydroge 97.1 0.002 4.4E-08 41.7 5.7 40 56-96 6-46 (260)
207 PRK07677 short chain dehydroge 97.1 0.0019 4.1E-08 41.7 5.5 39 57-96 1-40 (252)
208 COG2230 Cfa Cyclopropane fatty 97.1 0.0079 1.7E-07 40.2 8.3 48 50-99 66-113 (283)
209 PRK06500 short chain dehydroge 97.1 0.002 4.4E-08 41.2 5.5 39 56-95 5-44 (249)
210 PRK12939 short chain dehydroge 97.1 0.0023 4.9E-08 41.0 5.7 39 56-95 6-45 (250)
211 PRK07035 short chain dehydroge 97.1 0.0023 5E-08 41.2 5.7 39 56-95 7-46 (252)
212 PRK07478 short chain dehydroge 97.1 0.0022 4.8E-08 41.4 5.6 40 56-96 5-45 (254)
213 PRK06194 hypothetical protein; 97.1 0.0022 4.7E-08 42.2 5.7 39 56-95 5-44 (287)
214 PRK06125 short chain dehydroge 97.1 0.0023 4.9E-08 41.5 5.7 40 56-96 6-46 (259)
215 PRK08265 short chain dehydroge 97.0 0.0024 5.1E-08 41.6 5.7 40 56-96 5-45 (261)
216 PRK13394 3-hydroxybutyrate deh 97.0 0.0026 5.6E-08 41.1 5.8 39 56-95 6-45 (262)
217 PRK06182 short chain dehydroge 97.0 0.0025 5.4E-08 41.7 5.7 40 56-96 2-42 (273)
218 PRK06172 short chain dehydroge 97.0 0.0025 5.3E-08 41.1 5.6 39 56-95 6-45 (253)
219 PRK06196 oxidoreductase; Provi 97.0 0.0024 5.2E-08 42.8 5.7 40 56-96 25-65 (315)
220 PRK05653 fabG 3-ketoacyl-(acyl 97.0 0.0027 5.9E-08 40.4 5.7 40 56-96 4-44 (246)
221 TIGR00507 aroE shikimate 5-deh 97.0 0.0044 9.5E-08 41.0 6.7 42 54-96 114-155 (270)
222 PRK12429 3-hydroxybutyrate deh 97.0 0.0028 6.1E-08 40.8 5.7 40 56-96 3-43 (258)
223 TIGR01963 PHB_DH 3-hydroxybuty 97.0 0.0023 4.9E-08 41.1 5.3 40 57-97 1-41 (255)
224 PRK11705 cyclopropane fatty ac 97.0 0.0042 9E-08 43.2 6.8 55 43-99 153-208 (383)
225 PRK09186 flagellin modificatio 97.0 0.0028 6E-08 40.8 5.6 39 56-95 3-42 (256)
226 PRK05854 short chain dehydroge 97.0 0.0029 6.2E-08 42.5 5.7 40 56-96 13-53 (313)
227 PRK07067 sorbitol dehydrogenas 97.0 0.0028 6.1E-08 41.0 5.5 40 56-96 5-45 (257)
228 PRK05875 short chain dehydroge 97.0 0.0031 6.7E-08 41.2 5.7 39 56-95 6-45 (276)
229 PRK07109 short chain dehydroge 97.0 0.003 6.5E-08 42.9 5.8 40 56-96 7-47 (334)
230 PRK08628 short chain dehydroge 97.0 0.0024 5.3E-08 41.2 5.1 39 56-95 6-45 (258)
231 PRK08085 gluconate 5-dehydroge 96.9 0.0031 6.8E-08 40.7 5.6 39 56-95 8-47 (254)
232 PRK08643 acetoin reductase; Va 96.9 0.0031 6.6E-08 40.7 5.5 39 57-96 2-41 (256)
233 PRK09242 tropinone reductase; 96.9 0.0033 7.2E-08 40.6 5.7 40 56-96 8-48 (257)
234 cd05211 NAD_bind_Glu_Leu_Phe_V 96.9 0.0039 8.4E-08 40.2 5.9 37 55-91 21-57 (217)
235 PRK07454 short chain dehydroge 96.9 0.0037 8.1E-08 40.0 5.9 41 55-96 4-45 (241)
236 PRK12826 3-ketoacyl-(acyl-carr 96.9 0.0029 6.3E-08 40.5 5.4 38 56-94 5-43 (251)
237 PRK07024 short chain dehydroge 96.9 0.0035 7.7E-08 40.6 5.7 39 57-96 2-41 (257)
238 PRK06101 short chain dehydroge 96.9 0.003 6.5E-08 40.6 5.4 39 58-97 2-41 (240)
239 PRK06124 gluconate 5-dehydroge 96.9 0.0036 7.9E-08 40.4 5.8 39 56-95 10-49 (256)
240 PRK06914 short chain dehydroge 96.9 0.0035 7.6E-08 41.0 5.7 38 57-95 3-41 (280)
241 PRK07774 short chain dehydroge 96.9 0.0038 8.2E-08 40.1 5.8 38 56-94 5-43 (250)
242 PRK06181 short chain dehydroge 96.9 0.0033 7.3E-08 40.7 5.5 38 57-95 1-39 (263)
243 COG1748 LYS9 Saccharopine dehy 96.9 0.0029 6.3E-08 44.0 5.4 41 58-98 2-42 (389)
244 PRK07453 protochlorophyllide o 96.9 0.0034 7.5E-08 42.1 5.7 40 56-96 5-45 (322)
245 PF00070 Pyr_redox: Pyridine n 96.9 0.004 8.6E-08 33.5 5.0 33 59-92 1-33 (80)
246 PRK07904 short chain dehydroge 96.9 0.0038 8.2E-08 40.6 5.8 39 54-93 5-45 (253)
247 PRK05876 short chain dehydroge 96.9 0.0035 7.5E-08 41.3 5.6 39 56-95 5-44 (275)
248 PRK05693 short chain dehydroge 96.9 0.0033 7.1E-08 41.1 5.4 38 58-96 2-40 (274)
249 PRK06138 short chain dehydroge 96.9 0.0036 7.8E-08 40.2 5.5 39 56-95 4-43 (252)
250 PRK12769 putative oxidoreducta 96.9 0.0026 5.7E-08 46.9 5.3 36 55-91 325-360 (654)
251 PRK08267 short chain dehydroge 96.9 0.0037 8E-08 40.5 5.5 39 58-97 2-41 (260)
252 PRK06197 short chain dehydroge 96.9 0.0033 7.1E-08 41.9 5.3 39 56-95 15-54 (306)
253 PRK05717 oxidoreductase; Valid 96.9 0.0039 8.5E-08 40.3 5.6 39 56-95 9-48 (255)
254 PF12847 Methyltransf_18: Meth 96.9 0.0038 8.2E-08 35.3 4.9 42 56-99 1-43 (112)
255 PRK08177 short chain dehydroge 96.9 0.0035 7.6E-08 39.8 5.2 39 58-97 2-41 (225)
256 PRK06035 3-hydroxyacyl-CoA deh 96.9 0.0037 8E-08 41.7 5.5 39 58-97 4-42 (291)
257 PRK08264 short chain dehydroge 96.9 0.0041 8.9E-08 39.7 5.5 40 56-95 5-45 (238)
258 PRK08226 short chain dehydroge 96.8 0.0034 7.3E-08 40.7 5.1 38 56-94 5-43 (263)
259 PRK06847 hypothetical protein; 96.8 0.0036 7.8E-08 42.7 5.5 35 57-92 4-38 (375)
260 PRK12823 benD 1,6-dihydroxycyc 96.8 0.0035 7.7E-08 40.5 5.2 36 56-92 7-43 (260)
261 PRK08277 D-mannonate oxidoredu 96.8 0.0045 9.8E-08 40.5 5.7 39 56-95 9-48 (278)
262 PF00106 adh_short: short chai 96.8 0.005 1.1E-07 37.1 5.5 33 58-90 1-34 (167)
263 PRK08163 salicylate hydroxylas 96.8 0.0039 8.5E-08 42.9 5.4 36 56-92 3-38 (396)
264 TIGR03206 benzo_BadH 2-hydroxy 96.8 0.0048 1E-07 39.5 5.6 39 56-95 2-41 (250)
265 PRK12384 sorbitol-6-phosphate 96.8 0.005 1.1E-07 39.8 5.6 38 57-95 2-40 (259)
266 PF01494 FAD_binding_3: FAD bi 96.8 0.0031 6.8E-08 42.1 4.8 34 59-93 3-36 (356)
267 PLN00203 glutamyl-tRNA reducta 96.8 0.0041 8.9E-08 44.9 5.5 42 56-97 265-306 (519)
268 PRK07102 short chain dehydroge 96.8 0.005 1.1E-07 39.5 5.5 37 58-95 2-39 (243)
269 KOG1014|consensus 96.8 0.0036 7.8E-08 42.2 4.8 42 55-98 47-90 (312)
270 PRK09260 3-hydroxybutyryl-CoA 96.8 0.005 1.1E-07 41.0 5.6 40 58-98 2-41 (288)
271 PRK08251 short chain dehydroge 96.8 0.0054 1.2E-07 39.4 5.6 39 57-96 2-41 (248)
272 PRK07666 fabG 3-ketoacyl-(acyl 96.8 0.0059 1.3E-07 39.0 5.7 39 56-95 6-45 (239)
273 PRK06753 hypothetical protein; 96.7 0.0037 8.1E-08 42.6 5.0 33 59-92 2-34 (373)
274 PRK07074 short chain dehydroge 96.7 0.0059 1.3E-07 39.4 5.7 38 57-95 2-40 (257)
275 PRK10538 malonic semialdehyde 96.7 0.0055 1.2E-07 39.5 5.5 37 59-96 2-39 (248)
276 TIGR02469 CbiT precorrin-6Y C5 96.7 0.0098 2.1E-07 34.0 6.1 48 50-98 13-60 (124)
277 PRK08862 short chain dehydroge 96.7 0.0055 1.2E-07 39.3 5.4 41 56-97 4-45 (227)
278 PLN02253 xanthoxin dehydrogena 96.7 0.006 1.3E-07 40.0 5.7 38 56-94 17-55 (280)
279 COG0654 UbiH 2-polyprenyl-6-me 96.7 0.0035 7.6E-08 43.3 4.6 32 58-90 3-34 (387)
280 PRK06935 2-deoxy-D-gluconate 3 96.7 0.0062 1.4E-07 39.4 5.6 34 56-90 14-48 (258)
281 PRK08589 short chain dehydroge 96.7 0.0052 1.1E-07 40.3 5.3 34 56-90 5-39 (272)
282 PRK12742 oxidoreductase; Provi 96.7 0.0058 1.3E-07 38.9 5.4 38 56-94 5-44 (237)
283 PRK07832 short chain dehydroge 96.7 0.0059 1.3E-07 39.9 5.5 37 58-95 1-38 (272)
284 PRK06198 short chain dehydroge 96.7 0.0069 1.5E-07 39.1 5.7 40 56-95 5-45 (260)
285 TIGR01318 gltD_gamma_fam gluta 96.7 0.005 1.1E-07 43.7 5.3 35 56-91 140-174 (467)
286 TIGR02632 RhaD_aldol-ADH rhamn 96.7 0.0071 1.5E-07 44.9 6.2 73 13-96 379-453 (676)
287 PLN02520 bifunctional 3-dehydr 96.6 0.0059 1.3E-07 44.1 5.5 41 56-97 378-418 (529)
288 PRK06113 7-alpha-hydroxysteroi 96.6 0.008 1.7E-07 38.8 5.7 39 56-95 10-49 (255)
289 KOG2304|consensus 96.6 0.0041 8.8E-08 40.6 4.2 46 53-99 7-52 (298)
290 PRK06184 hypothetical protein; 96.6 0.0043 9.3E-08 44.2 4.8 34 58-92 4-37 (502)
291 PRK07856 short chain dehydroge 96.6 0.0063 1.4E-07 39.3 5.2 37 56-93 5-42 (252)
292 PRK08293 3-hydroxybutyryl-CoA 96.6 0.0072 1.6E-07 40.2 5.5 40 58-98 4-43 (287)
293 PF02254 TrkA_N: TrkA-N domain 96.6 0.0089 1.9E-07 34.2 5.3 39 60-99 1-39 (116)
294 PRK10669 putative cation:proto 96.6 0.0061 1.3E-07 44.2 5.5 41 58-99 418-458 (558)
295 PRK06484 short chain dehydroge 96.6 0.0077 1.7E-07 42.9 5.9 41 56-97 268-309 (520)
296 PRK06482 short chain dehydroge 96.6 0.008 1.7E-07 39.3 5.6 39 58-97 3-42 (276)
297 PRK06179 short chain dehydroge 96.6 0.0074 1.6E-07 39.3 5.4 39 56-95 3-42 (270)
298 PF03721 UDPG_MGDP_dh_N: UDP-g 96.6 0.0051 1.1E-07 38.6 4.4 40 59-99 2-41 (185)
299 PF13241 NAD_binding_7: Putati 96.6 0.0031 6.7E-08 35.8 3.2 34 56-90 6-39 (103)
300 PRK07045 putative monooxygenas 96.6 0.0053 1.1E-07 42.2 4.9 34 58-92 6-39 (388)
301 PF02558 ApbA: Ketopantoate re 96.6 0.0066 1.4E-07 36.4 4.8 36 60-97 1-36 (151)
302 PRK12809 putative oxidoreducta 96.6 0.0062 1.3E-07 44.9 5.4 35 56-91 309-343 (639)
303 PRK06719 precorrin-2 dehydroge 96.6 0.0087 1.9E-07 36.6 5.3 32 56-88 12-43 (157)
304 PRK07097 gluconate 5-dehydroge 96.6 0.0091 2E-07 38.9 5.7 39 56-95 9-48 (265)
305 PRK07236 hypothetical protein; 96.6 0.0067 1.4E-07 41.8 5.3 35 57-92 6-40 (386)
306 COG0569 TrkA K+ transport syst 96.6 0.0091 2E-07 38.6 5.6 38 58-96 1-38 (225)
307 PRK07190 hypothetical protein; 96.6 0.0056 1.2E-07 43.8 5.0 35 58-93 6-40 (487)
308 PRK08263 short chain dehydroge 96.6 0.0089 1.9E-07 39.2 5.6 39 57-96 3-42 (275)
309 PRK08244 hypothetical protein; 96.6 0.005 1.1E-07 43.8 4.7 33 59-92 4-36 (493)
310 PRK14967 putative methyltransf 96.6 0.016 3.5E-07 37.1 6.7 48 49-98 29-76 (223)
311 TIGR01470 cysG_Nterm siroheme 96.6 0.0082 1.8E-07 38.3 5.2 35 56-91 8-42 (205)
312 PRK08340 glucose-1-dehydrogena 96.5 0.0079 1.7E-07 39.0 5.3 37 59-96 2-39 (259)
313 PF03807 F420_oxidored: NADP o 96.5 0.012 2.5E-07 32.6 5.3 39 59-98 1-43 (96)
314 PRK15181 Vi polysaccharide bio 96.5 0.0086 1.9E-07 40.7 5.5 47 44-91 2-49 (348)
315 PF01210 NAD_Gly3P_dh_N: NAD-d 96.5 0.0075 1.6E-07 36.7 4.8 39 59-98 1-39 (157)
316 PLN02928 oxidoreductase family 96.5 0.0073 1.6E-07 41.5 5.1 34 56-90 158-191 (347)
317 cd01080 NAD_bind_m-THF_DH_Cycl 96.5 0.028 6.1E-07 34.8 7.3 40 54-94 41-81 (168)
318 KOG1502|consensus 96.5 0.0088 1.9E-07 40.8 5.4 40 56-96 5-45 (327)
319 KOG1207|consensus 96.5 0.007 1.5E-07 38.1 4.5 41 56-97 6-47 (245)
320 PRK06475 salicylate hydroxylas 96.5 0.006 1.3E-07 42.2 4.8 34 58-92 3-36 (400)
321 PRK06523 short chain dehydroge 96.5 0.0077 1.7E-07 39.0 5.0 36 56-92 8-44 (260)
322 PF03486 HI0933_like: HI0933-l 96.5 0.0054 1.2E-07 43.0 4.4 34 59-93 2-35 (409)
323 PRK06398 aldose dehydrogenase; 96.5 0.0086 1.9E-07 38.9 5.2 37 56-93 5-42 (258)
324 PRK06522 2-dehydropantoate 2-r 96.5 0.0095 2.1E-07 39.6 5.5 39 59-98 2-40 (304)
325 PRK12831 putative oxidoreducta 96.5 0.0088 1.9E-07 42.5 5.5 35 55-90 138-172 (464)
326 PLN00141 Tic62-NAD(P)-related 96.5 0.01 2.2E-07 38.5 5.4 38 56-94 16-54 (251)
327 PTZ00079 NADP-specific glutama 96.5 0.021 4.5E-07 40.6 7.2 35 55-90 235-270 (454)
328 PF00899 ThiF: ThiF family; I 96.5 0.012 2.6E-07 34.8 5.3 35 57-91 2-36 (135)
329 PRK05708 2-dehydropantoate 2-r 96.5 0.01 2.2E-07 40.0 5.5 39 58-97 3-41 (305)
330 PLN02986 cinnamyl-alcohol dehy 96.5 0.0096 2.1E-07 39.9 5.4 37 56-93 4-41 (322)
331 TIGR02356 adenyl_thiF thiazole 96.5 0.0094 2E-07 37.9 5.1 35 56-90 20-54 (202)
332 PRK12810 gltD glutamate syntha 96.5 0.0096 2.1E-07 42.3 5.6 36 55-91 141-176 (471)
333 PLN02172 flavin-containing mon 96.5 0.0082 1.8E-07 42.7 5.2 35 56-91 9-43 (461)
334 PRK05868 hypothetical protein; 96.4 0.0077 1.7E-07 41.5 5.0 34 58-92 2-35 (372)
335 PRK08328 hypothetical protein; 96.4 0.01 2.3E-07 38.5 5.3 35 57-91 27-61 (231)
336 PRK07424 bifunctional sterol d 96.4 0.01 2.2E-07 41.6 5.6 39 56-95 177-216 (406)
337 PRK12814 putative NADPH-depend 96.4 0.0096 2.1E-07 44.0 5.7 37 55-92 191-227 (652)
338 TIGR02355 moeB molybdopterin s 96.4 0.0098 2.1E-07 38.8 5.2 36 57-92 24-59 (240)
339 PRK07530 3-hydroxybutyryl-CoA 96.4 0.011 2.4E-07 39.3 5.6 39 58-97 5-43 (292)
340 PRK07066 3-hydroxybutyryl-CoA 96.4 0.011 2.4E-07 40.3 5.5 40 57-97 7-46 (321)
341 PRK08013 oxidoreductase; Provi 96.4 0.0061 1.3E-07 42.2 4.4 34 58-92 4-37 (400)
342 PRK05884 short chain dehydroge 96.4 0.01 2.2E-07 37.9 5.2 37 59-96 2-39 (223)
343 PRK12936 3-ketoacyl-(acyl-carr 96.4 0.012 2.7E-07 37.5 5.6 40 56-96 5-45 (245)
344 PLN02896 cinnamyl-alcohol dehy 96.4 0.012 2.7E-07 39.9 5.8 40 54-94 7-47 (353)
345 PRK05565 fabG 3-ketoacyl-(acyl 96.4 0.011 2.5E-07 37.6 5.4 38 57-95 5-44 (247)
346 COG2518 Pcm Protein-L-isoaspar 96.4 0.025 5.5E-07 36.3 6.8 65 32-99 48-112 (209)
347 PRK07533 enoyl-(acyl carrier p 96.4 0.0095 2E-07 38.8 5.0 37 56-93 9-48 (258)
348 PRK07538 hypothetical protein; 96.4 0.0078 1.7E-07 41.8 4.8 33 59-92 2-34 (413)
349 TIGR01832 kduD 2-deoxy-D-gluco 96.4 0.013 2.9E-07 37.5 5.6 35 56-91 4-39 (248)
350 PRK06130 3-hydroxybutyryl-CoA 96.4 0.015 3.2E-07 39.0 6.0 40 58-98 5-44 (311)
351 PRK07775 short chain dehydroge 96.4 0.013 2.9E-07 38.4 5.7 39 56-95 9-48 (274)
352 PRK07364 2-octaprenyl-6-methox 96.4 0.0061 1.3E-07 42.2 4.3 35 57-92 18-52 (415)
353 PLN02686 cinnamoyl-CoA reducta 96.4 0.011 2.5E-07 40.6 5.5 40 54-94 50-90 (367)
354 PLN02583 cinnamoyl-CoA reducta 96.4 0.011 2.4E-07 39.3 5.3 34 56-90 5-39 (297)
355 PRK13243 glyoxylate reductase; 96.4 0.01 2.2E-07 40.5 5.2 37 56-93 149-185 (333)
356 PRK09126 hypothetical protein; 96.4 0.0076 1.7E-07 41.4 4.6 34 58-92 4-37 (392)
357 PRK07806 short chain dehydroge 96.4 0.011 2.3E-07 38.0 5.0 35 56-91 5-40 (248)
358 PRK07502 cyclohexadienyl dehyd 96.4 0.014 2.9E-07 39.3 5.7 42 57-98 6-48 (307)
359 PRK12779 putative bifunctional 96.4 0.009 2E-07 46.0 5.3 36 55-91 304-339 (944)
360 PRK06126 hypothetical protein; 96.4 0.0073 1.6E-07 43.5 4.6 34 58-92 8-41 (545)
361 PRK06953 short chain dehydroge 96.4 0.012 2.6E-07 37.3 5.2 39 58-97 2-41 (222)
362 PRK08063 enoyl-(acyl carrier p 96.4 0.014 2.9E-07 37.5 5.5 38 56-94 3-42 (250)
363 PRK12367 short chain dehydroge 96.4 0.014 3E-07 38.0 5.5 35 56-91 13-48 (245)
364 PRK06484 short chain dehydroge 96.4 0.012 2.5E-07 42.0 5.6 40 56-96 4-44 (520)
365 TIGR02360 pbenz_hydroxyl 4-hyd 96.4 0.0093 2E-07 41.3 4.9 34 58-92 3-36 (390)
366 TIGR02622 CDP_4_6_dhtase CDP-g 96.4 0.011 2.5E-07 40.1 5.3 37 56-93 3-40 (349)
367 PLN02545 3-hydroxybutyryl-CoA 96.3 0.017 3.6E-07 38.6 6.0 39 57-96 4-42 (295)
368 TIGR01988 Ubi-OHases Ubiquinon 96.3 0.0074 1.6E-07 41.1 4.4 32 60-92 2-33 (385)
369 PRK06505 enoyl-(acyl carrier p 96.3 0.01 2.2E-07 39.1 4.8 36 56-92 6-44 (271)
370 PRK06129 3-hydroxyacyl-CoA deh 96.3 0.013 2.8E-07 39.4 5.4 38 58-96 3-40 (308)
371 PRK01438 murD UDP-N-acetylmura 96.3 0.014 3.1E-07 41.4 5.9 36 55-91 14-49 (480)
372 PRK06171 sorbitol-6-phosphate 96.3 0.01 2.3E-07 38.5 4.8 37 56-93 8-45 (266)
373 TIGR02032 GG-red-SF geranylger 96.3 0.0093 2E-07 39.0 4.6 33 59-92 2-34 (295)
374 PRK06718 precorrin-2 dehydroge 96.3 0.015 3.2E-07 37.1 5.3 34 56-90 9-42 (202)
375 PLN02989 cinnamyl-alcohol dehy 96.3 0.011 2.4E-07 39.6 5.0 37 56-93 4-41 (325)
376 PRK06834 hypothetical protein; 96.3 0.0097 2.1E-07 42.5 4.9 34 58-92 4-37 (488)
377 PRK06114 short chain dehydroge 96.3 0.014 3E-07 37.8 5.2 36 56-92 7-43 (254)
378 TIGR02028 ChlP geranylgeranyl 96.3 0.0099 2.2E-07 41.3 4.8 33 59-92 2-34 (398)
379 PRK07577 short chain dehydroge 96.3 0.012 2.7E-07 37.3 5.0 37 56-93 2-39 (234)
380 KOG0725|consensus 96.3 0.015 3.3E-07 38.6 5.5 42 55-97 6-48 (270)
381 PF13738 Pyr_redox_3: Pyridine 96.3 0.0094 2E-07 37.1 4.3 31 61-91 1-31 (203)
382 PF00743 FMO-like: Flavin-bind 96.3 0.0089 1.9E-07 43.3 4.6 34 58-92 2-35 (531)
383 PRK07819 3-hydroxybutyryl-CoA 96.3 0.015 3.2E-07 38.9 5.4 39 58-97 6-44 (286)
384 PRK03562 glutathione-regulated 96.3 0.014 3E-07 43.0 5.7 42 57-99 400-441 (621)
385 PRK06720 hypothetical protein; 96.3 0.02 4.4E-07 35.3 5.7 38 56-94 15-53 (169)
386 PRK05650 short chain dehydroge 96.3 0.015 3.3E-07 37.9 5.4 37 58-95 1-38 (270)
387 PF13450 NAD_binding_8: NAD(P) 96.3 0.013 2.9E-07 30.8 4.1 30 62-92 1-30 (68)
388 PRK08303 short chain dehydroge 96.3 0.016 3.4E-07 38.9 5.5 34 56-90 7-41 (305)
389 COG0644 FixC Dehydrogenases (f 96.2 0.0097 2.1E-07 41.3 4.6 33 59-92 5-37 (396)
390 COG0334 GdhA Glutamate dehydro 96.2 0.035 7.6E-07 39.0 7.2 45 47-92 196-241 (411)
391 PRK08410 2-hydroxyacid dehydro 96.2 0.012 2.6E-07 39.8 4.9 34 56-90 144-177 (311)
392 PRK06940 short chain dehydroge 96.2 0.016 3.5E-07 38.1 5.4 38 57-96 2-39 (275)
393 PRK07340 ornithine cyclodeamin 96.2 0.053 1.2E-06 36.6 7.9 46 52-97 120-166 (304)
394 PRK03659 glutathione-regulated 96.2 0.015 3.2E-07 42.7 5.5 42 57-99 400-441 (601)
395 COG0686 Ald Alanine dehydrogen 96.2 0.0075 1.6E-07 41.0 3.7 42 57-99 168-209 (371)
396 PRK06483 dihydromonapterin red 96.2 0.016 3.4E-07 37.0 5.1 36 57-93 2-38 (236)
397 PLN02657 3,8-divinyl protochlo 96.2 0.016 3.4E-07 40.3 5.4 42 51-93 54-96 (390)
398 PRK08243 4-hydroxybenzoate 3-m 96.2 0.012 2.7E-07 40.6 4.9 34 58-92 3-36 (392)
399 PRK12480 D-lactate dehydrogena 96.2 0.017 3.7E-07 39.4 5.5 37 56-93 145-181 (330)
400 TIGR02415 23BDH acetoin reduct 96.2 0.019 4E-07 36.9 5.5 36 58-94 1-37 (254)
401 PRK06603 enoyl-(acyl carrier p 96.2 0.015 3.2E-07 37.9 5.0 35 56-91 7-44 (260)
402 PRK05690 molybdopterin biosynt 96.2 0.018 4E-07 37.7 5.4 35 56-90 31-65 (245)
403 PRK08849 2-octaprenyl-3-methyl 96.2 0.012 2.5E-07 40.6 4.6 32 59-91 5-36 (384)
404 TIGR02354 thiF_fam2 thiamine b 96.2 0.017 3.7E-07 36.7 5.1 34 57-90 21-54 (200)
405 PLN02662 cinnamyl-alcohol dehy 96.2 0.014 3E-07 39.0 4.8 37 56-93 3-40 (322)
406 PRK06079 enoyl-(acyl carrier p 96.2 0.018 3.9E-07 37.3 5.3 35 56-91 6-43 (252)
407 PRK07574 formate dehydrogenase 96.1 0.017 3.7E-07 40.3 5.4 35 56-91 191-225 (385)
408 PRK06141 ornithine cyclodeamin 96.1 0.058 1.3E-06 36.5 7.8 45 53-97 121-166 (314)
409 PRK14982 acyl-ACP reductase; P 96.1 0.021 4.6E-07 39.2 5.7 43 55-97 153-197 (340)
410 PRK07494 2-octaprenyl-6-methox 96.1 0.011 2.3E-07 40.7 4.3 34 58-92 8-41 (388)
411 PRK05557 fabG 3-ketoacyl-(acyl 96.1 0.019 4.1E-07 36.5 5.2 36 56-92 4-40 (248)
412 PRK08132 FAD-dependent oxidore 96.1 0.011 2.5E-07 42.6 4.6 34 58-92 24-57 (547)
413 TIGR00406 prmA ribosomal prote 96.1 0.072 1.6E-06 35.6 8.1 44 54-99 157-200 (288)
414 PRK06183 mhpA 3-(3-hydroxyphen 96.1 0.012 2.5E-07 42.5 4.6 35 57-92 10-44 (538)
415 PRK07588 hypothetical protein; 96.1 0.014 3E-07 40.2 4.9 33 59-92 2-34 (391)
416 PRK05808 3-hydroxybutyryl-CoA 96.1 0.022 4.7E-07 37.8 5.6 38 58-96 4-41 (282)
417 PRK15469 ghrA bifunctional gly 96.1 0.018 3.9E-07 39.0 5.2 36 56-92 135-170 (312)
418 PRK07417 arogenate dehydrogena 96.1 0.019 4E-07 38.1 5.2 39 59-98 2-40 (279)
419 PRK08416 7-alpha-hydroxysteroi 96.1 0.022 4.8E-07 37.0 5.5 38 56-94 7-46 (260)
420 PRK00141 murD UDP-N-acetylmura 96.1 0.023 4.9E-07 40.5 5.9 39 54-93 12-50 (473)
421 PRK09310 aroDE bifunctional 3- 96.1 0.036 7.8E-07 39.7 6.8 40 56-96 331-370 (477)
422 PF07991 IlvN: Acetohydroxy ac 96.1 0.03 6.5E-07 34.6 5.6 42 56-98 3-45 (165)
423 PRK06185 hypothetical protein; 96.1 0.014 3.1E-07 40.3 4.8 34 57-91 6-39 (407)
424 cd00757 ThiF_MoeB_HesA_family 96.1 0.02 4.3E-07 37.0 5.1 34 57-90 21-54 (228)
425 PLN02650 dihydroflavonol-4-red 96.1 0.017 3.7E-07 39.2 5.1 38 56-94 4-42 (351)
426 PRK13943 protein-L-isoaspartat 96.1 0.034 7.4E-07 37.9 6.4 50 48-98 72-122 (322)
427 PRK06567 putative bifunctional 96.1 0.017 3.6E-07 44.7 5.4 35 55-90 381-415 (1028)
428 TIGR01289 LPOR light-dependent 96.1 0.023 5E-07 38.2 5.6 38 57-95 3-42 (314)
429 PRK08773 2-octaprenyl-3-methyl 96.1 0.014 3E-07 40.2 4.6 34 57-91 6-39 (392)
430 PTZ00188 adrenodoxin reductase 96.1 0.021 4.5E-07 41.2 5.5 36 55-91 37-73 (506)
431 PRK12475 thiamine/molybdopteri 96.1 0.019 4.1E-07 39.4 5.2 35 57-91 24-58 (338)
432 PRK09135 pteridine reductase; 96.1 0.022 4.7E-07 36.4 5.2 34 56-90 5-39 (249)
433 TIGR01316 gltA glutamate synth 96.1 0.021 4.6E-07 40.4 5.6 35 55-90 131-165 (449)
434 PRK12743 oxidoreductase; Provi 96.1 0.024 5.3E-07 36.7 5.5 32 57-89 2-34 (256)
435 PRK06924 short chain dehydroge 96.1 0.022 4.8E-07 36.6 5.3 33 58-91 2-35 (251)
436 PRK12770 putative glutamate sy 96.1 0.023 5E-07 38.8 5.6 37 54-91 15-51 (352)
437 PRK12481 2-deoxy-D-gluconate 3 96.0 0.024 5.3E-07 36.7 5.5 35 56-91 7-42 (251)
438 PRK06932 glycerate dehydrogena 96.0 0.015 3.3E-07 39.4 4.6 34 56-90 146-179 (314)
439 PRK09853 putative selenate red 96.0 0.016 3.5E-07 44.9 5.2 36 55-91 537-572 (1019)
440 TIGR01984 UbiH 2-polyprenyl-6- 96.0 0.012 2.6E-07 40.2 4.2 32 60-92 2-34 (382)
441 cd05191 NAD_bind_amino_acid_DH 96.0 0.036 7.8E-07 30.3 5.4 35 55-89 21-55 (86)
442 COG0026 PurK Phosphoribosylami 96.0 0.017 3.6E-07 40.0 4.8 34 58-92 2-35 (375)
443 PRK08223 hypothetical protein; 96.0 0.019 4.1E-07 38.6 4.9 36 56-91 26-61 (287)
444 PRK13984 putative oxidoreducta 96.0 0.019 4.2E-07 41.9 5.4 37 54-91 280-316 (604)
445 PRK08644 thiamine biosynthesis 96.0 0.022 4.8E-07 36.5 5.1 35 56-90 27-61 (212)
446 PLN02927 antheraxanthin epoxid 96.0 0.016 3.6E-07 43.1 5.1 37 54-91 78-114 (668)
447 PRK07791 short chain dehydroge 96.0 0.025 5.5E-07 37.4 5.6 36 55-91 4-40 (286)
448 PF02719 Polysacc_synt_2: Poly 96.0 0.018 3.9E-07 38.8 4.8 38 60-97 1-39 (293)
449 PRK07608 ubiquinone biosynthes 96.0 0.015 3.2E-07 39.9 4.6 34 58-92 6-39 (388)
450 TIGR00292 thiazole biosynthesi 96.0 0.018 3.8E-07 37.9 4.7 33 58-91 22-54 (254)
451 PRK06436 glycerate dehydrogena 96.0 0.019 4.2E-07 38.7 5.0 35 56-91 121-155 (303)
452 PRK09496 trkA potassium transp 96.0 0.026 5.7E-07 39.6 5.8 43 55-98 229-271 (453)
453 PRK09496 trkA potassium transp 96.0 0.023 5E-07 39.9 5.6 39 59-98 2-40 (453)
454 cd01483 E1_enzyme_family Super 96.0 0.022 4.8E-07 33.9 4.8 32 59-90 1-32 (143)
455 PRK15116 sulfur acceptor prote 96.0 0.022 4.7E-07 37.9 5.1 35 56-90 29-63 (268)
456 PRK08762 molybdopterin biosynt 96.0 0.023 4.9E-07 39.4 5.4 35 56-90 134-168 (376)
457 PRK07201 short chain dehydroge 96.0 0.024 5.2E-07 41.6 5.8 39 57-96 371-410 (657)
458 PRK05855 short chain dehydroge 96.0 0.025 5.4E-07 40.5 5.8 40 56-96 314-354 (582)
459 PRK06487 glycerate dehydrogena 96.0 0.018 3.9E-07 39.1 4.8 34 56-90 147-180 (317)
460 PRK10157 putative oxidoreducta 96.0 0.016 3.5E-07 40.7 4.7 33 58-91 6-38 (428)
461 PRK12746 short chain dehydroge 96.0 0.026 5.7E-07 36.3 5.4 38 56-94 5-44 (254)
462 PRK08294 phenol 2-monooxygenas 96.0 0.011 2.5E-07 43.5 4.1 36 57-93 32-68 (634)
463 CHL00194 ycf39 Ycf39; Provisio 96.0 0.024 5.3E-07 38.0 5.4 36 59-95 2-38 (317)
464 PRK08278 short chain dehydroge 96.0 0.022 4.8E-07 37.4 5.1 36 56-92 5-41 (273)
465 COG0111 SerA Phosphoglycerate 96.0 0.02 4.4E-07 39.1 5.0 32 57-89 142-173 (324)
466 TIGR02992 ectoine_eutC ectoine 96.0 0.074 1.6E-06 36.2 7.7 43 55-97 127-170 (326)
467 PRK08291 ectoine utilization p 96.0 0.08 1.7E-06 36.1 7.9 43 55-97 130-173 (330)
468 PRK05714 2-octaprenyl-3-methyl 96.0 0.012 2.7E-07 40.6 4.0 33 58-91 3-35 (405)
469 TIGR03219 salicylate_mono sali 96.0 0.018 3.9E-07 40.0 4.8 33 59-92 2-35 (414)
470 PRK04176 ribulose-1,5-biphosph 96.0 0.018 4E-07 37.9 4.6 33 58-91 26-58 (257)
471 PRK08317 hypothetical protein; 95.9 0.042 9E-07 34.9 6.2 48 50-98 13-61 (241)
472 TIGR02023 BchP-ChlP geranylger 95.9 0.019 4.2E-07 39.6 4.9 31 59-90 2-32 (388)
473 TIGR03315 Se_ygfK putative sel 95.9 0.019 4E-07 44.6 5.2 35 56-91 536-570 (1012)
474 TIGR01317 GOGAT_sm_gam glutama 95.9 0.024 5.2E-07 40.5 5.5 36 55-91 141-176 (485)
475 cd01487 E1_ThiF_like E1_ThiF_l 95.9 0.024 5.1E-07 35.2 4.8 33 59-91 1-33 (174)
476 PLN03139 formate dehydrogenase 95.9 0.022 4.8E-07 39.8 5.1 35 56-91 198-232 (386)
477 PRK12921 2-dehydropantoate 2-r 95.9 0.026 5.7E-07 37.5 5.4 38 59-98 2-39 (305)
478 KOG0029|consensus 95.9 0.02 4.2E-07 41.3 5.0 35 55-90 13-47 (501)
479 PRK08642 fabG 3-ketoacyl-(acyl 95.9 0.029 6.4E-07 36.0 5.4 37 56-93 4-42 (253)
480 PRK08415 enoyl-(acyl carrier p 95.9 0.023 4.9E-07 37.5 5.0 35 56-91 4-41 (274)
481 PRK07688 thiamine/molybdopteri 95.9 0.028 6.2E-07 38.5 5.5 35 57-91 24-58 (339)
482 PRK08219 short chain dehydroge 95.9 0.031 6.8E-07 35.2 5.4 37 57-95 3-40 (227)
483 PF07992 Pyr_redox_2: Pyridine 95.9 0.024 5.1E-07 35.2 4.8 32 59-91 1-32 (201)
484 PRK08261 fabG 3-ketoacyl-(acyl 95.9 0.029 6.2E-07 39.5 5.6 34 56-90 209-243 (450)
485 PRK14618 NAD(P)H-dependent gly 95.9 0.028 6E-07 38.1 5.4 41 57-98 4-44 (328)
486 PRK01368 murD UDP-N-acetylmura 95.9 0.018 3.9E-07 40.9 4.6 35 56-92 5-39 (454)
487 PRK06617 2-octaprenyl-6-methox 95.9 0.016 3.5E-07 39.8 4.3 31 59-90 3-33 (374)
488 PRK12747 short chain dehydroge 95.9 0.032 7E-07 35.9 5.5 37 56-93 3-41 (252)
489 cd01076 NAD_bind_1_Glu_DH NAD( 95.9 0.035 7.6E-07 36.0 5.6 34 55-89 29-63 (227)
490 KOG1399|consensus 95.9 0.016 3.5E-07 41.2 4.3 34 57-91 6-39 (448)
491 TIGR01381 E1_like_apg7 E1-like 95.9 0.022 4.7E-07 42.2 5.0 33 57-89 338-370 (664)
492 PRK12825 fabG 3-ketoacyl-(acyl 95.9 0.035 7.5E-07 35.3 5.6 34 56-90 5-39 (249)
493 PRK12937 short chain dehydroge 95.9 0.033 7.1E-07 35.6 5.4 34 56-90 4-38 (245)
494 PRK12778 putative bifunctional 95.9 0.026 5.6E-07 42.4 5.6 35 55-90 429-463 (752)
495 PLN02852 ferredoxin-NADP+ redu 95.9 0.025 5.5E-07 40.6 5.3 36 55-91 24-61 (491)
496 COG0281 SfcA Malic enzyme [Ene 95.9 0.064 1.4E-06 37.8 7.0 64 27-90 168-234 (432)
497 PRK05597 molybdopterin biosynt 95.8 0.028 6.2E-07 38.7 5.4 36 56-91 27-62 (355)
498 PRK06463 fabG 3-ketoacyl-(acyl 95.8 0.035 7.7E-07 35.8 5.6 34 56-90 6-40 (255)
499 PRK00676 hemA glutamyl-tRNA re 95.8 0.067 1.5E-06 36.8 7.1 41 53-93 170-210 (338)
500 cd05313 NAD_bind_2_Glu_DH NAD( 95.8 0.074 1.6E-06 35.2 7.0 32 55-87 36-67 (254)
No 1
>KOG0024|consensus
Probab=99.94 E-value=1.3e-26 Score=152.52 Aligned_cols=100 Identities=60% Similarity=1.030 Sum_probs=96.4
Q ss_pred CeeecCCCCCCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC
Q psy16556 1 MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYG 80 (100)
Q Consensus 1 ~~~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g 80 (100)
+.|++.++.+|++++|++.+++.++|+||++|+|++|+++|+++++||++++++++|++|||+|+||+|+.+...||.+|
T Consensus 114 m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G 193 (354)
T KOG0024|consen 114 MVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG 193 (354)
T ss_pred cccccCCCcCCceEEEEEechHheeeCCCCCchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecChhhhhhhhcC
Q psy16556 81 ARVICVCKYVGIRIFPYKKI 100 (100)
Q Consensus 81 ~~~v~~~~~~~~~~~~~~~l 100 (100)
+.+|++++..+.|+++++++
T Consensus 194 A~~VVi~d~~~~Rle~Ak~~ 213 (354)
T KOG0024|consen 194 ASDVVITDLVANRLELAKKF 213 (354)
T ss_pred CCcEEEeecCHHHHHHHHHh
Confidence 99999999999999999874
No 2
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=99.92 E-value=4.5e-25 Score=147.34 Aligned_cols=96 Identities=26% Similarity=0.319 Sum_probs=89.9
Q ss_pred eecCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q psy16556 3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA 81 (100)
Q Consensus 3 ~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~ 81 (100)
+.|+. .+|+|+||+++|+++++++|+++++++||.+ ++..|+|++++..+++||++|+|+|.|++|++++|+|+.+|+
T Consensus 113 ~~gy~-~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga 191 (339)
T COG1064 113 ITGYT-TDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA 191 (339)
T ss_pred cccee-ecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEeeehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC
Confidence 34554 4899999999999999999999999999988 999999999999999999999999999999999999999998
Q ss_pred cEEEEEecChhhhhhhhcC
Q psy16556 82 RVICVCKYVGIRIFPYKKI 100 (100)
Q Consensus 82 ~~v~~~~~~~~~~~~~~~l 100 (100)
+ |++++++++|++++++|
T Consensus 192 ~-Via~~~~~~K~e~a~~l 209 (339)
T COG1064 192 E-VIAITRSEEKLELAKKL 209 (339)
T ss_pred e-EEEEeCChHHHHHHHHh
Confidence 8 99999999999999875
No 3
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=99.88 E-value=6.8e-22 Score=132.68 Aligned_cols=91 Identities=31% Similarity=0.397 Sum_probs=83.1
Q ss_pred CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEE
Q psy16556 9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVIC 85 (100)
Q Consensus 9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~ 85 (100)
.+|+|+||+++|++.++++|+++++++|+.+ ..+.|||+++ +..++++|++|||+|+ |++|++++|++|.+|++ ++
T Consensus 93 ~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~-~v 171 (326)
T COG0604 93 RDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGAT-VV 171 (326)
T ss_pred CCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCc-EE
Confidence 3799999999999999999999999999999 9999999999 6688999999999997 99999999999999986 77
Q ss_pred EEecChhhhhhhhcC
Q psy16556 86 VCKYVGIRIFPYKKI 100 (100)
Q Consensus 86 ~~~~~~~~~~~~~~l 100 (100)
++.++++|.++++++
T Consensus 172 ~~~~s~~k~~~~~~l 186 (326)
T COG0604 172 AVVSSSEKLELLKEL 186 (326)
T ss_pred EEecCHHHHHHHHhc
Confidence 777888888877654
No 4
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=99.86 E-value=6.3e-21 Score=128.28 Aligned_cols=92 Identities=26% Similarity=0.404 Sum_probs=84.4
Q ss_pred CCCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556 9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK 88 (100)
Q Consensus 9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~ 88 (100)
.+|+|+||+++|++.++++|++++++++++..+++++|++++.....+|++|+|+|+|++|++++|+++.+|+++|++++
T Consensus 122 ~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~a~~al~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~ 201 (343)
T PRK09880 122 VDGGFTRYKVVDTAQCIPYPEKADEKVMAFAEPLAVAIHAAHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCAD 201 (343)
T ss_pred CCCceeeeEEechHHeEECCCCCCHHHHHhhcHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEe
Confidence 36999999999999999999999998888778899999999777777899999999999999999999999997699999
Q ss_pred cChhhhhhhhcC
Q psy16556 89 YVGIRIFPYKKI 100 (100)
Q Consensus 89 ~~~~~~~~~~~l 100 (100)
++++|+++++++
T Consensus 202 ~~~~~~~~a~~l 213 (343)
T PRK09880 202 VSPRSLSLAREM 213 (343)
T ss_pred CCHHHHHHHHHc
Confidence 999999998764
No 5
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.84 E-value=4.1e-20 Score=121.44 Aligned_cols=92 Identities=25% Similarity=0.175 Sum_probs=83.0
Q ss_pred CCCcccceEEecCC-ceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556 9 HHGNLSQFYKHAAD-FCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 9 ~~G~~ae~~~~~~~-~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~ 86 (100)
.+|+|+||+++|++ .++++|+++++++++.+ +...|+|++++.....+|++|+|+|+|++|++++|++|.+|+++|++
T Consensus 71 ~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~ 150 (280)
T TIGR03366 71 LSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVA 150 (280)
T ss_pred ccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 36999999999997 69999999999999887 78899999997777779999999999999999999999999987888
Q ss_pred EecChhhhhhhhcC
Q psy16556 87 CKYVGIRIFPYKKI 100 (100)
Q Consensus 87 ~~~~~~~~~~~~~l 100 (100)
++++++|+++++++
T Consensus 151 ~~~~~~r~~~a~~~ 164 (280)
T TIGR03366 151 ADPSPDRRELALSF 164 (280)
T ss_pred ECCCHHHHHHHHHc
Confidence 88899999888753
No 6
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=99.83 E-value=4.2e-20 Score=124.37 Aligned_cols=90 Identities=26% Similarity=0.293 Sum_probs=80.1
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHh---cCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCcEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKR---SGVGLGTSVLVLSAGPIGLVTILAAKA-YGARVIC 85 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~---~~~~~g~~vli~G~G~~G~~~~~l~~~-~g~~~v~ 85 (100)
+|+|+||+++|++.++++|+++++++|+++++.+++++++.. ..+++|++|+|+|+|++|++++|+++. +|..+|+
T Consensus 114 ~G~~aey~~v~~~~~~~vP~~l~~~~aa~~~~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi 193 (341)
T cd08237 114 DGFMQDYVFLPPDRLVKLPDNVDPEVAAFTELVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLV 193 (341)
T ss_pred CCceEEEEEEchHHeEECCCCCChHHhhhhchHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEE
Confidence 699999999999999999999999999877999999999842 456889999999999999999999996 6655599
Q ss_pred EEecChhhhhhhhc
Q psy16556 86 VCKYVGIRIFPYKK 99 (100)
Q Consensus 86 ~~~~~~~~~~~~~~ 99 (100)
+++++++|++++++
T Consensus 194 ~~~~~~~k~~~a~~ 207 (341)
T cd08237 194 VFGKHQEKLDLFSF 207 (341)
T ss_pred EEeCcHhHHHHHhh
Confidence 99999999988764
No 7
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=99.83 E-value=5.1e-20 Score=125.03 Aligned_cols=91 Identities=25% Similarity=0.229 Sum_probs=83.8
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
+|+|+||+++|++.++++|+++++++++.+ ++..++|+++ +..++++|++|+|+|+|++|++++|+++.+|+++|+++
T Consensus 137 ~G~~aey~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~ 216 (368)
T TIGR02818 137 CSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAI 216 (368)
T ss_pred CccceeeEEechhheEECCCCCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 379999999999999999999999999988 7899999998 77899999999999999999999999999999659999
Q ss_pred ecChhhhhhhhcC
Q psy16556 88 KYVGIRIFPYKKI 100 (100)
Q Consensus 88 ~~~~~~~~~~~~l 100 (100)
+++++|+++++++
T Consensus 217 ~~~~~~~~~a~~~ 229 (368)
T TIGR02818 217 DINPAKFELAKKL 229 (368)
T ss_pred cCCHHHHHHHHHh
Confidence 9999999887653
No 8
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=99.83 E-value=7.2e-20 Score=122.77 Aligned_cols=90 Identities=22% Similarity=0.181 Sum_probs=84.1
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK 88 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~ 88 (100)
+|+|+||+.+|++.++++|+++++++++.+ ++..|+|+++...++++|++|+|+|+|++|++++|+++.+|++ |++++
T Consensus 118 ~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~-vi~~~ 196 (329)
T TIGR02822 118 DGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALLRASLPPGGRLGLYGFGGSAHLTAQVALAQGAT-VHVMT 196 (329)
T ss_pred CCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCe-EEEEe
Confidence 699999999999999999999999998877 8899999999778899999999999999999999999999998 99999
Q ss_pred cChhhhhhhhcC
Q psy16556 89 YVGIRIFPYKKI 100 (100)
Q Consensus 89 ~~~~~~~~~~~l 100 (100)
++++|+++++++
T Consensus 197 ~~~~~~~~a~~~ 208 (329)
T TIGR02822 197 RGAAARRLALAL 208 (329)
T ss_pred CChHHHHHHHHh
Confidence 999999998764
No 9
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=99.82 E-value=1.2e-19 Score=121.59 Aligned_cols=90 Identities=31% Similarity=0.440 Sum_probs=84.1
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK 88 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~ 88 (100)
+|+|+||+++|++.++++|+++++++++.+ +++.|+|+++...++++|++|+|+|+|++|++++|+++.+|+++|++++
T Consensus 116 ~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~ 195 (339)
T cd08239 116 DGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHALRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVD 195 (339)
T ss_pred CCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence 699999999999999999999999999888 8999999999878899999999999999999999999999998788899
Q ss_pred cChhhhhhhhc
Q psy16556 89 YVGIRIFPYKK 99 (100)
Q Consensus 89 ~~~~~~~~~~~ 99 (100)
++++|++++++
T Consensus 196 ~~~~~~~~~~~ 206 (339)
T cd08239 196 PSPERLELAKA 206 (339)
T ss_pred CCHHHHHHHHH
Confidence 99999988765
No 10
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=99.82 E-value=1.6e-19 Score=122.65 Aligned_cols=90 Identities=24% Similarity=0.339 Sum_probs=83.2
Q ss_pred CcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556 11 GNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK 88 (100)
Q Consensus 11 G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~ 88 (100)
|+|+||+++|++.++++|+++++++++.+ ++..++|+++ +..++++|++|+|.|+|++|++++|+++..|+++|++++
T Consensus 144 G~~aey~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~ 223 (371)
T cd08281 144 SAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVD 223 (371)
T ss_pred ccceeeEEecccceEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 79999999999999999999999999988 7889999987 778899999999999999999999999999996599999
Q ss_pred cChhhhhhhhcC
Q psy16556 89 YVGIRIFPYKKI 100 (100)
Q Consensus 89 ~~~~~~~~~~~l 100 (100)
++++|+++++++
T Consensus 224 ~~~~r~~~a~~~ 235 (371)
T cd08281 224 LNEDKLALAREL 235 (371)
T ss_pred CCHHHHHHHHHc
Confidence 999999988753
No 11
>PLN02740 Alcohol dehydrogenase-like
Probab=99.81 E-value=1.6e-19 Score=123.08 Aligned_cols=91 Identities=22% Similarity=0.280 Sum_probs=83.8
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
+|+|+||+++|++.++++|+++++++++.+ +++.|+|+++ +..++++|++|+|+|+|++|++++|+++.+|+++|+++
T Consensus 150 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~ 229 (381)
T PLN02740 150 TSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGV 229 (381)
T ss_pred CccceeEEEEehHHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEE
Confidence 599999999999999999999999998887 7889999987 67899999999999999999999999999999659999
Q ss_pred ecChhhhhhhhcC
Q psy16556 88 KYVGIRIFPYKKI 100 (100)
Q Consensus 88 ~~~~~~~~~~~~l 100 (100)
+++++|+++++++
T Consensus 230 ~~~~~r~~~a~~~ 242 (381)
T PLN02740 230 DINPEKFEKGKEM 242 (381)
T ss_pred cCChHHHHHHHHc
Confidence 9999999988753
No 12
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.81 E-value=2.5e-19 Score=121.32 Aligned_cols=91 Identities=38% Similarity=0.560 Sum_probs=78.2
Q ss_pred CCCcccceEEecCCceEE-CCCCCChhhhhcchhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556 9 HHGNLSQFYKHAADFCYK-LPDHLTLEEGALLEPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 9 ~~G~~ae~~~~~~~~~~~-~p~~~~~~~aa~~~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~ 86 (100)
.+|+|+||+.+|.+++++ +||+++++.+++.+++++++++. .....+++.+|+|+|+||+|++++++++..|+.+|++
T Consensus 119 ~~G~~aEyv~vp~~~~~~~~pd~~~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv 198 (350)
T COG1063 119 IDGGFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIV 198 (350)
T ss_pred CCCceEEEEEeccccCeecCCCCCChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEE
Confidence 579999999999765555 58888777777779999998885 4555555559999999999999999999999998999
Q ss_pred EecChhhhhhhhc
Q psy16556 87 CKYVGIRIFPYKK 99 (100)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (100)
+|.+++|++++++
T Consensus 199 ~d~~~~Rl~~A~~ 211 (350)
T COG1063 199 VDRSPERLELAKE 211 (350)
T ss_pred eCCCHHHHHHHHH
Confidence 9999999999976
No 13
>KOG0023|consensus
Probab=99.80 E-value=8.2e-20 Score=120.55 Aligned_cols=88 Identities=27% Similarity=0.352 Sum_probs=80.1
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK 88 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~ 88 (100)
+|+|+||+++++.++.+||+++++++||.+ ++..|+|.++...++.||+++-|.|+|++|.+++|++|+||.+ |++++
T Consensus 134 ~ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLCaGITvYspLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~r-V~vis 212 (360)
T KOG0023|consen 134 QGGFQEYAVVDEVFAIKIPENLPLASAAPLLCAGITVYSPLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMR-VTVIS 212 (360)
T ss_pred cCccceeEEEeeeeEEECCCCCChhhccchhhcceEEeehhHHcCCCCCcEEEEecCcccchHHHHHHHHhCcE-EEEEe
Confidence 466999999999999999999999999977 9999999999999999999999999977999999999999999 99998
Q ss_pred cCh-hhhhhhh
Q psy16556 89 YVG-IRIFPYK 98 (100)
Q Consensus 89 ~~~-~~~~~~~ 98 (100)
+++ .|.+.++
T Consensus 213 ~~~~kkeea~~ 223 (360)
T KOG0023|consen 213 TSSKKKEEAIK 223 (360)
T ss_pred CCchhHHHHHH
Confidence 887 4444444
No 14
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=99.80 E-value=5.1e-19 Score=120.05 Aligned_cols=91 Identities=26% Similarity=0.249 Sum_probs=83.2
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
.|+|+||+.++++.++++|+++++++++.+ .++.++|+++ +..++++|++|+|+|+|++|++++|+++.+|+++|+++
T Consensus 138 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~ 217 (368)
T cd08300 138 TSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGI 217 (368)
T ss_pred cccceeEEEEchhceEeCCCCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 368999999999999999999999999888 7889999987 67889999999999999999999999999999659999
Q ss_pred ecChhhhhhhhcC
Q psy16556 88 KYVGIRIFPYKKI 100 (100)
Q Consensus 88 ~~~~~~~~~~~~l 100 (100)
+++++|+++++++
T Consensus 218 ~~~~~~~~~~~~l 230 (368)
T cd08300 218 DINPDKFELAKKF 230 (368)
T ss_pred eCCHHHHHHHHHc
Confidence 9999999887653
No 15
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=99.80 E-value=1e-18 Score=118.52 Aligned_cols=91 Identities=21% Similarity=0.253 Sum_probs=82.9
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
.|+|+||+++|++.++++|+++++++++.+ ++..++|+++ +..++++|++|+|+|+|++|++++|+++.+|+++|+++
T Consensus 139 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~ 218 (369)
T cd08301 139 TSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGV 218 (369)
T ss_pred cccceeEEEEecccEEECCCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 488999999999999999999999998888 7889999987 67889999999999999999999999999999559999
Q ss_pred ecChhhhhhhhcC
Q psy16556 88 KYVGIRIFPYKKI 100 (100)
Q Consensus 88 ~~~~~~~~~~~~l 100 (100)
+++++|.++++++
T Consensus 219 ~~~~~~~~~~~~~ 231 (369)
T cd08301 219 DLNPSKFEQAKKF 231 (369)
T ss_pred cCCHHHHHHHHHc
Confidence 9999999887653
No 16
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=99.79 E-value=7.7e-19 Score=118.74 Aligned_cols=91 Identities=23% Similarity=0.244 Sum_probs=83.1
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
+|+|+||+.+|++.++++|+++++++++.+ ++..++|+++ +..++++|++|+|+|+|++|++++|+++.+|+++|+++
T Consensus 128 ~G~~aey~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~ 207 (358)
T TIGR03451 128 IGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAV 207 (358)
T ss_pred cccccceEEEehhheEECCCCCChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 589999999999999999999999998888 7788899886 67889999999999999999999999999999769999
Q ss_pred ecChhhhhhhhcC
Q psy16556 88 KYVGIRIFPYKKI 100 (100)
Q Consensus 88 ~~~~~~~~~~~~l 100 (100)
+++++|+++++++
T Consensus 208 ~~~~~~~~~~~~~ 220 (358)
T TIGR03451 208 DIDDRKLEWAREF 220 (358)
T ss_pred cCCHHHHHHHHHc
Confidence 9999999988653
No 17
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=99.79 E-value=1.2e-18 Score=118.06 Aligned_cols=90 Identities=26% Similarity=0.303 Sum_probs=83.1
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
.|+|+||+.++++.++++|+++++++++.+ .++.|+|+++ +..++++|++|+|+|+|++|++++|+++.+|+++|+++
T Consensus 136 ~g~~ae~~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~ 215 (365)
T cd08277 136 TSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGV 215 (365)
T ss_pred cccceeeEEEchhheEECCCCCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 489999999999999999999999999988 7899999987 77889999999999999999999999999999669999
Q ss_pred ecChhhhhhhhc
Q psy16556 88 KYVGIRIFPYKK 99 (100)
Q Consensus 88 ~~~~~~~~~~~~ 99 (100)
+++++|++++++
T Consensus 216 ~~~~~~~~~~~~ 227 (365)
T cd08277 216 DINEDKFEKAKE 227 (365)
T ss_pred eCCHHHHHHHHH
Confidence 999999988765
No 18
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=99.79 E-value=1.9e-18 Score=116.22 Aligned_cols=90 Identities=28% Similarity=0.488 Sum_probs=82.4
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~ 89 (100)
+|+|+||+.+|++.++++|+++++++++.++++++++++++..++++|++|+|+|+|++|++++|+++.+|++.|+++++
T Consensus 114 ~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~~~~~~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~ 193 (347)
T PRK10309 114 DGGNAEYIVVKRKNLFALPTDMPIEDGAFIEPITVGLHAFHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI 193 (347)
T ss_pred CCccceeEEeehHHeEECcCCCCHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 69999999999999999999999999988777777888887788899999999999999999999999999986788889
Q ss_pred Chhhhhhhhc
Q psy16556 90 VGIRIFPYKK 99 (100)
Q Consensus 90 ~~~~~~~~~~ 99 (100)
+++|++++++
T Consensus 194 ~~~~~~~~~~ 203 (347)
T PRK10309 194 NSEKLALAKS 203 (347)
T ss_pred CHHHHHHHHH
Confidence 9999988765
No 19
>PLN02827 Alcohol dehydrogenase-like
Probab=99.79 E-value=1.5e-18 Score=118.29 Aligned_cols=91 Identities=23% Similarity=0.239 Sum_probs=81.8
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
+|+|+||+.+|++.++++|+++++++++.+ ++..++|+++ +..++++|++|+|+|+|++|++++|+++.+|++.|+++
T Consensus 145 ~G~~aeyv~v~~~~~~~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~ 224 (378)
T PLN02827 145 VSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGV 224 (378)
T ss_pred cccceeeEEechhheEECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 489999999999999999999999998877 7778888876 66889999999999999999999999999999768888
Q ss_pred ecChhhhhhhhcC
Q psy16556 88 KYVGIRIFPYKKI 100 (100)
Q Consensus 88 ~~~~~~~~~~~~l 100 (100)
+++++|.++++++
T Consensus 225 ~~~~~~~~~a~~l 237 (378)
T PLN02827 225 DINPEKAEKAKTF 237 (378)
T ss_pred CCCHHHHHHHHHc
Confidence 8899999887653
No 20
>KOG1198|consensus
Probab=99.78 E-value=1.4e-18 Score=117.42 Aligned_cols=91 Identities=29% Similarity=0.366 Sum_probs=83.3
Q ss_pred CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-Hhc------CCCCCCEEEEEcC-CHHHHHHHHHHHHc
Q psy16556 9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRS------GVGLGTSVLVLSA-GPIGLVTILAAKAY 79 (100)
Q Consensus 9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~------~~~~g~~vli~G~-G~~G~~~~~l~~~~ 79 (100)
..|+|+||+++|+..++++|+++++++++.+ .+..|||.++ ... +.++|++|||+|+ |++|++++|+|+..
T Consensus 102 ~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~ 181 (347)
T KOG1198|consen 102 SSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHA 181 (347)
T ss_pred CCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhc
Confidence 4799999999999999999999999999988 8999999999 667 7999999999998 89999999999999
Q ss_pred CCcEEEEEecChhhhhhhhcC
Q psy16556 80 GARVICVCKYVGIRIFPYKKI 100 (100)
Q Consensus 80 g~~~v~~~~~~~~~~~~~~~l 100 (100)
|+. .+++.+++++.++++++
T Consensus 182 ~~~-~v~t~~s~e~~~l~k~l 201 (347)
T KOG1198|consen 182 GAI-KVVTACSKEKLELVKKL 201 (347)
T ss_pred CCc-EEEEEcccchHHHHHHc
Confidence 966 66666999999998875
No 21
>KOG0022|consensus
Probab=99.77 E-value=1.8e-18 Score=114.04 Aligned_cols=90 Identities=24% Similarity=0.242 Sum_probs=86.4
Q ss_pred CcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556 11 GNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK 88 (100)
Q Consensus 11 G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~ 88 (100)
-+|+||.++++..+.++++..+++.++++ +..+|+|.+. +.+++++|+++.|+|.|.+|++++|-+|..|+.+||.+|
T Consensus 145 StFsEYTVv~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvD 224 (375)
T KOG0022|consen 145 STFSEYTVVDDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVD 224 (375)
T ss_pred ccceeEEEeecceeEecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEe
Confidence 37999999999999999999999999999 9999999987 899999999999999999999999999999999999999
Q ss_pred cChhhhhhhhcC
Q psy16556 89 YVGIRIFPYKKI 100 (100)
Q Consensus 89 ~~~~~~~~~~~l 100 (100)
-+++|.++++++
T Consensus 225 iN~~Kf~~ak~f 236 (375)
T KOG0022|consen 225 INPDKFEKAKEF 236 (375)
T ss_pred cCHHHHHHHHhc
Confidence 999999999875
No 22
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.77 E-value=4.6e-18 Score=114.66 Aligned_cols=90 Identities=21% Similarity=0.274 Sum_probs=83.0
Q ss_pred CCcccceEEecCCceEECCC------CCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCc
Q psy16556 10 HGNLSQFYKHAADFCYKLPD------HLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGAR 82 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~------~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~ 82 (100)
+|+|+||+.+|++.++++|+ ++++++++.+ +++.++|+++...++++|++|+|+|+|++|++++|+++.+|++
T Consensus 113 ~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a~~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~ 192 (349)
T TIGR03201 113 QGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAVQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAA 192 (349)
T ss_pred CCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCe
Confidence 69999999999999999999 8998888877 8999999999778899999999999999999999999999997
Q ss_pred EEEEEecChhhhhhhhcC
Q psy16556 83 VICVCKYVGIRIFPYKKI 100 (100)
Q Consensus 83 ~v~~~~~~~~~~~~~~~l 100 (100)
|++++++++|+++++++
T Consensus 193 -vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 193 -VVAIDIDPEKLEMMKGF 209 (349)
T ss_pred -EEEEcCCHHHHHHHHHh
Confidence 99999999999888653
No 23
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.76 E-value=9.5e-18 Score=112.53 Aligned_cols=88 Identities=17% Similarity=0.105 Sum_probs=78.6
Q ss_pred CcccceEEecC-CceEECC-CCCChh-hhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEE
Q psy16556 11 GNLSQFYKHAA-DFCYKLP-DHLTLE-EGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVI 84 (100)
Q Consensus 11 G~~ae~~~~~~-~~~~~~p-~~~~~~-~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v 84 (100)
|+|+||+++|+ +.++++| ++++++ +++.+ +++.|||+++ +..++++|++|+|+|+ |++|++++|+++.+|++ |
T Consensus 101 g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~-V 179 (338)
T cd08295 101 TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCY-V 179 (338)
T ss_pred CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE-E
Confidence 68999999999 7899995 678876 56666 8999999999 6788999999999998 99999999999999998 8
Q ss_pred EEEecChhhhhhhhc
Q psy16556 85 CVCKYVGIRIFPYKK 99 (100)
Q Consensus 85 ~~~~~~~~~~~~~~~ 99 (100)
+++++++++.+++++
T Consensus 180 i~~~~~~~~~~~~~~ 194 (338)
T cd08295 180 VGSAGSDEKVDLLKN 194 (338)
T ss_pred EEEeCCHHHHHHHHH
Confidence 998899999888764
No 24
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=99.76 E-value=1.6e-17 Score=111.89 Aligned_cols=90 Identities=47% Similarity=0.609 Sum_probs=82.3
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~ 89 (100)
+|+|+||+.++.+.++++|+++++++++.+.+..++|+++...++++|++|+|+|+|++|++++|+++.+|+++|+++++
T Consensus 126 ~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~ta~~~l~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~ 205 (351)
T cd08233 126 GGGFAEYVVVPAYHVHKLPDNVPLEEAALVEPLAVAWHAVRRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEP 205 (351)
T ss_pred CCceeeEEEechHHeEECcCCCCHHHhhhccHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 69999999999999999999999999887778889999998888999999999999999999999999999955999988
Q ss_pred Chhhhhhhhc
Q psy16556 90 VGIRIFPYKK 99 (100)
Q Consensus 90 ~~~~~~~~~~ 99 (100)
++++.+++++
T Consensus 206 ~~~~~~~~~~ 215 (351)
T cd08233 206 SEARRELAEE 215 (351)
T ss_pred CHHHHHHHHH
Confidence 9998887654
No 25
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=99.76 E-value=3.3e-18 Score=113.83 Aligned_cols=90 Identities=26% Similarity=0.283 Sum_probs=86.6
Q ss_pred CcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556 11 GNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK 88 (100)
Q Consensus 11 G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~ 88 (100)
++|+||.++++..+.|++++.+++.++++ +...|.+-+. +..++++|++|.|+|.|++|++++|-|+..|+++|+++|
T Consensus 138 stFa~y~vv~~~s~vki~~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD 217 (366)
T COG1062 138 STFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVD 217 (366)
T ss_pred ccchhheeecccceEECCCCCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEe
Confidence 48999999999999999999999999999 9999999987 999999999999999999999999999999999999999
Q ss_pred cChhhhhhhhcC
Q psy16556 89 YVGIRIFPYKKI 100 (100)
Q Consensus 89 ~~~~~~~~~~~l 100 (100)
.+++|++++++|
T Consensus 218 ~~~~Kl~~A~~f 229 (366)
T COG1062 218 INPEKLELAKKF 229 (366)
T ss_pred CCHHHHHHHHhc
Confidence 999999999875
No 26
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=99.76 E-value=8.1e-18 Score=114.12 Aligned_cols=84 Identities=24% Similarity=0.298 Sum_probs=75.0
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHH-hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACK-RSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~-~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
+|+|+||+++|++.++++|+++++++++.+ +...|+|+++. ...+++|++|+|.|+|++|++++|+++.+|++ |+++
T Consensus 135 ~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~-vi~~ 213 (360)
T PLN02586 135 YGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVI 213 (360)
T ss_pred CCccceEEEEchHHeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEE
Confidence 699999999999999999999999999878 88899999984 45678999999999999999999999999998 7777
Q ss_pred ecChhhh
Q psy16556 88 KYVGIRI 94 (100)
Q Consensus 88 ~~~~~~~ 94 (100)
+.+++++
T Consensus 214 ~~~~~~~ 220 (360)
T PLN02586 214 SSSSNKE 220 (360)
T ss_pred eCCcchh
Confidence 7666654
No 27
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=99.75 E-value=1.6e-17 Score=113.03 Aligned_cols=90 Identities=22% Similarity=0.251 Sum_probs=82.8
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
.|+|+||++++++.++++|+++++++++.+ .++.++|+++ +..++++|++|+|+|+|++|++++++++..|+++|+++
T Consensus 142 ~G~~~e~~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~ 221 (373)
T cd08299 142 TSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAV 221 (373)
T ss_pred CCcccceEEecccceeeCCCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 589999999999999999999999999988 7899999987 77889999999999889999999999999999559999
Q ss_pred ecChhhhhhhhc
Q psy16556 88 KYVGIRIFPYKK 99 (100)
Q Consensus 88 ~~~~~~~~~~~~ 99 (100)
+++++|++.+++
T Consensus 222 ~~~~~~~~~a~~ 233 (373)
T cd08299 222 DINKDKFAKAKE 233 (373)
T ss_pred cCCHHHHHHHHH
Confidence 999999888764
No 28
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.75 E-value=9.9e-18 Score=111.57 Aligned_cols=88 Identities=22% Similarity=0.103 Sum_probs=75.3
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~ 89 (100)
+|+|+||+++|++.++++|++++++. +.+++..|+|++++... .++++++|+|+|++|++++|+++.+|++.|++++.
T Consensus 100 ~G~~aey~~v~~~~~~~ip~~~~~~~-a~~~~~~~a~~~~~~~~-~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 100 FGGASKRLVTPASRVCRLDPALGPQG-ALLALAATARHAVAGAE-VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred CCcccceEEcCHHHceeCCCCCCHHH-HhhhHHHHHHHHHHhcc-cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 59999999999999999999999864 55667899999996543 36889999999999999999999999997777888
Q ss_pred Chhhhhhhhc
Q psy16556 90 VGIRIFPYKK 99 (100)
Q Consensus 90 ~~~~~~~~~~ 99 (100)
+++|++.+++
T Consensus 178 ~~~rl~~a~~ 187 (308)
T TIGR01202 178 NPRRRDGATG 187 (308)
T ss_pred CHHHHHhhhh
Confidence 8888776643
No 29
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=99.75 E-value=1.6e-17 Score=113.33 Aligned_cols=89 Identities=22% Similarity=0.266 Sum_probs=76.8
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcC--CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSG--VGLGTSVLVLSAGPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~--~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~ 86 (100)
+|+|+||+++|++.++++|+++++++++.+ +...|+|+++.... .++|++|+|.|+|++|++++|+++.+|++ |++
T Consensus 129 ~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~-Vi~ 207 (375)
T PLN02178 129 QGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLR-VTV 207 (375)
T ss_pred CCccccEEEEchHHeEECCCCCCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCCe-EEE
Confidence 699999999999999999999999999877 78889999985443 36899999999999999999999999998 888
Q ss_pred EecChhh-hhhhhc
Q psy16556 87 CKYVGIR-IFPYKK 99 (100)
Q Consensus 87 ~~~~~~~-~~~~~~ 99 (100)
++.++++ .+++++
T Consensus 208 ~~~~~~~~~~~a~~ 221 (375)
T PLN02178 208 ISRSSEKEREAIDR 221 (375)
T ss_pred EeCChHHhHHHHHh
Confidence 8776554 555544
No 30
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=99.74 E-value=2.4e-17 Score=111.37 Aligned_cols=90 Identities=28% Similarity=0.420 Sum_probs=75.2
Q ss_pred CCCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHh-------cCCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q psy16556 9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKR-------SGVGLGTSVLVLSAGPIGLVTILAAKAYGA 81 (100)
Q Consensus 9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~-------~~~~~g~~vli~G~G~~G~~~~~l~~~~g~ 81 (100)
.+|+|+||++++++.++++|++++ +++++..+++++++++.. .++++|++|+|+|+|++|++++|++|.+|+
T Consensus 119 ~~G~~aey~~~~~~~~~~~P~~~~-~~a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~ 197 (355)
T cd08230 119 LHGFMREYFVDDPEYLVKVPPSLA-DVGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF 197 (355)
T ss_pred CCccceeEEEeccccEEECCCCCC-cceeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 369999999999999999999999 666556787777666521 235789999999999999999999999999
Q ss_pred cEEEEEec---ChhhhhhhhcC
Q psy16556 82 RVICVCKY---VGIRIFPYKKI 100 (100)
Q Consensus 82 ~~v~~~~~---~~~~~~~~~~l 100 (100)
+ |+++++ +++|+++++++
T Consensus 198 ~-vi~~~~~~~~~~~~~~~~~~ 218 (355)
T cd08230 198 E-VYVLNRRDPPDPKADIVEEL 218 (355)
T ss_pred e-EEEEecCCCCHHHHHHHHHc
Confidence 7 998887 67888887654
No 31
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.74 E-value=4.3e-17 Score=108.81 Aligned_cols=89 Identities=24% Similarity=0.221 Sum_probs=79.4
Q ss_pred CcccceEEecCCceEEC----CCCCChhhh-hcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCc
Q psy16556 11 GNLSQFYKHAADFCYKL----PDHLTLEEG-ALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGAR 82 (100)
Q Consensus 11 G~~ae~~~~~~~~~~~~----p~~~~~~~a-a~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~ 82 (100)
++|+||++++.+.+.++ |++++++++ +.+ .++.|||+++ +..++++|++|+|+|+ |++|++++|+++..|++
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~ 165 (325)
T TIGR02825 86 PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCK 165 (325)
T ss_pred cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCE
Confidence 46999999999988877 999999887 455 8899999998 7889999999999997 99999999999999998
Q ss_pred EEEEEecChhhhhhhhcC
Q psy16556 83 VICVCKYVGIRIFPYKKI 100 (100)
Q Consensus 83 ~v~~~~~~~~~~~~~~~l 100 (100)
|++++++++|.++++++
T Consensus 166 -Vi~~~~s~~~~~~~~~l 182 (325)
T TIGR02825 166 -VVGAAGSDEKVAYLKKL 182 (325)
T ss_pred -EEEEeCCHHHHHHHHHc
Confidence 99999999998887653
No 32
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.73 E-value=3.9e-17 Score=111.58 Aligned_cols=90 Identities=26% Similarity=0.219 Sum_probs=81.4
Q ss_pred CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHH-h--cCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcE
Q psy16556 9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACK-R--SGVGLGTSVLVLSA-GPIGLVTILAAKAYGARV 83 (100)
Q Consensus 9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~-~--~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~ 83 (100)
.+|+|+||+.++.+.++++|+++++++++.+ .++.+||+++. . .+++++++|+|+|+ |++|++++++++.+|++
T Consensus 142 ~~g~~a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~- 220 (393)
T cd08246 142 NYGSFAQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGAN- 220 (393)
T ss_pred CCCcceeEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCe-
Confidence 3599999999999999999999999998877 89999999983 3 67899999999998 99999999999999999
Q ss_pred EEEEecChhhhhhhhc
Q psy16556 84 ICVCKYVGIRIFPYKK 99 (100)
Q Consensus 84 v~~~~~~~~~~~~~~~ 99 (100)
+++++++++|.+++++
T Consensus 221 vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 221 PVAVVSSEEKAEYCRA 236 (393)
T ss_pred EEEEeCCHHHHHHHHH
Confidence 7788899999888765
No 33
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.73 E-value=7.9e-17 Score=108.88 Aligned_cols=87 Identities=20% Similarity=0.125 Sum_probs=75.8
Q ss_pred CcccceEEecCCc--eEE--CCCCCChh-hhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCc
Q psy16556 11 GNLSQFYKHAADF--CYK--LPDHLTLE-EGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGAR 82 (100)
Q Consensus 11 G~~ae~~~~~~~~--~~~--~p~~~~~~-~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~ 82 (100)
|+|+||.+++++. +.+ +|++++++ +++.+ ++..|||+++ +..++++|++|+|+|+ |++|++++|++|.+|++
T Consensus 106 ~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~ 185 (348)
T PLN03154 106 TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCY 185 (348)
T ss_pred CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE
Confidence 6899999999853 544 49999986 56666 8999999998 6788999999999998 99999999999999998
Q ss_pred EEEEEecChhhhhhhh
Q psy16556 83 VICVCKYVGIRIFPYK 98 (100)
Q Consensus 83 ~v~~~~~~~~~~~~~~ 98 (100)
|++++++++|.++++
T Consensus 186 -Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 186 -VVGSAGSSQKVDLLK 200 (348)
T ss_pred -EEEEcCCHHHHHHHH
Confidence 999989999988765
No 34
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=99.73 E-value=1e-16 Score=108.32 Aligned_cols=90 Identities=30% Similarity=0.352 Sum_probs=79.9
Q ss_pred CCcccceEEecCC-ceEECCCCCChhhhhcc-hhHHHHHHHHHh-cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAAD-FCYKLPDHLTLEEGALL-EPLAVGVHACKR-SGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~-~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~-~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~ 86 (100)
.|+|+||+.++++ .++++|+++++++++.+ +++.|||+++.. ...++|++|||+|+|++|++++|+++.+|+++|++
T Consensus 128 ~g~~a~~~~v~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~ 207 (361)
T cd08231 128 SGGYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIV 207 (361)
T ss_pred CcccceEEEecCCCceEECCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence 5999999999996 79999999999988888 999999999944 45569999999998999999999999999944999
Q ss_pred EecChhhhhhhhc
Q psy16556 87 CKYVGIRIFPYKK 99 (100)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (100)
+++++++.+++++
T Consensus 208 ~~~~~~~~~~~~~ 220 (361)
T cd08231 208 IDGSPERLELARE 220 (361)
T ss_pred EcCCHHHHHHHHH
Confidence 9889988887754
No 35
>KOG1197|consensus
Probab=99.72 E-value=3.7e-17 Score=105.55 Aligned_cols=90 Identities=23% Similarity=0.220 Sum_probs=84.1
Q ss_pred CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEE
Q psy16556 9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVIC 85 (100)
Q Consensus 9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~ 85 (100)
..|.|+|+..+|...++++|+.+++++++.+ ....|||.-+ +..++++|++||++.+ |++|++++|+++..|+. +|
T Consensus 97 ~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~-tI 175 (336)
T KOG1197|consen 97 PFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAH-TI 175 (336)
T ss_pred cchhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcE-EE
Confidence 3799999999999999999999999998877 8999999988 7789999999999987 99999999999999999 88
Q ss_pred EEecChhhhhhhhc
Q psy16556 86 VCKYVGIRIFPYKK 99 (100)
Q Consensus 86 ~~~~~~~~~~~~~~ 99 (100)
++.+..+|.+.+++
T Consensus 176 ~~asTaeK~~~ake 189 (336)
T KOG1197|consen 176 ATASTAEKHEIAKE 189 (336)
T ss_pred EEeccHHHHHHHHh
Confidence 88899999998876
No 36
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=99.72 E-value=5.3e-17 Score=111.39 Aligned_cols=91 Identities=26% Similarity=0.420 Sum_probs=77.5
Q ss_pred CCcccceEEecCC--ceEECCCCCCh----hhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCc
Q psy16556 10 HGNLSQFYKHAAD--FCYKLPDHLTL----EEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGAR 82 (100)
Q Consensus 10 ~G~~ae~~~~~~~--~~~~~p~~~~~----~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~ 82 (100)
+|+|+||+++|+. .++++|++++. ++++.+ +++.++|++++..++++|++|+|.|+|++|++++|+++.+|++
T Consensus 132 ~G~~aey~~v~~~~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~ 211 (393)
T TIGR02819 132 VGGQSEYVMVPYADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGAVTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAA 211 (393)
T ss_pred CCceEEEEEechhhCceEECCCcccccccccceeeeccHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCc
Confidence 6999999999964 69999998753 234444 8899999999888899999999988899999999999999999
Q ss_pred EEEEEecChhhhhhhhcC
Q psy16556 83 VICVCKYVGIRIFPYKKI 100 (100)
Q Consensus 83 ~v~~~~~~~~~~~~~~~l 100 (100)
.|++++++++|+++++++
T Consensus 212 ~vi~~d~~~~r~~~a~~~ 229 (393)
T TIGR02819 212 VVIVGDLNPARLAQARSF 229 (393)
T ss_pred eEEEeCCCHHHHHHHHHc
Confidence 666667888899888764
No 37
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=99.72 E-value=6.1e-17 Score=109.67 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=77.1
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHH-hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACK-RSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~-~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
+|+|+||+++|.+.++++|+++++++++.+ .++.|+|+++. ....++|++++|+|+|++|++++|++|.+|++ ++++
T Consensus 132 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~-vi~~ 210 (357)
T PLN02514 132 QGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHH-VTVI 210 (357)
T ss_pred CCccccEEEEchHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCe-EEEE
Confidence 699999999999999999999999998877 88899999984 45567999999998899999999999999998 8888
Q ss_pred ecChhhhhhh
Q psy16556 88 KYVGIRIFPY 97 (100)
Q Consensus 88 ~~~~~~~~~~ 97 (100)
++++++++.+
T Consensus 211 ~~~~~~~~~~ 220 (357)
T PLN02514 211 SSSDKKREEA 220 (357)
T ss_pred eCCHHHHHHH
Confidence 7777776544
No 38
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=99.72 E-value=9.9e-17 Score=108.81 Aligned_cols=90 Identities=21% Similarity=0.241 Sum_probs=81.3
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
.|+|+||+.++++.++++|+++++++++.+ .++.++|+++ +..++++|++|+|+|+|++|++++++++.+|++.|+++
T Consensus 135 ~g~~a~~~~v~~~~~~~lP~~~~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~ 214 (365)
T cd05279 135 TSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAV 214 (365)
T ss_pred cccccceEEecCCceEECCCCCCHHHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 378999999999999999999999998888 7899999987 77889999999999889999999999999999867888
Q ss_pred ecChhhhhhhhc
Q psy16556 88 KYVGIRIFPYKK 99 (100)
Q Consensus 88 ~~~~~~~~~~~~ 99 (100)
+++++|.+.+++
T Consensus 215 ~~~~~~~~~~~~ 226 (365)
T cd05279 215 DINKDKFEKAKQ 226 (365)
T ss_pred eCCHHHHHHHHH
Confidence 888888887654
No 39
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.72 E-value=1.1e-16 Score=106.46 Aligned_cols=89 Identities=18% Similarity=0.306 Sum_probs=80.3
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~ 89 (100)
+|+|+||++++.+.++++|++++.++++.+.+..+++..++..+++++++++|+|+|.+|++++|+++.+|++ |++++.
T Consensus 109 ~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~~~~~~~~~~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~-vi~~~~ 187 (319)
T cd08242 109 DGAFAEYLTLPLENLHVVPDLVPDEQAVFAEPLAAALEILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPD-VVLVGR 187 (319)
T ss_pred CCceEEEEEechHHeEECcCCCCHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEEcC
Confidence 6999999999999999999999998888656666777777888999999999998899999999999999999 899988
Q ss_pred Chhhhhhhhc
Q psy16556 90 VGIRIFPYKK 99 (100)
Q Consensus 90 ~~~~~~~~~~ 99 (100)
++++.+++++
T Consensus 188 ~~~~~~~~~~ 197 (319)
T cd08242 188 HSEKLALARR 197 (319)
T ss_pred CHHHHHHHHH
Confidence 9999888764
No 40
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.71 E-value=1e-16 Score=107.05 Aligned_cols=89 Identities=17% Similarity=0.166 Sum_probs=80.8
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCC-----CCEEEEEcC-CHHHHHHHHHHHHc-C
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGL-----GTSVLVLSA-GPIGLVTILAAKAY-G 80 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~-----g~~vli~G~-G~~G~~~~~l~~~~-g 80 (100)
+|+|+||++++++.++++|+++++++++.+ .+..|||+++ +..++.+ |++|+|+|+ |++|++++|+++.+ |
T Consensus 95 ~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G 174 (336)
T TIGR02817 95 PGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTG 174 (336)
T ss_pred CCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCC
Confidence 599999999999999999999999999887 8899999998 6777776 999999997 99999999999998 9
Q ss_pred CcEEEEEecChhhhhhhhc
Q psy16556 81 ARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 81 ~~~v~~~~~~~~~~~~~~~ 99 (100)
++ |+++++++++.+++++
T Consensus 175 ~~-vi~~~~~~~~~~~l~~ 192 (336)
T TIGR02817 175 LT-VIATASRPESQEWVLE 192 (336)
T ss_pred CE-EEEEcCcHHHHHHHHH
Confidence 98 9999888888887754
No 41
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.71 E-value=1.1e-16 Score=107.86 Aligned_cols=90 Identities=27% Similarity=0.438 Sum_probs=82.0
Q ss_pred CCcccceEEecCC--ceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAAD--FCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~--~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~ 86 (100)
+|+|+||+.+|.+ .++++|+++++++++.+ .++.+++++++..++++|++|+|+|+|++|++++|+++.+|++.+++
T Consensus 117 ~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~ 196 (351)
T cd08285 117 DGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFHGAELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIA 196 (351)
T ss_pred CcceeEEEEcchhhCceEECCCCCCHHHhhhhccchhhHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence 6999999999974 89999999999999888 88999999988888999999999988999999999999999976888
Q ss_pred EecChhhhhhhhc
Q psy16556 87 CKYVGIRIFPYKK 99 (100)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (100)
++++++|.+++++
T Consensus 197 ~~~~~~~~~~~~~ 209 (351)
T cd08285 197 VGSRPNRVELAKE 209 (351)
T ss_pred EeCCHHHHHHHHH
Confidence 9888888887765
No 42
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.71 E-value=9.1e-17 Score=107.41 Aligned_cols=89 Identities=20% Similarity=0.297 Sum_probs=82.3
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKA-YGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~-~g~~~v~~~ 87 (100)
+|+|+||+.++.+.++++|+++++++++.+ .+..|+|++++..++++|++|+|+|+|++|++++++++. .|++ |+++
T Consensus 115 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~-v~~~ 193 (338)
T PRK09422 115 DGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAIKVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAK-VIAV 193 (338)
T ss_pred cCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCe-EEEE
Confidence 599999999999999999999999998888 888999999988889999999999999999999999998 5998 9999
Q ss_pred ecChhhhhhhhc
Q psy16556 88 KYVGIRIFPYKK 99 (100)
Q Consensus 88 ~~~~~~~~~~~~ 99 (100)
++++++++.+++
T Consensus 194 ~~~~~~~~~~~~ 205 (338)
T PRK09422 194 DINDDKLALAKE 205 (338)
T ss_pred eCChHHHHHHHH
Confidence 999999988754
No 43
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.71 E-value=1.7e-16 Score=105.65 Aligned_cols=88 Identities=23% Similarity=0.205 Sum_probs=77.3
Q ss_pred CcccceEEecCC---ceEECCCCCC------hhhhhcchhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHc
Q psy16556 11 GNLSQFYKHAAD---FCYKLPDHLT------LEEGALLEPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAY 79 (100)
Q Consensus 11 G~~ae~~~~~~~---~~~~~p~~~~------~~~aa~~~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~ 79 (100)
++|++|++++++ .++++|++++ ...+++..++.|||+++ +..++++|++|+|+|+ |++|++++|+++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~ 167 (329)
T cd08294 88 FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIK 167 (329)
T ss_pred CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHc
Confidence 579999999999 9999999998 22233348999999998 7788999999999997 99999999999999
Q ss_pred CCcEEEEEecChhhhhhhhc
Q psy16556 80 GARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 80 g~~~v~~~~~~~~~~~~~~~ 99 (100)
|++ |+++++++++.+++++
T Consensus 168 G~~-vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 168 GCK-VIGCAGSDDKVAWLKE 186 (329)
T ss_pred CCE-EEEEeCCHHHHHHHHH
Confidence 998 9999999999888765
No 44
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.71 E-value=1.4e-16 Score=106.75 Aligned_cols=90 Identities=34% Similarity=0.538 Sum_probs=81.0
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~ 89 (100)
+|+|+||++++++.++++|++++++++++..++.++|+++...++++|++|+|+|+|++|.+++|+++.+|++.++++++
T Consensus 115 ~g~~~~~~~v~~~~~~~lP~~~s~~~a~~~~~~~~a~~~~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~ 194 (341)
T cd08262 115 PGGYAEYMLLSEALLLRVPDGLSMEDAALTEPLAVGLHAVRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDF 194 (341)
T ss_pred CCceeeeEEechHHeEECCCCCCHHHhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC
Confidence 69999999999999999999999998885588889999888889999999999988999999999999999986777777
Q ss_pred Chhhhhhhhc
Q psy16556 90 VGIRIFPYKK 99 (100)
Q Consensus 90 ~~~~~~~~~~ 99 (100)
++++.+++++
T Consensus 195 ~~~~~~~~~~ 204 (341)
T cd08262 195 SPERRALALA 204 (341)
T ss_pred CHHHHHHHHH
Confidence 8888877654
No 45
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.71 E-value=1.5e-16 Score=106.60 Aligned_cols=89 Identities=22% Similarity=0.245 Sum_probs=81.7
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK 88 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~ 88 (100)
+|+|+||+.++.+.++++|+++++++++.+ .+..++|+++...++.++++|+|+|+|++|++++++++.+|++ |++++
T Consensus 116 ~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~-vi~~~ 194 (333)
T cd08296 116 DGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNALRNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFR-TVAIS 194 (333)
T ss_pred CCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCe-EEEEe
Confidence 589999999999999999999999988877 8889999998666899999999999999999999999999998 99999
Q ss_pred cChhhhhhhhc
Q psy16556 89 YVGIRIFPYKK 99 (100)
Q Consensus 89 ~~~~~~~~~~~ 99 (100)
+++++++.+++
T Consensus 195 ~~~~~~~~~~~ 205 (333)
T cd08296 195 RGSDKADLARK 205 (333)
T ss_pred CChHHHHHHHH
Confidence 99999888765
No 46
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=99.71 E-value=1.6e-16 Score=108.50 Aligned_cols=90 Identities=28% Similarity=0.401 Sum_probs=82.9
Q ss_pred CCcccceEEecCC--ceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAAD--FCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~--~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~ 86 (100)
+|+|+||++++++ .++++|+++++++++.+ ....++|++++..++.+|++|+|+|+|++|++++++++..|..+|++
T Consensus 135 ~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~ 214 (386)
T cd08283 135 AGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHAAELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIA 214 (386)
T ss_pred CCeeEEEEEcccccCeEEECCCCCCHHHHhhhccchhhhHHHHhhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 6999999999988 89999999999999987 88999999997788999999999988999999999999999866999
Q ss_pred EecChhhhhhhhc
Q psy16556 87 CKYVGIRIFPYKK 99 (100)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (100)
+++++++.+++++
T Consensus 215 ~~~~~~~~~~~~~ 227 (386)
T cd08283 215 IDRVPERLEMARS 227 (386)
T ss_pred EcCCHHHHHHHHH
Confidence 9999999988765
No 47
>PRK10083 putative oxidoreductase; Provisional
Probab=99.71 E-value=1.7e-16 Score=106.20 Aligned_cols=90 Identities=22% Similarity=0.433 Sum_probs=81.0
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCcEEEEEe
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKA-YGARVICVCK 88 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~-~g~~~v~~~~ 88 (100)
+|+|+||+.++.+.++++|+++++++++...++.+++++.+..++++|++|+|+|+|++|++++|+++. +|++.+++++
T Consensus 114 ~g~~~~~~~~~~~~~~~ip~~~~~~~a~~~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~ 193 (339)
T PRK10083 114 DGGFSEYAVVPAKNAHRIPDAIADQYAVMVEPFTIAANVTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVAD 193 (339)
T ss_pred CCcceeeEEechHHeEECcCCCCHHHHhhhchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEc
Confidence 599999999999999999999999888766788889877788899999999999999999999999996 6998788888
Q ss_pred cChhhhhhhhc
Q psy16556 89 YVGIRIFPYKK 99 (100)
Q Consensus 89 ~~~~~~~~~~~ 99 (100)
++++|.+++++
T Consensus 194 ~~~~~~~~~~~ 204 (339)
T PRK10083 194 RIDERLALAKE 204 (339)
T ss_pred CCHHHHHHHHH
Confidence 89999888765
No 48
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.70 E-value=1.9e-16 Score=106.37 Aligned_cols=90 Identities=53% Similarity=0.885 Sum_probs=81.3
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~ 89 (100)
.|+|+||++++++.++++|+++++++++.+.++.+++++++..++++|++++|.|+|++|++++|+++.+|++.|+++++
T Consensus 116 ~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~ 195 (343)
T cd05285 116 DGTLCRYVNHPADFCHKLPDNVSLEEGALVEPLSVGVHACRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDI 195 (343)
T ss_pred CCceeeeEEecHHHcEECcCCCCHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC
Confidence 58999999999999999999999999887778889999888889999999999988999999999999999986888888
Q ss_pred Chhhhhhhhc
Q psy16556 90 VGIRIFPYKK 99 (100)
Q Consensus 90 ~~~~~~~~~~ 99 (100)
++++.+++++
T Consensus 196 ~~~~~~~~~~ 205 (343)
T cd05285 196 DPSRLEFAKE 205 (343)
T ss_pred CHHHHHHHHH
Confidence 8888877654
No 49
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.70 E-value=1.9e-16 Score=106.22 Aligned_cols=89 Identities=13% Similarity=0.063 Sum_probs=75.1
Q ss_pred CcccceEEecCCceEECCCCCChhh-----hhcchhHHHHHHHH-HhcCCCCC--CEEEEEcC-CHHHHHHHHHHHHcCC
Q psy16556 11 GNLSQFYKHAADFCYKLPDHLTLEE-----GALLEPLAVGVHAC-KRSGVGLG--TSVLVLSA-GPIGLVTILAAKAYGA 81 (100)
Q Consensus 11 G~~ae~~~~~~~~~~~~p~~~~~~~-----aa~~~~~~ta~~~~-~~~~~~~g--~~vli~G~-G~~G~~~~~l~~~~g~ 81 (100)
++|+||+++|++.++++|+++++++ ++...++.|||+++ +..++++| ++|+|+|+ |++|++++|+++.+|+
T Consensus 101 ~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~ 180 (345)
T cd08293 101 WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGC 180 (345)
T ss_pred CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCC
Confidence 5799999999999999999864432 23337899999998 66778876 99999998 9999999999999999
Q ss_pred cEEEEEecChhhhhhhhc
Q psy16556 82 RVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 82 ~~v~~~~~~~~~~~~~~~ 99 (100)
++|++++++++|.+++++
T Consensus 181 ~~Vi~~~~s~~~~~~~~~ 198 (345)
T cd08293 181 SRVVGICGSDEKCQLLKS 198 (345)
T ss_pred CEEEEEcCCHHHHHHHHH
Confidence 449999999998887653
No 50
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=99.70 E-value=2.1e-16 Score=107.22 Aligned_cols=90 Identities=24% Similarity=0.279 Sum_probs=81.9
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
.|+|+||+.++++.++++|+++++++++.+ .++.+|++++ +...++++++|+|+|+|++|++++|+++..|++.++++
T Consensus 138 ~g~~~~y~~v~~~~~~~iP~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~ 217 (365)
T cd08278 138 QSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAV 217 (365)
T ss_pred ccceeeEEEecchhEEECCCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 489999999999999999999999988877 8899999987 67889999999999889999999999999999768999
Q ss_pred ecChhhhhhhhc
Q psy16556 88 KYVGIRIFPYKK 99 (100)
Q Consensus 88 ~~~~~~~~~~~~ 99 (100)
+++++|.+++++
T Consensus 218 ~~~~~k~~~~~~ 229 (365)
T cd08278 218 DIVDSRLELAKE 229 (365)
T ss_pred eCCHHHHHHHHH
Confidence 899988887654
No 51
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.70 E-value=3.1e-16 Score=106.20 Aligned_cols=90 Identities=52% Similarity=0.899 Sum_probs=80.1
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~ 89 (100)
+|+|+||+.++++.++++|++++++++++..++.++++++...++.+|++++|+|+|++|++++++++.+|++.++++++
T Consensus 135 ~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~ 214 (364)
T PLN02702 135 HGSLANQVVHPADLCFKLPENVSLEEGAMCEPLSVGVHACRRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDV 214 (364)
T ss_pred CCcccceEEcchHHeEECCCCCCHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 69999999999999999999999999886567777888887788999999999988999999999999999987888888
Q ss_pred Chhhhhhhhc
Q psy16556 90 VGIRIFPYKK 99 (100)
Q Consensus 90 ~~~~~~~~~~ 99 (100)
+++|.+++++
T Consensus 215 ~~~~~~~~~~ 224 (364)
T PLN02702 215 DDERLSVAKQ 224 (364)
T ss_pred CHHHHHHHHH
Confidence 8888776654
No 52
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.70 E-value=3.1e-16 Score=104.08 Aligned_cols=89 Identities=21% Similarity=0.240 Sum_probs=79.5
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
.|+|++|+.++++.++++|+++++++++.+ ....++|+++...++.+|++|+|+|+ |.+|++++|+++.+|++ ++++
T Consensus 92 ~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~-v~~~ 170 (324)
T cd08292 92 HGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLLDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGIN-VINL 170 (324)
T ss_pred CCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHHHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCe-EEEE
Confidence 589999999999999999999999998877 67788999887788999999999998 99999999999999998 8888
Q ss_pred ecChhhhhhhhc
Q psy16556 88 KYVGIRIFPYKK 99 (100)
Q Consensus 88 ~~~~~~~~~~~~ 99 (100)
.+++++.+.+++
T Consensus 171 ~~~~~~~~~~~~ 182 (324)
T cd08292 171 VRRDAGVAELRA 182 (324)
T ss_pred ecCHHHHHHHHh
Confidence 777777766543
No 53
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.69 E-value=2.9e-16 Score=104.78 Aligned_cols=89 Identities=21% Similarity=0.264 Sum_probs=74.7
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEE-cC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVL-SA-GPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~-G~-G~~G~~~~~l~~~~g~~~v~~ 86 (100)
+|+|+||+++|++.++++|+++++++++.+ ....|+|..++..+. ++++++|+ |+ |++|++++|+++.+|++ |++
T Consensus 96 ~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~~-vi~ 173 (324)
T cd08291 96 YGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGMLETARE-EGAKAVVHTAAASALGRMLVRLCKADGIK-VIN 173 (324)
T ss_pred CCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCCE-EEE
Confidence 499999999999999999999999998865 677788766555555 56667665 55 99999999999999998 999
Q ss_pred EecChhhhhhhhcC
Q psy16556 87 CKYVGIRIFPYKKI 100 (100)
Q Consensus 87 ~~~~~~~~~~~~~l 100 (100)
++++++|.++++++
T Consensus 174 ~~~~~~~~~~~~~~ 187 (324)
T cd08291 174 IVRRKEQVDLLKKI 187 (324)
T ss_pred EeCCHHHHHHHHHc
Confidence 99999999887653
No 54
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.69 E-value=3.8e-16 Score=106.27 Aligned_cols=90 Identities=28% Similarity=0.373 Sum_probs=79.5
Q ss_pred CCcccceEEecCC--ceEECCCCCChhh---hhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcE
Q psy16556 10 HGNLSQFYKHAAD--FCYKLPDHLTLEE---GALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARV 83 (100)
Q Consensus 10 ~G~~ae~~~~~~~--~~~~~p~~~~~~~---aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~ 83 (100)
+|+|+||+.+|.+ .++++|+++++++ ++.+ .+..++|++++..++.+|++|+|.|+|++|++++|+++..|+.+
T Consensus 124 ~g~~a~y~~v~~~~~~~~~lP~~~~~~~~~~~a~~~~~~~ta~~a~~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~ 203 (375)
T cd08282 124 GGGQAEYLRVPYADFNLLKLPDRDGAKEKDDYLMLSDIFPTGWHGLELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASR 203 (375)
T ss_pred CCeeeeEEEeecccCcEEECCCCCChhhhhheeeecchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence 5899999999976 8999999999984 4555 78999999998788999999999988999999999999999855
Q ss_pred EEEEecChhhhhhhhc
Q psy16556 84 ICVCKYVGIRIFPYKK 99 (100)
Q Consensus 84 v~~~~~~~~~~~~~~~ 99 (100)
|++++++++|.+++++
T Consensus 204 vi~~~~~~~~~~~~~~ 219 (375)
T cd08282 204 VYVVDHVPERLDLAES 219 (375)
T ss_pred EEEECCCHHHHHHHHH
Confidence 8889889988887764
No 55
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.69 E-value=3.7e-16 Score=104.13 Aligned_cols=89 Identities=20% Similarity=0.283 Sum_probs=82.3
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK 88 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~ 88 (100)
+|+|+||+.++.+.++++|+++++.+++.+ +++.++|++++..+++++++++|+|+|++|++++++++..|.+ |++++
T Consensus 120 ~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~-v~~~~ 198 (329)
T cd08298 120 DGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRALKLAGLKPGQRLGLYGFGASAHLALQIARYQGAE-VFAFT 198 (329)
T ss_pred CCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHHHHHHHhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCe-EEEEc
Confidence 589999999999999999999999998877 8999999999888999999999999899999999999999997 99998
Q ss_pred cChhhhhhhhc
Q psy16556 89 YVGIRIFPYKK 99 (100)
Q Consensus 89 ~~~~~~~~~~~ 99 (100)
+++++++.+++
T Consensus 199 ~~~~~~~~~~~ 209 (329)
T cd08298 199 RSGEHQELARE 209 (329)
T ss_pred CChHHHHHHHH
Confidence 88888887754
No 56
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.69 E-value=2.8e-16 Score=105.13 Aligned_cols=89 Identities=20% Similarity=0.269 Sum_probs=79.8
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHH-h-cCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CcEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACK-R-SGVGLGTSVLVLSAGPIGLVTILAAKAYG-ARVIC 85 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~-~-~~~~~g~~vli~G~G~~G~~~~~l~~~~g-~~~v~ 85 (100)
+|+|+||+.++++.++++|+++++++++.+ ..+.|||+++. . ..+.++++|+|+|+|++|++++++++.+| .+ |+
T Consensus 118 ~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~-v~ 196 (340)
T cd05284 118 DGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPAT-VI 196 (340)
T ss_pred CCcceeeEEecHHHeEECCCCCCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCCc-EE
Confidence 689999999999999999999999999888 88999999984 3 46889999999999889999999999999 67 88
Q ss_pred EEecChhhhhhhhc
Q psy16556 86 VCKYVGIRIFPYKK 99 (100)
Q Consensus 86 ~~~~~~~~~~~~~~ 99 (100)
++++++++.+.+++
T Consensus 197 ~~~~~~~~~~~~~~ 210 (340)
T cd05284 197 AVDRSEEALKLAER 210 (340)
T ss_pred EEeCCHHHHHHHHH
Confidence 88888888877654
No 57
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.69 E-value=2.7e-16 Score=108.21 Aligned_cols=90 Identities=23% Similarity=0.328 Sum_probs=75.0
Q ss_pred CCcccceEEecCC----ceEECCCCCChhhhhcchhHHHH---HHHH---------HhcCCCCCCEEEEEcC-CHHHHHH
Q psy16556 10 HGNLSQFYKHAAD----FCYKLPDHLTLEEGALLEPLAVG---VHAC---------KRSGVGLGTSVLVLSA-GPIGLVT 72 (100)
Q Consensus 10 ~G~~ae~~~~~~~----~~~~~p~~~~~~~aa~~~~~~ta---~~~~---------~~~~~~~g~~vli~G~-G~~G~~~ 72 (100)
+|+|+||+++|++ .++++|+++++++++++++++++ ++++ +..++++|++|+|+|+ |++|+++
T Consensus 113 ~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~a 192 (410)
T cd08238 113 PGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMA 192 (410)
T ss_pred CCcceEEEEecHHhccCCeEECCCCCCHHHHhhcchHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHH
Confidence 6999999999987 58999999999999877565443 3332 3467899999999986 9999999
Q ss_pred HHHHHHcCC--cEEEEEecChhhhhhhhc
Q psy16556 73 ILAAKAYGA--RVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 73 ~~l~~~~g~--~~v~~~~~~~~~~~~~~~ 99 (100)
+|+++.+|. .+|++++++++|++++++
T Consensus 193 iq~ak~~G~g~~~Vi~~~~~~~r~~~a~~ 221 (410)
T cd08238 193 IDYAIHGPIGPSLLVVTDVNDERLARAQR 221 (410)
T ss_pred HHHHHhcccCCceEEEEcCCHHHHHHHHH
Confidence 999999854 459999999999998865
No 58
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.68 E-value=3.7e-16 Score=103.15 Aligned_cols=89 Identities=21% Similarity=0.296 Sum_probs=81.2
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~ 86 (100)
+|+|++|+.++++.++++|+++++++++.+ .++.++|+++ +..++++|++|+|+|+ |++|++++|+++.+|++ |+.
T Consensus 94 ~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~-v~~ 172 (320)
T cd08243 94 DGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGAT-VTA 172 (320)
T ss_pred CcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCE-EEE
Confidence 589999999999999999999999988877 8999999998 5677999999999998 99999999999999999 898
Q ss_pred EecChhhhhhhhc
Q psy16556 87 CKYVGIRIFPYKK 99 (100)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (100)
+++++++.+.+++
T Consensus 173 ~~~~~~~~~~~~~ 185 (320)
T cd08243 173 TTRSPERAALLKE 185 (320)
T ss_pred EeCCHHHHHHHHh
Confidence 8888888887654
No 59
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.68 E-value=5.7e-16 Score=103.80 Aligned_cols=90 Identities=30% Similarity=0.442 Sum_probs=80.0
Q ss_pred CCcccceEEecCC--ceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAAD--FCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~--~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~ 86 (100)
+|+|++|+.++++ .++++|+++++++++.+ .++.|||++++..++.+|++|+|+|+|.+|++++++++.+|+.+|++
T Consensus 118 ~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~~~ta~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~ 197 (344)
T cd08284 118 DGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTGYFGAKRAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFA 197 (344)
T ss_pred CCceeEEEEcccccCceEECCCCCCHHHhhhhcCchHHHHhhhHhcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEE
Confidence 5899999999975 99999999999998877 89999999997688899999999988999999999999999844888
Q ss_pred EecChhhhhhhhc
Q psy16556 87 CKYVGIRIFPYKK 99 (100)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (100)
++++++|.+++++
T Consensus 198 ~~~~~~~~~~~~~ 210 (344)
T cd08284 198 VDPVPERLERAAA 210 (344)
T ss_pred EcCCHHHHHHHHH
Confidence 8888888776554
No 60
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.67 E-value=8.1e-16 Score=102.27 Aligned_cols=89 Identities=22% Similarity=0.303 Sum_probs=80.3
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~ 86 (100)
+|+|+||++++.+.++++|+++++++++.+ .++.++|+++ +..++++|++++|+|+ |++|++++++++.+|++ ++.
T Consensus 92 ~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~-v~~ 170 (334)
T PTZ00354 92 GGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAA-TII 170 (334)
T ss_pred CCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCE-EEE
Confidence 589999999999999999999999888877 8899999998 5578999999999997 99999999999999998 677
Q ss_pred EecChhhhhhhhc
Q psy16556 87 CKYVGIRIFPYKK 99 (100)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (100)
+++++++.+.+++
T Consensus 171 ~~~~~~~~~~~~~ 183 (334)
T PTZ00354 171 TTSSEEKVDFCKK 183 (334)
T ss_pred EeCCHHHHHHHHH
Confidence 8888888887654
No 61
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.67 E-value=1.1e-15 Score=102.98 Aligned_cols=90 Identities=28% Similarity=0.505 Sum_probs=80.2
Q ss_pred CCcccceEEecCC-ceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556 10 HGNLSQFYKHAAD-FCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK 88 (100)
Q Consensus 10 ~G~~ae~~~~~~~-~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~ 88 (100)
.|+|+||+.++++ .++++|+++++++++.+.++.++|++++..++.+|++|+|.|+|.+|++++++++.+|++.+++++
T Consensus 127 ~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~~~~~~ta~~a~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~ 206 (350)
T cd08256 127 NGGMAEYMRFPKEAIVHKVPDDIPPEDAILIEPLACALHAVDRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLD 206 (350)
T ss_pred CCcceeeEEcccccceEECCCCCCHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 6999999999988 578999999999888778889999998778899999999977799999999999999998788888
Q ss_pred cChhhhhhhhc
Q psy16556 89 YVGIRIFPYKK 99 (100)
Q Consensus 89 ~~~~~~~~~~~ 99 (100)
++++|.+++++
T Consensus 207 ~~~~~~~~~~~ 217 (350)
T cd08256 207 LKDERLALARK 217 (350)
T ss_pred CCHHHHHHHHH
Confidence 88888877654
No 62
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.67 E-value=1.1e-15 Score=98.63 Aligned_cols=89 Identities=40% Similarity=0.532 Sum_probs=80.2
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
.|+|++|+.++.+.++++|+++++++++.+ .++.++|+++ ....++++++++|+|+|++|++++++++..|.+ |+++
T Consensus 86 ~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~-v~~~ 164 (271)
T cd05188 86 DGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGAR-VIVT 164 (271)
T ss_pred CCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEE
Confidence 699999999999999999999999999988 9999999999 455568999999999966999999999999987 9999
Q ss_pred ecChhhhhhhhc
Q psy16556 88 KYVGIRIFPYKK 99 (100)
Q Consensus 88 ~~~~~~~~~~~~ 99 (100)
++++++.+.+++
T Consensus 165 ~~~~~~~~~~~~ 176 (271)
T cd05188 165 DRSDEKLELAKE 176 (271)
T ss_pred cCCHHHHHHHHH
Confidence 999888877653
No 63
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.67 E-value=1.2e-15 Score=100.60 Aligned_cols=89 Identities=24% Similarity=0.297 Sum_probs=79.8
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
+|+|++|+.++.+.++++|+++++++++.+ ..+.++|+++......+|++++|+|+ |++|++++++++..|++ |+.+
T Consensus 85 ~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~-v~~~ 163 (305)
T cd08270 85 MGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPLLGRRVLVTGASGGVGRFAVQLAALAGAH-VVAV 163 (305)
T ss_pred CcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHcCCE-EEEE
Confidence 589999999999999999999999998888 88899999985444446999999998 99999999999999998 9999
Q ss_pred ecChhhhhhhhc
Q psy16556 88 KYVGIRIFPYKK 99 (100)
Q Consensus 88 ~~~~~~~~~~~~ 99 (100)
++++++.+.+++
T Consensus 164 ~~~~~~~~~~~~ 175 (305)
T cd08270 164 VGSPARAEGLRE 175 (305)
T ss_pred eCCHHHHHHHHH
Confidence 899999888764
No 64
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.67 E-value=1e-15 Score=104.90 Aligned_cols=89 Identities=22% Similarity=0.174 Sum_probs=80.2
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHH---hcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACK---RSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVI 84 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~---~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v 84 (100)
+|+|+||+.++++.++++|+++++++++.+ .+..++|+++. ..++.+|++++|+|+ |++|++++++++.+|++ +
T Consensus 139 ~g~~ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~-v 217 (398)
T TIGR01751 139 FGSFAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGN-P 217 (398)
T ss_pred CccceEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCe-E
Confidence 699999999999999999999999998877 78999999984 467899999999998 99999999999999999 7
Q ss_pred EEEecChhhhhhhhc
Q psy16556 85 CVCKYVGIRIFPYKK 99 (100)
Q Consensus 85 ~~~~~~~~~~~~~~~ 99 (100)
+++++++++.+.+++
T Consensus 218 i~~~~~~~~~~~~~~ 232 (398)
T TIGR01751 218 VAVVSSPEKAEYCRE 232 (398)
T ss_pred EEEcCCHHHHHHHHH
Confidence 778788888887764
No 65
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.67 E-value=1.1e-15 Score=102.39 Aligned_cols=89 Identities=33% Similarity=0.552 Sum_probs=80.4
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~ 89 (100)
+|+|++|+++|++.++++|+++++++++.+.+..++|+++....++++++|+|+|+|.+|.+++|+++.+|.+.|+++++
T Consensus 113 ~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~~~~~ta~~~l~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~ 192 (343)
T cd08236 113 DGAFAEYVSVPARNLIKIPDHVDYEEAAMIEPAAVALHAVRLAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDI 192 (343)
T ss_pred CCcccceEEechHHeEECcCCCCHHHHHhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 69999999999999999999999999887777889999987778899999999988999999999999999976888888
Q ss_pred Chhhhhhhh
Q psy16556 90 VGIRIFPYK 98 (100)
Q Consensus 90 ~~~~~~~~~ 98 (100)
++++.++++
T Consensus 193 ~~~~~~~l~ 201 (343)
T cd08236 193 DDEKLAVAR 201 (343)
T ss_pred CHHHHHHHH
Confidence 888777654
No 66
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.66 E-value=1.4e-15 Score=103.82 Aligned_cols=90 Identities=31% Similarity=0.465 Sum_probs=77.9
Q ss_pred CCcccceEEecCCceEECCCC-------CChhhhhcchhHHHHHHHH-Hh-cCCCCCCEEEEEcCCHHHHHHHHHHHHcC
Q psy16556 10 HGNLSQFYKHAADFCYKLPDH-------LTLEEGALLEPLAVGVHAC-KR-SGVGLGTSVLVLSAGPIGLVTILAAKAYG 80 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~-------~~~~~aa~~~~~~ta~~~~-~~-~~~~~g~~vli~G~G~~G~~~~~l~~~~g 80 (100)
+|+|++|+.++++.++++|++ ++.+.+++..++.++|+++ .. .++++|++|+|+|+|++|++++|+++.+|
T Consensus 148 ~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G 227 (384)
T cd08265 148 DGAFAEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAG 227 (384)
T ss_pred CCcceeeEEechHHeEECCccccccccCCCHHHhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence 699999999999999999986 4566565558899999998 44 68999999999988999999999999999
Q ss_pred CcEEEEEecChhhhhhhhc
Q psy16556 81 ARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 81 ~~~v~~~~~~~~~~~~~~~ 99 (100)
+++|++++++++|.+++++
T Consensus 228 ~~~vi~~~~~~~~~~~~~~ 246 (384)
T cd08265 228 ASKVIAFEISEERRNLAKE 246 (384)
T ss_pred CCEEEEEcCCHHHHHHHHH
Confidence 9659999888888877654
No 67
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.66 E-value=1.7e-15 Score=101.46 Aligned_cols=89 Identities=39% Similarity=0.619 Sum_probs=79.7
Q ss_pred CCcccceEEecCCc-----eEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEE
Q psy16556 10 HGNLSQFYKHAADF-----CYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVI 84 (100)
Q Consensus 10 ~G~~ae~~~~~~~~-----~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v 84 (100)
+|+|++|+.++++. ++++|+++++++++.+.+..++++++...++++|++|+|+|+|.+|++++|+++..|.+.|
T Consensus 114 ~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~a~~~l~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v 193 (343)
T cd08235 114 DGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLACCINAQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKV 193 (343)
T ss_pred CCcceeeEEecccccccccEEECCCCCCHHHHHhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEE
Confidence 59999999999998 9999999999998876788999999966689999999999889999999999999999867
Q ss_pred EEEecChhhhhhhh
Q psy16556 85 CVCKYVGIRIFPYK 98 (100)
Q Consensus 85 ~~~~~~~~~~~~~~ 98 (100)
+++++++++.+.++
T Consensus 194 ~~~~~s~~~~~~~~ 207 (343)
T cd08235 194 IVSDLNEFRLEFAK 207 (343)
T ss_pred EEECCCHHHHHHHH
Confidence 77878888877654
No 68
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.66 E-value=7.5e-16 Score=103.24 Aligned_cols=90 Identities=28% Similarity=0.439 Sum_probs=80.0
Q ss_pred CCcccceEEecCC--ceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAAD--FCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~--~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~ 86 (100)
+|+|+||++++++ .++++|+++++++++.+ .++.|||+++...+++++++|+|.|+|++|++++|+++.+|...+++
T Consensus 118 ~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~ 197 (347)
T cd05278 118 DGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGAELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIA 197 (347)
T ss_pred CCeeeEEEEecchhCeEEECCCCCCHHHHhhhcchhhheeehhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 5899999999997 89999999999999888 88999999987788999999999888999999999999999744888
Q ss_pred EecChhhhhhhhc
Q psy16556 87 CKYVGIRIFPYKK 99 (100)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (100)
+++++++.+++++
T Consensus 198 ~~~~~~~~~~~~~ 210 (347)
T cd05278 198 VDSNPERLDLAKE 210 (347)
T ss_pred EeCCHHHHHHHHH
Confidence 8888888776553
No 69
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.66 E-value=1.1e-15 Score=102.37 Aligned_cols=88 Identities=19% Similarity=0.085 Sum_probs=76.9
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~ 86 (100)
.|+|+||+.++++.++++|+++++++++.+ .+..++|+++ ....+++|++|+|+|+ |++|++++|+++..|++ +++
T Consensus 98 ~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~-v~~ 176 (341)
T cd08290 98 LGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIK-TIN 176 (341)
T ss_pred CccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCCe-EEE
Confidence 599999999999999999999999998887 8899999998 5578899999999998 99999999999999998 777
Q ss_pred EecCh----hhhhhhh
Q psy16556 87 CKYVG----IRIFPYK 98 (100)
Q Consensus 87 ~~~~~----~~~~~~~ 98 (100)
+.+++ ++.+.++
T Consensus 177 ~~~~~~~~~~~~~~~~ 192 (341)
T cd08290 177 VVRDRPDLEELKERLK 192 (341)
T ss_pred EEcCCCcchhHHHHHH
Confidence 66654 4455543
No 70
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.66 E-value=1.2e-15 Score=101.42 Aligned_cols=89 Identities=25% Similarity=0.306 Sum_probs=77.7
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHh---cC-CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKR---SG-VGLGTSVLVLSA-GPIGLVTILAAKAYGARV 83 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~---~~-~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~ 83 (100)
+|+|+||+.++++.++++|+++++++++.+ ....|+++++.. .. ...+++|+|+|+ |++|++++|+++.+|++
T Consensus 95 ~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~- 173 (326)
T cd08289 95 HGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGYE- 173 (326)
T ss_pred CCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCCe-
Confidence 699999999999999999999999999887 778888888732 23 345789999998 99999999999999998
Q ss_pred EEEEecChhhhhhhhc
Q psy16556 84 ICVCKYVGIRIFPYKK 99 (100)
Q Consensus 84 v~~~~~~~~~~~~~~~ 99 (100)
|+++++++++.+.+++
T Consensus 174 v~~~~~~~~~~~~~~~ 189 (326)
T cd08289 174 VVASTGKADAADYLKK 189 (326)
T ss_pred EEEEecCHHHHHHHHH
Confidence 9999999999887754
No 71
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.66 E-value=1.5e-15 Score=102.94 Aligned_cols=90 Identities=27% Similarity=0.304 Sum_probs=80.9
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
+|+|+||+.++.+.++++|+++++++++.+ .++.|||+++ +...+.++++|+|+|+|++|++++++++..|++.++++
T Consensus 139 ~g~~~~~~~~~~~~~~~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~ 218 (367)
T cd08263 139 MGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAV 218 (367)
T ss_pred CCcceeEEEechhhEEECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEE
Confidence 589999999999999999999999999888 8899999998 56677899999999889999999999999999878888
Q ss_pred ecChhhhhhhhc
Q psy16556 88 KYVGIRIFPYKK 99 (100)
Q Consensus 88 ~~~~~~~~~~~~ 99 (100)
++++++.+++++
T Consensus 219 ~~s~~~~~~~~~ 230 (367)
T cd08263 219 DVRDEKLAKAKE 230 (367)
T ss_pred eCCHHHHHHHHH
Confidence 888888776643
No 72
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.66 E-value=1.1e-15 Score=102.52 Aligned_cols=88 Identities=24% Similarity=0.305 Sum_probs=78.6
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
+|+|++|+.++.+.++++|+++++++++.+ .+..++|++++..++++|++++|+|+ |++|++++++++.+|++ ++.+
T Consensus 130 ~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~-vi~~ 208 (350)
T cd08274 130 DGGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENMLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAI-VIAV 208 (350)
T ss_pred CccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCE-EEEE
Confidence 599999999999999999999999888877 89999999987788999999999998 99999999999999999 7777
Q ss_pred ecChhhhhhhhc
Q psy16556 88 KYVGIRIFPYKK 99 (100)
Q Consensus 88 ~~~~~~~~~~~~ 99 (100)
++++ +++.+++
T Consensus 209 ~~~~-~~~~~~~ 219 (350)
T cd08274 209 AGAA-KEEAVRA 219 (350)
T ss_pred eCch-hhHHHHh
Confidence 6654 6666553
No 73
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=99.66 E-value=1.6e-15 Score=99.06 Aligned_cols=89 Identities=27% Similarity=0.269 Sum_probs=80.3
Q ss_pred CcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 11 GNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 11 G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
+.|++|+.++.+.++++|+++++++++.+.+..++|+++...++++|++++|+|+|++|++++++++.+|.++|++++++
T Consensus 52 ~~~~~~~~v~~~~~~~ip~~l~~~~aa~~~~~~ta~~~~~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~ 131 (277)
T cd08255 52 GPHAERVVVPANLLVPLPDGLPPERAALTALAATALNGVRDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPD 131 (277)
T ss_pred CCcceEEEcCHHHeeECcCCCCHHHhHHHHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCC
Confidence 46899999999999999999999888877888999999887889999999999889999999999999998868888888
Q ss_pred hhhhhhhhc
Q psy16556 91 GIRIFPYKK 99 (100)
Q Consensus 91 ~~~~~~~~~ 99 (100)
+++.+++++
T Consensus 132 ~~~~~~~~~ 140 (277)
T cd08255 132 AARRELAEA 140 (277)
T ss_pred HHHHHHHHH
Confidence 888887654
No 74
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.66 E-value=1.7e-15 Score=101.67 Aligned_cols=89 Identities=26% Similarity=0.301 Sum_probs=80.9
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK 88 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~ 88 (100)
+|+|+||+.++++.++++|+++++++++.+ +...++|+++....+++|++++|.|.|++|++++++++.+|++ |++++
T Consensus 122 ~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~-v~~~~ 200 (337)
T cd05283 122 QGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPLKRNGVGPGKRVGVVGIGGLGHLAVKFAKALGAE-VTAFS 200 (337)
T ss_pred CCcceeEEEechhheEECCCCCCHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCe-EEEEc
Confidence 689999999999999999999999998877 8889999998666789999999988899999999999999997 99998
Q ss_pred cChhhhhhhhc
Q psy16556 89 YVGIRIFPYKK 99 (100)
Q Consensus 89 ~~~~~~~~~~~ 99 (100)
+++++.+.+++
T Consensus 201 ~~~~~~~~~~~ 211 (337)
T cd05283 201 RSPSKKEDALK 211 (337)
T ss_pred CCHHHHHHHHH
Confidence 98888887654
No 75
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.66 E-value=1.7e-15 Score=101.46 Aligned_cols=88 Identities=42% Similarity=0.669 Sum_probs=79.1
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~ 89 (100)
.|+|++|+.++++ ++++|+++++++++.+.+..+++++++..++.+|++|||+|+|.+|.+++|+++.+|.+ |+++.+
T Consensus 114 ~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~~~~~~a~~~~~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~-v~~~~~ 191 (337)
T cd08261 114 DGGFAEYIVVPAD-ALLVPEGLSLDQAALVEPLAIGAHAVRRAGVTAGDTVLVVGAGPIGLGVIQVAKARGAR-VIVVDI 191 (337)
T ss_pred CCcceeEEEechh-eEECCCCCCHHHhhhhchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEECC
Confidence 5899999999999 99999999999988777778888888778899999999998899999999999999999 888888
Q ss_pred Chhhhhhhhc
Q psy16556 90 VGIRIFPYKK 99 (100)
Q Consensus 90 ~~~~~~~~~~ 99 (100)
++++.+++++
T Consensus 192 s~~~~~~~~~ 201 (337)
T cd08261 192 DDERLEFARE 201 (337)
T ss_pred CHHHHHHHHH
Confidence 8888877643
No 76
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.65 E-value=1.6e-15 Score=102.80 Aligned_cols=90 Identities=26% Similarity=0.352 Sum_probs=81.2
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
.|+|+||+.++++.++++|+++++++++.+ .+..++|+++ +..++.++++++|+|+|++|++++++++.+|+++|+.+
T Consensus 134 ~g~~~~~~~~~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~ 213 (363)
T cd08279 134 LGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAV 213 (363)
T ss_pred CccceeeEEeccccEEECCCCCChHHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEE
Confidence 589999999999999999999999998888 7889999987 67889999999999879999999999999999768888
Q ss_pred ecChhhhhhhhc
Q psy16556 88 KYVGIRIFPYKK 99 (100)
Q Consensus 88 ~~~~~~~~~~~~ 99 (100)
++++++.+++++
T Consensus 214 ~~~~~~~~~~~~ 225 (363)
T cd08279 214 DPVPEKLELARR 225 (363)
T ss_pred cCCHHHHHHHHH
Confidence 888888877643
No 77
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.65 E-value=1.7e-15 Score=101.35 Aligned_cols=90 Identities=37% Similarity=0.552 Sum_probs=77.7
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~ 89 (100)
+|+|+||++++++.++++|+++++++++...++.++|+++......++++|+|.|+|.+|++++|+++.+|.+.++++++
T Consensus 119 ~g~~~~~v~v~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~ 198 (339)
T cd08232 119 QGGFREYLVVDASQCVPLPDGLSLRRAALAEPLAVALHAVNRAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDL 198 (339)
T ss_pred CCceeeEEEechHHeEECcCCCCHHHhhhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC
Confidence 59999999999999999999999999877678889999984443338999999888999999999999999954899988
Q ss_pred Chhhhhhhhc
Q psy16556 90 VGIRIFPYKK 99 (100)
Q Consensus 90 ~~~~~~~~~~ 99 (100)
++++.+++++
T Consensus 199 s~~~~~~~~~ 208 (339)
T cd08232 199 ADAPLAVARA 208 (339)
T ss_pred CHHHHHHHHH
Confidence 8887776543
No 78
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.65 E-value=2.3e-15 Score=100.26 Aligned_cols=89 Identities=25% Similarity=0.176 Sum_probs=80.1
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~ 86 (100)
+|+|++|+.++.+.++++|+++++++++.+ .+..++++++ +..++.+|++++|+|+ |.+|++++++++.+|++ ++.
T Consensus 92 ~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~-v~~ 170 (327)
T PRK10754 92 LGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAK-LIG 170 (327)
T ss_pred CcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCE-EEE
Confidence 589999999999999999999999988876 7888999988 6678999999999986 99999999999999999 888
Q ss_pred EecChhhhhhhhc
Q psy16556 87 CKYVGIRIFPYKK 99 (100)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (100)
+++++++.+++++
T Consensus 171 ~~~~~~~~~~~~~ 183 (327)
T PRK10754 171 TVGSAQKAQRAKK 183 (327)
T ss_pred EeCCHHHHHHHHH
Confidence 8888888877654
No 79
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.65 E-value=2.2e-15 Score=100.50 Aligned_cols=90 Identities=38% Similarity=0.549 Sum_probs=80.6
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~ 89 (100)
+|+|+||+.++.+.++++|+++++.+++.+.+..+++++++..++.+|++++|+|+|.+|.+++++++..|++.|+++++
T Consensus 113 ~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~~~~~~a~~~l~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~ 192 (334)
T cd08234 113 NGGFAEYVVVPAKQVYKIPDNLSFEEAALAEPLSCAVHGLDLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEP 192 (334)
T ss_pred CCcceeEEEecHHHcEECcCCCCHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC
Confidence 68999999999999999999999998876677888999887788999999999988999999999999999986788888
Q ss_pred Chhhhhhhhc
Q psy16556 90 VGIRIFPYKK 99 (100)
Q Consensus 90 ~~~~~~~~~~ 99 (100)
++++.+.+++
T Consensus 193 ~~~~~~~~~~ 202 (334)
T cd08234 193 NEEKLELAKK 202 (334)
T ss_pred CHHHHHHHHH
Confidence 8888877643
No 80
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.65 E-value=2.4e-15 Score=100.94 Aligned_cols=89 Identities=22% Similarity=0.305 Sum_probs=80.8
Q ss_pred CCcccceEEecCC--ceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEE
Q psy16556 10 HGNLSQFYKHAAD--FCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVIC 85 (100)
Q Consensus 10 ~G~~ae~~~~~~~--~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~ 85 (100)
+|+|++|+.+++. .++++|+++++++++.+ .+..+||+++ +..++.++++++|+|+|++|++++++++..|.+ |+
T Consensus 115 ~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~-vi 193 (345)
T cd08260 115 PGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGAR-VI 193 (345)
T ss_pred CCcceeEEEcccccCceEECCCCCCHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EE
Confidence 6999999999985 89999999999988877 7899999998 678899999999999999999999999999998 89
Q ss_pred EEecChhhhhhhhc
Q psy16556 86 VCKYVGIRIFPYKK 99 (100)
Q Consensus 86 ~~~~~~~~~~~~~~ 99 (100)
++++++++.+.+++
T Consensus 194 ~~~~~~~~~~~~~~ 207 (345)
T cd08260 194 AVDIDDDKLELARE 207 (345)
T ss_pred EEeCCHHHHHHHHH
Confidence 99899888887654
No 81
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.64 E-value=2.3e-15 Score=100.54 Aligned_cols=89 Identities=25% Similarity=0.329 Sum_probs=80.9
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
+|+|++|+.++.+.++++|+++++++++.+ .++.++|+++....++++++++|+|+ |.+|++++++++.+|++ ++++
T Consensus 115 ~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~~~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~-vi~~ 193 (334)
T PRK13771 115 DGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLRRAGVKKGETVLVTGAGGGVGIHAIQVAKALGAK-VIAV 193 (334)
T ss_pred CceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCE-EEEE
Confidence 689999999999999999999999998887 78899999985558899999999998 99999999999999998 8888
Q ss_pred ecChhhhhhhhc
Q psy16556 88 KYVGIRIFPYKK 99 (100)
Q Consensus 88 ~~~~~~~~~~~~ 99 (100)
++++++.+.+++
T Consensus 194 ~~~~~~~~~~~~ 205 (334)
T PRK13771 194 TSSESKAKIVSK 205 (334)
T ss_pred eCCHHHHHHHHH
Confidence 888888877654
No 82
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.64 E-value=3e-15 Score=99.28 Aligned_cols=89 Identities=21% Similarity=0.202 Sum_probs=79.6
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
.|+|++|+.++.+.++++|+++++++++.+ ..+.++|..++..+++++++++|+|+ |++|++++++++..|++ |+++
T Consensus 95 ~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~-v~~~ 173 (324)
T cd08244 95 GGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGAT-VVGA 173 (324)
T ss_pred CceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCE-EEEE
Confidence 589999999999999999999999998877 78888865557888999999999997 99999999999999998 8999
Q ss_pred ecChhhhhhhhc
Q psy16556 88 KYVGIRIFPYKK 99 (100)
Q Consensus 88 ~~~~~~~~~~~~ 99 (100)
++++++.+.+++
T Consensus 174 ~~~~~~~~~~~~ 185 (324)
T cd08244 174 AGGPAKTALVRA 185 (324)
T ss_pred eCCHHHHHHHHH
Confidence 888888877653
No 83
>KOG0025|consensus
Probab=99.64 E-value=2.5e-15 Score=98.50 Aligned_cols=92 Identities=18% Similarity=0.097 Sum_probs=79.8
Q ss_pred CCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCc
Q psy16556 6 TPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGAR 82 (100)
Q Consensus 6 ~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~ 82 (100)
.....|+|++|.+++++.++++++.++++.||++ .+.+|||..+ +..++.+|++|+..|+ .++|++.+|+++++|.+
T Consensus 108 ~~a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gik 187 (354)
T KOG0025|consen 108 LSANLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIK 187 (354)
T ss_pred cCCCCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcc
Confidence 3445799999999999999999999999999999 9999999999 7889999999999999 89999999999999999
Q ss_pred EEEEEecChhhhhhhh
Q psy16556 83 VICVCKYVGIRIFPYK 98 (100)
Q Consensus 83 ~v~~~~~~~~~~~~~~ 98 (100)
. +-+.++....+.++
T Consensus 188 t-invVRdR~~ieel~ 202 (354)
T KOG0025|consen 188 T-INVVRDRPNIEELK 202 (354)
T ss_pred e-EEEeecCccHHHHH
Confidence 4 44446655555443
No 84
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.64 E-value=3.7e-15 Score=96.63 Aligned_cols=89 Identities=22% Similarity=0.295 Sum_probs=81.1
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~ 86 (100)
+|+|+||+.++.+.++++|+++++++++.+ .+..++++++ +...+.+|++|+|+|+ |.+|++++++++..|++ |++
T Consensus 56 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~-v~~ 134 (288)
T smart00829 56 PGSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAE-VFA 134 (288)
T ss_pred CCceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCE-EEE
Confidence 489999999999999999999999998888 7899999998 7788999999999996 99999999999999998 999
Q ss_pred EecChhhhhhhhc
Q psy16556 87 CKYVGIRIFPYKK 99 (100)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (100)
+++++++.+.+++
T Consensus 135 ~~~~~~~~~~~~~ 147 (288)
T smart00829 135 TAGSPEKRDFLRE 147 (288)
T ss_pred EeCCHHHHHHHHH
Confidence 9888888877653
No 85
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.64 E-value=3.4e-15 Score=99.02 Aligned_cols=89 Identities=20% Similarity=0.274 Sum_probs=77.9
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHH-hc--CCC-CCCEEEEEcC-CHHHHHHHHHHHHcCCcE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACK-RS--GVG-LGTSVLVLSA-GPIGLVTILAAKAYGARV 83 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~-~~--~~~-~g~~vli~G~-G~~G~~~~~l~~~~g~~~ 83 (100)
+|+|+||+.++++.++++|+++++++++.+ ..+.++++++. .. .+. .+++|+|+|+ |++|++++++++.+|++
T Consensus 95 ~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~- 173 (325)
T cd05280 95 DGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGYT- 173 (325)
T ss_pred CceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCCE-
Confidence 689999999999999999999999999888 78889998873 32 335 4579999998 99999999999999999
Q ss_pred EEEEecChhhhhhhhc
Q psy16556 84 ICVCKYVGIRIFPYKK 99 (100)
Q Consensus 84 v~~~~~~~~~~~~~~~ 99 (100)
|+++++++++++.+++
T Consensus 174 v~~~~~~~~~~~~~~~ 189 (325)
T cd05280 174 VVALTGKEEQADYLKS 189 (325)
T ss_pred EEEEeCCHHHHHHHHh
Confidence 9999999999887754
No 86
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.64 E-value=3.6e-15 Score=99.93 Aligned_cols=89 Identities=25% Similarity=0.333 Sum_probs=80.8
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
.|+|++|+.++++.++++|+++++++++.+ ....|||+++...+++++++++|+|+ +.+|++++++++.+|.+ |+++
T Consensus 118 ~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~~~~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~-v~~~ 196 (341)
T cd08297 118 DGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALKKAGLKPGDWVVISGAGGGLGHLGVQYAKAMGLR-VIAI 196 (341)
T ss_pred CCcceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEE
Confidence 589999999999999999999999998877 88999999996668999999999998 67999999999999998 9999
Q ss_pred ecChhhhhhhhc
Q psy16556 88 KYVGIRIFPYKK 99 (100)
Q Consensus 88 ~~~~~~~~~~~~ 99 (100)
++++++.+.+++
T Consensus 197 ~~~~~~~~~~~~ 208 (341)
T cd08297 197 DVGDEKLELAKE 208 (341)
T ss_pred eCCHHHHHHHHH
Confidence 999888887654
No 87
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.64 E-value=3.6e-15 Score=99.04 Aligned_cols=89 Identities=19% Similarity=0.187 Sum_probs=77.0
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHH---hcCCC-CCCEEEEEcC-CHHHHHHHHHHHHcCCcE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACK---RSGVG-LGTSVLVLSA-GPIGLVTILAAKAYGARV 83 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~---~~~~~-~g~~vli~G~-G~~G~~~~~l~~~~g~~~ 83 (100)
+|+|+||++++.+.++++|+++++++++.+ ..+.++++++. ..... ++++++|+|+ |++|++++|+++.+|++
T Consensus 95 ~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~~- 173 (324)
T cd08288 95 WGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGYE- 173 (324)
T ss_pred CCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCe-
Confidence 689999999999999999999999988877 77777776653 34555 6789999998 99999999999999998
Q ss_pred EEEEecChhhhhhhhc
Q psy16556 84 ICVCKYVGIRIFPYKK 99 (100)
Q Consensus 84 v~~~~~~~~~~~~~~~ 99 (100)
|++++++++|.+.+++
T Consensus 174 vi~~~~~~~~~~~~~~ 189 (324)
T cd08288 174 VVASTGRPEEADYLRS 189 (324)
T ss_pred EEEEeCCHHHHHHHHh
Confidence 8888889998887754
No 88
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.63 E-value=3e-15 Score=98.01 Aligned_cols=89 Identities=24% Similarity=0.336 Sum_probs=81.1
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
+|+|++|++++++.++++|+++++++++.+ .+..++|++++..++++|++++|+|+ |++|++++|+++.+|++ ++++
T Consensus 73 ~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~-v~~~ 151 (303)
T cd08251 73 MGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAFARAGLAKGEHILIQTATGGTGLMAVQLARLKGAE-IYAT 151 (303)
T ss_pred CcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHHHhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCE-EEEE
Confidence 589999999999999999999999998887 88999999998889999999999987 99999999999999998 8888
Q ss_pred ecChhhhhhhhc
Q psy16556 88 KYVGIRIFPYKK 99 (100)
Q Consensus 88 ~~~~~~~~~~~~ 99 (100)
++++++.+.+++
T Consensus 152 ~~~~~~~~~~~~ 163 (303)
T cd08251 152 ASSDDKLEYLKQ 163 (303)
T ss_pred cCCHHHHHHHHH
Confidence 888888777643
No 89
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.63 E-value=2.5e-15 Score=101.15 Aligned_cols=90 Identities=20% Similarity=0.180 Sum_probs=80.0
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHH-hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACK-RSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~-~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
.|+|++|+.++.+.++++|+++++++++.+ ..+.+||++++ .....++++|+|+|+|++|++++|+++..|+++|+++
T Consensus 127 ~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~ 206 (350)
T cd08240 127 DGGYAEYVIVPHSRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVV 206 (350)
T ss_pred cCcceeeEEecHHHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEE
Confidence 689999999999999999999999998877 88999999984 4556689999999889999999999999999668889
Q ss_pred ecChhhhhhhhc
Q psy16556 88 KYVGIRIFPYKK 99 (100)
Q Consensus 88 ~~~~~~~~~~~~ 99 (100)
+++++|.+.+++
T Consensus 207 ~~~~~~~~~~~~ 218 (350)
T cd08240 207 DIDEAKLEAAKA 218 (350)
T ss_pred eCCHHHHHHHHH
Confidence 888888877654
No 90
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.63 E-value=3.4e-15 Score=99.54 Aligned_cols=89 Identities=24% Similarity=0.272 Sum_probs=81.0
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK 88 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~ 88 (100)
.|+|++|+.++++.++++|+++++++++.+ ....++|+++...++.++++++|+|+|.+|++++++++.+|.+ |++++
T Consensus 115 ~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~-v~~~~ 193 (330)
T cd08245 115 QGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRDAGPRPGERVAVLGIGGLGHLAVQYARAMGFE-TVAIT 193 (330)
T ss_pred CCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHHHhhCCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEe
Confidence 589999999999999999999999998877 8889999999668899999999998888999999999999998 99999
Q ss_pred cChhhhhhhhc
Q psy16556 89 YVGIRIFPYKK 99 (100)
Q Consensus 89 ~~~~~~~~~~~ 99 (100)
+++++.+.+++
T Consensus 194 ~~~~~~~~~~~ 204 (330)
T cd08245 194 RSPDKRELARK 204 (330)
T ss_pred CCHHHHHHHHH
Confidence 99988877643
No 91
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.63 E-value=3.4e-15 Score=99.52 Aligned_cols=89 Identities=24% Similarity=0.358 Sum_probs=81.1
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
+|+|++|+.++.+.++++|+++++++++.+ .++.+||+++ +..+++++++++|.|+|++|++++++++..|.+ |+++
T Consensus 117 ~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~-V~~~ 195 (338)
T cd08254 117 DGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAA-VIAV 195 (338)
T ss_pred CCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCCE-EEEE
Confidence 589999999999999999999999998877 8999999998 567799999999988899999999999999998 9999
Q ss_pred ecChhhhhhhhc
Q psy16556 88 KYVGIRIFPYKK 99 (100)
Q Consensus 88 ~~~~~~~~~~~~ 99 (100)
++++++.+.+++
T Consensus 196 ~~s~~~~~~~~~ 207 (338)
T cd08254 196 DIKEEKLELAKE 207 (338)
T ss_pred cCCHHHHHHHHH
Confidence 999988877653
No 92
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.63 E-value=5.4e-15 Score=99.27 Aligned_cols=90 Identities=27% Similarity=0.434 Sum_probs=79.3
Q ss_pred CCcccceEEecCC--ceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEE
Q psy16556 10 HGNLSQFYKHAAD--FCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVIC 85 (100)
Q Consensus 10 ~G~~ae~~~~~~~--~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~ 85 (100)
+|+|+||+.++.+ .++++|+++++++++.+ ....++|+++ ...++.+|++++|.|+|++|.+++|+++.+|..+|+
T Consensus 116 ~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~ 195 (345)
T cd08286 116 DGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKII 195 (345)
T ss_pred CCeeeeEEEcccccCceEECCCCCCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEE
Confidence 4899999999987 89999999999998877 8889999876 677899999999998899999999999999944488
Q ss_pred EEecChhhhhhhhc
Q psy16556 86 VCKYVGIRIFPYKK 99 (100)
Q Consensus 86 ~~~~~~~~~~~~~~ 99 (100)
+++++++|.+++++
T Consensus 196 ~~~~~~~~~~~~~~ 209 (345)
T cd08286 196 MVDLDDNRLEVAKK 209 (345)
T ss_pred EEcCCHHHHHHHHH
Confidence 88888888776654
No 93
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.63 E-value=5.3e-15 Score=98.30 Aligned_cols=89 Identities=24% Similarity=0.298 Sum_probs=77.5
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH---HhcCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCcE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC---KRSGVGLGT-SVLVLSA-GPIGLVTILAAKAYGARV 83 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~---~~~~~~~g~-~vli~G~-G~~G~~~~~l~~~~g~~~ 83 (100)
+|+|++|+.+|++.++++|+++++++++.+ ....++++++ ....+.+++ +|+|+|+ |++|++++++++.+|++
T Consensus 94 ~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~- 172 (323)
T TIGR02823 94 DGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYE- 172 (323)
T ss_pred CccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCe-
Confidence 689999999999999999999999998877 7778887776 334588898 9999998 99999999999999998
Q ss_pred EEEEecChhhhhhhhc
Q psy16556 84 ICVCKYVGIRIFPYKK 99 (100)
Q Consensus 84 v~~~~~~~~~~~~~~~ 99 (100)
++++++++++.+.+++
T Consensus 173 vi~~~~~~~~~~~~~~ 188 (323)
T TIGR02823 173 VVASTGKAEEEDYLKE 188 (323)
T ss_pred EEEEeCCHHHHHHHHh
Confidence 8877788888777654
No 94
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.62 E-value=5.8e-15 Score=97.87 Aligned_cols=89 Identities=19% Similarity=0.155 Sum_probs=80.0
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~ 86 (100)
.|+|++|+.++.+.++++|+++++++++.+ ....++|+++ +...+.+|++|+|+|+ |.+|++++++++.+|++ +++
T Consensus 90 ~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~-v~~ 168 (323)
T cd05282 90 EGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFK-TIN 168 (323)
T ss_pred CCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCe-EEE
Confidence 489999999999999999999999888877 7888999988 6677899999999998 89999999999999999 888
Q ss_pred EecChhhhhhhhc
Q psy16556 87 CKYVGIRIFPYKK 99 (100)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (100)
+.+++++.+.+++
T Consensus 169 ~~~~~~~~~~~~~ 181 (323)
T cd05282 169 VVRRDEQVEELKA 181 (323)
T ss_pred EecChHHHHHHHh
Confidence 8888888877654
No 95
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.61 E-value=8.7e-15 Score=97.26 Aligned_cols=88 Identities=35% Similarity=0.466 Sum_probs=80.0
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
.|+|++|++++.+.++++|+++++++++.+ .++.++|+++...++.++++++|+|+ |++|++++++++..|.+ |+.+
T Consensus 115 ~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~-v~~~ 193 (332)
T cd08259 115 DGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHALKRAGVKKGDTVLVTGAGGGVGIHAIQLAKALGAR-VIAV 193 (332)
T ss_pred CCeeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCe-EEEE
Confidence 589999999999999999999999998877 89999999995588999999999998 99999999999999999 8888
Q ss_pred ecChhhhhhhh
Q psy16556 88 KYVGIRIFPYK 98 (100)
Q Consensus 88 ~~~~~~~~~~~ 98 (100)
.+++++.+.++
T Consensus 194 ~~~~~~~~~~~ 204 (332)
T cd08259 194 TRSPEKLKILK 204 (332)
T ss_pred eCCHHHHHHHH
Confidence 88888777654
No 96
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.61 E-value=1.1e-14 Score=94.41 Aligned_cols=88 Identities=25% Similarity=0.292 Sum_probs=79.6
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~ 86 (100)
.|+|+||+.++.+.++++|+++++++++.+ .+..++++++ +..++++|++++|+|+ |++|++++++++..|++ ++.
T Consensus 60 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~-v~~ 138 (293)
T cd05195 60 PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAE-VFA 138 (293)
T ss_pred cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCE-EEE
Confidence 489999999999999999999999998887 8999999998 6688999999999986 99999999999999998 888
Q ss_pred EecChhhhhhhh
Q psy16556 87 CKYVGIRIFPYK 98 (100)
Q Consensus 87 ~~~~~~~~~~~~ 98 (100)
+++++++.+.++
T Consensus 139 ~~~~~~~~~~~~ 150 (293)
T cd05195 139 TVGSEEKREFLR 150 (293)
T ss_pred EeCCHHHHHHHH
Confidence 888877777654
No 97
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.61 E-value=8.8e-15 Score=97.63 Aligned_cols=90 Identities=20% Similarity=0.236 Sum_probs=80.0
Q ss_pred CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCC-----CCEEEEEcC-CHHHHHHHHHHHHcC
Q psy16556 9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGL-----GTSVLVLSA-GPIGLVTILAAKAYG 80 (100)
Q Consensus 9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~-----g~~vli~G~-G~~G~~~~~l~~~~g 80 (100)
.+|+|++|+.++.+.++++|+++++++++.+ ....++|+++ +...+.+ |++++|+|+ |++|++++++++.+|
T Consensus 95 ~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G 174 (336)
T cd08252 95 RPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLT 174 (336)
T ss_pred CCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcC
Confidence 3689999999999999999999999998877 7888999987 6677777 999999997 999999999999999
Q ss_pred -CcEEEEEecChhhhhhhhc
Q psy16556 81 -ARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 81 -~~~v~~~~~~~~~~~~~~~ 99 (100)
.+ |+++++++++.+++++
T Consensus 175 ~~~-v~~~~~~~~~~~~~~~ 193 (336)
T cd08252 175 GLT-VIATASRPESIAWVKE 193 (336)
T ss_pred CcE-EEEEcCChhhHHHHHh
Confidence 77 8999888888887654
No 98
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.60 E-value=1.5e-14 Score=97.03 Aligned_cols=90 Identities=27% Similarity=0.382 Sum_probs=75.3
Q ss_pred CCcccceEEecCC--ceEECCCCCChhhhh-----cc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q psy16556 10 HGNLSQFYKHAAD--FCYKLPDHLTLEEGA-----LL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA 81 (100)
Q Consensus 10 ~G~~ae~~~~~~~--~~~~~p~~~~~~~aa-----~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~ 81 (100)
+|+|+||+.+|.+ .++++|++++++.+. .+ ..+.+++++++..++++|++++|.|+|++|++++|+++.+|+
T Consensus 114 ~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~ 193 (345)
T cd08287 114 DGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMGTGHHAAVSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGA 193 (345)
T ss_pred CCceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhhcHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 5899999999975 899999999873221 12 568889999877889999999998889999999999999999
Q ss_pred cEEEEEecChhhhhhhhc
Q psy16556 82 RVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 82 ~~v~~~~~~~~~~~~~~~ 99 (100)
+.++++++++++.+++++
T Consensus 194 ~~v~~~~~~~~~~~~~~~ 211 (345)
T cd08287 194 ERIIAMSRHEDRQALARE 211 (345)
T ss_pred CEEEEECCCHHHHHHHHH
Confidence 868888888777776554
No 99
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.60 E-value=1.8e-14 Score=95.07 Aligned_cols=88 Identities=28% Similarity=0.400 Sum_probs=75.6
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK 88 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~ 88 (100)
.|+|++|+.++++.++++|+++ ..++.. .++.++++++...+++++++++|+|+|.+|.+++|+++.+|++.|+++.
T Consensus 84 ~g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~ 161 (312)
T cd08269 84 GGAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFRRGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAID 161 (312)
T ss_pred CCcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEC
Confidence 4899999999999999999998 333444 7888999998888899999999998899999999999999998678888
Q ss_pred cChhhhhhhhc
Q psy16556 89 YVGIRIFPYKK 99 (100)
Q Consensus 89 ~~~~~~~~~~~ 99 (100)
+++++.+++++
T Consensus 162 ~~~~~~~~~~~ 172 (312)
T cd08269 162 RRPARLALARE 172 (312)
T ss_pred CCHHHHHHHHH
Confidence 88888776543
No 100
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.59 E-value=1.8e-14 Score=95.77 Aligned_cols=89 Identities=27% Similarity=0.302 Sum_probs=80.7
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
+|+|++|+.++.+.++++|+++++.+++.+ .+..++|+++ +...+++|++++|+|.|++|++++++++..|++ |+++
T Consensus 112 ~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~~-v~~~ 190 (336)
T cd08276 112 DGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGAR-VIAT 190 (336)
T ss_pred CceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCE-EEEE
Confidence 688999999999999999999999888877 8899999998 567899999999998899999999999999999 8999
Q ss_pred ecChhhhhhhhc
Q psy16556 88 KYVGIRIFPYKK 99 (100)
Q Consensus 88 ~~~~~~~~~~~~ 99 (100)
++++++.+.+++
T Consensus 191 ~~~~~~~~~~~~ 202 (336)
T cd08276 191 SSSDEKLERAKA 202 (336)
T ss_pred eCCHHHHHHHHH
Confidence 888888877653
No 101
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.59 E-value=1.7e-14 Score=94.89 Aligned_cols=88 Identities=24% Similarity=0.320 Sum_probs=79.7
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~ 86 (100)
+|+|++|+.++.+.++++|+++++++++.+ .+..++|+++ +...+.++++++|+|+ |++|++++++++..|++ |++
T Consensus 91 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~-v~~ 169 (323)
T cd05276 91 GGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGAR-VIA 169 (323)
T ss_pred CCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCCE-EEE
Confidence 489999999999999999999999888877 8999999998 5678999999999998 89999999999999999 888
Q ss_pred EecChhhhhhhh
Q psy16556 87 CKYVGIRIFPYK 98 (100)
Q Consensus 87 ~~~~~~~~~~~~ 98 (100)
+++++++.+.++
T Consensus 170 ~~~~~~~~~~~~ 181 (323)
T cd05276 170 TAGSEEKLEACR 181 (323)
T ss_pred EcCCHHHHHHHH
Confidence 888888777654
No 102
>KOG1202|consensus
Probab=99.59 E-value=1.1e-15 Score=113.95 Aligned_cols=96 Identities=21% Similarity=0.227 Sum_probs=87.4
Q ss_pred eeecCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHH
Q psy16556 2 VFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKA 78 (100)
Q Consensus 2 ~~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~ 78 (100)
|++|.-+ .-+.++-+.++.+.++.+|+++++++|++. +.++|+|+++ .++.+++|+++||+++ |++|+++|.+|.+
T Consensus 1497 RvM~mvp-AksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa 1575 (2376)
T KOG1202|consen 1497 RVMGMVP-AKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALA 1575 (2376)
T ss_pred EEEEeee-hhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHH
Confidence 5666654 356788899999999999999999999999 8999999999 8899999999999976 9999999999999
Q ss_pred cCCcEEEEEecChhhhhhhhc
Q psy16556 79 YGARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 79 ~g~~~v~~~~~~~~~~~~~~~ 99 (100)
.|++ |+.+..+.||++++++
T Consensus 1576 ~G~~-VFTTVGSaEKRefL~~ 1595 (2376)
T KOG1202|consen 1576 HGCT-VFTTVGSAEKREFLLK 1595 (2376)
T ss_pred cCCE-EEEecCcHHHHHHHHH
Confidence 9999 9999999999999865
No 103
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.58 E-value=2.6e-14 Score=95.90 Aligned_cols=89 Identities=27% Similarity=0.424 Sum_probs=75.8
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~ 89 (100)
+|+|+||+.++++.++++|+++++++++.+.++.+++++... ...+|++|+|.|+|++|++++|+++..|+++|+++++
T Consensus 118 ~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~ 196 (341)
T PRK05396 118 PGAFAEYLVIPAFNVWKIPDDIPDDLAAIFDPFGNAVHTALS-FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDV 196 (341)
T ss_pred CCcceeeEEechHHeEECcCCCCHHHhHhhhHHHHHHHHHHc-CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 699999999999999999999999988866777777776532 3468999999888999999999999999965888888
Q ss_pred Chhhhhhhhc
Q psy16556 90 VGIRIFPYKK 99 (100)
Q Consensus 90 ~~~~~~~~~~ 99 (100)
++++.+++++
T Consensus 197 ~~~~~~~~~~ 206 (341)
T PRK05396 197 NEYRLELARK 206 (341)
T ss_pred CHHHHHHHHH
Confidence 8888877654
No 104
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.58 E-value=2.4e-14 Score=95.18 Aligned_cols=88 Identities=39% Similarity=0.593 Sum_probs=75.2
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK 88 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~ 88 (100)
+|+|+||++++++.++++|+++++++++...+..++|+++ ...+++++++|+|.|.|.+|.+++|+++.+|++ |+.+.
T Consensus 117 ~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~-v~~~~ 195 (306)
T cd08258 117 DGGFAEYVLVPEESLHELPENLSLEAAALTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGAT-VVVVG 195 (306)
T ss_pred CCceEEEEEcchHHeEECcCCCCHHHHHhhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCE-EEEEC
Confidence 5899999999999999999999999888558888999998 778899999999988799999999999999999 76663
Q ss_pred --cChhhhhhhh
Q psy16556 89 --YVGIRIFPYK 98 (100)
Q Consensus 89 --~~~~~~~~~~ 98 (100)
+++++.+.++
T Consensus 196 ~~~~~~~~~~~~ 207 (306)
T cd08258 196 TEKDEVRLDVAK 207 (306)
T ss_pred CCCCHHHHHHHH
Confidence 3444555443
No 105
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.58 E-value=1.8e-14 Score=96.75 Aligned_cols=88 Identities=25% Similarity=0.379 Sum_probs=76.8
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCC----------CCCCEEEEEcC-CHHHHHHHHHH
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGV----------GLGTSVLVLSA-GPIGLVTILAA 76 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~----------~~g~~vli~G~-G~~G~~~~~l~ 76 (100)
+|+|++|++++.+.++++|+++++++++.+ .++.++|+++ +..++ .++++++|+|+ |++|+++++++
T Consensus 96 ~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a 175 (339)
T cd08249 96 NGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLA 175 (339)
T ss_pred CCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHH
Confidence 589999999999999999999999998888 7999999998 44433 78999999998 89999999999
Q ss_pred HHcCCcEEEEEecChhhhhhhhc
Q psy16556 77 KAYGARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 77 ~~~g~~~v~~~~~~~~~~~~~~~ 99 (100)
+.+|++ |+.+. +++|.+.+++
T Consensus 176 ~~~G~~-v~~~~-~~~~~~~~~~ 196 (339)
T cd08249 176 KLAGYK-VITTA-SPKNFDLVKS 196 (339)
T ss_pred HHcCCe-EEEEE-CcccHHHHHh
Confidence 999998 77776 5678777654
No 106
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.57 E-value=2.7e-14 Score=95.83 Aligned_cols=89 Identities=36% Similarity=0.439 Sum_probs=76.7
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~ 89 (100)
.|+|++|++++++.++++|+++++++++...++.++++++ .....+|++++|.|+|++|.+++|+++.+|.+.|+++++
T Consensus 116 ~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~a~~~~-~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~ 194 (340)
T TIGR00692 116 DGCFAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTV-LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDP 194 (340)
T ss_pred CCcceeEEEeehHHcEECcCCCChHhhhhcchHHHHHHHH-HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC
Confidence 5899999999999999999999987776668888998886 445678999999888999999999999999976788877
Q ss_pred Chhhhhhhhc
Q psy16556 90 VGIRIFPYKK 99 (100)
Q Consensus 90 ~~~~~~~~~~ 99 (100)
++++.+++++
T Consensus 195 ~~~~~~~~~~ 204 (340)
T TIGR00692 195 NEYRLELAKK 204 (340)
T ss_pred CHHHHHHHHH
Confidence 8888776554
No 107
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.57 E-value=2.7e-14 Score=93.75 Aligned_cols=89 Identities=26% Similarity=0.195 Sum_probs=80.3
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~ 86 (100)
.|+|++|+.++.+.++++|++++.++++.+ ....++++++ +..++.+|++|+|+|+ |++|++++++++.+|++ |++
T Consensus 88 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~-v~~ 166 (320)
T cd05286 88 PGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGAT-VIG 166 (320)
T ss_pred CCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCE-EEE
Confidence 589999999999999999999999988876 8888999988 6688999999999997 99999999999999998 888
Q ss_pred EecChhhhhhhhc
Q psy16556 87 CKYVGIRIFPYKK 99 (100)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (100)
+++++++.+.+++
T Consensus 167 ~~~~~~~~~~~~~ 179 (320)
T cd05286 167 TVSSEEKAELARA 179 (320)
T ss_pred EcCCHHHHHHHHH
Confidence 8888888877654
No 108
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.57 E-value=3.5e-14 Score=95.36 Aligned_cols=89 Identities=30% Similarity=0.408 Sum_probs=76.2
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~ 89 (100)
.|+|++|++++++.++++|++++++.+++..++.++++++. ...++|++|+|.|+|.+|++++|+++.+|.++|+++++
T Consensus 118 ~g~~~~~v~v~~~~~~~lP~~~~~~~a~~~~~~~~a~~~~~-~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~ 196 (341)
T cd05281 118 DGCFAEYVVVPEENLWKNDKDIPPEIASIQEPLGNAVHTVL-AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDP 196 (341)
T ss_pred CCcceEEEEechHHcEECcCCCCHHHhhhhhHHHHHHHHHH-hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC
Confidence 58999999999999999999999877766688888888775 34578999999888999999999999999955888878
Q ss_pred Chhhhhhhhc
Q psy16556 90 VGIRIFPYKK 99 (100)
Q Consensus 90 ~~~~~~~~~~ 99 (100)
+++|.+++++
T Consensus 197 ~~~~~~~~~~ 206 (341)
T cd05281 197 NPYRLELAKK 206 (341)
T ss_pred CHHHHHHHHH
Confidence 8888776553
No 109
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.57 E-value=4.1e-14 Score=94.27 Aligned_cols=88 Identities=20% Similarity=0.154 Sum_probs=75.4
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
.|+|++|+.++.+.++++|++. .+.+.+..++.++|+++ +..++.+|++++|+|+ |.+|++++++++..|.+ |+++
T Consensus 93 ~g~~~s~~~v~~~~~~~ip~~~-~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~-v~~~ 170 (329)
T cd08250 93 FGAFAEYQVVPARHAVPVPELK-PEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCH-VIGT 170 (329)
T ss_pred CcceeEEEEechHHeEECCCCc-chhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCe-EEEE
Confidence 4899999999999999999973 33333448999999998 5678999999999997 99999999999999998 8888
Q ss_pred ecChhhhhhhhc
Q psy16556 88 KYVGIRIFPYKK 99 (100)
Q Consensus 88 ~~~~~~~~~~~~ 99 (100)
++++++.+.+++
T Consensus 171 ~~~~~~~~~~~~ 182 (329)
T cd08250 171 CSSDEKAEFLKS 182 (329)
T ss_pred eCcHHHHHHHHH
Confidence 888888776643
No 110
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.57 E-value=4e-14 Score=94.24 Aligned_cols=88 Identities=17% Similarity=0.204 Sum_probs=78.4
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~ 86 (100)
.|+|++|+.++.+.++++|+++++++++.+ .+..++|+++ +..++.+|++++|+|+ |++|++++++++..|++ |+.
T Consensus 91 ~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~-v~~ 169 (331)
T cd08273 91 VGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAE-VYG 169 (331)
T ss_pred CcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCCE-EEE
Confidence 489999999999999999999999988877 8999999998 5578999999999998 99999999999999998 888
Q ss_pred EecChhhhhhhhc
Q psy16556 87 CKYVGIRIFPYKK 99 (100)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (100)
++. +++.+++++
T Consensus 170 ~~~-~~~~~~~~~ 181 (331)
T cd08273 170 TAS-ERNHAALRE 181 (331)
T ss_pred EeC-HHHHHHHHH
Confidence 876 777776543
No 111
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.55 E-value=6.5e-14 Score=92.24 Aligned_cols=89 Identities=27% Similarity=0.380 Sum_probs=80.7
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~ 86 (100)
.|++++|+.++.+.++++|+++++++++.+ .+..++++++ ...++.+|++++|+|+ |++|++++++++..|.+ |++
T Consensus 96 ~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~-v~~ 174 (325)
T cd08253 96 QGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGAR-VIA 174 (325)
T ss_pred CcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCE-EEE
Confidence 689999999999999999999999998877 8999999998 5588999999999997 99999999999999998 899
Q ss_pred EecChhhhhhhhc
Q psy16556 87 CKYVGIRIFPYKK 99 (100)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (100)
+++++++.+.+++
T Consensus 175 ~~~~~~~~~~~~~ 187 (325)
T cd08253 175 TASSAEGAELVRQ 187 (325)
T ss_pred EeCCHHHHHHHHH
Confidence 9888888777643
No 112
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.55 E-value=8.6e-14 Score=91.78 Aligned_cols=88 Identities=26% Similarity=0.356 Sum_probs=79.2
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~ 86 (100)
+|+|++|+.++.+.++++|+++++.+++.+ .+..++|+++ +...+.++++++|+|+ |++|++++++++..|++ |++
T Consensus 91 ~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~-v~~ 169 (325)
T TIGR02824 91 GGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGAR-VFT 169 (325)
T ss_pred CCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCE-EEE
Confidence 489999999999999999999998888777 8999999987 7788999999999997 99999999999999998 888
Q ss_pred EecChhhhhhhh
Q psy16556 87 CKYVGIRIFPYK 98 (100)
Q Consensus 87 ~~~~~~~~~~~~ 98 (100)
+.+++++.+.++
T Consensus 170 ~~~~~~~~~~~~ 181 (325)
T TIGR02824 170 TAGSDEKCAACE 181 (325)
T ss_pred EeCCHHHHHHHH
Confidence 888888776654
No 113
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.55 E-value=5.3e-14 Score=94.41 Aligned_cols=87 Identities=26% Similarity=0.300 Sum_probs=74.8
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCC----CCCEEEEEcC-CHHHHHHHHHHHHcCCc
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVG----LGTSVLVLSA-GPIGLVTILAAKAYGAR 82 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~----~g~~vli~G~-G~~G~~~~~l~~~~g~~ 82 (100)
.|+|++|+.++++.++++|+++++++++.+ .+..++|+++ +...+. +|++++|+|+ |++|++++++++.+|++
T Consensus 110 ~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~ 189 (350)
T cd08248 110 QGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAH 189 (350)
T ss_pred CccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCCe
Confidence 589999999999999999999999998877 8999999998 556665 4999999997 99999999999999998
Q ss_pred EEEEEecChhhhhhhh
Q psy16556 83 VICVCKYVGIRIFPYK 98 (100)
Q Consensus 83 ~v~~~~~~~~~~~~~~ 98 (100)
|+++.++ ++.+.++
T Consensus 190 -v~~~~~~-~~~~~~~ 203 (350)
T cd08248 190 -VTTTCST-DAIPLVK 203 (350)
T ss_pred -EEEEeCc-chHHHHH
Confidence 7777654 4555544
No 114
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.55 E-value=8.3e-14 Score=91.92 Aligned_cols=88 Identities=24% Similarity=0.252 Sum_probs=77.2
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~ 86 (100)
.|+|++|+.++.+.++++|+++++++++.+ .+..++|+++ +..++.+|++++|+|+ |++|++++++++.+|++ |+.
T Consensus 95 ~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~-v~~ 173 (319)
T cd08267 95 GGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAH-VTG 173 (319)
T ss_pred CceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCE-EEE
Confidence 589999999999999999999999888877 8899999998 4556999999999998 99999999999999998 888
Q ss_pred EecChhhhhhhhc
Q psy16556 87 CKYVGIRIFPYKK 99 (100)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (100)
++++ ++.+.+++
T Consensus 174 ~~~~-~~~~~~~~ 185 (319)
T cd08267 174 VCST-RNAELVRS 185 (319)
T ss_pred EeCH-HHHHHHHH
Confidence 7754 66666543
No 115
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.54 E-value=6.6e-14 Score=93.21 Aligned_cols=79 Identities=28% Similarity=0.455 Sum_probs=72.6
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
+|+|++|+.++++.++++|+++++++++.+ .++.++|+++...++++|++++|+|+ |++|++++++++.+|.+ |+++
T Consensus 115 ~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~-v~~~ 193 (325)
T cd08264 115 NGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALKTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAE-VIAV 193 (325)
T ss_pred CCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCe-EEEE
Confidence 589999999999999999999999998887 78899999996688999999999998 99999999999999998 7777
Q ss_pred ec
Q psy16556 88 KY 89 (100)
Q Consensus 88 ~~ 89 (100)
++
T Consensus 194 ~~ 195 (325)
T cd08264 194 SR 195 (325)
T ss_pred eH
Confidence 53
No 116
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.54 E-value=9.4e-14 Score=92.44 Aligned_cols=88 Identities=19% Similarity=0.046 Sum_probs=75.8
Q ss_pred CcccceEEecC-CceEECCCCCC--hhh-hh-cchhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcE
Q psy16556 11 GNLSQFYKHAA-DFCYKLPDHLT--LEE-GA-LLEPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARV 83 (100)
Q Consensus 11 G~~ae~~~~~~-~~~~~~p~~~~--~~~-aa-~~~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~ 83 (100)
++|+||+.++. +.++++|++++ +++ ++ +..+..++|+++ +...+.++++|+|+|+ |++|++++|+++..|++
T Consensus 94 ~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~- 172 (329)
T cd05288 94 LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGAR- 172 (329)
T ss_pred cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCCE-
Confidence 47999999999 99999999985 433 34 338899999998 6678899999999997 99999999999999998
Q ss_pred EEEEecChhhhhhhhc
Q psy16556 84 ICVCKYVGIRIFPYKK 99 (100)
Q Consensus 84 v~~~~~~~~~~~~~~~ 99 (100)
|+++++++++.+++++
T Consensus 173 vi~~~~~~~~~~~~~~ 188 (329)
T cd05288 173 VVGIAGSDEKCRWLVE 188 (329)
T ss_pred EEEEeCCHHHHHHHHh
Confidence 8999888888887654
No 117
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.53 E-value=5.8e-14 Score=92.55 Aligned_cols=88 Identities=18% Similarity=0.077 Sum_probs=77.9
Q ss_pred CcccceEEecCCceEECCCCC---ChhhhhcchhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEE
Q psy16556 11 GNLSQFYKHAADFCYKLPDHL---TLEEGALLEPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVIC 85 (100)
Q Consensus 11 G~~ae~~~~~~~~~~~~p~~~---~~~~aa~~~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~ 85 (100)
.+|+||...+.+.+.|++++. ++....+.++..|||.++ +...+++|++|+|.++ |++|..+.|+||..|++ |+
T Consensus 101 ~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~r-VV 179 (340)
T COG2130 101 SGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCR-VV 179 (340)
T ss_pred ccceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCe-EE
Confidence 479999999999999998653 333344448999999999 8899999999999998 99999999999999999 99
Q ss_pred EEecChhhhhhhhc
Q psy16556 86 VCKYVGIRIFPYKK 99 (100)
Q Consensus 86 ~~~~~~~~~~~~~~ 99 (100)
.+..++||.+++++
T Consensus 180 GiaGg~eK~~~l~~ 193 (340)
T COG2130 180 GIAGGAEKCDFLTE 193 (340)
T ss_pred EecCCHHHHHHHHH
Confidence 99999999999876
No 118
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.53 E-value=1.9e-13 Score=90.19 Aligned_cols=88 Identities=27% Similarity=0.309 Sum_probs=79.4
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~ 86 (100)
+|++++|+.++.+.++++|+++++++++.+ .+..++|+++ ....+.++++++|+|+ |.+|++++++++..|++ ++.
T Consensus 96 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~-v~~ 174 (328)
T cd08268 96 YGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGAT-VIA 174 (328)
T ss_pred CccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE-EEE
Confidence 589999999999999999999999888777 8999999998 5688899999999998 99999999999999998 888
Q ss_pred EecChhhhhhhh
Q psy16556 87 CKYVGIRIFPYK 98 (100)
Q Consensus 87 ~~~~~~~~~~~~ 98 (100)
+++++++.+.++
T Consensus 175 ~~~~~~~~~~~~ 186 (328)
T cd08268 175 TTRTSEKRDALL 186 (328)
T ss_pred EcCCHHHHHHHH
Confidence 888888777654
No 119
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.52 E-value=2e-13 Score=90.68 Aligned_cols=88 Identities=25% Similarity=0.319 Sum_probs=79.5
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~ 86 (100)
.|+|++|+.++.+.++++|+++++++++.+ .+..++++++ +..++.++++++|+|+ +.+|++++++++..|.+ ++.
T Consensus 118 ~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~-v~~ 196 (342)
T cd08266 118 DGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGAT-VIA 196 (342)
T ss_pred CcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCE-EEE
Confidence 588999999999999999999999998877 7889999987 6788999999999998 79999999999999999 888
Q ss_pred EecChhhhhhhh
Q psy16556 87 CKYVGIRIFPYK 98 (100)
Q Consensus 87 ~~~~~~~~~~~~ 98 (100)
+++++++.+.++
T Consensus 197 ~~~~~~~~~~~~ 208 (342)
T cd08266 197 TAGSEDKLERAK 208 (342)
T ss_pred EeCCHHHHHHHH
Confidence 888888877654
No 120
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.52 E-value=1.5e-13 Score=90.70 Aligned_cols=87 Identities=25% Similarity=0.305 Sum_probs=78.1
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~ 86 (100)
.|+|++|+.++.+.++++|+++++++++.+ .+..++|+++ +..++.+|++++|+|+ |++|++++++++.+|.+ |+.
T Consensus 96 ~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~-v~~ 174 (326)
T cd08272 96 QGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGAR-VYA 174 (326)
T ss_pred CCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCE-EEE
Confidence 588999999999999999999999888877 7889999987 7789999999999997 99999999999999998 888
Q ss_pred EecChhhhhhhh
Q psy16556 87 CKYVGIRIFPYK 98 (100)
Q Consensus 87 ~~~~~~~~~~~~ 98 (100)
++++ ++.++++
T Consensus 175 ~~~~-~~~~~~~ 185 (326)
T cd08272 175 TASS-EKAAFAR 185 (326)
T ss_pred Eech-HHHHHHH
Confidence 8777 7776654
No 121
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.50 E-value=3e-13 Score=89.04 Aligned_cols=89 Identities=31% Similarity=0.447 Sum_probs=79.8
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~ 86 (100)
.|++++|+.++.+.++++|+++++.+++.+ .+..++++++ +...+.++++++|+|+ |++|++++++++..|++ |+.
T Consensus 91 ~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~-v~~ 169 (323)
T cd08241 91 QGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGAR-VIA 169 (323)
T ss_pred CceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCE-EEE
Confidence 488999999999999999999998888766 8899999998 5788999999999998 99999999999999999 888
Q ss_pred EecChhhhhhhhc
Q psy16556 87 CKYVGIRIFPYKK 99 (100)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (100)
++.++++.+.+++
T Consensus 170 ~~~~~~~~~~~~~ 182 (323)
T cd08241 170 AASSEEKLALARA 182 (323)
T ss_pred EeCCHHHHHHHHH
Confidence 8888888776643
No 122
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.49 E-value=5.1e-13 Score=90.01 Aligned_cols=88 Identities=23% Similarity=0.210 Sum_probs=73.1
Q ss_pred CCcccceEEecCC----ceEECCCCCChhhhhcc-hhHHHHHHHH-Hhc-CCCCCCEEEEEcC-CHHHHHHHHHHHHcC-
Q psy16556 10 HGNLSQFYKHAAD----FCYKLPDHLTLEEGALL-EPLAVGVHAC-KRS-GVGLGTSVLVLSA-GPIGLVTILAAKAYG- 80 (100)
Q Consensus 10 ~G~~ae~~~~~~~----~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~-~~~~g~~vli~G~-G~~G~~~~~l~~~~g- 80 (100)
.|+|+||++++++ .++++|+++++++++.+ ....++|+++ +.. ++++|++++|+|+ |.+|++++++++..|
T Consensus 98 ~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~ 177 (352)
T cd08247 98 QGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYN 177 (352)
T ss_pred CceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCC
Confidence 5899999999987 78999999999999887 8889999998 445 7999999999998 799999999999974
Q ss_pred CcEEEEEecChhhhhhhh
Q psy16556 81 ARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 81 ~~~v~~~~~~~~~~~~~~ 98 (100)
.+.++.+. ++++.+.++
T Consensus 178 ~~~v~~~~-~~~~~~~~~ 194 (352)
T cd08247 178 IGTVVGTC-SSRSAELNK 194 (352)
T ss_pred cceEEEEe-ChhHHHHHH
Confidence 43477765 445444443
No 123
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.47 E-value=8.9e-13 Score=87.23 Aligned_cols=87 Identities=24% Similarity=0.299 Sum_probs=76.7
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~ 86 (100)
+|+|++|+.++.+.++++|+++++.+++.+ .+..++++++ +..++.+|++++|+|+ |.+|++++++++..|++ |+.
T Consensus 93 ~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~-v~~ 171 (325)
T cd08271 93 GGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLR-VIT 171 (325)
T ss_pred CccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCE-EEE
Confidence 589999999999999999999999988877 8999999998 6688999999999998 79999999999999998 777
Q ss_pred EecChhhhhhhh
Q psy16556 87 CKYVGIRIFPYK 98 (100)
Q Consensus 87 ~~~~~~~~~~~~ 98 (100)
+. ++++.+.++
T Consensus 172 ~~-~~~~~~~~~ 182 (325)
T cd08271 172 TC-SKRNFEYVK 182 (325)
T ss_pred EE-cHHHHHHHH
Confidence 65 566666543
No 124
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.45 E-value=7.4e-13 Score=86.77 Aligned_cols=87 Identities=26% Similarity=0.295 Sum_probs=75.8
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV 86 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~ 86 (100)
+|+|++|+.++.+.++++|+++++++++.+ ....++++++ +...+.++++++|+|+ |++|++++++++..|.+ |+.
T Consensus 96 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~-v~~ 174 (309)
T cd05289 96 GGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGAR-VIA 174 (309)
T ss_pred CCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEE
Confidence 589999999999999999999999888877 7888999998 4556899999999998 99999999999999998 777
Q ss_pred EecChhhhhhhh
Q psy16556 87 CKYVGIRIFPYK 98 (100)
Q Consensus 87 ~~~~~~~~~~~~ 98 (100)
++.++ +.++++
T Consensus 175 ~~~~~-~~~~~~ 185 (309)
T cd05289 175 TASAA-NADFLR 185 (309)
T ss_pred Eecch-hHHHHH
Confidence 77666 665543
No 125
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.36 E-value=1.4e-11 Score=81.91 Aligned_cols=70 Identities=30% Similarity=0.377 Sum_probs=65.1
Q ss_pred CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHc
Q psy16556 10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAY 79 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~ 79 (100)
+|+|++|+.++.+.++++|+++++++++.+ .+..++|+++ +..++++|++|+|+|+ |++|++++++++..
T Consensus 90 ~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~ 162 (337)
T cd08275 90 FGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTV 162 (337)
T ss_pred CCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHc
Confidence 489999999999999999999999888877 7999999998 6788999999999998 99999999999999
No 126
>KOG1196|consensus
Probab=99.29 E-value=2.4e-11 Score=80.22 Aligned_cols=87 Identities=16% Similarity=0.115 Sum_probs=72.0
Q ss_pred cccceEEecCCc--eEECCC--CCChhhhh--cchhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcE
Q psy16556 12 NLSQFYKHAADF--CYKLPD--HLTLEEGA--LLEPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARV 83 (100)
Q Consensus 12 ~~ae~~~~~~~~--~~~~p~--~~~~~~aa--~~~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~ 83 (100)
+|.||.+++.+. .+++|. +.++.... +-.+..|||..+ +...+++|++++|.|+ |.+|+++-|+|+.+|+.
T Consensus 102 gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~- 180 (343)
T KOG1196|consen 102 GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGCY- 180 (343)
T ss_pred cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCCE-
Confidence 699999997653 455544 44444433 338999999999 8889999999999998 99999999999999997
Q ss_pred EEEEecChhhhhhhhc
Q psy16556 84 ICVCKYVGIRIFPYKK 99 (100)
Q Consensus 84 v~~~~~~~~~~~~~~~ 99 (100)
|+....++||.++++.
T Consensus 181 VVGsaGS~EKv~ll~~ 196 (343)
T KOG1196|consen 181 VVGSAGSKEKVDLLKT 196 (343)
T ss_pred EEEecCChhhhhhhHh
Confidence 9999999999988764
No 127
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.68 E-value=6.2e-08 Score=68.79 Aligned_cols=46 Identities=26% Similarity=0.167 Sum_probs=42.6
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556 54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100 (100)
Q Consensus 54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l 100 (100)
..++++|+|+|+|++|+++++.++.+|++ |+++|.+++|++.++++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~-V~a~D~~~~rle~aesl 207 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAI-VRAFDTRPEVAEQVESM 207 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHc
Confidence 45799999999999999999999999996 99999999999998764
No 128
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.55 E-value=4.5e-08 Score=65.77 Aligned_cols=76 Identities=21% Similarity=0.174 Sum_probs=62.0
Q ss_pred ceEECCCCCChhhhhcchhHHHHHHHHHhcCC----CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhh-hhh
Q psy16556 23 FCYKLPDHLTLEEGALLEPLAVGVHACKRSGV----GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRI-FPY 97 (100)
Q Consensus 23 ~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~----~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~-~~~ 97 (100)
..+++|+.+..+.++...+.++++++++.... .++++|+|+|+|.+|..+++.++..|..+|++++++++|. +++
T Consensus 140 ~a~~~~k~vr~et~i~~~~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la 219 (311)
T cd05213 140 KAIKVGKRVRTETGISRGAVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELA 219 (311)
T ss_pred HHHHHHHHHhhhcCCCCCCcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 45678888988888888888888888854432 4799999999999999999999998877799999998875 444
Q ss_pred h
Q psy16556 98 K 98 (100)
Q Consensus 98 ~ 98 (100)
+
T Consensus 220 ~ 220 (311)
T cd05213 220 K 220 (311)
T ss_pred H
Confidence 3
No 129
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.45 E-value=1.1e-06 Score=61.22 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=45.3
Q ss_pred HHHHH-HhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556 45 GVHAC-KRSG-VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 45 a~~~~-~~~~-~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~ 99 (100)
.+.++ +..+ ..+|++|+|+|.|++|+.+++.++.+|++ |++++.++.|.+.+++
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~-ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGAR-VIVTEVDPICALQAAM 243 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEECChhhHHHHHh
Confidence 44555 4434 46899999999999999999999999997 9999999999887764
No 130
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.31 E-value=7.9e-07 Score=62.06 Aligned_cols=70 Identities=23% Similarity=0.206 Sum_probs=52.8
Q ss_pred ECCCCCChhhhhcchhHHHHHHHHHhcC----CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 26 KLPDHLTLEEGALLEPLAVGVHACKRSG----VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 26 ~~p~~~~~~~aa~~~~~~ta~~~~~~~~----~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
++|+.+..+.+....+.++++++++... ..++++|+|+|+|.+|..+++.++..|+++|+++++++++.+
T Consensus 147 ~~~k~v~~~t~i~~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~ 220 (423)
T PRK00045 147 SVAKRVRTETGIGAGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAE 220 (423)
T ss_pred HHHhhHhhhcCCCCCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHH
Confidence 3444444444433467788888885432 357899999999999999999999999876999999988854
No 131
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.19 E-value=1.5e-05 Score=55.75 Aligned_cols=53 Identities=25% Similarity=0.256 Sum_probs=43.2
Q ss_pred HHHHHHHHhc-CCC-CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 43 AVGVHACKRS-GVG-LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 43 ~ta~~~~~~~-~~~-~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
-..|+++... ++. .|++|+|+|.|.+|+.+++.++.+|++ |++++.++.|...
T Consensus 196 ~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~-ViV~d~dp~ra~~ 250 (425)
T PRK05476 196 ESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGAR-VIVTEVDPICALQ 250 (425)
T ss_pred hhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCchhhHH
Confidence 3356666433 544 899999999999999999999999997 9999988877544
No 132
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.19 E-value=9.8e-06 Score=48.31 Aligned_cols=44 Identities=27% Similarity=0.238 Sum_probs=39.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
-.+++++|+|+|++|..++..+...|+++|+++.|+.+|.+.+.
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~ 53 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALA 53 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHH
Confidence 36899999999999999999999999999999999998876553
No 133
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.17 E-value=5.5e-06 Score=59.07 Aligned_cols=44 Identities=27% Similarity=0.219 Sum_probs=40.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l 100 (100)
++++++|+|+|.+|++++++++.+|++ |++++.++++++.++++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~-V~v~d~~~~rle~a~~l 206 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAI-VRAFDTRPEVKEQVQSM 206 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHc
Confidence 579999999999999999999999998 99999999999888753
No 134
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.01 E-value=3.3e-05 Score=53.80 Aligned_cols=52 Identities=23% Similarity=0.290 Sum_probs=41.8
Q ss_pred HHHHH-HhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 45 GVHAC-KRSG-VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 45 a~~~~-~~~~-~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
.+.++ +..+ ...|++|+|+|.|++|+.+++.++.+|++ |++++.++.+...+
T Consensus 181 ~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~-ViV~d~dp~r~~~A 234 (406)
T TIGR00936 181 TIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGAR-VIVTEVDPIRALEA 234 (406)
T ss_pred HHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCE-EEEEeCChhhHHHH
Confidence 44444 3334 46899999999999999999999999998 99998888775443
No 135
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.00 E-value=1.7e-05 Score=57.20 Aligned_cols=37 Identities=22% Similarity=0.378 Sum_probs=33.1
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
..++|++|+|+|+|+.|+++++.++..|++ |++++..
T Consensus 133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~-V~v~e~~ 169 (564)
T PRK12771 133 APDTGKRVAVIGGGPAGLSAAYHLRRMGHA-VTIFEAG 169 (564)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 367899999999999999999999999998 8888753
No 136
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.97 E-value=1.4e-05 Score=55.90 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=52.3
Q ss_pred CCcccceEEecCCceEE---C-CCCCChhhhhcchhHHHHHHHH----HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q psy16556 10 HGNLSQFYKHAADFCYK---L-PDHLTLEEGALLEPLAVGVHAC----KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA 81 (100)
Q Consensus 10 ~G~~ae~~~~~~~~~~~---~-p~~~~~~~aa~~~~~~ta~~~~----~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~ 81 (100)
++.|++++.++. .+.. + +..++ .++.++ +..+..++++++|+|+|.+|..+++.++..|+
T Consensus 137 ~~lf~~a~~~~k-~vr~~t~i~~~~vS-----------v~~~Av~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~ 204 (417)
T TIGR01035 137 ERLFQKAFSVGK-RVRTETDISAGAVS-----------ISSAAVELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGV 204 (417)
T ss_pred HHHHHHHHHHhh-hhhhhcCCCCCCcC-----------HHHHHHHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCC
Confidence 567888887776 3322 3 22222 233332 33445678999999999999999999999997
Q ss_pred cEEEEEecChhhhh
Q psy16556 82 RVICVCKYVGIRIF 95 (100)
Q Consensus 82 ~~v~~~~~~~~~~~ 95 (100)
.+|++++++.++.+
T Consensus 205 ~~V~v~~rs~~ra~ 218 (417)
T TIGR01035 205 GKILIANRTYERAE 218 (417)
T ss_pred CEEEEEeCCHHHHH
Confidence 66999999888754
No 137
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.85 E-value=0.00013 Score=48.91 Aligned_cols=42 Identities=29% Similarity=0.349 Sum_probs=37.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
.+++++|+|.|.+|+.+++.++.+|++ |++.++++++.+.++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~-V~v~~r~~~~~~~~~ 192 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGAN-VTVGARKSAHLARIT 192 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHH
Confidence 589999999999999999999999996 999999988766544
No 138
>PLN02494 adenosylhomocysteinase
Probab=97.82 E-value=0.0001 Score=52.16 Aligned_cols=50 Identities=24% Similarity=0.246 Sum_probs=40.8
Q ss_pred HHHH-HhcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 46 VHAC-KRSGV-GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 46 ~~~~-~~~~~-~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
+.++ +..++ -.|++++|+|.|.+|+.+++.++.+|++ |++++.++.+...
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~-VIV~e~dp~r~~e 292 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGAR-VIVTEIDPICALQ 292 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCchhhHH
Confidence 4555 44343 5799999999999999999999999997 9999888876433
No 139
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.82 E-value=0.00024 Score=46.37 Aligned_cols=83 Identities=18% Similarity=0.208 Sum_probs=53.9
Q ss_pred cccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 12 NLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 12 ~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
+|.+|-. +...++.+++++++..+..- ........+. ..+.++++|+-+|+|. |.+++.+++ .|..+|+++|.++
T Consensus 78 ~~~~~~~-~~~~~i~i~p~~afgtg~h~-tt~~~l~~l~-~~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDis~ 152 (250)
T PRK00517 78 SWEDPPD-PDEINIELDPGMAFGTGTHP-TTRLCLEALE-KLVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDIDP 152 (250)
T ss_pred CCcCCCC-CCeEEEEECCCCccCCCCCH-HHHHHHHHHH-hhcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEECCH
Confidence 4555533 55667778877776654411 1111222232 1256899999999987 877776554 6776699999999
Q ss_pred hhhhhhhc
Q psy16556 92 IRIFPYKK 99 (100)
Q Consensus 92 ~~~~~~~~ 99 (100)
...+.+++
T Consensus 153 ~~l~~A~~ 160 (250)
T PRK00517 153 QAVEAARE 160 (250)
T ss_pred HHHHHHHH
Confidence 98887654
No 140
>PRK08324 short chain dehydrogenase; Validated
Probab=97.79 E-value=6.2e-05 Score=55.48 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=54.7
Q ss_pred cccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 12 NLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 12 ~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
++++|..+|+..++.+ +.++.+++.+... ...+.-+|++++|.|+ |++|..+++.+...|++ |++++++
T Consensus 386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~--------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~-Vvl~~r~ 455 (681)
T PRK08324 386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRM--------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGAC-VVLADLD 455 (681)
T ss_pred hcCCccCCChhhhcce-eeehhhhhhhhcC--------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCE-EEEEeCC
Confidence 4567887887777776 5566666542200 0122346899999997 99999999999999997 9999998
Q ss_pred hhhhhhh
Q psy16556 91 GIRIFPY 97 (100)
Q Consensus 91 ~~~~~~~ 97 (100)
+++.+.+
T Consensus 456 ~~~~~~~ 462 (681)
T PRK08324 456 EEAAEAA 462 (681)
T ss_pred HHHHHHH
Confidence 8776543
No 141
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.72 E-value=0.00011 Score=50.73 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
++.+|+|+|+|.+|+.+++.++.+|++ |+++++++++.+.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~-V~v~d~~~~~~~~l 206 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGAT-VTILDINIDRLRQL 206 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCe-EEEEECCHHHHHHH
Confidence 346699999999999999999999997 99999988876654
No 142
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=97.71 E-value=0.00028 Score=46.88 Aligned_cols=50 Identities=10% Similarity=-0.103 Sum_probs=40.6
Q ss_pred HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 48 ~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
+++......+++++|+|+|+.+.+++..++..|+++|+++.++++|.+.+
T Consensus 113 ~L~~~~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 113 LLASYQVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred HHHhcCCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 44333445567999999999999999999999998899999998877654
No 143
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.65 E-value=0.00021 Score=44.07 Aligned_cols=41 Identities=27% Similarity=0.259 Sum_probs=34.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
..+|+|+|+|.+|+.++++++.+|++ ++..+.++++.+..+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~-v~~~d~~~~~~~~~~ 60 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAE-VVVPDERPERLRQLE 60 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-E-EEEEESSHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCE-EEeccCCHHHHHhhh
Confidence 47899999999999999999999999 999999888776554
No 144
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.62 E-value=0.00016 Score=48.25 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=42.8
Q ss_pred hhHHHHHHHH----HhcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 40 EPLAVGVHAC----KRSGV-GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 40 ~~~~ta~~~~----~~~~~-~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
...++|.+++ +.... -.|++++|+|.|.+|..++..++.+|++ |++.++++++.+.+
T Consensus 129 n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~-V~v~~R~~~~~~~~ 190 (287)
T TIGR02853 129 NSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGAR-VFVGARSSADLARI 190 (287)
T ss_pred ccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence 4455565554 22222 2579999999999999999999999997 99999888765443
No 145
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.61 E-value=0.00041 Score=46.29 Aligned_cols=43 Identities=19% Similarity=0.131 Sum_probs=37.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
..+++++|+|+|++|.+++..+...|+++|++++++++|.+.+
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~l 167 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAAL 167 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 3568999999999999999999999998799999998877654
No 146
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.60 E-value=0.00024 Score=45.10 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=37.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
-.|++++|+|.|.+|..+++.+...|++ |++.++++++.+.+
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~-Vvv~D~~~~~~~~~ 67 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAK-LIVADINEEAVARA 67 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHH
Confidence 3678999999999999999999999998 88999888876654
No 147
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.58 E-value=0.00091 Score=47.57 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=48.3
Q ss_pred eEECCCCCChhhhhcc-hhHHHHHHHH-HhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556 24 CYKLPDHLTLEEGALL-EPLAVGVHAC-KRSG-VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRI 94 (100)
Q Consensus 24 ~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~-~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~ 94 (100)
+..+|+..+...+=.. ......+.++ +..+ .-.|++++|+|.|.+|..+++.++.+|++ |+++++++.+.
T Consensus 218 V~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~-ViV~e~dp~~a 290 (476)
T PTZ00075 218 AINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGAR-VVVTEIDPICA 290 (476)
T ss_pred EEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCchhH
Confidence 4556776544333212 2222333444 4433 45799999999999999999999999998 99998877665
No 148
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.54 E-value=0.00034 Score=46.58 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=37.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
.+++++|+|+|+.+.+++..+...|+++|+++.++++|.+.+
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~L 165 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRL 165 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 578999999999999999999999998899999998877654
No 149
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.50 E-value=0.00038 Score=44.41 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=35.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
.+++++|.|+ |.+|..+++.+...|++ |+.+++++++.+.+
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~-V~~~~r~~~~~~~~ 45 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQ-VCINSRNENKLKRM 45 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence 4689999998 89999999999999998 99998888766543
No 150
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.50 E-value=0.00035 Score=49.80 Aligned_cols=43 Identities=33% Similarity=0.393 Sum_probs=36.6
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
+.++++|+|+|.|..|++++++++..|++ |++.|.++++.+.+
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~~-v~~~D~~~~~~~~l 51 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFGAR-PTVCDDDPDALRPH 51 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHH
Confidence 55789999999999999999999999998 88898776655433
No 151
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.50 E-value=0.00044 Score=45.88 Aligned_cols=43 Identities=23% Similarity=0.216 Sum_probs=37.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
..+++++|+|+|++|.+++..+...|+.+|+++.+++++.+.+
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l 163 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEEL 163 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 4578999999999999999999999976699999998876544
No 152
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.48 E-value=0.00042 Score=43.08 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=34.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
.|++|.|+|.|.+|+.+++.++.+|.+ |++.+++....+
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~-V~~~d~~~~~~~ 73 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMR-VIGYDRSPKPEE 73 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-E-EEEEESSCHHHH
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCce-eEEecccCChhh
Confidence 589999999999999999999999998 999998877544
No 153
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.45 E-value=0.0005 Score=45.92 Aligned_cols=44 Identities=27% Similarity=0.249 Sum_probs=39.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
.++++++|+|+|+.+.+++.-++..|+++|+++.|+.+|.+.+.
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La 167 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELA 167 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 35899999999999999999999999887999999998876654
No 154
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.44 E-value=0.0009 Score=44.68 Aligned_cols=43 Identities=21% Similarity=0.161 Sum_probs=36.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
..+++++|+|+|+.+.+++..+...|+++++++.++++|.+.+
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~L 167 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL 167 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHH
Confidence 3578999999999999998888889998899999988876654
No 155
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.43 E-value=0.00042 Score=45.61 Aligned_cols=49 Identities=20% Similarity=0.227 Sum_probs=41.0
Q ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCc-EEEEEecChhhhhhhhc
Q psy16556 50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGAR-VICVCKYVGIRIFPYKK 99 (100)
Q Consensus 50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~-~v~~~~~~~~~~~~~~~ 99 (100)
....+++|++||.+|+|+ |..++++++..|.+ +|+++|.+++.++.+++
T Consensus 71 ~~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~ 120 (272)
T PRK11873 71 ALAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARA 120 (272)
T ss_pred hhccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH
Confidence 346788999999999988 88888888887763 59999999998888764
No 156
>PRK05993 short chain dehydrogenase; Provisional
Probab=97.39 E-value=0.00071 Score=44.45 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=35.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
.+++++|.|+ |++|..+++.+...|.+ |+++++++++.+.+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~-Vi~~~r~~~~~~~l 44 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWR-VFATCRKEEDVAAL 44 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence 4678999998 99999999988889998 99999988776544
No 157
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=97.37 E-value=0.00079 Score=44.56 Aligned_cols=44 Identities=14% Similarity=0.065 Sum_probs=39.0
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
...+++++|.|+ +++|...+......|.+ ++.+.|+++|++.+.
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~-liLvaR~~~kL~~la 47 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYN-LILVARREDKLEALA 47 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCcHHHHHHHH
Confidence 356789999999 99999999999999999 999999999987664
No 158
>PRK08017 oxidoreductase; Provisional
Probab=97.36 E-value=0.00065 Score=43.77 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=34.4
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
++++|.|+ |++|..+++.+...|.+ |+++++++++.+.++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~-v~~~~r~~~~~~~~~ 43 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYR-VLAACRKPDDVARMN 43 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHhHHHH
Confidence 57999998 99999999999999998 888889888776543
No 159
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.36 E-value=0.0012 Score=44.23 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
.+++++|+|+|+.+.+++..+...|+++|+++.++++
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 5789999999999998777777789988999988854
No 160
>PRK06949 short chain dehydrogenase; Provisional
Probab=97.35 E-value=0.00075 Score=43.53 Aligned_cols=41 Identities=20% Similarity=0.125 Sum_probs=35.3
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
-.+++++|.|+ |.+|..++..+...|++ |+++++++++.+.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~-Vi~~~r~~~~~~~ 48 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGAK-VVLASRRVERLKE 48 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 35799999998 99999999999889998 9999888877643
No 161
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.33 E-value=0.0023 Score=38.48 Aligned_cols=49 Identities=24% Similarity=0.261 Sum_probs=37.5
Q ss_pred HHHhcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 48 ACKRSGV-GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 48 ~~~~~~~-~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
+++.... ..+++++|+|+|.+|...++.+...|..+|+++++++++.+.
T Consensus 9 a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~ 58 (155)
T cd01065 9 ALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKA 58 (155)
T ss_pred HHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHH
Confidence 4444343 457899999999999999988888875458999888877654
No 162
>PRK06057 short chain dehydrogenase; Provisional
Probab=97.30 E-value=0.00093 Score=43.23 Aligned_cols=40 Identities=23% Similarity=0.145 Sum_probs=34.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
+|++++|.|+ |++|..+++.....|++ |+++++++++.+.
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~~-v~~~~r~~~~~~~ 46 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGAT-VVVGDIDPEAGKA 46 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHH
Confidence 4789999998 99999999999999998 8888888776543
No 163
>PRK05872 short chain dehydrogenase; Provisional
Probab=97.28 E-value=0.00098 Score=44.31 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=35.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.|++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~l~~ 48 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGAK-LALVDLEEAELAA 48 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 5789999998 99999999999999998 8989888877654
No 164
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.28 E-value=0.00097 Score=42.75 Aligned_cols=40 Identities=25% Similarity=0.113 Sum_probs=34.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|.|+ |.+|..+++.+...|.+ |+++++++++.+.
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~~~~~~~ 44 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRNEEAAER 44 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 4678999998 99999999988888998 9999998876654
No 165
>PRK04148 hypothetical protein; Provisional
Probab=97.28 E-value=0.00075 Score=40.34 Aligned_cols=45 Identities=18% Similarity=0.114 Sum_probs=36.2
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556 53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~ 99 (100)
...++.+++++|.| .|..+++.+...|.+ |+++|.+++..+.+++
T Consensus 13 ~~~~~~kileIG~G-fG~~vA~~L~~~G~~-ViaIDi~~~aV~~a~~ 57 (134)
T PRK04148 13 EKGKNKKIVELGIG-FYFKVAKKLKESGFD-VIVIDINEKAVEKAKK 57 (134)
T ss_pred ccccCCEEEEEEec-CCHHHHHHHHHCCCE-EEEEECCHHHHHHHHH
Confidence 33457899999999 887666666688998 9999999998876654
No 166
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=97.26 E-value=0.0011 Score=43.29 Aligned_cols=42 Identities=24% Similarity=0.240 Sum_probs=37.7
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
+++.++|.|+ +++|.++++.....|++ |+.+.++.+|++.+.
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G~~-vvl~aRR~drL~~la 47 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAGAK-VVLAARREERLEALA 47 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCCCe-EEEEeccHHHHHHHH
Confidence 3578899999 89999999999999999 999999999988764
No 167
>PRK07814 short chain dehydrogenase; Provisional
Probab=97.26 E-value=0.0011 Score=43.21 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=33.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
++++++|.|+ |++|..+++.+...|++ |+.+++++++.+
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~~-Vi~~~r~~~~~~ 48 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGAD-VLIAARTESQLD 48 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence 5789999998 89999999998889997 998988877654
No 168
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=97.25 E-value=0.00093 Score=42.88 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=38.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~ 99 (100)
-|.+|||.|+ .++|+...+-....|-+ ||++.+++++++.+++
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elgN~-VIi~gR~e~~L~e~~~ 47 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELGNT-VIICGRNEERLAEAKA 47 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhCCE-EEEecCcHHHHHHHHh
Confidence 4789999998 79999999988899998 9999999999987764
No 169
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.25 E-value=0.0012 Score=42.39 Aligned_cols=39 Identities=8% Similarity=0.096 Sum_probs=33.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
++++++|.|+ |++|..+++.+...|.+ |+.+++++++.+
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~-vi~~~r~~~~~~ 43 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGAK-LALIDLNQEKLE 43 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence 4789999998 99999999999889997 888888876654
No 170
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.24 E-value=0.0011 Score=48.24 Aligned_cols=50 Identities=20% Similarity=0.131 Sum_probs=40.8
Q ss_pred HHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 46 VHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 46 ~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
..+. ...+.+.|++++|.|+ |.+|..+++.+...|.+ |+++++++++.+.
T Consensus 68 ~~~~~~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~-Vval~Rn~ekl~~ 119 (576)
T PLN03209 68 IEAIPKELDTKDEDLAFVAGATGKVGSRTVRELLKLGFR-VRAGVRSAQRAES 119 (576)
T ss_pred hhccccccccCCCCEEEEECCCCHHHHHHHHHHHHCCCe-EEEEeCCHHHHHH
Confidence 3344 4566778999999998 99999999998889998 8888888887643
No 171
>PLN02780 ketoreductase/ oxidoreductase
Probab=97.24 E-value=0.0012 Score=44.66 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=35.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
.|++++|.|+ +++|...+......|++ |+.+++++++.+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~-Vil~~R~~~~l~~~ 93 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLN-LVLVARNPDKLKDV 93 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCC-EEEEECCHHHHHHH
Confidence 5899999998 89999988888888998 99999998877543
No 172
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.23 E-value=0.0024 Score=40.07 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=33.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+.+++|+|+ |++|..++..+...|.+ |+++.+++++.+.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~-V~l~~R~~~~~~~ 67 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGAR-VVLVGRDLERAQK 67 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCCHHHHHH
Confidence 5789999997 99999988888888876 8888888776554
No 173
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=97.23 E-value=0.0012 Score=42.85 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=35.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
++++++|.|+ +++|..+++.+...|++ |+.+++++++.+.+
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~ 46 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGAR-VAVLERSAEKLASL 46 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence 4789999998 89999999998899998 88898887766543
No 174
>PRK08339 short chain dehydrogenase; Provisional
Probab=97.22 E-value=0.0012 Score=43.18 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=34.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.|++++|.|+ +++|..+++.+...|++ |+++++++++.+.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~ 47 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGAD-VILLSRNEENLKK 47 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 4789999998 89999999999999998 8888888776543
No 175
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.21 E-value=0.0015 Score=43.63 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
..+++++|+|+|++|.+++..+...|+++|+++.+++
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 3578999999999999998888889998899998875
No 176
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.21 E-value=0.0012 Score=41.19 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=32.5
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
+|.|+|+|.+|...+.++...|.+ |...+.+++.++.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~~l~~~~ 39 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYE-VTLYDRSPEALERAR 39 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSE-EEEE-SSHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCc-EEEEECChHHHHhhh
Confidence 588999999999999998888999 999999999876654
No 177
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.20 E-value=0.0031 Score=38.88 Aligned_cols=51 Identities=25% Similarity=0.303 Sum_probs=36.6
Q ss_pred HHHHH-Hhc-CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 45 GVHAC-KRS-GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 45 a~~~~-~~~-~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+.++ +.. .+-.|++++|.|-|.+|.-+++.++.+|++ |++++.+|-+.-.
T Consensus 9 ~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~-V~V~e~DPi~alq 61 (162)
T PF00670_consen 9 LVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGAR-VTVTEIDPIRALQ 61 (162)
T ss_dssp HHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-E-EEEE-SSHHHHHH
T ss_pred HHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCE-EEEEECChHHHHH
Confidence 34444 333 356899999999999999999999999999 9999999876543
No 178
>PRK05866 short chain dehydrogenase; Provisional
Probab=97.20 E-value=0.0014 Score=43.68 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=34.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|.|+ |++|..+++.+...|.+ |+++++++++.+.
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~~-Vi~~~R~~~~l~~ 79 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGAT-VVAVARREDLLDA 79 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence 4688999998 99999999988888998 9999998876543
No 179
>PRK07326 short chain dehydrogenase; Provisional
Probab=97.19 E-value=0.0013 Score=41.90 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=33.9
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|.|+ |.+|..+++.+...|.+ |+++++++++.+.
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r~~~~~~~ 45 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGYK-VAITARDQKELEE 45 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeCCHHHHHH
Confidence 4688999998 99999999888888998 9999888876543
No 180
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=97.19 E-value=0.0014 Score=42.60 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=34.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
++++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~l 45 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGAR-VAVLDKSAAGLQEL 45 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence 4789999998 89999999998889998 88888887665443
No 181
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=97.18 E-value=0.0015 Score=42.24 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=33.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
.+++++|.|+ |.+|..+++.+...|++ |+.+++++++.+
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~-V~~~~r~~~~~~ 48 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGAE-VILNGRDPAKLA 48 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHH
Confidence 4789999998 99999999988888998 888888876654
No 182
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=97.17 E-value=0.0004 Score=41.58 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=28.7
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 60 VLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 60 vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
++|+|+|.++..++++++.+|++ |++++.++++..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~-v~v~d~r~e~~~ 35 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFR-VTVVDPRPERFP 35 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEE-EEEEES-CCC-T
T ss_pred CEEEeCcHHHHHHHHHHHhCCCE-EEEEcCCccccC
Confidence 57889999999999999999999 999988877544
No 183
>PRK07831 short chain dehydrogenase; Provisional
Probab=97.17 E-value=0.0015 Score=42.45 Aligned_cols=42 Identities=33% Similarity=0.330 Sum_probs=34.9
Q ss_pred CCCCCEEEEEcC-C-HHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 54 VGLGTSVLVLSA-G-PIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 54 ~~~g~~vli~G~-G-~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
+..+++++|.|+ | ++|..+++.+...|++ |+++++++++.+.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~~~~~~~~ 57 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDIHERRLGE 57 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeCCHHHHHH
Confidence 345789999997 7 7999999999999998 8888887766543
No 184
>PRK07062 short chain dehydrogenase; Provisional
Probab=97.17 E-value=0.0015 Score=42.38 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=34.7
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|.|+ +++|..+++.....|++ |+.+++++++.+.
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~ 47 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDEERLAS 47 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHH
Confidence 4789999998 89999999999999998 9999888876553
No 185
>PRK06139 short chain dehydrogenase; Provisional
Probab=97.16 E-value=0.0013 Score=44.58 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=35.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|.|+ |++|..+++.+...|++ |+++++++++++.
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R~~~~l~~ 46 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGAR-LVLAARDEEALQA 46 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence 4689999998 89999999999999998 8899898887654
No 186
>PRK12828 short chain dehydrogenase; Provisional
Probab=97.15 E-value=0.0015 Score=41.46 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=32.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR 93 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~ 93 (100)
++++++|.|+ |.+|..+++.+...|++ |+.+++++++
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~~-v~~~~r~~~~ 43 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGAR-VALIGRGAAP 43 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCCe-EEEEeCChHh
Confidence 3789999998 99999999988888998 9999887665
No 187
>PRK07060 short chain dehydrogenase; Provisional
Probab=97.15 E-value=0.0017 Score=41.57 Aligned_cols=40 Identities=30% Similarity=0.295 Sum_probs=34.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
++++++|.|+ |.+|..+++.+...|.+ |+++++++++.+.
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~-V~~~~r~~~~~~~ 48 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGAR-VVAAARNAAALDR 48 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 4689999998 89999999999999998 8889888766543
No 188
>PRK12829 short chain dehydrogenase; Provisional
Probab=97.14 E-value=0.0015 Score=42.21 Aligned_cols=42 Identities=29% Similarity=0.266 Sum_probs=35.4
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.-++++++|.|+ |.+|..+++.+...|.+ |+.+++++++.+.
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r~~~~~~~ 50 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDVSEAALAA 50 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 357789999998 99999999999999998 9999887765543
No 189
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=97.14 E-value=0.0017 Score=42.04 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=34.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|.|+ |.+|..+++.+...|++ |+.+++++++.+.
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~~-V~~~~r~~~~~~~ 51 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGAR-VVLSARKAEELEE 51 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHH
Confidence 4789999998 99999999998889998 8988888776543
No 190
>PRK06180 short chain dehydrogenase; Provisional
Probab=97.14 E-value=0.0019 Score=42.42 Aligned_cols=40 Identities=18% Similarity=0.010 Sum_probs=34.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|.|+ |++|..+++.+...|.+ |+++++++++.+.
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~ 43 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHR-VVGTVRSEAARAD 43 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCE-EEEEeCCHHHHHH
Confidence 4678999998 99999999988888998 9999888876654
No 191
>PRK05867 short chain dehydrogenase; Provisional
Probab=97.13 E-value=0.0017 Score=41.98 Aligned_cols=40 Identities=23% Similarity=0.165 Sum_probs=34.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|.|+ |++|..+++.+...|++ |+.+++++++.+.
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~ 48 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQ-VAIAARHLDALEK 48 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCHHHHHH
Confidence 4789999998 89999999999899998 8888888776543
No 192
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=97.13 E-value=0.0019 Score=41.48 Aligned_cols=41 Identities=20% Similarity=0.130 Sum_probs=34.5
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
..++++++|.|+ |.+|..+++.+...|++ |+++++++++.+
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~-Vi~~~r~~~~~~ 50 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGAT-VILLGRTEEKLE 50 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCc-EEEEeCCHHHHH
Confidence 457899999998 99999998888888997 899988876543
No 193
>PRK07576 short chain dehydrogenase; Provisional
Probab=97.13 E-value=0.0018 Score=42.27 Aligned_cols=39 Identities=23% Similarity=0.234 Sum_probs=33.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
++++++|.|+ |++|..+++.+...|++ |+.+++++++.+
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~ 47 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRSQEKVD 47 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence 5789999998 99999999988889998 999988876653
No 194
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.13 E-value=0.0039 Score=43.78 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=37.8
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
+--.+++++|+|+|.+|.+++..+...|++.++++.++.+|.+.+
T Consensus 177 ~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~L 221 (414)
T PRK13940 177 DNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKI 221 (414)
T ss_pred cCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 334678999999999999999999999988799998887775443
No 195
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=97.13 E-value=0.0015 Score=42.87 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=34.7
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
...+-.+++|+|+|.++..++++++.+|++ |+++|.+++
T Consensus 96 ~~~p~~~L~IfGaG~va~~la~la~~lGf~-V~v~D~R~~ 134 (246)
T TIGR02964 96 EAPPAPHVVLFGAGHVGRALVRALAPLPCR-VTWVDSREA 134 (246)
T ss_pred ccCCCCEEEEECCcHHHHHHHHHHhcCCCE-EEEEeCCcc
Confidence 346778999999999999999999999999 888887765
No 196
>PRK07825 short chain dehydrogenase; Provisional
Probab=97.12 E-value=0.0018 Score=42.27 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=33.6
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r~~~~~~~ 44 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGAR-VAIGDLDEALAKE 44 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence 678999998 99999999888888998 8888888877653
No 197
>PRK08703 short chain dehydrogenase; Provisional
Probab=97.11 E-value=0.0017 Score=41.52 Aligned_cols=39 Identities=21% Similarity=0.157 Sum_probs=33.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
++++++|.|+ |++|..+++.....|.+ |+++++++++.+
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~~-V~~~~r~~~~~~ 44 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGAT-VILVARHQKKLE 44 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCE-EEEEeCChHHHH
Confidence 4679999998 99999999988889998 999988887654
No 198
>PRK09072 short chain dehydrogenase; Provisional
Probab=97.11 E-value=0.0019 Score=41.96 Aligned_cols=41 Identities=27% Similarity=0.247 Sum_probs=34.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
++++++|.|+ |++|..++..+...|++ |+++++++++.+.+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~-V~~~~r~~~~~~~~ 45 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGAR-LLLVGRNAEKLEAL 45 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence 4678999998 99999999988889998 99998887765433
No 199
>PRK09291 short chain dehydrogenase; Provisional
Probab=97.11 E-value=0.0018 Score=41.73 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=32.3
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
+++++|.|+ |.+|..+++.+...|++ |+++.+++++.+
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~-v~~~~r~~~~~~ 40 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHN-VIAGVQIAPQVT 40 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence 468999998 99999999999999998 888888766543
No 200
>PRK07890 short chain dehydrogenase; Provisional
Probab=97.11 E-value=0.0017 Score=41.85 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=34.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|.|+ |++|..++..+...|.+ |+.+++++++.+.
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~-V~~~~r~~~~~~~ 44 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGAD-VVLAARTAERLDE 44 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCE-EEEEeCCHHHHHH
Confidence 5689999998 89999999998899998 8888888776543
No 201
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.11 E-value=0.0048 Score=39.91 Aligned_cols=44 Identities=25% Similarity=0.216 Sum_probs=35.8
Q ss_pred HHHHhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCc--EEEEEecC
Q psy16556 47 HACKRSG-VGLGTSVLVLSAGPIGLVTILAAKAYGAR--VICVCKYV 90 (100)
Q Consensus 47 ~~~~~~~-~~~g~~vli~G~G~~G~~~~~l~~~~g~~--~v~~~~~~ 90 (100)
.+++..+ --.+.+++|+|+|+.|..++..+...|.+ ++++++++
T Consensus 14 ~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 14 NALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred HHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 3444433 24578999999999999999988889998 89999988
No 202
>PRK06841 short chain dehydrogenase; Provisional
Probab=97.10 E-value=0.0019 Score=41.64 Aligned_cols=39 Identities=21% Similarity=0.107 Sum_probs=33.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
++++++|.|+ |.+|..+++.+...|++ |+.++++++..+
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~~-Vi~~~r~~~~~~ 53 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGAR-VALLDRSEDVAE 53 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence 4789999998 99999999888889998 888888776543
No 203
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.09 E-value=0.002 Score=39.58 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=32.5
Q ss_pred EEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 60 VLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 60 vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
|+|+|+ |.+|..+++.+...|.+ |+++.+++++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~-V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHE-VTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSE-EEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCE-EEEEecCchhccc
Confidence 789998 99999999999999987 9999999988663
No 204
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.09 E-value=0.00099 Score=44.28 Aligned_cols=49 Identities=24% Similarity=0.385 Sum_probs=34.1
Q ss_pred HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556 49 CKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 49 ~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~ 99 (100)
+++.++++|++||-+|+| -|-+++.+++..|++ |++++.+++..+.+++
T Consensus 55 ~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~~-v~gitlS~~Q~~~a~~ 103 (273)
T PF02353_consen 55 CEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGCH-VTGITLSEEQAEYARE 103 (273)
T ss_dssp HTTTT--TT-EEEEES-T-TSHHHHHHHHHH--E-EEEEES-HHHHHHHHH
T ss_pred HHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCcE-EEEEECCHHHHHHHHH
Confidence 377899999999999987 455667788888998 9999999998887753
No 205
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.08 E-value=0.0026 Score=40.11 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=41.2
Q ss_pred HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhhhhhhc
Q psy16556 49 CKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 49 ~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~~~~~~ 99 (100)
+....+.++++++-+|+|. |.+.+++++..+. .+|+++|.+++..+.+++
T Consensus 33 l~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~ 83 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRR 83 (198)
T ss_pred HHHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 3566888999999999988 8889999887653 359999999998887653
No 206
>PRK07063 short chain dehydrogenase; Provisional
Probab=97.08 E-value=0.002 Score=41.70 Aligned_cols=40 Identities=23% Similarity=0.144 Sum_probs=34.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|.|+ |++|..+++.+...|++ |+.+++++++.+.
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~r~~~~~~~ 46 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGAA-VALADLDAALAER 46 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 4689999998 89999999998899998 8888888776543
No 207
>PRK07677 short chain dehydrogenase; Provisional
Probab=97.08 E-value=0.0019 Score=41.70 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=33.2
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
|++++|.|+ |++|..+++.+...|.+ |+++++++++.+.
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~-Vi~~~r~~~~~~~ 40 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGAN-VVITGRTKEKLEE 40 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 578999998 89999999999999997 9999888776543
No 208
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.07 E-value=0.0079 Score=40.24 Aligned_cols=48 Identities=23% Similarity=0.334 Sum_probs=40.5
Q ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556 50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~ 99 (100)
+..++++|++||=+|+|- |.+++-+|+..|.+ |+.++-+++..+.+++
T Consensus 66 ~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v~-V~GvTlS~~Q~~~~~~ 113 (283)
T COG2230 66 EKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGVT-VVGVTLSEEQLAYAEK 113 (283)
T ss_pred HhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCCE-EEEeeCCHHHHHHHHH
Confidence 789999999999999864 44567788888999 9999999998877754
No 209
>PRK06500 short chain dehydrogenase; Provisional
Probab=97.06 E-value=0.002 Score=41.24 Aligned_cols=39 Identities=26% Similarity=0.257 Sum_probs=33.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
++++++|.|+ |.+|..+++.+...|++ |+++++++++.+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~-v~~~~r~~~~~~ 44 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGAR-VAITGRDPASLE 44 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCCHHHHH
Confidence 4689999998 99999999999999998 888888766544
No 210
>PRK12939 short chain dehydrogenase; Provisional
Probab=97.06 E-value=0.0023 Score=41.01 Aligned_cols=39 Identities=21% Similarity=0.155 Sum_probs=33.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
++++++|.|+ |++|..++..+...|.+ |+++++++++.+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~r~~~~~~ 45 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGAT-VAFNDGLAAEAR 45 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEeCCHHHHH
Confidence 4789999998 99999999999889998 888888777554
No 211
>PRK07035 short chain dehydrogenase; Provisional
Probab=97.06 E-value=0.0023 Score=41.20 Aligned_cols=39 Identities=23% Similarity=0.075 Sum_probs=33.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
.+++++|.|+ |++|..+++.+...|.+ |+.+++++++.+
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~~-Vi~~~r~~~~~~ 46 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGAH-VIVSSRKLDGCQ 46 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence 3678999998 89999999999989997 999988776554
No 212
>PRK07478 short chain dehydrogenase; Provisional
Probab=97.06 E-value=0.0022 Score=41.39 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=34.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|.|+ |++|..++..+...|++ |+.+++++++.+.
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~~-v~~~~r~~~~~~~ 45 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGAK-VVVGARRQAELDQ 45 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 4678999998 89999999988889998 8888888776654
No 213
>PRK06194 hypothetical protein; Provisional
Probab=97.06 E-value=0.0022 Score=42.16 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=32.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
.++++||.|+ |++|..+++.+...|++ |+++++++++.+
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~ 44 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGMK-LVLADVQQDALD 44 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEeCChHHHH
Confidence 3678999998 99999999988889998 888888766544
No 214
>PRK06125 short chain dehydrogenase; Provisional
Probab=97.05 E-value=0.0023 Score=41.51 Aligned_cols=40 Identities=23% Similarity=0.183 Sum_probs=34.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~ 46 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGCH-LHLVARDADALEA 46 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHH
Confidence 4789999998 89999999988889997 9999888776554
No 215
>PRK08265 short chain dehydrogenase; Provisional
Probab=97.04 E-value=0.0024 Score=41.60 Aligned_cols=40 Identities=23% Similarity=0.177 Sum_probs=34.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|.|+ |++|..+++.+...|++ |+.+++++++.+.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~ 45 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGAR-VAIVDIDADNGAA 45 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 4689999998 99999999998889998 9999888775443
No 216
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.04 E-value=0.0026 Score=41.07 Aligned_cols=39 Identities=21% Similarity=0.171 Sum_probs=33.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
++++++|.|+ |.+|..+++.+...|.+ |+.+++++++.+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~~-v~~~~r~~~~~~ 45 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGAA-VAIADLNQDGAN 45 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCChHHHH
Confidence 4789999998 99999999999999998 888888876553
No 217
>PRK06182 short chain dehydrogenase; Validated
Probab=97.03 E-value=0.0025 Score=41.68 Aligned_cols=40 Identities=20% Similarity=0.037 Sum_probs=34.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
++++++|.|+ |++|..+++.+...|.+ |+++++++++.+.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~-V~~~~r~~~~l~~ 42 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYT-VYGAARRVDKMED 42 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 3678999998 99999999998889998 9999888877653
No 218
>PRK06172 short chain dehydrogenase; Provisional
Probab=97.02 E-value=0.0025 Score=41.11 Aligned_cols=39 Identities=28% Similarity=0.215 Sum_probs=33.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
.+++++|.|+ |++|..++..+...|++ |+.+++++++.+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~~-v~~~~r~~~~~~ 45 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGAK-VVVADRDAAGGE 45 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHH
Confidence 4789999998 89999998888888998 899988877644
No 219
>PRK06196 oxidoreductase; Provisional
Probab=97.02 E-value=0.0024 Score=42.80 Aligned_cols=40 Identities=23% Similarity=0.137 Sum_probs=34.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|.|+ |++|..++..+...|++ |+++++++++.+.
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~~-Vv~~~R~~~~~~~ 65 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGAH-VIVPARRPDVARE 65 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 4689999998 89999999888889998 8888888776543
No 220
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=97.01 E-value=0.0027 Score=40.38 Aligned_cols=40 Identities=25% Similarity=0.225 Sum_probs=34.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
++++++|+|+ |.+|..++......|.+ |+++++++++.+.
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~~~~~~~ 44 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSNEEAAEA 44 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCChhHHHH
Confidence 3578999998 99999999998889998 9999888776543
No 221
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.00 E-value=0.0044 Score=40.96 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=34.8
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
...+++++|+|+|++|..++..+...|.+ |+++++++++.+.
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~-v~v~~R~~~~~~~ 155 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADCN-VIIANRTVSKAEE 155 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 34578999999999999998888888986 8898888777543
No 222
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.00 E-value=0.0028 Score=40.76 Aligned_cols=40 Identities=28% Similarity=0.294 Sum_probs=33.9
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|.|+ |.+|..+++.....|.+ |+++++++++.+.
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~~-v~~~~r~~~~~~~ 43 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGAK-VVIADLNDEAAAA 43 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHH
Confidence 4679999998 99999999988888998 8888888776543
No 223
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=97.00 E-value=0.0023 Score=41.12 Aligned_cols=40 Identities=33% Similarity=0.304 Sum_probs=33.3
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
++++||.|+ |.+|..++..+...|.+ |+++++++++.+.+
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~-v~~~~r~~~~~~~~ 41 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGAN-VVVNDLGEAGAEAA 41 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence 367999998 99999999888889997 99998887765443
No 224
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=96.99 E-value=0.0042 Score=43.20 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=43.1
Q ss_pred HHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556 43 AVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 43 ~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~ 99 (100)
...+..+ +..++++|++||-+|+| .|..+..+++..|++ |++++.+++..+.+++
T Consensus 153 ~~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~~-V~giDlS~~~l~~A~~ 208 (383)
T PRK11705 153 EAKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGVS-VVGVTISAEQQKLAQE 208 (383)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCCE-EEEEeCCHHHHHHHHH
Confidence 3344444 67788999999999985 455677888888887 9999999999887764
No 225
>PRK09186 flagellin modification protein A; Provisional
Probab=96.99 E-value=0.0028 Score=40.85 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=33.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
++++++|.|+ |.+|..++..+...|++ |+.+.+++++.+
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~r~~~~~~ 42 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGI-VIAADIDKEALN 42 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecChHHHH
Confidence 5789999998 89999999999889998 888888877654
No 226
>PRK05854 short chain dehydrogenase; Provisional
Probab=96.97 E-value=0.0029 Score=42.52 Aligned_cols=40 Identities=20% Similarity=0.091 Sum_probs=33.9
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.|++++|.|+ +++|..++..+...|++ |+.+.+++++.+.
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~-Vil~~R~~~~~~~ 53 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAE-VILPVRNRAKGEA 53 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 4789999998 89999999888889998 8888888776543
No 227
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=96.97 E-value=0.0028 Score=40.98 Aligned_cols=40 Identities=25% Similarity=0.201 Sum_probs=34.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|.|+ |++|..+++.+...|.+ |+.+++++++.+.
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l~~~G~~-v~~~~r~~~~~~~ 45 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERYLAEGAR-VVIADIKPARARL 45 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEcCCHHHHHH
Confidence 3678999998 99999999999889998 8888888876544
No 228
>PRK05875 short chain dehydrogenase; Provisional
Probab=96.97 E-value=0.0031 Score=41.21 Aligned_cols=39 Identities=18% Similarity=0.104 Sum_probs=33.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
++++++|.|+ |.+|..+++.+...|++ |+.+++++++.+
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~~-V~~~~r~~~~~~ 45 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGAA-VMIVGRNPDKLA 45 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCe-EEEEeCCHHHHH
Confidence 3689999998 99999999999999997 998888766543
No 229
>PRK07109 short chain dehydrogenase; Provisional
Probab=96.96 E-value=0.003 Score=42.87 Aligned_cols=40 Identities=18% Similarity=0.094 Sum_probs=34.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~~-Vvl~~R~~~~l~~ 47 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGAK-VVLLARGEEGLEA 47 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence 4678999998 99999999999889998 8888888876653
No 230
>PRK08628 short chain dehydrogenase; Provisional
Probab=96.95 E-value=0.0024 Score=41.24 Aligned_cols=39 Identities=18% Similarity=0.033 Sum_probs=32.7
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
++++++|.|+ |++|..+++.+...|++ |+++++++++.+
T Consensus 6 ~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r~~~~~~ 45 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGRSAPDDE 45 (258)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcCChhhHH
Confidence 4679999998 89999999888889998 787877776653
No 231
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=96.95 E-value=0.0031 Score=40.69 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=33.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
.++++||.|+ |++|..+++.+...|++ |+.+++++++.+
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~~-vvl~~r~~~~~~ 47 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGAE-IIINDITAERAE 47 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCE-EEEEcCCHHHHH
Confidence 4788999998 89999999988889998 888888876654
No 232
>PRK08643 acetoin reductase; Validated
Probab=96.94 E-value=0.0031 Score=40.74 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=32.9
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
+++++|.|+ |.+|..+++.+...|++ |+.+++++++.+.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~-v~~~~r~~~~~~~ 41 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFK-VAIVDYNEETAQA 41 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 578999998 99999999999889998 8888888765543
No 233
>PRK09242 tropinone reductase; Provisional
Probab=96.94 E-value=0.0033 Score=40.64 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=34.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~-v~~~~r~~~~~~~ 48 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGAD-VLIVARDADALAQ 48 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHH
Confidence 4789999998 89999999999889998 8888888776543
No 234
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.94 E-value=0.0039 Score=40.17 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
-.|.+|+|.|.|.+|..+++++...|.+.|.+.|.+.
T Consensus 21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 3689999999999999999999999998666677666
No 235
>PRK07454 short chain dehydrogenase; Provisional
Probab=96.94 E-value=0.0037 Score=39.97 Aligned_cols=41 Identities=20% Similarity=0.100 Sum_probs=34.3
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
..+++++|.|+ |.+|..++..+...|.+ |+++++++++.+.
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~ 45 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKAGWD-LALVARSQDALEA 45 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 35678999998 99999999999889997 9999888776543
No 236
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=96.94 E-value=0.0029 Score=40.48 Aligned_cols=38 Identities=29% Similarity=0.279 Sum_probs=32.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI 94 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~ 94 (100)
.+++++|.|+ |.+|..++..+...|.+ |+++++++++.
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~~-V~~~~r~~~~~ 43 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGAE-VIVVDICGDDA 43 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHH
Confidence 4689999998 99999998888888998 99998886544
No 237
>PRK07024 short chain dehydrogenase; Provisional
Probab=96.93 E-value=0.0035 Score=40.60 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=33.1
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
+++++|.|+ |++|..++..+...|++ |+++++++++.+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~-v~~~~r~~~~~~~ 41 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGAT-LGLVARRTDALQA 41 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 468999998 99999999888888997 9999888777653
No 238
>PRK06101 short chain dehydrogenase; Provisional
Probab=96.93 E-value=0.003 Score=40.57 Aligned_cols=39 Identities=23% Similarity=0.209 Sum_probs=32.8
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
++++|.|+ |++|..++..+...|++ |+++++++++.+.+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~-V~~~~r~~~~~~~~ 41 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQ-VIACGRNQSVLDEL 41 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCE-EEEEECCHHHHHHH
Confidence 56899998 99999988888888998 99999988776543
No 239
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=96.93 E-value=0.0036 Score=40.38 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=33.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
.+++++|.|+ |.+|..++......|++ |+.+++++++.+
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~~-v~~~~r~~~~~~ 49 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGAH-VLVNGRNAATLE 49 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCe-EEEEeCCHHHHH
Confidence 5789999998 89999999888888998 999988876543
No 240
>PRK06914 short chain dehydrogenase; Provisional
Probab=96.92 E-value=0.0035 Score=41.03 Aligned_cols=38 Identities=18% Similarity=0.090 Sum_probs=32.4
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
+++++|.|+ |.+|..++..+...|++ |+++++++++.+
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~~-V~~~~r~~~~~~ 41 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGYL-VIATMRNPEKQE 41 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCE-EEEEeCCHHHHH
Confidence 578999998 99999999988888998 888888776654
No 241
>PRK07774 short chain dehydrogenase; Provisional
Probab=96.92 E-value=0.0038 Score=40.06 Aligned_cols=38 Identities=24% Similarity=0.164 Sum_probs=32.7
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI 94 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~ 94 (100)
.+++++|.|+ |.+|..+++.+...|.+ |+.+++++++.
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~-vi~~~r~~~~~ 43 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGAS-VVVADINAEGA 43 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHH
Confidence 4688999998 99999999988888998 89898877654
No 242
>PRK06181 short chain dehydrogenase; Provisional
Probab=96.92 E-value=0.0033 Score=40.71 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=32.1
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
+++++|.|+ |.+|..+++.+...|.+ |+++++++++.+
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~-Vi~~~r~~~~~~ 39 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQ-LVLAARNETRLA 39 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence 367999998 99999999988889987 999988876544
No 243
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.91 E-value=0.0029 Score=44.04 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=35.5
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
.+|+|+|+|.+|+.+++.+...+-.+|++.+++.++.+.+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~ 42 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIA 42 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence 57999999999999999988888455999999999887764
No 244
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=96.91 E-value=0.0034 Score=42.12 Aligned_cols=40 Identities=15% Similarity=0.080 Sum_probs=33.7
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~-V~~~~r~~~~~~~ 45 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGWH-VIMACRNLKKAEA 45 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence 4788999998 99999999888888988 8888888776543
No 245
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.91 E-value=0.004 Score=33.53 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=29.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
+++|+|+|.+|.-++..++..|.+ |..+++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~-vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKE-VTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE-EEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcE-EEEEeccch
Confidence 589999999999999999999988 888877654
No 246
>PRK07904 short chain dehydrogenase; Provisional
Probab=96.91 E-value=0.0038 Score=40.59 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcC-CcEEEEEecChhh
Q psy16556 54 VGLGTSVLVLSA-GPIGLVTILAAKAYG-ARVICVCKYVGIR 93 (100)
Q Consensus 54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g-~~~v~~~~~~~~~ 93 (100)
+..+++++|.|+ |++|..+++-+...| ++ |+++++++++
T Consensus 5 ~~~~~~vlItGas~giG~~la~~l~~~gg~~-V~~~~r~~~~ 45 (253)
T PRK07904 5 VGNPQTILLLGGTSEIGLAICERYLKNAPAR-VVLAALPDDP 45 (253)
T ss_pred cCCCcEEEEEcCCcHHHHHHHHHHHhcCCCe-EEEEeCCcch
Confidence 467889999998 999999888766664 77 8888888765
No 247
>PRK05876 short chain dehydrogenase; Provisional
Probab=96.91 E-value=0.0035 Score=41.30 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=33.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
.+++++|.|+ |++|..+++.+...|++ |+++++++++.+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~~-Vv~~~r~~~~l~ 44 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGAR-VVLGDVDKPGLR 44 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence 4788999998 89999999998889998 888888776654
No 248
>PRK05693 short chain dehydrogenase; Provisional
Probab=96.90 E-value=0.0033 Score=41.13 Aligned_cols=38 Identities=21% Similarity=0.120 Sum_probs=32.4
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~ 40 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYE-VWATARKAEDVEA 40 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 47899998 99999999999889998 8988888776554
No 249
>PRK06138 short chain dehydrogenase; Provisional
Probab=96.88 E-value=0.0036 Score=40.17 Aligned_cols=39 Identities=26% Similarity=0.179 Sum_probs=32.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
++++++|.|+ |.+|..+++.+...|++ |+.+.+++++.+
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~~-v~~~~r~~~~~~ 43 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGAR-VVVADRDAEAAE 43 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCe-EEEecCCHHHHH
Confidence 4679999998 99999998888888988 888888776544
No 250
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.88 E-value=0.0026 Score=46.87 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
..+++|+|+|+|+.|+.++..++..|.+ |++++..+
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~~ 360 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRHP 360 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecCC
Confidence 3589999999999999999999999998 88887654
No 251
>PRK08267 short chain dehydrogenase; Provisional
Probab=96.87 E-value=0.0037 Score=40.50 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=33.0
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
++++|.|+ |.+|..+++.+...|++ |+++++++++.+.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~~ 41 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWR-VGAYDINEAGLAAL 41 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHH
Confidence 57999998 99999999988889998 88888888776543
No 252
>PRK06197 short chain dehydrogenase; Provisional
Probab=96.87 E-value=0.0033 Score=41.89 Aligned_cols=39 Identities=23% Similarity=0.109 Sum_probs=33.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
.+++++|.|+ |++|..+++.+...|++ |+.+.+++++.+
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~~-vi~~~r~~~~~~ 54 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGAH-VVLAVRNLDKGK 54 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence 5789999998 99999999888888998 888888776644
No 253
>PRK05717 oxidoreductase; Validated
Probab=96.87 E-value=0.0039 Score=40.29 Aligned_cols=39 Identities=26% Similarity=0.101 Sum_probs=32.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
.|++++|.|+ |.+|..++..+...|++ |+.+++++++.+
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~-v~~~~~~~~~~~ 48 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEGWQ-VVLADLDRERGS 48 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCE-EEEEcCCHHHHH
Confidence 4789999998 99999999988888998 888877765443
No 254
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=96.86 E-value=0.0038 Score=35.30 Aligned_cols=42 Identities=26% Similarity=0.267 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHH-cCCcEEEEEecChhhhhhhhc
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKA-YGARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~-~g~~~v~~~~~~~~~~~~~~~ 99 (100)
|+++||-+|+|. |..++.+++. .+.+ |+++|.+++-.+.+++
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~ 43 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALARLFPGAR-VVGVDISPEMLEIARE 43 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHHHHTTSE-EEEEESSHHHHHHHHH
T ss_pred CCCEEEEEcCcC-CHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHH
Confidence 688999999875 6667777774 6677 9999999998888764
No 255
>PRK08177 short chain dehydrogenase; Provisional
Probab=96.86 E-value=0.0035 Score=39.82 Aligned_cols=39 Identities=13% Similarity=0.053 Sum_probs=32.5
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
++++|.|+ |++|..+++.+...|.+ |+++++++++.+.+
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~~ 41 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQ-VTATVRGPQQDTAL 41 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCE-EEEEeCCCcchHHH
Confidence 57899998 99999998888888997 99998887765433
No 256
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.86 E-value=0.0037 Score=41.66 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=34.2
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
++|.|+|+|.+|...++.+...|.+ |+..+.++++.+.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~-V~l~d~~~~~l~~~ 42 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYD-VTIVDVSEEILKNA 42 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCe-EEEEeCCHHHHHHH
Confidence 5799999999999999988888998 99999999887643
No 257
>PRK08264 short chain dehydrogenase; Validated
Probab=96.85 E-value=0.0041 Score=39.66 Aligned_cols=40 Identities=25% Similarity=0.154 Sum_probs=33.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
.+++++|.|+ |.+|..+++.+...|.++|+++++++++.+
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~ 45 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVT 45 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhh
Confidence 4678999998 999999999999999934999988876654
No 258
>PRK08226 short chain dehydrogenase; Provisional
Probab=96.85 E-value=0.0034 Score=40.71 Aligned_cols=38 Identities=18% Similarity=0.083 Sum_probs=32.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI 94 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~ 94 (100)
.+++++|.|+ |++|..+++.+...|++ |+.++++++..
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~r~~~~~ 43 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGAN-LILLDISPEIE 43 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecCCHHHH
Confidence 4689999998 99999999988889998 88888776533
No 259
>PRK06847 hypothetical protein; Provisional
Probab=96.84 E-value=0.0036 Score=42.69 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=30.6
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
..+|+|+|+|+.|++++..++..|.+ |++++++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~-v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIA-VDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCC-EEEEecCCC
Confidence 46799999999999999999999999 888887653
No 260
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=96.83 E-value=0.0035 Score=40.54 Aligned_cols=36 Identities=33% Similarity=0.369 Sum_probs=31.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
.+++++|.|+ |++|..+++.+...|++ |+++++++.
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~~-v~~~~r~~~ 43 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGAR-VVLVDRSEL 43 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCchH
Confidence 4688999998 99999999988889998 888887753
No 261
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=96.83 E-value=0.0045 Score=40.52 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=33.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
.+++++|.|+ |++|..++..+...|++ |+++++++++.+
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~ 48 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGAK-VAILDRNQEKAE 48 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence 4788999998 89999999998889998 888888776543
No 262
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=96.82 E-value=0.005 Score=37.11 Aligned_cols=33 Identities=30% Similarity=0.332 Sum_probs=28.2
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
++++|+|+ +++|..+++.....|.++|+.+.++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~ 34 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS 34 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec
Confidence 47899998 8999998888888888778888887
No 263
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.80 E-value=0.0039 Score=42.85 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
+..+|+|+|+|+.|++++..++..|.+ |.+++++++
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~-v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIK-VKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCc-EEEEeeCcc
Confidence 346799999999999999999999999 999987754
No 264
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=96.80 E-value=0.0048 Score=39.52 Aligned_cols=39 Identities=21% Similarity=0.149 Sum_probs=33.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
+++++||.|+ |.+|..++..+...|.+ |+.+++++++.+
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~-v~~~~r~~~~~~ 41 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAK-VAVFDLNREAAE 41 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecCCHHHHH
Confidence 4688999998 99999999998889998 888888776644
No 265
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=96.79 E-value=0.005 Score=39.80 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=32.1
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
+++++|.|+ |.+|..++..+...|++ |+.+++++++.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~-vi~~~r~~~~~~ 40 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYR-VAVADINSEKAA 40 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHH
Confidence 578999998 89999999888888998 888888776543
No 266
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.79 E-value=0.0031 Score=42.08 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=28.6
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR 93 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~ 93 (100)
.|+|+|+|+.|++++..++..|.+ |++++++++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~~~ 36 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGID-VTIIERRPDP 36 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCE-EEEEESSSSC
T ss_pred eEEEECCCHHHHHHHHHHHhcccc-cccchhcccc
Confidence 589999999999999999999999 9999887653
No 267
>PLN00203 glutamyl-tRNA reductase
Probab=96.78 E-value=0.0041 Score=44.87 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=36.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
.+.+|+|+|+|.+|.+++..+...|+++|+++.+++++.+.+
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~L 306 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAAL 306 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHH
Confidence 378999999999999999999999987799999998886554
No 268
>PRK07102 short chain dehydrogenase; Provisional
Probab=96.78 E-value=0.005 Score=39.50 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=32.1
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
++++|.|+ |++|..+++.+...|.+ |+++++++++.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~-Vi~~~r~~~~~~ 39 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGAR-LYLAARDVERLE 39 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCE-EEEEeCCHHHHH
Confidence 57999998 99999999988888998 999988887654
No 269
>KOG1014|consensus
Probab=96.77 E-value=0.0036 Score=42.22 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=35.5
Q ss_pred CCCCEEEEEcC-CHHHHH-HHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 55 GLGTSVLVLSA-GPIGLV-TILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 55 ~~g~~vli~G~-G~~G~~-~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
+.|++.+|.|+ +++|.. +-++|+ .|.+ |+.+.|+++|++..+
T Consensus 47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~n-vvLIsRt~~KL~~v~ 90 (312)
T KOG1014|consen 47 KLGSWAVVTGATDGIGKAYARELAK-RGFN-VVLISRTQEKLEAVA 90 (312)
T ss_pred hcCCEEEEECCCCcchHHHHHHHHH-cCCE-EEEEeCCHHHHHHHH
Confidence 34799999999 799977 566776 9999 999999999998764
No 270
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.77 E-value=0.005 Score=40.96 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=34.8
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
++|.|+|+|.+|...++.+...|.+ |++.++++++.+.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~-V~~~d~~~~~~~~~~ 41 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQ-TTLVDIKQEQLESAQ 41 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCc-EEEEeCCHHHHHHHH
Confidence 4799999999999998888888998 999999998877653
No 271
>PRK08251 short chain dehydrogenase; Provisional
Probab=96.77 E-value=0.0054 Score=39.36 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=32.3
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
+++++|.|+ |++|..+++.+...|.+ |+++++++++.+.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~-v~~~~r~~~~~~~ 41 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRD-LALCARRTDRLEE 41 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHHH
Confidence 568999998 99999988888888987 8888888776543
No 272
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.76 E-value=0.0059 Score=39.01 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=32.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
.+++++|.|+ |.+|..++..+...|.+ |+++++++++.+
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~~-Vi~~~r~~~~~~ 45 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIALAKEGVN-VGLLARTEENLK 45 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence 3678999998 89999999888889997 988988876544
No 273
>PRK06753 hypothetical protein; Provisional
Probab=96.75 E-value=0.0037 Score=42.63 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=29.5
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
+|+|+|+|+.|++++..++..|.+ |.+++++++
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~-v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHE-VKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc-EEEEecCCc
Confidence 699999999999999999999999 888987764
No 274
>PRK07074 short chain dehydrogenase; Provisional
Probab=96.75 E-value=0.0059 Score=39.41 Aligned_cols=38 Identities=24% Similarity=0.194 Sum_probs=32.3
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
+++++|.|+ |.+|..++..+...|.+ |+.+++++++.+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~-v~~~~r~~~~~~ 40 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDR-VLALDIDAAALA 40 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence 568999998 89999998888888988 888888877654
No 275
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=96.74 E-value=0.0055 Score=39.50 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=32.0
Q ss_pred EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
+++|.|+ |++|..++..+...|++ |+++++++++.+.
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~ 39 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHK-VIATGRRQERLQE 39 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence 6899998 99999999999889998 8999888876654
No 276
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=96.74 E-value=0.0098 Score=34.00 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=38.6
Q ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
....+.++++++-+|+|. |..+..+++..+..+++.+|.++...+.++
T Consensus 13 ~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~ 60 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIE 60 (124)
T ss_pred HHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHH
Confidence 445677788999999977 888888888876555999999988877764
No 277
>PRK08862 short chain dehydrogenase; Provisional
Probab=96.74 E-value=0.0055 Score=39.34 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=34.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
+|++++|.|+ +++|..++.-+...|++ |+.+++++++.+.+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~-V~~~~r~~~~l~~~ 45 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGAT-LILCDQDQSALKDT 45 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHH
Confidence 4789999998 79999998888889998 88888888776543
No 278
>PLN02253 xanthoxin dehydrogenase
Probab=96.73 E-value=0.006 Score=39.99 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=31.9
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI 94 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~ 94 (100)
.+++++|.|+ |++|..+++.+...|++ |+++++++++.
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~~-v~~~~~~~~~~ 55 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGAK-VCIVDLQDDLG 55 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeCCHHHH
Confidence 4789999998 99999998888888998 88888776544
No 279
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.71 E-value=0.0035 Score=43.29 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=29.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
..|+|+|+|++|+++...++..|.+ |.++++.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~-V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLD-VTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCc-EEEEccC
Confidence 4699999999999999999999999 9999887
No 280
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=96.71 E-value=0.0062 Score=39.42 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=30.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
.+++++|.|+ |++|..+++.....|++ |+++.++
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~ 48 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTHG 48 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 5789999998 89999999999899998 8877766
No 281
>PRK08589 short chain dehydrogenase; Validated
Probab=96.71 E-value=0.0052 Score=40.25 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=30.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
++++++|.|+ +++|..+++.....|++ |++++++
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~~-vi~~~r~ 39 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGAY-VLAVDIA 39 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCc
Confidence 4789999998 89999999888888998 8888877
No 282
>PRK12742 oxidoreductase; Provisional
Probab=96.70 E-value=0.0058 Score=38.89 Aligned_cols=38 Identities=24% Similarity=0.176 Sum_probs=30.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec-Chhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKY-VGIRI 94 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~-~~~~~ 94 (100)
.+++++|.|+ |++|..+++.+...|++ |+.+.+ ++++.
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~G~~-v~~~~~~~~~~~ 44 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTDGAN-VRFTYAGSKDAA 44 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEecCCCHHHH
Confidence 4789999998 99999999999999998 766543 44443
No 283
>PRK07832 short chain dehydrogenase; Provisional
Probab=96.70 E-value=0.0059 Score=39.93 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=31.1
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
++++|.|+ |++|..+++.+...|++ |+++++++++.+
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~-vv~~~r~~~~~~ 38 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAE-LFLTDRDADGLA 38 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence 36899998 99999999988889998 888888776544
No 284
>PRK06198 short chain dehydrogenase; Provisional
Probab=96.69 E-value=0.0069 Score=39.12 Aligned_cols=40 Identities=20% Similarity=0.154 Sum_probs=33.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
.+++++|.|+ |++|..+++.+...|++.|+++++++++.+
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~ 45 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGE 45 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHH
Confidence 5788999998 899999999999999986888887766543
No 285
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.67 E-value=0.005 Score=43.72 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
.+++|+|+|+|+.|+.++..++..|.+ |++++..+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecCC
Confidence 578999999999999999999999998 88887654
No 286
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=96.67 E-value=0.0071 Score=44.90 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=48.1
Q ss_pred ccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 13 LSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 13 ~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
..+|..+++...+.+ +-++.|++=+- .+ ....-.+++++|.|+ |++|..+++.+...|++ |++++++
T Consensus 379 ~~~~~~~~~~~~f~~-eyw~~e~~kl~~~~---------~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~-Vvi~~r~ 447 (676)
T TIGR02632 379 VSEYVSLPEQEAFDI-EYWPLEEAKLRRMP---------KEKTLARRVAFVTGGAGGIGRETARRLAAEGAH-VVLADLN 447 (676)
T ss_pred ccceecCchhhccch-hhhhhhHHhhccCC---------CCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCE-EEEEeCC
Confidence 345666666666655 44444443211 00 011124789999998 99999999988889998 9989888
Q ss_pred hhhhhh
Q psy16556 91 GIRIFP 96 (100)
Q Consensus 91 ~~~~~~ 96 (100)
+++.+.
T Consensus 448 ~~~~~~ 453 (676)
T TIGR02632 448 LEAAEA 453 (676)
T ss_pred HHHHHH
Confidence 766543
No 287
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.64 E-value=0.0059 Score=44.13 Aligned_cols=41 Identities=27% Similarity=0.309 Sum_probs=35.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
.+++++|+|+|++|.+++..+...|++ |+++.++.++.+.+
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~~-V~i~nR~~e~a~~l 418 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGAR-VVIANRTYERAKEL 418 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHH
Confidence 468999999999999999999999995 99998887766544
No 288
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=96.64 E-value=0.008 Score=38.85 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=32.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
.+++++|.|+ |++|..++..+...|++ ++.+++++++.+
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~r~~~~~~ 49 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDINADAAN 49 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHH
Confidence 4789999998 89999999988889998 888877766554
No 289
>KOG2304|consensus
Probab=96.64 E-value=0.0041 Score=40.60 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=39.6
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556 53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~ 99 (100)
+..+-+.|.|+|+|.+|.-.+|++...|.+ |...+.+++.+..+++
T Consensus 7 ~~~~~~~V~ivGaG~MGSGIAQv~a~sg~~-V~l~d~~~~aL~~A~~ 52 (298)
T KOG2304|consen 7 NMAEIKNVAIVGAGQMGSGIAQVAATSGLN-VWLVDANEDALSRATK 52 (298)
T ss_pred ccccccceEEEcccccchhHHHHHHhcCCc-eEEecCCHHHHHHHHH
Confidence 344557799999999999999999999999 9999999998877653
No 290
>PRK06184 hypothetical protein; Provisional
Probab=96.63 E-value=0.0043 Score=44.25 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=30.1
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
..|+|+|+|+.|++++..+...|.+ |.++++.++
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~~~ 37 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVS-FRLIEKAPE 37 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCc-EEEEeCCCC
Confidence 4599999999999999999999999 999987654
No 291
>PRK07856 short chain dehydrogenase; Provisional
Probab=96.63 E-value=0.0063 Score=39.28 Aligned_cols=37 Identities=32% Similarity=0.297 Sum_probs=31.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR 93 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~ 93 (100)
.+++++|.|+ |++|..+++.+...|.+ |+.+++++++
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~~-v~~~~r~~~~ 42 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGAT-VVVCGRRAPE 42 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCChhh
Confidence 4789999998 89999999998889998 8888887653
No 292
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.62 E-value=0.0072 Score=40.24 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=34.1
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
++|.|+|+|.+|...++.+...|.+ |+..+.++++.+.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~-V~l~d~~~~~l~~~~ 43 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFD-VTIYDISDEALEKAK 43 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCe-EEEEeCCHHHHHHHH
Confidence 5799999999999998888888988 999999988766543
No 293
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.61 E-value=0.0089 Score=34.18 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=32.3
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556 60 VLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 60 vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~ 99 (100)
++|.|.|.+|..+++.++..+.+ |++++.++++.+.+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~-vvvid~d~~~~~~~~~ 39 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGID-VVVIDRDPERVEELRE 39 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSE-EEEEESSHHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCE-EEEEECCcHHHHHHHh
Confidence 67899999999999999996656 9999999988877653
No 294
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.61 E-value=0.0061 Score=44.19 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=37.6
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~ 99 (100)
++++|.|.|.+|+.+++.++..|.+ ++++|.++++.+.+++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~-vvvId~d~~~~~~~~~ 458 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIP-LVVIETSRTRVDELRE 458 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHH
Confidence 6899999999999999999999998 9999999999887764
No 295
>PRK06484 short chain dehydrogenase; Validated
Probab=96.61 E-value=0.0077 Score=42.94 Aligned_cols=41 Identities=15% Similarity=0.004 Sum_probs=35.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
.++.++|.|+ +++|..+++.+...|++ |+.+++++++.+.+
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~ 309 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDR-LLIIDRDAEGAKKL 309 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence 4788999998 89999999998899998 99998888776544
No 296
>PRK06482 short chain dehydrogenase; Provisional
Probab=96.61 E-value=0.008 Score=39.30 Aligned_cols=39 Identities=13% Similarity=-0.002 Sum_probs=32.7
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
+++||.|+ |.+|..+++.+...|.+ |+++++++++.+.+
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~-v~~~~r~~~~~~~~ 42 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDR-VAATVRRPDALDDL 42 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence 57999998 99999999888888998 88888887765543
No 297
>PRK06179 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.0074 Score=39.29 Aligned_cols=39 Identities=23% Similarity=0.086 Sum_probs=32.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
.+++++|.|+ |++|..+++.+...|++ |+++++++++.+
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~-V~~~~r~~~~~~ 42 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYR-VFGTSRNPARAA 42 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCChhhcc
Confidence 4578999998 99999999888888998 888888766543
No 298
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.60 E-value=0.0051 Score=38.64 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=32.3
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~ 99 (100)
+|.|+|.|-+|+-++......|.+ |+.+|.++++.+.+++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~-V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQ-VIGVDIDEEKVEALNN 41 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSE-EEEE-S-HHHHHHHHT
T ss_pred EEEEECCCcchHHHHHHHHhCCCE-EEEEeCChHHHHHHhh
Confidence 688999999999999999999998 9999999999887753
No 299
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.60 E-value=0.0031 Score=35.82 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
.|++|||+|+|.+|..-++.+...|++ |+++.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~-v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAK-VTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBE-EEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECCc
Confidence 578999999999999999999999998 8888766
No 300
>PRK07045 putative monooxygenase; Reviewed
Probab=96.59 E-value=0.0053 Score=42.21 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=30.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
-+|+|+|+|+.|+.+...++..|.+ |.++++.++
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~-v~v~E~~~~ 39 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHS-VTVVERAAR 39 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCc-EEEEeCCCc
Confidence 4699999999999999999999998 999987664
No 301
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.59 E-value=0.0066 Score=36.36 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=29.4
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 60 VLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 60 vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
|+|+|+|.+|......++..|.+ |..+.+++ +.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~-~~~~~ 36 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSP-RLEAI 36 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCE-EEEEESHH-HHHHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCc-eEEEEccc-cHHhh
Confidence 68999999999988888788988 88887777 55443
No 302
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.59 E-value=0.0062 Score=44.90 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
.+++|+|+|+|+.|+.++..++..|.+ |++++..+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~-Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQ-VDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCc-EEEEeCCC
Confidence 489999999999999999999999998 88887665
No 303
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.58 E-value=0.0087 Score=36.63 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=28.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCK 88 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~ 88 (100)
.|++|+|+|+|.+|..-++.+...|++ |.+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~-V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAF-VTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEc
Confidence 579999999999999999888889998 77774
No 304
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=96.58 E-value=0.0091 Score=38.86 Aligned_cols=39 Identities=23% Similarity=0.119 Sum_probs=32.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
.+++++|.|+ +++|..++..+...|++ |+.+++++++.+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~~~~~~~~ 48 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDINQELVD 48 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHH
Confidence 5688999998 89999988888888998 888888876654
No 305
>PRK07236 hypothetical protein; Provisional
Probab=96.57 E-value=0.0067 Score=41.77 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=30.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
..+|+|+|+|+.|+.+...+...|.+ |+++++.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWD-VDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCC-EEEEecCCC
Confidence 36799999999999999999999999 999987653
No 306
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.57 E-value=0.0091 Score=38.60 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=34.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++|+|+|.+|...++.+...|.+ |++++.++++.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~-Vv~Id~d~~~~~~ 38 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHN-VVLIDRDEERVEE 38 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCc-eEEEEcCHHHHHH
Confidence 3689999999999999999999999 9999999998765
No 307
>PRK07190 hypothetical protein; Provisional
Probab=96.56 E-value=0.0056 Score=43.76 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=30.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR 93 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~ 93 (100)
-.|+|+|+|++|+++...+...|.+ |.++++.++.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~-V~llEr~~~~ 40 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLN-TVIVDKSDGP 40 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCC-EEEEeCCCcc
Confidence 4699999999999988888889999 8999877643
No 308
>PRK08263 short chain dehydrogenase; Provisional
Probab=96.56 E-value=0.0089 Score=39.15 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=32.7
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
+++++|.|+ |.+|..+++.+...|.+ |+.+++++++.+.
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~~-V~~~~r~~~~~~~ 42 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGDR-VVATARDTATLAD 42 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence 568999998 99999999888888988 8888888776543
No 309
>PRK08244 hypothetical protein; Provisional
Probab=96.56 E-value=0.005 Score=43.78 Aligned_cols=33 Identities=24% Similarity=0.541 Sum_probs=29.4
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
.|+|+|+|++|++++..+...|.+ |.++++.++
T Consensus 4 dVlIVGaGpaGl~lA~~L~~~G~~-v~viEr~~~ 36 (493)
T PRK08244 4 EVIIIGGGPVGLMLASELALAGVK-TCVIERLKE 36 (493)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCc-EEEEecCCC
Confidence 599999999999998888889999 999987655
No 310
>PRK14967 putative methyltransferase; Provisional
Probab=96.56 E-value=0.016 Score=37.15 Aligned_cols=48 Identities=27% Similarity=0.380 Sum_probs=37.6
Q ss_pred HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 49 CKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 49 ~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
+....++++++||-.|+|. |...+.+++. +..+|+++|.+++..+.++
T Consensus 29 l~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~ 76 (223)
T PRK14967 29 LAAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSAR 76 (223)
T ss_pred HHhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHH
Confidence 3445678899999999987 8888888775 6645999999998777654
No 311
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.55 E-value=0.0082 Score=38.31 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
.|++|+|+|+|.+|..-++.+...|++ |+++++..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~-VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQ-LRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCE-EEEEcCCC
Confidence 478999999999999999999999998 88886653
No 312
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=96.55 E-value=0.0079 Score=39.02 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=31.6
Q ss_pred EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
+++|.|+ +++|..+++.....|++ |+.+++++++.+.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~ 39 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGAR-VVISSRNEENLEK 39 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCE-EEEEeCCHHHHHH
Confidence 6899998 89999999988889998 8999888776543
No 313
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.55 E-value=0.012 Score=32.59 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=31.6
Q ss_pred EEEEEcCCHHHHHHHHHHHHcC---CcEEE-EEecChhhhhhhh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYG---ARVIC-VCKYVGIRIFPYK 98 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g---~~~v~-~~~~~~~~~~~~~ 98 (100)
++.++|+|.+|.+.+.-....| .+ |+ +.++++++.+.+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~-v~~~~~r~~~~~~~~~ 43 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHE-VIIVSSRSPEKAAELA 43 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGE-EEEEEESSHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCcee-EEeeccCcHHHHHHHH
Confidence 5778899999999998888888 55 77 4489999887653
No 314
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=96.53 E-value=0.0086 Score=40.75 Aligned_cols=47 Identities=11% Similarity=-0.038 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 44 VGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 44 ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
|+|.-++..-.-++++|+|.|+ |-+|..++..+...|.+ |+++++..
T Consensus 2 ~~~~~~~~~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~-V~~~d~~~ 49 (348)
T PRK15181 2 TAYEELRTKLVLAPKRWLITGVAGFIGSGLLEELLFLNQT-VIGLDNFS 49 (348)
T ss_pred chhhhhhhcccccCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEeCCC
Confidence 4555554333445689999998 99999999999999987 88887643
No 315
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.52 E-value=0.0075 Score=36.72 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=33.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
+|.|+|+|..|.+++..+...|.+ |....++++..+.++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~-V~l~~~~~~~~~~i~ 39 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHE-VTLWGRDEEQIEEIN 39 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEE-EEEETSCHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCE-EEEEeccHHHHHHHH
Confidence 588999999999999999999977 999999887766543
No 316
>PLN02928 oxidoreductase family protein
Probab=96.51 E-value=0.0073 Score=41.49 Aligned_cols=34 Identities=21% Similarity=0.507 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
.|+++.|+|.|.+|..+++.++.+|.+ |++.+++
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~~-V~~~dr~ 191 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGVK-LLATRRS 191 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECCC
Confidence 479999999999999999999999998 9998775
No 317
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.51 E-value=0.028 Score=34.84 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=33.1
Q ss_pred CCCCCEEEEEcCCH-HHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556 54 VGLGTSVLVLSAGP-IGLVTILAAKAYGARVICVCKYVGIRI 94 (100)
Q Consensus 54 ~~~g~~vli~G~G~-~G~~~~~l~~~~g~~~v~~~~~~~~~~ 94 (100)
--.|++++|+|+|. +|..++..++..|++ |+++.++.+.+
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~-V~v~~r~~~~l 81 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNAT-VTVCHSKTKNL 81 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCE-EEEEECCchhH
Confidence 45799999999986 699999999999997 88887775443
No 318
>KOG1502|consensus
Probab=96.51 E-value=0.0088 Score=40.78 Aligned_cols=40 Identities=20% Similarity=-0.011 Sum_probs=35.7
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+..|+|.|+ |-+|..++..+...|.+ |.++.|++++.+.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~-V~gtVR~~~~~k~ 45 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYT-VRGTVRDPEDEKK 45 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCE-EEEEEcCcchhhh
Confidence 5789999999 99999999999999999 9999998887443
No 319
>KOG1207|consensus
Probab=96.51 E-value=0.007 Score=38.14 Aligned_cols=41 Identities=27% Similarity=0.351 Sum_probs=36.3
Q ss_pred CCCEEEEEcCC-HHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 56 LGTSVLVLSAG-PIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 56 ~g~~vli~G~G-~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
.|..|++.|+| ++|...++-+...|++ |+++.++++.+..+
T Consensus 6 aG~~vlvTgagaGIG~~~v~~La~aGA~-ViAvaR~~a~L~sL 47 (245)
T KOG1207|consen 6 AGVIVLVTGAGAGIGKEIVLSLAKAGAQ-VIAVARNEANLLSL 47 (245)
T ss_pred cceEEEeecccccccHHHHHHHHhcCCE-EEEEecCHHHHHHH
Confidence 57889999995 8999999999999999 99999999887654
No 320
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.51 E-value=0.006 Score=42.21 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=30.1
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
.+|+|+|+|+.|++++..++..|.+ |.++++.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~-V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWA-VTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc-EEEEecCCc
Confidence 6799999999999999999899999 999987654
No 321
>PRK06523 short chain dehydrogenase; Provisional
Probab=96.49 E-value=0.0077 Score=38.96 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=31.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
+|++++|.|+ |++|..+++.+...|++ |++++++++
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~r~~~ 44 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAGAR-VVTTARSRP 44 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCCCE-EEEEeCChh
Confidence 4789999998 89999999988889998 888877654
No 322
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=96.49 E-value=0.0054 Score=43.03 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=25.6
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR 93 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~ 93 (100)
.|+|+|+|+.|++++..+...|.+ |++++++++-
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~-V~vlE~~~~~ 35 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGAR-VLVLERNKRV 35 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT---EEEE-SSSSS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCC-EEEEeCCccc
Confidence 489999999999999999999999 9999988654
No 323
>PRK06398 aldose dehydrogenase; Validated
Probab=96.49 E-value=0.0086 Score=38.94 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=31.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR 93 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~ 93 (100)
.|++++|.|+ |++|..++..+...|++ |+.+++++++
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l~~~G~~-Vi~~~r~~~~ 42 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRLKEEGSN-VINFDIKEPS 42 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCccc
Confidence 4689999998 89999999999999998 8888776543
No 324
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.49 E-value=0.0095 Score=39.56 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=32.0
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
+|.|+|+|.+|......+...|.+ |+.+++++++.+.++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~-V~~~~r~~~~~~~~~ 40 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHD-VTLVARRGAHLDALN 40 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCe-EEEEECChHHHHHHH
Confidence 589999999999888888888887 888888777665543
No 325
>PRK12831 putative oxidoreductase; Provisional
Probab=96.48 E-value=0.0088 Score=42.49 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
..+++|+|+|+|+.|+.++..++..|.+ |++++..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~-V~v~e~~ 172 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYD-VTIFEAL 172 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCe-EEEEecC
Confidence 4689999999999999999999999998 8888753
No 326
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.47 E-value=0.01 Score=38.46 Aligned_cols=38 Identities=18% Similarity=0.032 Sum_probs=32.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI 94 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~ 94 (100)
.+++++|+|+ |.+|..++..+...|.+ |+++.+++++.
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~~~R~~~~~ 54 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFA-VKAGVRDVDKA 54 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCE-EEEEecCHHHH
Confidence 3689999998 99999999888888988 88887877664
No 327
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.47 E-value=0.021 Score=40.63 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=30.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEE-EEecC
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVIC-VCKYV 90 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~-~~~~~ 90 (100)
-.|.+|+|.|.|.+|..+++.+..+|++ |+ +.|.+
T Consensus 235 l~Gk~VaVqG~GnVg~~aa~~L~e~Gak-VVavSD~~ 270 (454)
T PTZ00079 235 LEGKTVVVSGSGNVAQYAVEKLLQLGAK-VLTMSDSD 270 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEEcCC
Confidence 4789999999999999999999999999 66 55554
No 328
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.47 E-value=0.012 Score=34.79 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=30.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
..+|+|+|+|++|..++..+...|..++..+|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 46899999999999999999999998898887643
No 329
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.46 E-value=0.01 Score=39.98 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=31.5
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
.+|+|+|+|++|....-.+...|.+ |..+++++++.+.+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~-V~lv~r~~~~~~~i 41 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLP-VRLILRDRQRLAAY 41 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCC-eEEEEechHHHHHH
Confidence 4699999999998877777778988 88888887666544
No 330
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=96.46 E-value=0.0096 Score=39.87 Aligned_cols=37 Identities=19% Similarity=-0.037 Sum_probs=31.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR 93 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~ 93 (100)
.|++|+|.|+ |.+|..++..+...|.+ |+++.++.++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~ 41 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYT-VKATVRDLTD 41 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCCcc
Confidence 4789999998 99999999988888998 8877676554
No 331
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.46 E-value=0.0094 Score=37.87 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
.+.+|+|+|+|++|..+++.+...|..++..+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 35789999999999999999999999879998865
No 332
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.46 E-value=0.0096 Score=42.30 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
+.+++|+|+|+|+.|+.++..++..|.+ |++++..+
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~-V~vie~~~ 176 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHK-VTVFERAD 176 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence 3578999999999999999999999998 88887653
No 333
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.45 E-value=0.0082 Score=42.71 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
..++|+|+|+|+.|+.++..++..|.+ +++.++++
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~-v~vfE~~~ 43 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHT-VVVFEREK 43 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCe-EEEEecCC
Confidence 457899999999999999999999998 88888654
No 334
>PRK05868 hypothetical protein; Validated
Probab=96.45 E-value=0.0077 Score=41.45 Aligned_cols=34 Identities=15% Similarity=0.050 Sum_probs=29.8
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
.+|+|+|+|+.|+++...+...|.+ |.++++.++
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~-v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYS-VTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCC
Confidence 3699999999999998888889999 999987655
No 335
>PRK08328 hypothetical protein; Provisional
Probab=96.45 E-value=0.01 Score=38.46 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=31.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
+.+|+|+|+|++|..++..+...|..+++.+|.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 57899999999999999999999999898887543
No 336
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=96.45 E-value=0.01 Score=41.63 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=33.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
.+++++|.|+ |++|..++......|.+ |+++++++++.+
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~~-Vi~l~r~~~~l~ 216 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGAK-VVALTSNSDKIT 216 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence 4789999998 99999999888888998 888888776543
No 337
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.44 E-value=0.0096 Score=44.04 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
..+++|+|+|+|+.|+.++..+...|.+ |++++.++.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~-Vtv~e~~~~ 227 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHD-VTIFDANEQ 227 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCc-EEEEecCCC
Confidence 4578999999999999999999999998 888876543
No 338
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.44 E-value=0.0098 Score=38.85 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=31.5
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
+.+|+|+|+|++|..+++.+...|..+++.+|.+.-
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 478999999999999999999999998988876543
No 339
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.44 E-value=0.011 Score=39.34 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=34.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
++|.|+|+|.+|..++..+...|.+ |++.++++++.+.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~ 43 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYD-VLLNDVSADRLEAG 43 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHH
Confidence 5799999999999988888888988 99999998877653
No 340
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.44 E-value=0.011 Score=40.28 Aligned_cols=40 Identities=15% Similarity=0.020 Sum_probs=34.5
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
-++|.|+|+|.+|...++.+...|.+ |.+.+.+++..+.+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~~~~~~~ 46 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAPGAEAAL 46 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCHHHHHHH
Confidence 36899999999999999998899999 99999998866543
No 341
>PRK08013 oxidoreductase; Provisional
Probab=96.43 E-value=0.0061 Score=42.21 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=29.5
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
..|+|+|+|++|++++..+...|.+ |.++++.++
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~-v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLR-VAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCE-EEEEeCCCC
Confidence 3599999999999988888888999 999987765
No 342
>PRK05884 short chain dehydrogenase; Provisional
Probab=96.43 E-value=0.01 Score=37.86 Aligned_cols=37 Identities=14% Similarity=0.085 Sum_probs=31.7
Q ss_pred EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
+++|.|+ |++|..+++.....|.+ |+.+++++++.+.
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~-v~~~~r~~~~~~~ 39 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHK-VTLVGARRDDLEV 39 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 5899998 89999999988888998 8888888877653
No 343
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=96.43 E-value=0.012 Score=37.48 Aligned_cols=40 Identities=25% Similarity=0.158 Sum_probs=32.7
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
++++++|.|+ |.+|..+++.....|.. |+..++++++.+.
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~~-v~~~~~~~~~~~~ 45 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGAI-VGLHGTRVEKLEA 45 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCCHHHHHH
Confidence 4679999998 99999999888888986 8777777666543
No 344
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=96.43 E-value=0.012 Score=39.95 Aligned_cols=40 Identities=15% Similarity=-0.007 Sum_probs=33.0
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556 54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI 94 (100)
Q Consensus 54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~ 94 (100)
-..+.+|||.|+ |.+|..+++.+...|.+ |+++++++++.
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~-V~~~~r~~~~~ 47 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRGYT-VHATLRDPAKS 47 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCChHHH
Confidence 346789999998 99999999999889998 88877766543
No 345
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.42 E-value=0.011 Score=37.64 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=30.9
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-ecChhhhh
Q psy16556 57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVC-KYVGIRIF 95 (100)
Q Consensus 57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~-~~~~~~~~ 95 (100)
+++++|.|+ |.+|..++..+...|++ |+++ ++++++.+
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~~~r~~~~~~ 44 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGAK-VVIAYDINEEAAQ 44 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCCCHHHHH
Confidence 568999998 99999998888788998 7777 77766543
No 346
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.025 Score=36.27 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=45.8
Q ss_pred ChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556 32 TLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 32 ~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~ 99 (100)
+.....++.........++...+++|++||-+|+|. |..++-+++..+ + |+.+++.++-.+.+++
T Consensus 48 pi~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGs-GY~aAvla~l~~-~-V~siEr~~~L~~~A~~ 112 (209)
T COG2518 48 PIGCGQTISAPHMVARMLQLLELKPGDRVLEIGTGS-GYQAAVLARLVG-R-VVSIERIEELAEQARR 112 (209)
T ss_pred cCCCCceecCcHHHHHHHHHhCCCCCCeEEEECCCc-hHHHHHHHHHhC-e-EEEEEEcHHHHHHHHH
Confidence 333444453333344456888999999999999864 677777888877 4 9999998886666543
No 347
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.41 E-value=0.0095 Score=38.78 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=30.5
Q ss_pred CCCEEEEEcCC---HHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556 56 LGTSVLVLSAG---PIGLVTILAAKAYGARVICVCKYVGIR 93 (100)
Q Consensus 56 ~g~~vli~G~G---~~G~~~~~l~~~~g~~~v~~~~~~~~~ 93 (100)
.|+.++|.|++ ++|..+++.....|++ |++++++++.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~-v~l~~r~~~~ 48 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAE-LAVTYLNDKA 48 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCE-EEEEeCChhh
Confidence 47899999973 8999999888889998 8888777543
No 348
>PRK07538 hypothetical protein; Provisional
Probab=96.41 E-value=0.0078 Score=41.84 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=29.4
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
.|+|+|+|+.|+++...++..|.+ |.++++.++
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~-v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIE-VVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc-EEEEEcCCc
Confidence 589999999999999999999999 999987654
No 349
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=96.41 E-value=0.013 Score=37.54 Aligned_cols=35 Identities=23% Similarity=0.154 Sum_probs=30.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
.+++++|.|+ |++|..++..+...|++ |+.+++++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~-vi~~~r~~ 39 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGAD-IVGAGRSE 39 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCch
Confidence 4789999998 89999999988889998 88887754
No 350
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.41 E-value=0.015 Score=39.04 Aligned_cols=40 Identities=10% Similarity=0.133 Sum_probs=34.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
++|.|+|+|.+|..++..+...|.+ |+++++++++.+.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~-V~~~d~~~~~~~~~~ 44 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQ-VVLIDVMEGALERAR 44 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCHHHHHHHH
Confidence 6799999999999988888888987 999999888776543
No 351
>PRK07775 short chain dehydrogenase; Provisional
Probab=96.41 E-value=0.013 Score=38.36 Aligned_cols=39 Identities=21% Similarity=0.088 Sum_probs=31.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
+.++++|.|+ |.+|..+++.+...|++ |+++.+++++.+
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~-V~~~~r~~~~~~ 48 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAGFP-VALGARRVEKCE 48 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence 3468999998 99999999888888997 888877765543
No 352
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.40 E-value=0.0061 Score=42.16 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=30.2
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
...|+|+|+|+.|++++..+...|.+ |.++++.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLR-IALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCE-EEEEecCCc
Confidence 35699999999999998888889998 999987654
No 353
>PLN02686 cinnamoyl-CoA reductase
Probab=96.39 E-value=0.011 Score=40.59 Aligned_cols=40 Identities=13% Similarity=-0.015 Sum_probs=32.5
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556 54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI 94 (100)
Q Consensus 54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~ 94 (100)
...+++|||.|+ |.+|..++..+...|.+ |+++.++.++.
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~-V~~~~r~~~~~ 90 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYS-VRIAVDTQEDK 90 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCCE-EEEEeCCHHHH
Confidence 345789999998 99999999999999998 77766665443
No 354
>PLN02583 cinnamoyl-CoA reductase
Probab=96.38 E-value=0.011 Score=39.35 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=29.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
++++|+|.|+ |.+|..++..+...|.+ |+++.++
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~-V~~~~R~ 39 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGYT-VHAAVQK 39 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCE-EEEEEcC
Confidence 4678999998 99999999999999998 8888764
No 355
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.38 E-value=0.01 Score=40.50 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR 93 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~ 93 (100)
.|++|.|+|.|.+|..+++.++.+|.+ |++.+++++.
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~~~ 185 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGMR-ILYYSRTRKP 185 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCCCh
Confidence 478999999999999999999999998 9988876543
No 356
>PRK09126 hypothetical protein; Provisional
Probab=96.37 E-value=0.0076 Score=41.37 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=29.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
-.|+|+|+|+.|++++..+...|.+ |+++++.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLK-VTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCCc
Confidence 3599999999999999999889999 999987654
No 357
>PRK07806 short chain dehydrogenase; Provisional
Probab=96.37 E-value=0.011 Score=37.98 Aligned_cols=35 Identities=26% Similarity=0.200 Sum_probs=29.9
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
.+++++|.|+ |.+|..++..+...|.+ |+++.+++
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~~-V~~~~r~~ 40 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGAH-VVVNYRQK 40 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCCE-EEEEeCCc
Confidence 4689999998 99999999988888998 88777754
No 358
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.37 E-value=0.014 Score=39.27 Aligned_cols=42 Identities=17% Similarity=0.051 Sum_probs=34.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhhhhhh
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRIFPYK 98 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~~~~~ 98 (100)
..+|.|+|.|.+|...+..++..|. .+|+++++++++.+.++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~ 48 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR 48 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH
Confidence 3689999999999999998888885 34999999988776654
No 359
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.36 E-value=0.009 Score=45.98 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
..|++|+|+|+||.|+.++..+...|.+ |++.+..+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~-VtVfE~~~ 339 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFP-VTVFEAFH 339 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCe-EEEEeeCC
Confidence 4589999999999999999999999998 88887653
No 360
>PRK06126 hypothetical protein; Provisional
Probab=96.36 E-value=0.0073 Score=43.47 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=29.8
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
..|+|+|+|++|+++...+...|.+ |+++++.+.
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~~G~~-v~viEr~~~ 41 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGRRGVD-SILVERKDG 41 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCc-EEEEeCCCC
Confidence 4699999999999999988999999 899987653
No 361
>PRK06953 short chain dehydrogenase; Provisional
Probab=96.36 E-value=0.012 Score=37.31 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=31.9
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
++++|.|+ |.+|..+++.+...|++ |+.+++++++.+.+
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~-v~~~~r~~~~~~~~ 41 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWR-VIATARDAAALAAL 41 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCE-EEEEECCHHHHHHH
Confidence 47899998 99999998888788998 88888887765543
No 362
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.36 E-value=0.014 Score=37.50 Aligned_cols=38 Identities=24% Similarity=0.167 Sum_probs=30.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE-EecChhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICV-CKYVGIRI 94 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~-~~~~~~~~ 94 (100)
++++++|.|+ |.+|..++..+...|.+ |++ ..+++++.
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~-v~~~~~r~~~~~ 42 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGYD-IAVNYARSRKAA 42 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHH
Confidence 4678999998 99999999999999998 554 45555543
No 363
>PRK12367 short chain dehydrogenase; Provisional
Probab=96.35 E-value=0.014 Score=37.99 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=30.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
.+++++|.|+ |++|..+++.....|.+ |+++++++
T Consensus 13 ~~k~~lITGas~gIG~ala~~l~~~G~~-Vi~~~r~~ 48 (245)
T PRK12367 13 QGKRIGITGASGALGKALTKAFRAKGAK-VIGLTHSK 48 (245)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCE-EEEEECCc
Confidence 3689999998 89999999998899998 88887765
No 364
>PRK06484 short chain dehydrogenase; Validated
Probab=96.35 E-value=0.012 Score=42.03 Aligned_cols=40 Identities=25% Similarity=0.174 Sum_probs=34.7
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|.|+ +++|..+++.+...|++ |+.+++++++.+.
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~ 44 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQ-VVVADRNVERARE 44 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 5789999998 89999999999999998 8999888777654
No 365
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=96.35 E-value=0.0093 Score=41.28 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=30.2
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
..|+|+|+|+.|+.+...++..|.+ |.++++.++
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~-v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGID-NVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCC-EEEEECCCC
Confidence 4699999999999999888889999 999988764
No 366
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=96.35 E-value=0.011 Score=40.07 Aligned_cols=37 Identities=24% Similarity=0.109 Sum_probs=31.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR 93 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~ 93 (100)
+|+++||.|+ |.+|..+++.+...|.+ |+++++++..
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~ 40 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGAE-VYGYSLDPPT 40 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCCE-EEEEeCCCcc
Confidence 4789999998 99999999999999988 8888776543
No 367
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.34 E-value=0.017 Score=38.60 Aligned_cols=39 Identities=21% Similarity=0.093 Sum_probs=33.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
-++|.|+|+|.+|...++.+...|.+ |++.++++++.+.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~ 42 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMD-VWLLDSDPAALSR 42 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCe-EEEEeCCHHHHHH
Confidence 36799999999999999888888988 9999999888754
No 368
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.34 E-value=0.0074 Score=41.13 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=28.8
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 60 VLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 60 vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
|+|+|+|+.|++++..+...|.+ |+++++.+.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~-v~v~Er~~~ 33 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLK-IALIEATPA 33 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCE-EEEEeCCCc
Confidence 89999999999999888889998 999988764
No 369
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.33 E-value=0.01 Score=39.08 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=30.1
Q ss_pred CCCEEEEEcC-C--HHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 56 LGTSVLVLSA-G--PIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 56 ~g~~vli~G~-G--~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
+++.++|.|+ + ++|..+++.+...|++ |+.++++++
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~-V~~~~r~~~ 44 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAE-LAFTYQGEA 44 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCE-EEEecCchH
Confidence 5789999998 4 8999999998889998 887776643
No 370
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.33 E-value=0.013 Score=39.43 Aligned_cols=38 Identities=18% Similarity=0.137 Sum_probs=33.1
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+|.|+|+|.+|....+.+...|.+ |++.++++++.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~-V~v~d~~~~~~~~ 40 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHE-VRLWDADPAAAAA 40 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCe-eEEEeCCHHHHHH
Confidence 4699999999999998888888998 9999999877664
No 371
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.32 E-value=0.014 Score=41.38 Aligned_cols=36 Identities=28% Similarity=0.251 Sum_probs=31.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
..+++|+|+|+|++|+.++.+++..|.+ |++++.++
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~-V~~~d~~~ 49 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGAR-VTVVDDGD 49 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCc
Confidence 3578999999999999999999999998 88887554
No 372
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=96.32 E-value=0.01 Score=38.51 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=31.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR 93 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~ 93 (100)
.+++++|.|+ |++|..+++.+...|++ |+.+++++++
T Consensus 8 ~~k~vlItG~s~gIG~~la~~l~~~G~~-v~~~~~~~~~ 45 (266)
T PRK06171 8 QGKIIIVTGGSSGIGLAIVKELLANGAN-VVNADIHGGD 45 (266)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCccc
Confidence 4688999998 99999999999999998 8888776654
No 373
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.32 E-value=0.0093 Score=38.99 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=28.4
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
.|+|+|+|+.|+++...++..|.+ |.++++.+.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~-v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLR-VLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe-EEEEeccCC
Confidence 489999999999988888888998 999987654
No 374
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.31 E-value=0.015 Score=37.06 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
.|++|+|+|+|.+|...+..+...|++ |+++++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~-V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAH-IVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEcCC
Confidence 578999999999999999888889987 8877654
No 375
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=96.30 E-value=0.011 Score=39.55 Aligned_cols=37 Identities=22% Similarity=-0.008 Sum_probs=31.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR 93 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~ 93 (100)
.++++||.|+ |.+|..++..+...|.+ |+++.+++++
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~-V~~~~r~~~~ 41 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYT-INATVRDPKD 41 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCE-EEEEEcCCcc
Confidence 4789999998 99999999998889998 8777666543
No 376
>PRK06834 hypothetical protein; Provisional
Probab=96.30 E-value=0.0097 Score=42.54 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=29.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
..|+|+|+|++|++++..+...|.+ |.++++.++
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~-v~vlEr~~~ 37 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVD-VAIVERRPN 37 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCc-EEEEecCCC
Confidence 4699999999999998888889999 999987654
No 377
>PRK06114 short chain dehydrogenase; Provisional
Probab=96.29 E-value=0.014 Score=37.78 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=30.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
.+++++|.|+ |++|..+++.+...|++ |++++++++
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~-v~~~~r~~~ 43 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAGAD-VALFDLRTD 43 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCcc
Confidence 4789999998 89999999999999998 888877643
No 378
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.29 E-value=0.0099 Score=41.33 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=29.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
+|+|+|+||.|.++...+...|.+ |.++++.+.
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~~~ 34 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERKPD 34 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc-EEEEecCCC
Confidence 589999999999999888899999 999987643
No 379
>PRK07577 short chain dehydrogenase; Provisional
Probab=96.28 E-value=0.012 Score=37.29 Aligned_cols=37 Identities=27% Similarity=0.256 Sum_probs=31.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR 93 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~ 93 (100)
.+++++|.|+ |.+|..+++.+...|.+ |+.+++++++
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~-v~~~~r~~~~ 39 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQ-VIGIARSAID 39 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEEeCCccc
Confidence 3678999998 99999999998889988 8888776544
No 380
>KOG0725|consensus
Probab=96.28 E-value=0.015 Score=38.56 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=36.2
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
-.|+.++|.|+ .++|..++..+...|++ |+++++++++.+..
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga~-v~i~~r~~~~~~~~ 48 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGAK-VVITGRSEERLEET 48 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence 35788999998 79999999999999999 99999998876543
No 381
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.28 E-value=0.0094 Score=37.13 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=22.7
Q ss_pred EEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 61 LVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 61 li~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
+|+|+|+.|++++..++..|.+.++++++++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 5899999999999999999998788888764
No 382
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.28 E-value=0.0089 Score=43.28 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=26.8
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
++|+|+|+|+.|+.++.-++..|.+ +++.+++++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~-~~~fE~~~~ 35 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLE-VTCFEKSDD 35 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-E-EEEEESSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCC-CeEEecCCC
Confidence 6899999999999999999999998 888887653
No 383
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.27 E-value=0.015 Score=38.87 Aligned_cols=39 Identities=18% Similarity=0.075 Sum_probs=34.4
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
++|.|+|+|.+|.-.++.+...|.+ |+..+.++++.+.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~~~~~~ 44 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVD-VLVFETTEELATAG 44 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCE-EEEEECCHHHHHHH
Confidence 4799999999999988888888998 99999999988763
No 384
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.27 E-value=0.014 Score=43.04 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=38.1
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~ 99 (100)
.++|+|.|.|.+|+.+++.++..|.+ ++++|.++++.+.+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~~v~~~~~ 441 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVK-MTVLDHDPDHIETLRK 441 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCC-EEEEECCHHHHHHHHh
Confidence 46899999999999999999999999 9999999999887764
No 385
>PRK06720 hypothetical protein; Provisional
Probab=96.27 E-value=0.02 Score=35.34 Aligned_cols=38 Identities=24% Similarity=0.146 Sum_probs=31.9
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI 94 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~ 94 (100)
.++.++|.|+ +++|..++......|++ |+++++++++.
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~-V~l~~r~~~~~ 53 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAK-VIVTDIDQESG 53 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCE-EEEEECCHHHH
Confidence 5789999998 79999998888888988 88888776654
No 386
>PRK05650 short chain dehydrogenase; Provisional
Probab=96.26 E-value=0.015 Score=37.91 Aligned_cols=37 Identities=16% Similarity=0.088 Sum_probs=31.0
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
++++|.|+ |++|..++..+...|.+ |+.+++++++.+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~-V~~~~r~~~~~~ 38 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWR-LALADVNEEGGE 38 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence 36899998 99999998888888998 888888777654
No 387
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.25 E-value=0.013 Score=30.75 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=25.0
Q ss_pred EEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 62 VLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 62 i~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
|+|+|..|+.+...++..|.+ |.+.+.++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~-v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYR-VTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSE-EEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCc-EEEEecCcc
Confidence 789999999999998888997 999987653
No 388
>PRK08303 short chain dehydrogenase; Provisional
Probab=96.25 E-value=0.016 Score=38.93 Aligned_cols=34 Identities=26% Similarity=0.188 Sum_probs=30.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
.+++++|.|+ +++|..+++.....|++ |++++++
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G~~-Vv~~~r~ 41 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAGAT-VYVTGRS 41 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEecc
Confidence 4789999998 89999999999889998 8888776
No 389
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.24 E-value=0.0097 Score=41.30 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=29.2
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
.|+|+|+||.|..++..++..|++ |++++..++
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~-VlvlEk~~~ 37 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLD-VLVLEKGSE 37 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCe-EEEEecCCC
Confidence 489999999999999999999988 999987543
No 390
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.24 E-value=0.035 Score=38.96 Aligned_cols=45 Identities=22% Similarity=0.163 Sum_probs=36.2
Q ss_pred HHHHhcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 47 HACKRSGV-GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 47 ~~~~~~~~-~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
.+.+..+. -.|.+|.|.|.|.+|..+++.+...|++ |++++.++.
T Consensus 196 ~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAk-vva~sds~g 241 (411)
T COG0334 196 EALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAK-VVAVSDSKG 241 (411)
T ss_pred HHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCE-EEEEEcCCC
Confidence 34444444 4899999999999999999999999999 777765544
No 391
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.24 E-value=0.012 Score=39.81 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
.|+++.|+|.|.+|..+++.++.+|.+ |++.++.
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~-V~~~d~~ 177 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAK-VVYYSTS 177 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCE-EEEECCC
Confidence 589999999999999999999999998 9988764
No 392
>PRK06940 short chain dehydrogenase; Provisional
Probab=96.23 E-value=0.016 Score=38.09 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=30.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
++.++|.|+|++|..++..+. .|.+ |+.+++++++.+.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~~-Vv~~~r~~~~~~~ 39 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGKK-VLLADYNEENLEA 39 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCCE-EEEEeCCHHHHHH
Confidence 457888898999999888775 7887 8888888766543
No 393
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.22 E-value=0.053 Score=36.59 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=36.8
Q ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCcEEEEEecChhhhhhh
Q psy16556 52 SGVGLGTSVLVLSAGPIGLVTILAAKA-YGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 52 ~~~~~g~~vli~G~G~~G~~~~~l~~~-~g~~~v~~~~~~~~~~~~~ 97 (100)
..-...++++|+|+|..|...++.... .+.++|.+.+++++|.+.+
T Consensus 120 La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~ 166 (304)
T PRK07340 120 LAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAF 166 (304)
T ss_pred hCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence 333567899999999999998888764 6878899999998876643
No 394
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.21 E-value=0.015 Score=42.72 Aligned_cols=42 Identities=21% Similarity=0.119 Sum_probs=37.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~ 99 (100)
.++++|.|.|.+|+.+++.++..|.+ ++++|.++++.+.+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~~v~~~~~ 441 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMR-ITVLERDISAVNLMRK 441 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCC-EEEEECCHHHHHHHHh
Confidence 36799999999999999999999999 9999999999887764
No 395
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.21 E-value=0.0075 Score=41.03 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=38.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~ 99 (100)
..+|.|+|+|-+|.-+..++..+|++ |...+.|.+|++.+..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~-Vtild~n~~rl~~ldd 209 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGAD-VTILDLNIDRLRQLDD 209 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCe-eEEEecCHHHHhhhhH
Confidence 45689999999999999999999999 9999999999988754
No 396
>PRK06483 dihydromonapterin reductase; Provisional
Probab=96.20 E-value=0.016 Score=37.01 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=30.6
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556 57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR 93 (100)
Q Consensus 57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~ 93 (100)
+++++|.|+ |++|..+++.+...|++ |+.+++++++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~ 38 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQP-VIVSYRTHYP 38 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCchh
Confidence 468999998 89999999988889998 8888877653
No 397
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=96.20 E-value=0.016 Score=40.29 Aligned_cols=42 Identities=24% Similarity=0.199 Sum_probs=34.9
Q ss_pred hcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556 51 RSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR 93 (100)
Q Consensus 51 ~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~ 93 (100)
+.+...+.+|+|.|+ |.+|..++..+...|.+ |+++++++++
T Consensus 54 ~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~-V~~l~R~~~~ 96 (390)
T PLN02657 54 RSKEPKDVTVLVVGATGYIGKFVVRELVRRGYN-VVAVAREKSG 96 (390)
T ss_pred cccCCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEEechhh
Confidence 345567889999998 99999999988888988 8888887653
No 398
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.20 E-value=0.012 Score=40.55 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=29.8
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
..|+|+|+|+.|+++...++..|.+ |+++++.+.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~-v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGID-SVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCC-EEEEEcCCc
Confidence 4699999999999998888889999 899987764
No 399
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=96.20 E-value=0.017 Score=39.40 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR 93 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~ 93 (100)
.|.+|.|+|.|.+|..+++.++.+|.+ |++.++++++
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~-V~~~d~~~~~ 181 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGAT-ITAYDAYPNK 181 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEeCChhH
Confidence 478899999999999999999999998 9999877654
No 400
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=96.19 E-value=0.019 Score=36.93 Aligned_cols=36 Identities=17% Similarity=0.041 Sum_probs=30.2
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556 58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI 94 (100)
Q Consensus 58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~ 94 (100)
++++|.|+ |.+|..+++.+...|++ |+.+.+++++.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~-v~~~~r~~~~~ 37 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFA-VAVADLNEETA 37 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHH
Confidence 46899998 99999999888889998 88888776544
No 401
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.17 E-value=0.015 Score=37.95 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=28.8
Q ss_pred CCCEEEEEcC-C--HHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 56 LGTSVLVLSA-G--PIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 56 ~g~~vli~G~-G--~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
.|+.++|.|+ + ++|..+++.+...|++ |+..++++
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~-v~~~~r~~ 44 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAE-LWFTYQSE 44 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCE-EEEEeCch
Confidence 5788999998 4 7999998888888998 87777663
No 402
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.17 E-value=0.018 Score=37.66 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
...+|+|+|+|++|..++..+...|..++.++|.+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 35789999999999999999999999888888754
No 403
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.17 E-value=0.012 Score=40.61 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=28.2
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
.|+|+|+|+.|++++..+...|.+ |++++..+
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~-v~l~E~~~ 36 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRS-VAVIEGGE 36 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCc-EEEEcCCC
Confidence 699999999999998888888998 99998654
No 404
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.16 E-value=0.017 Score=36.70 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=30.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
..+|+|+|+|++|..+++.+...|..+++.+|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4779999999999999999999999879998876
No 405
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=96.16 E-value=0.014 Score=38.97 Aligned_cols=37 Identities=19% Similarity=-0.005 Sum_probs=31.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR 93 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~ 93 (100)
.+++|||.|+ |.+|..++..+...|.+ |+++++++++
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~-V~~~~r~~~~ 40 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYT-VKATVRDPND 40 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCE-EEEEEcCCCc
Confidence 4688999998 99999999999889998 8877766543
No 406
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.16 E-value=0.018 Score=37.33 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=29.6
Q ss_pred CCCEEEEEcCC---HHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 56 LGTSVLVLSAG---PIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 56 ~g~~vli~G~G---~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
.|++++|.|++ ++|..+++.+...|++ |+.+.+++
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~-Vi~~~r~~ 43 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGAT-VIYTYQND 43 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEecCch
Confidence 57899999974 8999998888889998 88887764
No 407
>PRK07574 formate dehydrogenase; Provisional
Probab=96.15 E-value=0.017 Score=40.27 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
.|++|.|+|.|.+|+.+++.++.+|.+ |++.+++.
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~~-V~~~dr~~ 225 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDVK-LHYTDRHR 225 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECCCC
Confidence 478999999999999999999999998 99988765
No 408
>PRK06141 ornithine cyclodeaminase; Validated
Probab=96.14 E-value=0.058 Score=36.54 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=35.2
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHH-HcCCcEEEEEecChhhhhhh
Q psy16556 53 GVGLGTSVLVLSAGPIGLVTILAAK-AYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 53 ~~~~g~~vli~G~G~~G~~~~~l~~-~~g~~~v~~~~~~~~~~~~~ 97 (100)
.-+..++++|+|+|..|...+.... ..+.++|.+.++++++.+.+
T Consensus 121 a~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~ 166 (314)
T PRK06141 121 ARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEAL 166 (314)
T ss_pred CCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence 3356789999999999999876444 46777799999998886543
No 409
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.14 E-value=0.021 Score=39.19 Aligned_cols=43 Identities=21% Similarity=0.129 Sum_probs=34.2
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHH-cCCcEEEEEecChhhhhhh
Q psy16556 55 GLGTSVLVLSA-GPIGLVTILAAKA-YGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 55 ~~g~~vli~G~-G~~G~~~~~l~~~-~g~~~v~~~~~~~~~~~~~ 97 (100)
-.+++|+|+|+ |.+|..+++.+.. .|.++++.+.+++++.+.+
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~L 197 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQEL 197 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHH
Confidence 36789999999 8999998888764 5776699998887776553
No 410
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.14 E-value=0.011 Score=40.67 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=28.9
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
..|+|+|+|++|+++...+...|.+ |.++++.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~-v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGAS-VALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCe-EEEEeCCCC
Confidence 4599999999999988888888998 999987643
No 411
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.13 E-value=0.019 Score=36.54 Aligned_cols=36 Identities=25% Similarity=0.171 Sum_probs=29.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
.+++++|.|+ |.+|..++..+...|++ |+++.++++
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~~-v~~~~~~~~ 40 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGAN-VVINYASSE 40 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCch
Confidence 4578999998 99999999999989998 766655544
No 412
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=96.13 E-value=0.011 Score=42.60 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=29.5
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
..|+|+|+|+.|+++...+...|.+ |+++++.++
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~~-v~viE~~~~ 57 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGVP-VVLLDDDDT 57 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCc-EEEEeCCCC
Confidence 4699999999999998888889999 888887653
No 413
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.13 E-value=0.072 Score=35.62 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=34.7
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556 54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK 99 (100)
Q Consensus 54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~ 99 (100)
..++++|+-+|+|. |.+++.+++ .|+.+|+++|.++...+.+++
T Consensus 157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~ 200 (288)
T TIGR00406 157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARK 200 (288)
T ss_pred cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHH
Confidence 45789999999988 777766665 577669999999887776653
No 414
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.12 E-value=0.012 Score=42.48 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=30.2
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
...|+|+|+|+.|+++...+...|.+ |.++++.++
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~-v~v~Er~~~ 44 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVR-VLVLERWPT 44 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc-EEEEecCCC
Confidence 35699999999999998888888999 999987654
No 415
>PRK07588 hypothetical protein; Provisional
Probab=96.12 E-value=0.014 Score=40.18 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=28.6
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
+|+|+|+|+.|+++...+...|.+ |+++++.++
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~-v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHE-PTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCc-eEEEeCCCC
Confidence 689999999999988888888999 999987654
No 416
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.11 E-value=0.022 Score=37.79 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=33.3
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
++|.|+|+|.+|...+..+...|.+ |++++.++++.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~-V~~~d~~~~~~~~ 41 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYD-VVMVDISDAAVDR 41 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCc-eEEEeCCHHHHHH
Confidence 4799999999999998888888998 9999999988753
No 417
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.09 E-value=0.018 Score=39.04 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
.|++|.|+|.|.+|..+++.++.+|.+ |++.+++++
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~~-V~~~~~~~~ 170 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGFP-LRCWSRSRK 170 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCCC
Confidence 579999999999999999999999998 888876554
No 418
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.09 E-value=0.019 Score=38.13 Aligned_cols=39 Identities=13% Similarity=0.012 Sum_probs=33.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
+|.|+|.|.+|...+..++..|.+ |++.++++++.+.++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~-V~~~d~~~~~~~~a~ 40 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHT-VYGVSRRESTCERAI 40 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHH
Confidence 588999999999888888888887 999999988776653
No 419
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=96.09 E-value=0.022 Score=36.96 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=30.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEe-cChhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCK-YVGIRI 94 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~-~~~~~~ 94 (100)
++++++|.|+ +++|..++......|++ |+.+. +++++.
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~~~~~~ 46 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFTYNSNVEEA 46 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHH
Confidence 5789999998 89999999988889998 76664 344443
No 420
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.09 E-value=0.023 Score=40.52 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=33.1
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556 54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR 93 (100)
Q Consensus 54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~ 93 (100)
.-.+++|+|+|.|..|++++.+++..|++ |++.|+++.+
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~-V~~~D~~~~~ 50 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCD-VVVADDNETA 50 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCE-EEEECCChHH
Confidence 34567899999999999999999999996 9999876544
No 421
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.09 E-value=0.036 Score=39.70 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=34.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+++++|+|+|++|..++..+...|++ +++.++++++.+.
T Consensus 331 ~~k~vlIiGaGgiG~aia~~L~~~G~~-V~i~~R~~~~~~~ 370 (477)
T PRK09310 331 NNQHVAIVGAGGAAKAIATTLARAGAE-LLIFNRTKAHAEA 370 (477)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 578999999999999999999999996 8888888776654
No 422
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=96.08 E-value=0.03 Score=34.61 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh-hhhhhh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI-RIFPYK 98 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~-~~~~~~ 98 (100)
.+++|.|+|-|..|.+..+-+|..|.+ |++..+... ..+.++
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~-V~Vglr~~s~s~~~A~ 45 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVN-VIVGLREGSASWEKAK 45 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-E-EEEEE-TTCHHHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCC-EEEEecCCCcCHHHHH
Confidence 578999999999999999999999998 666555544 555554
No 423
>PRK06185 hypothetical protein; Provisional
Probab=96.08 E-value=0.014 Score=40.27 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=28.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
...|+|+|+|++|++++..+...|.+ |++++..+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~-v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVD-VTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence 35699999999999987777778998 99998764
No 424
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.08 E-value=0.02 Score=36.98 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=30.4
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
+.+|+|+|+|++|..++..+...|..+++++|.+
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 5789999999999999999999999888888654
No 425
>PLN02650 dihydroflavonol-4-reductase
Probab=96.08 E-value=0.017 Score=39.20 Aligned_cols=38 Identities=18% Similarity=0.111 Sum_probs=31.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI 94 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~ 94 (100)
..++|||.|+ |.+|..++..+...|.+ |+++++++++.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~-V~~~~r~~~~~ 42 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYT-VRATVRDPANV 42 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCE-EEEEEcCcchh
Confidence 4578999998 99999999999889998 88777765443
No 426
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.07 E-value=0.034 Score=37.94 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=39.8
Q ss_pred HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhhhhhh
Q psy16556 48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRIFPYK 98 (100)
Q Consensus 48 ~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~~~~~ 98 (100)
.++...++++++||.+|+| .|..++.+++..+. ..|++++.+++..+.++
T Consensus 72 ll~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar 122 (322)
T PRK13943 72 FMEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK 122 (322)
T ss_pred HHHhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence 3355678899999999998 48899999998764 35999999998766554
No 427
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.07 E-value=0.017 Score=44.72 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
..|++|+|+|+||.|+.++..+...|.+ |++.+..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEccc
Confidence 4689999999999999999999999999 9999864
No 428
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=96.07 E-value=0.023 Score=38.21 Aligned_cols=38 Identities=18% Similarity=0.153 Sum_probs=31.8
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcC-CcEEEEEecChhhhh
Q psy16556 57 GTSVLVLSA-GPIGLVTILAAKAYG-ARVICVCKYVGIRIF 95 (100)
Q Consensus 57 g~~vli~G~-G~~G~~~~~l~~~~g-~~~v~~~~~~~~~~~ 95 (100)
+++++|.|+ +++|..+++.+...| .+ |+.+.+++++.+
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~-V~l~~r~~~~~~ 42 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWH-VIMACRDFLKAE 42 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCE-EEEEeCCHHHHH
Confidence 678999998 899999888888889 76 888888877654
No 429
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.07 E-value=0.014 Score=40.24 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=29.2
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
...|+|+|+|++|++++..+...|.+ |.++++.+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~-v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLS-VALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCE-EEEEeCCC
Confidence 45699999999999988888888998 99998764
No 430
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.06 E-value=0.021 Score=41.16 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCCHHHHHHHH-HHHHcCCcEEEEEecCh
Q psy16556 55 GLGTSVLVLSAGPIGLVTIL-AAKAYGARVICVCKYVG 91 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~-l~~~~g~~~v~~~~~~~ 91 (100)
....+|+|+|+||.|+.++. +++..|.+ |.+.++.+
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~-VtlfEk~p 73 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVK-VDIFEKLP 73 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCe-EEEEecCC
Confidence 35679999999999999866 67777888 88877654
No 431
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.06 E-value=0.019 Score=39.36 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=31.1
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
+.+|+|+|+|++|..+++.+...|..++.++|.+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 47899999999999999999999998788888764
No 432
>PRK09135 pteridine reductase; Provisional
Probab=96.06 E-value=0.022 Score=36.39 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=29.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
.+++++|.|+ |.+|..+++.....|++ |++++++
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~-v~~~~r~ 39 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGYR-VAIHYHR 39 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCC
Confidence 4678999998 99999999888888998 8888765
No 433
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.06 E-value=0.021 Score=40.39 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=30.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
..+++|+|+|+|+.|+.++..++..|.+ |++++..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~-V~vie~~ 165 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHS-VTVFEAL 165 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCc-EEEEecC
Confidence 3578999999999999999999999998 8888764
No 434
>PRK12743 oxidoreductase; Provisional
Probab=96.06 E-value=0.024 Score=36.65 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=27.3
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec
Q psy16556 57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKY 89 (100)
Q Consensus 57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~ 89 (100)
+++++|.|+ |++|..+++.+...|++ |+.+.+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~-V~~~~~ 34 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFD-IGITWH 34 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 578999998 89999999999999998 766643
No 435
>PRK06924 short chain dehydrogenase; Provisional
Probab=96.05 E-value=0.022 Score=36.56 Aligned_cols=33 Identities=9% Similarity=0.065 Sum_probs=28.6
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
++++|.|+ |++|..+++.+...|++ |+++++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~-V~~~~r~~ 35 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTH-VISISRTE 35 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCE-EEEEeCCc
Confidence 47999998 99999998888888998 88888776
No 436
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.05 E-value=0.023 Score=38.77 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
.+.+++|+|+|+|+.|+.++..++..|.+ |+++++.+
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~-v~lie~~~ 51 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYE-VHVYDKLP 51 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence 45678999999999999999998888988 88887654
No 437
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=96.05 E-value=0.024 Score=36.68 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=29.9
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
.+++++|.|+ +++|..+++.+...|++ |+++++++
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~-vv~~~~~~ 42 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGAD-IVGVGVAE 42 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCch
Confidence 4789999998 89999999998899998 77776643
No 438
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.05 E-value=0.015 Score=39.39 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
.|+++.|+|.|.+|..+++.++.+|.+ |+..++.
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~~ 179 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEHK 179 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCC
Confidence 478999999999999999999999998 8888754
No 439
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.04 E-value=0.016 Score=44.91 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=31.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
..+++|+|+|+|+.|+.++..++..|.+ |++++..+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~-VtV~Ek~~ 572 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHP-VTVFEREE 572 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCe-EEEEeccc
Confidence 4578999999999999999999999998 88887543
No 440
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.04 E-value=0.012 Score=40.22 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=28.6
Q ss_pred EEEEcCCHHHHHHHHHHHHcC-CcEEEEEecChh
Q psy16556 60 VLVLSAGPIGLVTILAAKAYG-ARVICVCKYVGI 92 (100)
Q Consensus 60 vli~G~G~~G~~~~~l~~~~g-~~~v~~~~~~~~ 92 (100)
|+|+|+|+.|++++..+...| .+ |+++++.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~-v~v~E~~~~ 34 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIK-IALIEANSP 34 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCce-EEEEeCCCc
Confidence 899999999999999999999 98 899987654
No 441
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.04 E-value=0.036 Score=30.28 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=28.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~ 89 (100)
-.+++++|+|.|.+|..+++.+...+..++.+.++
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46789999999999999999999886555776654
No 442
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.04 E-value=0.017 Score=40.02 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=30.9
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
.+|-|+|+|-+|.|+++-++.+|.+ +++.+++++
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~-v~vLdp~~~ 35 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIK-VIVLDPDAD 35 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCE-EEEecCCCC
Confidence 5789999999999999999999999 888887655
No 443
>PRK08223 hypothetical protein; Validated
Probab=96.03 E-value=0.019 Score=38.57 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
...+|+|+|+|++|..+++.+...|..++..+|.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 357899999999999999999999999888887643
No 444
>PRK13984 putative oxidoreductase; Provisional
Probab=96.03 E-value=0.019 Score=41.94 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=32.1
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
.+++++|+|+|+|+.|+.++..++..|.+ |++++..+
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~~-v~vie~~~ 316 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGYE-VTVYESLS 316 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCCe-EEEEecCC
Confidence 45689999999999999999999999998 88886543
No 445
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.03 E-value=0.022 Score=36.51 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
...+|+|+|+|++|..+++.+...|..+++.+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35679999999999999999999999989988876
No 446
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.03 E-value=0.016 Score=43.05 Aligned_cols=37 Identities=35% Similarity=0.234 Sum_probs=32.9
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
.++..+|+|+|+|+.|++++..++..|.+ |.++++.+
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~-V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGFD-VLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCCe-EEEEeccc
Confidence 35678899999999999999999999999 99998765
No 447
>PRK07791 short chain dehydrogenase; Provisional
Probab=96.02 E-value=0.025 Score=37.43 Aligned_cols=36 Identities=39% Similarity=0.330 Sum_probs=30.1
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
-.+++++|.|+ +++|..+++.+...|++ |++++++.
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~-vii~~~~~ 40 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGAR-VVVNDIGV 40 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEeeCCc
Confidence 35789999998 89999999888889998 77776553
No 448
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=96.02 E-value=0.018 Score=38.77 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=31.0
Q ss_pred EEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556 60 VLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 60 vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~ 97 (100)
|||.|+ |.+|.-+++-....+.++++.+++++.++-.+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l 39 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYEL 39 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHH
Confidence 789998 99999998888888988899999998876544
No 449
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.02 E-value=0.015 Score=39.91 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=29.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
..|+|+|+|+.|++++..+...|.+ |.++++.+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~-v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLR-VALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCe-EEEEecCCC
Confidence 3599999999999988888888998 999987655
No 450
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=96.01 E-value=0.018 Score=37.93 Aligned_cols=33 Identities=27% Similarity=0.523 Sum_probs=28.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
-.|+|+|+|+.|+++...+...|.+ |++++++.
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G~~-V~vlEk~~ 54 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNGLK-VCVLERSL 54 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence 4599999999999999888889998 88887764
No 451
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.01 E-value=0.019 Score=38.74 Aligned_cols=35 Identities=31% Similarity=0.330 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
.|+++.|+|.|.+|..+++.++.+|.+ |++.+++.
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~afG~~-V~~~~r~~ 155 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAFGMN-IYAYTRSY 155 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCC
Confidence 489999999999999999999999998 98888753
No 452
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.00 E-value=0.026 Score=39.59 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=37.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
...++++|.|.|.+|..+++.+...|.+ |++++.++++.+.++
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~-v~vid~~~~~~~~~~ 271 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYS-VKLIERDPERAEELA 271 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCHHHHHHHH
Confidence 3468899999999999999999999998 999999998876553
No 453
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.00 E-value=0.023 Score=39.86 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=34.4
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
+++|+|+|.+|..+++.+...|.+ ++++++++++.+.++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~-v~vid~~~~~~~~~~ 40 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENND-VTVIDTDEERLRRLQ 40 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHH
Confidence 689999999999999999999998 899999888877654
No 454
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.99 E-value=0.022 Score=33.95 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=28.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
+|+|+|+|++|..++..+...|.+++..+|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 48999999999999999999999889888765
No 455
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.99 E-value=0.022 Score=37.92 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
.+.+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45789999999999999999999998889888754
No 456
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.99 E-value=0.023 Score=39.41 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
.+.+|+|+|+|++|..++..+...|..++..+|.+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46789999999999999999999999889999876
No 457
>PRK07201 short chain dehydrogenase; Provisional
Probab=95.99 E-value=0.024 Score=41.56 Aligned_cols=39 Identities=26% Similarity=0.311 Sum_probs=33.5
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
+++++|.|+ |++|..++..+...|++ |+++++++++.+.
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~~-V~~~~r~~~~~~~ 410 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGAT-VFLVARNGEALDE 410 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence 678999998 89999999888888998 9999888876543
No 458
>PRK05855 short chain dehydrogenase; Validated
Probab=95.99 E-value=0.025 Score=40.51 Aligned_cols=40 Identities=28% Similarity=0.184 Sum_probs=34.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP 96 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~ 96 (100)
.+.+++|+|+ |++|..+++-+...|.+ |+.+++++++.+.
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r~~~~~~~ 354 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGAE-VVASDIDEAAAER 354 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence 4678999998 99999998888889998 9999888776653
No 459
>PRK06487 glycerate dehydrogenase; Provisional
Probab=95.98 E-value=0.018 Score=39.08 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
.|+++.|+|.|.+|..+++.++.+|.+ |++.++.
T Consensus 147 ~gktvgIiG~G~IG~~vA~~l~~fgm~-V~~~~~~ 180 (317)
T PRK06487 147 EGKTLGLLGHGELGGAVARLAEAFGMR-VLIGQLP 180 (317)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECCC
Confidence 478999999999999999999999998 8888754
No 460
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.98 E-value=0.016 Score=40.69 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=28.8
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
-.|+|+|+|+.|+.+...+...|.+ |+++++.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~-V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQ-VLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCe-EEEEEcCC
Confidence 4699999999999998888889998 99998754
No 461
>PRK12746 short chain dehydrogenase; Provisional
Probab=95.98 E-value=0.026 Score=36.28 Aligned_cols=38 Identities=21% Similarity=0.144 Sum_probs=29.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE-EecChhhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICV-CKYVGIRI 94 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~-~~~~~~~~ 94 (100)
.+++++|.|+ |.+|..+++.+...|.+ |++ ..+++++.
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~G~~-v~i~~~r~~~~~ 44 (254)
T PRK12746 5 DGKVALVTGASRGIGRAIAMRLANDGAL-VAIHYGRNKQAA 44 (254)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHH
Confidence 3678999998 99999999988888998 655 35655543
No 462
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=95.98 E-value=0.011 Score=43.54 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=29.3
Q ss_pred CCEEEEEcCCHHHHHHHHHHHH-cCCcEEEEEecChhh
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKA-YGARVICVCKYVGIR 93 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~-~g~~~v~~~~~~~~~ 93 (100)
.-.|+|+|+|+.|++++..+.. .|.+ |.++++.++.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~-v~IiE~~~~~ 68 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDIT-TRIVERKPGR 68 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCc-EEEEEcCCCC
Confidence 4569999999999998777777 4999 8889877653
No 463
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.98 E-value=0.024 Score=38.03 Aligned_cols=36 Identities=22% Similarity=0.175 Sum_probs=30.8
Q ss_pred EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
+|+|+|+ |.+|..++..+...|.+ |.++++++++.+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~-V~~l~R~~~~~~ 38 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQ-VRCLVRNLRKAS 38 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCe-EEEEEcChHHhh
Confidence 6999998 99999999998889988 888888766543
No 464
>PRK08278 short chain dehydrogenase; Provisional
Probab=95.97 E-value=0.022 Score=37.35 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=30.7
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
.+++++|.|+ |++|..++..+...|++ |++++++.+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~ 41 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGAN-IVIAAKTAE 41 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecccc
Confidence 4678999998 89999999988888998 888887654
No 465
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=95.97 E-value=0.02 Score=39.05 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=31.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~ 89 (100)
|+++-|+|.|.+|..+++.++.+|.+ |++.++
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~ 173 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDP 173 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCe-EEEECC
Confidence 88999999999999999999999999 999988
No 466
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=95.97 E-value=0.074 Score=36.22 Aligned_cols=43 Identities=12% Similarity=0.026 Sum_probs=34.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHH-HcCCcEEEEEecChhhhhhh
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAK-AYGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~-~~g~~~v~~~~~~~~~~~~~ 97 (100)
+..++++|+|+|..+...+..+. ..+.++|.+..++++|.+.+
T Consensus 127 ~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~ 170 (326)
T TIGR02992 127 EDSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEAL 170 (326)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHH
Confidence 45678999999999988777766 57888899999998886643
No 467
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.96 E-value=0.08 Score=36.10 Aligned_cols=43 Identities=16% Similarity=0.094 Sum_probs=34.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHH-cCCcEEEEEecChhhhhhh
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKA-YGARVICVCKYVGIRIFPY 97 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~-~g~~~v~~~~~~~~~~~~~ 97 (100)
+..++++|+|+|..|.+.+..... .+.++|.+.++++++.+.+
T Consensus 130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l 173 (330)
T PRK08291 130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAY 173 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence 445789999999999887766664 6777799999998887654
No 468
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.96 E-value=0.012 Score=40.63 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=28.3
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
..|+|+|+|+.|++++..+...|.+ |.+++..+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~-v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLE-VLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCE-EEEEcCCC
Confidence 3599999999999988888888998 99998765
No 469
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=95.96 E-value=0.018 Score=40.03 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=28.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHcC-CcEEEEEecChh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYG-ARVICVCKYVGI 92 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g-~~~v~~~~~~~~ 92 (100)
+|+|+|+|+.|+++...++..| .+ |.+.++.++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~-v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLN-VQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCC-EEEEecCCc
Confidence 6899999999999999988887 57 999988755
No 470
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=95.96 E-value=0.018 Score=37.90 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=28.1
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
..|+|+|+|+.|+.+...+...|.+ |++++.++
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~-V~liEk~~ 58 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLK-VAVFERKL 58 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCe-EEEEecCC
Confidence 4599999999999988888888998 88887654
No 471
>PRK08317 hypothetical protein; Provisional
Probab=95.95 E-value=0.042 Score=34.89 Aligned_cols=48 Identities=21% Similarity=0.138 Sum_probs=38.4
Q ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CcEEEEEecChhhhhhhh
Q psy16556 50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYG-ARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g-~~~v~~~~~~~~~~~~~~ 98 (100)
+...+.++++||-+|+|. |..+..+++..+ ..++++++.+++..+.++
T Consensus 13 ~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~ 61 (241)
T PRK08317 13 ELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAK 61 (241)
T ss_pred HHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Confidence 567888999999999976 788888888874 234999999988776654
No 472
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=95.95 E-value=0.019 Score=39.60 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=27.6
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
.|+|+|+||.|++++..+...|.+ |++++..
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~-V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIE-TILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc-EEEEECC
Confidence 489999999999998888888999 9999876
No 473
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=95.94 E-value=0.019 Score=44.60 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
.+++|+|+|+|+.|+.++..+...|.+ |++++..+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~-VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHP-VTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCe-EEEEeccc
Confidence 467899999999999999999999998 88887653
No 474
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.94 E-value=0.024 Score=40.54 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
+.+++|+|+|+|+.|+.++..++..|.+ |++++..+
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~~-V~v~e~~~ 176 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRAGHT-VTVFERED 176 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCe-EEEEecCC
Confidence 3578999999999999999999999998 88886543
No 475
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.94 E-value=0.024 Score=35.25 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=29.3
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
+|+|+|+|++|..+++.+...|..++..+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999998898888754
No 476
>PLN03139 formate dehydrogenase; Provisional
Probab=95.94 E-value=0.022 Score=39.75 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
.|++|.|+|.|.+|..+++.++.+|.+ |++.+++.
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~~~ 232 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDRLK 232 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECCCC
Confidence 578999999999999999999999999 88888764
No 477
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.94 E-value=0.026 Score=37.54 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=30.2
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
+|+|+|+|.+|......+...|.+ |+.+++ +++.+.++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~-V~~~~r-~~~~~~~~ 39 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRD-VTFLVR-PKRAKALR 39 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCc-eEEEec-HHHHHHHH
Confidence 689999999999888887777888 888877 66655443
No 478
>KOG0029|consensus
Probab=95.93 E-value=0.02 Score=41.30 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=30.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
.+..+|+|+|+|..|++++.-+...|.+ |++.+.+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~-V~VLEAR 47 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFD-VLVLEAR 47 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCc-eEEEecc
Confidence 3456899999999999999999999999 8888644
No 479
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.92 E-value=0.029 Score=35.95 Aligned_cols=37 Identities=24% Similarity=0.141 Sum_probs=28.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec-Chhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKY-VGIR 93 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~-~~~~ 93 (100)
.+++++|.|+ |.+|..++..+...|++ |+.+.+ ++++
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G~~-vv~~~~~~~~~ 42 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREGAR-VVVNYHQSEDA 42 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCe-EEEEcCCCHHH
Confidence 3578999998 99999999988889998 666543 4443
No 480
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.91 E-value=0.023 Score=37.52 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=29.6
Q ss_pred CCCEEEEEcC---CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 56 LGTSVLVLSA---GPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 56 ~g~~vli~G~---G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
.++.++|.|+ +++|..+++.....|++ |+.+++++
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~-Vil~~r~~ 41 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAE-LAFTYLNE 41 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEEecCH
Confidence 4789999997 48999999988889998 88887774
No 481
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.91 E-value=0.028 Score=38.53 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=31.2
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
..+|+|+|+|++|..+++.+...|..++..+|.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 47799999999999999999999998899998753
No 482
>PRK08219 short chain dehydrogenase; Provisional
Probab=95.91 E-value=0.031 Score=35.19 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=29.6
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556 57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF 95 (100)
Q Consensus 57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~ 95 (100)
.++++|.|+ |.+|..++..+... .+ |+++++++++.+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~-V~~~~r~~~~~~ 40 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HT-LLLGGRPAERLD 40 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CC-EEEEeCCHHHHH
Confidence 368999998 99999988776666 76 999988877654
No 483
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=95.90 E-value=0.024 Score=35.15 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=27.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
+|+|+|+|+.|+.++.-+...+.+ +++++.++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~-v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAK-VLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE-EEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCe-EEEEeccc
Confidence 589999999999999999999999 77775443
No 484
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.89 E-value=0.029 Score=39.49 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=29.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
++++++|.|+ |++|..+++.+...|++ |++++++
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~Ga~-vi~~~~~ 243 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDGAH-VVCLDVP 243 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 5789999998 99999999999999998 8887664
No 485
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.89 E-value=0.028 Score=38.10 Aligned_cols=41 Identities=22% Similarity=0.171 Sum_probs=34.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~ 98 (100)
..+|.|+|+|.+|......+...|.+ |.+.++++++.+.++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~-V~~~~r~~~~~~~i~ 44 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVP-VRLWARRPEFAAALA 44 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHH
Confidence 34799999999999999888888988 999999887765443
No 486
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.88 E-value=0.018 Score=40.87 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI 92 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~ 92 (100)
.+++|+|+|.|-.|.+++++++. |++ |+++|.+++
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~-v~v~D~~~~ 39 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYD-VIVYDDLKA 39 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCE-EEEECCCCC
Confidence 47899999999999999999995 988 999985543
No 487
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.88 E-value=0.016 Score=39.80 Aligned_cols=31 Identities=19% Similarity=0.361 Sum_probs=27.6
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
.|+|+|+|+.|++++..+...|.+ |.+++..
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~-v~l~E~~ 33 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIK-TTIFESK 33 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCe-EEEecCC
Confidence 489999999999998888889998 8888865
No 488
>PRK12747 short chain dehydrogenase; Provisional
Probab=95.88 E-value=0.032 Score=35.91 Aligned_cols=37 Identities=22% Similarity=0.119 Sum_probs=29.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEe-cChhh
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCK-YVGIR 93 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~-~~~~~ 93 (100)
.+++++|.|+ |++|..+++.+...|++ |++.. +++++
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~~-v~~~~~~~~~~ 41 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGAL-VAIHYGNRKEE 41 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCe-EEEEcCCCHHH
Confidence 4789999998 89999999999999998 76653 44443
No 489
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.87 E-value=0.035 Score=36.00 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEE-EEec
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVIC-VCKY 89 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~-~~~~ 89 (100)
-.+.+++|.|.|.+|..+++++...|++ |+ +.|+
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g~~-vv~v~D~ 63 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAGAK-VVAVSDS 63 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence 3579999999999999999999999999 66 5544
No 490
>KOG1399|consensus
Probab=95.87 E-value=0.016 Score=41.15 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=30.5
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
..+|.|+|+|+.|+.++.-++..|.+ +++.++++
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~-v~vfEr~~ 39 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHE-VVVFERTD 39 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCC-ceEEEecC
Confidence 57799999999999999999999999 88887764
No 491
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=95.87 E-value=0.022 Score=42.22 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=30.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89 (100)
Q Consensus 57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~ 89 (100)
+.+|||+|+|++|..+++.+...|.++++.+|.
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~ 370 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDN 370 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence 789999999999999999999999998998875
No 492
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.86 E-value=0.035 Score=35.27 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=27.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
+.++++|.|+ |.+|..++..+...|.+ |+++.++
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~~-v~~~~~~ 39 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGAD-VVVHYRS 39 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCC
Confidence 3578999998 99999999999999998 6654443
No 493
>PRK12937 short chain dehydrogenase; Provisional
Probab=95.86 E-value=0.033 Score=35.56 Aligned_cols=34 Identities=21% Similarity=0.073 Sum_probs=28.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
++++++|.|+ |++|..+++.....|.+ ++.+.++
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~~~~ 38 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGFA-VAVNYAG 38 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCC
Confidence 5789999998 99999999999999998 6665443
No 494
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.86 E-value=0.026 Score=42.41 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=31.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
..+++|+|+|+|+.|+.++..+...|.+ |++++..
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~-V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYD-VTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 4688999999999999999999999998 8888753
No 495
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.85 E-value=0.025 Score=40.65 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=29.7
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHH--cCCcEEEEEecCh
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKA--YGARVICVCKYVG 91 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~--~g~~~v~~~~~~~ 91 (100)
..+.+|+|+|+||.|+.++..+.. .|.+ |.+++..+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~-Vtv~E~~p 61 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGAR-VDIIERLP 61 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCe-EEEEecCC
Confidence 346789999999999999887764 6888 88887665
No 496
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.85 E-value=0.064 Score=37.81 Aligned_cols=64 Identities=22% Similarity=0.230 Sum_probs=47.9
Q ss_pred CCCCCChhhhhcchhHHHHHHHHHhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCc--EEEEEecC
Q psy16556 27 LPDHLTLEEGALLEPLAVGVHACKRSG-VGLGTSVLVLSAGPIGLVTILAAKAYGAR--VICVCKYV 90 (100)
Q Consensus 27 ~p~~~~~~~aa~~~~~~ta~~~~~~~~-~~~g~~vli~G~G~~G~~~~~l~~~~g~~--~v~~~~~~ 90 (100)
+|-.=+..+...+..++..+++++..+ --...+|+++|+|..|..++.+.+..|.+ +++.+|+.
T Consensus 168 IPvFhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~ 234 (432)
T COG0281 168 IPVFHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK 234 (432)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence 454445556666666666777776544 34567888999999999999999999987 79999864
No 497
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.85 E-value=0.028 Score=38.72 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556 56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91 (100)
Q Consensus 56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~ 91 (100)
.+.+|+|+|+|++|..+++.+...|..++..+|.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 357899999999999999999999999899887654
No 498
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.85 E-value=0.035 Score=35.83 Aligned_cols=34 Identities=24% Similarity=0.193 Sum_probs=28.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556 56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV 90 (100)
Q Consensus 56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~ 90 (100)
.+++++|.|+ |++|..+++.+...|++ |+.+.++
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~~-v~~~~~~ 40 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGAK-VAVLYNS 40 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 4689999998 99999999998889998 6665443
No 499
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.85 E-value=0.067 Score=36.78 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=34.7
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556 53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR 93 (100)
Q Consensus 53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~ 93 (100)
+--.++++||+|+|-+|..++..+...|.++++++.++.++
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~ 210 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT 210 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence 33468999999999999999999999998878888777543
No 500
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.85 E-value=0.074 Score=35.17 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=29.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556 55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVC 87 (100)
Q Consensus 55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~ 87 (100)
-+|.+|+|.|.|.+|+.+++++..+|++ |+++
T Consensus 36 l~g~~vaIqGfGnVG~~~a~~L~e~Gak-vvaV 67 (254)
T cd05313 36 LKGKRVAISGSGNVAQYAAEKLLELGAK-VVTL 67 (254)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEE
Confidence 4689999999999999999999999999 7755
Done!