RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16556
(100 letters)
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 140 bits (356), Expect = 2e-42
Identities = 62/86 (72%), Positives = 78/86 (90%)
Query: 1 MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
+ FCATPP GNL+++Y HAADFC+KLPD+++LEEGALLEPL+VGVHAC+R+GV LGT+V
Sbjct: 113 LTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGVHACRRAGVQLGTTV 172
Query: 61 LVLSAGPIGLVTILAAKAYGARVICV 86
LV+ AGPIGLV++LAAKAYGA V+C
Sbjct: 173 LVIGAGPIGLVSVLAAKAYGAFVVCT 198
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 140 bits (355), Expect = 2e-42
Identities = 57/87 (65%), Positives = 68/87 (78%)
Query: 1 MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
+ FCATPP GNL +FYKH A FCYKLPD++T EEGAL+EPL+VG+HAC+R GV LG V
Sbjct: 116 IFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKV 175
Query: 61 LVLSAGPIGLVTILAAKAYGARVICVC 87
LV AGPIG+VT+L AKA GA + V
Sbjct: 176 LVCGAGPIGMVTLLVAKAMGAAQVVVT 202
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 132 bits (334), Expect = 4e-39
Identities = 38/87 (43%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
Query: 1 MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
+ F +TPP G L ++ H A +C+K+ + ++ E GA+LEPL+V + +R+GV LG V
Sbjct: 125 VDFLSTPPVPGLLRRYVNHPAVWCHKIGN-MSYENGAMLEPLSVALAGLQRAGVRLGDPV 183
Query: 61 LVLSAGPIGLVTILAAKAYGARVICVC 87
L+ AGPIGL+T+L AKA GA + +
Sbjct: 184 LICGAGPIGLITMLCAKAAGACPLVIT 210
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 126 bits (319), Expect = 4e-37
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 1 MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
G +++ A+ + P L E A+LEP VH G SV
Sbjct: 110 TQILGVDRD-GGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGVSGKSV 168
Query: 61 LVLSAGPIGLVTILAAKAYGARVICV 86
L+ AGPIGL+ + +A GA I V
Sbjct: 169 LITGAGPIGLMAAMVVRASGAGPILV 194
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 123 bits (310), Expect = 8e-36
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 1 MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
F + G +++ + LP + +E+GA +EP+ VG+HA + +V
Sbjct: 106 YDFIGSRRD-GGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCENKNV 164
Query: 61 LVLSAGPIGLVTILAAKAYGARVICV 86
+++ AG IGL+ I A A GA+ +
Sbjct: 165 IIIGAGTIGLLAIQCAVALGAKSVTA 190
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 119 bits (300), Expect = 5e-34
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 1 MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
+ G +++ +++P L GA EPLA +H SG+ G++V
Sbjct: 128 LRAIGIHRD-GGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCLHGVDLSGIKAGSTV 186
Query: 61 LVLSAGPIGLVTILAAKAYGARVICV 86
+L G IGL+T+ A+ GA + +
Sbjct: 187 AILGGGVIGLLTVQLARLAGATTVIL 212
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 110 bits (278), Expect = 6e-31
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 1 MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
G +++ A +K P + E L EPL V + G SV
Sbjct: 114 TKIFGVDTD-GVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPI-SGKSV 171
Query: 61 LVLSAGPIGLVTILAAKAYGARVICV 86
L+ AGP+GL+ I AKA GA + V
Sbjct: 172 LITGAGPLGLLGIAVAKASGAYPVIV 197
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 103 bits (259), Expect = 3e-28
Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 1 MVFCAT--PPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGT 58
++ HG +S+F+ + ++P E G L+EP+++ A + +
Sbjct: 110 GMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA-ELGFLIEPISITEKALEHAYASRSA 168
Query: 59 ------SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98
S VL G +GL+T+ K +
Sbjct: 169 FDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPT 214
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 94.0 bits (234), Expect = 2e-24
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 1 MVFCATPPHHGNLSQFYKHAADFCYKLPDH-------LTLEEGALLEPLAVGVHAC--KR 51
+ G +++ K A + + L + G+L+EP +V +A +
Sbjct: 150 LNELGFN-VDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRG 208
Query: 52 SGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV 86
G+ G +V++L GPIGL + K GA + +
Sbjct: 209 GGIRPGDNVVILGGGPIGLAAVAILKHAGASKVIL 243
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 92.1 bits (229), Expect = 7e-24
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 15/97 (15%)
Query: 4 CATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKR------------ 51
G + +++ + K+P + + G L +PLA + +
Sbjct: 115 AGIHKMDGFMREWWYDDPKYLVKIPKSIE-DIGILAQPLADIEKSIEEILEVQKRVPVWT 173
Query: 52 --SGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV 86
G VLV+ GPIG++ L + YG V
Sbjct: 174 CDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMA 210
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 58.4 bits (142), Expect = 9e-12
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 19 HAADFCYKLPDHLTLEEGALLEP-LAVGVHACKRSG-VGLGTSVLVLSAGPIGLVTILAA 76
K+ + L+ A+ A HA G +V++ AGP+GL ++ A
Sbjct: 156 DPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIA 215
Query: 77 KAYGARVICVCKYVGIRIFPYK 98
++ GA + + I P +
Sbjct: 216 RSLGAENV-----IVIAGSPNR 232
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 57.2 bits (139), Expect = 2e-11
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 21 ADF-CYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKA 78
AD LP + LE ++ + + G H + + + LG +V V+ GP+GL+++ A
Sbjct: 129 ADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGANH 188
Query: 79 YGA-RVICV 86
GA R+ V
Sbjct: 189 LGAGRIFAV 197
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 51.5 bits (124), Expect = 3e-09
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 8 PHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGV--HA-CKRSGVGLGTSVLVLS 64
H G LS++ + P L E + L P A A ++ + G V+V
Sbjct: 139 AHPGVLSEYVVLPEGWFVAAPKSLDAAEASTL-PCAGLTAWFALVEKGHLRAGDRVVVQG 197
Query: 65 AGPIGLVTILAAKAYGARVI 84
G + L + AKA GA VI
Sbjct: 198 TGGVALFGLQIAKATGAEVI 217
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 50.7 bits (122), Expect = 4e-09
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 21 ADF-CYKLPDHLTLEEG-----ALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTIL 74
ADF KLPD E L + L G H +GVG G++V V AGP+GL
Sbjct: 144 ADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAA 203
Query: 75 AAKAYGA-RVICV 86
+A+ GA VI
Sbjct: 204 SARLLGAAVVIVG 216
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 49.4 bits (118), Expect = 1e-08
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 7 PPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVG-----VHACKRSGVGLGTSVL 61
+ G L++ ++ PDHL+ EE A L + + +G+ G +VL
Sbjct: 175 ETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAP-GLVNSTAYRQLVSRNGAGMKQGDNVL 233
Query: 62 VLSA-GPIGLVTILAAKAYGARVICV 86
+ A G +G A A GA ICV
Sbjct: 234 IWGASGGLGSYATQFALAGGANPICV 259
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 48.4 bits (116), Expect = 3e-08
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 21 ADF-CYKLPDHLT---LEEGALL--EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTIL 74
AD+ K D + L + L G H C +GV G+ V + AGP+G
Sbjct: 144 ADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGCVSAGVKPGSHVYIAGAGPVGRCAAA 203
Query: 75 AAKAYGA-RVICV 86
A+ GA VI
Sbjct: 204 GARLLGAACVIVG 216
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 47.9 bits (114), Expect = 6e-08
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 7 PPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVG-----VHACKRSGVGLGTSVL 61
+ G L+++ A P HLT EE A+ PL G + + + + + G VL
Sbjct: 167 ETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVS-PLCAGTAYRMLVSDRGAQMKQGDIVL 225
Query: 62 VLSA-GPIGLVTILAAKAYGARVICV 86
+ A G +G I K G + V
Sbjct: 226 IWGASGGLGSYAIQFVKNGGGIPVAV 251
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 46.0 bits (110), Expect = 2e-07
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 4 CATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGA-LLEPLAVGVHACKRSGVGLGTSVLV 62
A P G L++ LP+ L+ EE A A KR+ G VLV
Sbjct: 73 AALVPQ-GGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQARPGEKVLV 131
Query: 63 L-SAGPIGLVTILAAKAYGARVICVC 87
+AG +G + A+A G RV+
Sbjct: 132 QAAAGALGTAAVQVARAMGLRVLAAA 157
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 45.7 bits (109), Expect = 3e-07
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 8 PHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGV--HA-CKRSGVGLGTSVLVL- 63
HG +++ P +L+ EE A + PL + GV G VLV+
Sbjct: 116 HRHGTYAEYVVLPEANLAPKPKNLSFEEAAAI-PLTFLTAWQMVVDKLGVRPGDDVLVMA 174
Query: 64 SAGPIGLVTILAAKAYGARVI 84
+ + + I AK +GARVI
Sbjct: 175 AGSGVSVAAIQIAKLFGARVI 195
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 45.2 bits (108), Expect = 4e-07
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 2 VFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVG-VHAC--KRSGVGLGT 58
VF ++ G +++ A YKLP+ L ++GA + + + + V G
Sbjct: 115 VFTSSTIS-GGYAEYALAADHTVYKLPEKLDFKQGAAI-GIPYFTAYRALIHSACVKAGE 172
Query: 59 SVLVL-SAGPIGLVTILAAKAYGARVI 84
SVLV ++G +GL A+AYG +++
Sbjct: 173 SVLVHGASGGVGLAACQIARAYGLKIL 199
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 43.8 bits (104), Expect = 1e-06
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 13/91 (14%)
Query: 4 CATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGV------HACKRSG-VGL 56
G + + ++P + L+ A +GV +
Sbjct: 113 IPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAA-----TLGVNPCTAYRMLMDFEQLQP 167
Query: 57 GTSVLVLSA-GPIGLVTILAAKAYGARVICV 86
G SV+ ++ +G I A A G R I V
Sbjct: 168 GDSVIQNASNSGVGQAVIQIAAALGLRTINV 198
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 43.7 bits (104), Expect = 1e-06
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 21 ADFCYKLPDHLTLEEGALLEPLAVG-VHAC--KRSGVGLGTSVLVL-SAGPIGLVTILAA 76
P L E L ++ +R + G +VLVL +AG IG I A
Sbjct: 122 PSNILPTPPQLDDAEAVAL-IANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIA 180
Query: 77 KAYGARVICV 86
K GA+VI V
Sbjct: 181 KGMGAKVIAV 190
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann
fold, NAD binding, oxidoreductase; HET: NAP; 1.74A
{Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Length = 371
Score = 42.0 bits (99), Expect = 6e-06
Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 17/96 (17%)
Query: 8 PHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAV---------------GVHACKRS 52
P G SQ+ K+P L+ E+ A L P + A +
Sbjct: 102 PDQGAFSQYTVTRGRVWAKIPKGLSFEQAAAL-PAGISTAGLAMKLLGLPLPSPSADQPP 160
Query: 53 GVGLGTSVLVLS-AGPIGLVTILAAKAYGARVICVC 87
VLV + VT+ + G I C
Sbjct: 161 THSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC 196
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 40.7 bits (96), Expect = 1e-05
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 21 ADFCYKLPDHLTLEEGA-LLEPLAVGVHACKRSGVGLGTSVLVL-SAGPIGLVTILAAKA 78
A C L D + E+GA ++ + + ++ A + + I AK
Sbjct: 128 AAACIPLLDTVRDEDGAAMIVNPLTAIAMFDIVKQEGEKAFVMTAGASQLCKLIIGLAKE 187
Query: 79 YGARVI 84
G R I
Sbjct: 188 EGFRPI 193
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 39.9 bits (94), Expect = 3e-05
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 21 ADFCYKLPDHLTLEEGALLEPLAVG-VHAC--KRSGVGLGTSVLVLS-AGPIGLVTILAA 76
+F YK+PD ++ E A P+ + + + + G SVLV S G +G
Sbjct: 105 VEFVYKIPDDMSFSEAAAF-PMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLC 163
Query: 77 KAYGARVI 84
+
Sbjct: 164 STVPNVTV 171
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 39.9 bits (94), Expect = 3e-05
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLA-VGV---HACKRSGVGLGTSVLVLS 64
G +++ L E A PL G+ A +++ + ++LV+
Sbjct: 122 FDGAYAEYVIVPHYKYMYKLRRLNAVEAA---PLTCSGITTYRAVRKASLDPTKTLLVVG 178
Query: 65 A-GPIGLVTILAAKA-YGARVICV 86
A G +G + + AKA GA +I V
Sbjct: 179 AGGGLGTMAVQIAKAVSGATIIGV 202
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 39.5 bits (93), Expect = 4e-05
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 21 ADFCYKLPDHLTLEEGA-LLEPLAVGVHACKRSG-VGLGTSVLVL-SAGPIGLVTILAAK 77
ADF +PD + A + C + + +LV IG + ++
Sbjct: 107 ADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQ 166
Query: 78 AYGARVICV 86
R+I V
Sbjct: 167 ILNFRLIAV 175
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 39.3 bits (92), Expect = 5e-05
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 2 VFCATPPHH-GNLSQFYKHAADFCYKLPDHLTLEEGALLEPL-------AVGVHACKRSG 53
V+ A PP G LS+F + + P LT + A L P A+
Sbjct: 122 VWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASL-PYVALTAWSAINKVGGLNDK 180
Query: 54 VGLGTSVLVL-SAGPIGLVTILAAKAYGARVICVC 87
G VL+L ++G +G I KA+ A V VC
Sbjct: 181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC 215
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 38.8 bits (90), Expect = 7e-05
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 21 ADFCYKLPDHLTLEEGA--LLEPLAVGVHACKRSGVGLGTSVLVL-SAGPIGLVTILAAK 77
AD C LP+ T +GA + PL + + + ++++ +A +G +
Sbjct: 135 ADQCLVLPEGATPADGASSFVNPLTA-LGMVETMRLEGHSALVHTAAASNLGQMLNQICL 193
Query: 78 AYGARVICVC 87
G +++ +
Sbjct: 194 KDGIKLVNIV 203
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 38.4 bits (90), Expect = 1e-04
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLA-VGV---HACKRSGVGL--GTSVLV 62
G ++F + + KLP ++ E+ + PLA G+ A K++ L G V +
Sbjct: 133 IDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAI 192
Query: 63 LSAGPIGLVTILAAKAYG-ARVICV 86
+ G +G + + K A VI +
Sbjct: 193 VGVGGLGHIAVQLLKVMTPATVIAL 217
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Length = 321
Score = 38.3 bits (90), Expect = 1e-04
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVG--VHACKRSGVGLGTSV 60
P H +++ + D + + L+ + A L P A + A ++ V G V
Sbjct: 98 IAGFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASL-PTAGLTALQALNQAEVKQGDVV 156
Query: 61 LVL-SAGPIGLVTILAAKAYGARVICVC 87
L+ AG +G + I AK G VI
Sbjct: 157 LIHAGAGGVGHLAIQLAKQKGTTVITTA 184
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics,
PSI, protein STRU initiative; 2.66A {Mycobacterium
tuberculosis} SCOP: c.2.1.1
Length = 198
Score = 36.8 bits (86), Expect = 3e-04
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 21 ADFCYKLPDHLTLEEGALLEPLAVG--VHA-CKRSGVGLGTSVLVLSA-GPIGLVTILAA 76
+D +PD L E A +A H+ C+ + G VL+ SA G +G+ + A
Sbjct: 1 SDLVVPIPDTLADNEAATF-GVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIA 59
Query: 77 KAYGARVIC 85
K GAR+
Sbjct: 60 KMIGARIYT 68
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 37.0 bits (86), Expect = 4e-04
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 21 ADFCYKLPDHLTLEEGALLEPLAVG--VHA-CKRSGVGLGTSVLVLSA-GPIGLVTILAA 76
++P + A + P+ +A +G+ G S+LV SA G +G+ I A
Sbjct: 308 HRMVTRIPAGWSFARAASV-PIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLA 366
Query: 77 KAYGARVICVC 87
+ GA V
Sbjct: 367 RHLGAEVYATA 377
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 36.3 bits (83), Expect = 6e-04
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 57 GTSVLVLSAGPIGLVTILAAKAYGARVICV 86
G + + GP+ L IL + YG RV V
Sbjct: 123 GERAVFIGGGPLPLTGILLSHVYGMRVNVV 152
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 35.6 bits (83), Expect = 0.001
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 8 PHHGNLSQFYKHAADFCYKLPDHLTLEEGA-LL-------EPLAVGVHACKRSGVGLGTS 59
PH G S ++ + + LE+ A LL PL K S V GT
Sbjct: 127 PHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPL-------KFSKVTKGTK 179
Query: 60 VLVLSAGPIGLVTILAAKAYGARV 83
V V G +G + + A A GA V
Sbjct: 180 VGVAGFGGLGSMAVKYAVAMGAEV 203
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 34.9 bits (81), Expect = 0.001
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 21 ADFCYKLPDHLTLEEGALLEPLAVGV---HACKRSGVGL--GTSVLVLSAGPIGLVTILA 75
+ L A L G+ HA R L G++ +V+ G +G V I
Sbjct: 133 SARHLVPIGDLDPVAAAPL--TDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQI 190
Query: 76 AKAYGA-RVICV 86
+A A RVI V
Sbjct: 191 LRAVSAARVIAV 202
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in
PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent,
oxidoreductase; HET: NAP; 3.00A {Saccharomyces
cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Length = 360
Score = 34.8 bits (81), Expect = 0.002
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 22 DFCYKLPDHLTLEEGA-LL-------EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTI 73
F +P+++ A LL PL R+G G G V ++ G IG +
Sbjct: 144 HFVVPIPENIPSHLAAPLLCGGLTVYSPL-------VRNGCGPGKKVGIVGLGGIGSMGT 196
Query: 74 LAAKAYGARV 83
L +KA GA
Sbjct: 197 LISKAMGAET 206
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 34.1 bits (79), Expect = 0.003
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 2 VFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGA--LLEPLAVGVHACKRSGVGLGTS 59
V+ + G S + AD LP ++ E+ A L+ L V K +
Sbjct: 86 VYAQSAL--GAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQ 143
Query: 60 VLVLS-AGPIGLVTILAAKAYGARVI 84
L + AG +GL+ AKA GA++I
Sbjct: 144 FLFHAAAGGVGLIACQWAKALGAKLI 169
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 34.1 bits (79), Expect = 0.003
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGV---HACKRSGVGLGTSVLVLSA 65
G +++ + AAD+ K+PD+L+ EE A + GV A K +G G V +
Sbjct: 116 VDGGYAEYCRAAADYVVKIPDNLSFEEAAPI--FCAGVTTYKALKVTGAKPGEWVAIYGI 173
Query: 66 GPIGLVTILAAKAYGARVI 84
G +G V + AKA G V+
Sbjct: 174 GGLGHVAVQYAKAMGLNVV 192
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 33.8 bits (78), Expect = 0.004
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 21 ADFCYKLPDHLTLEEGALLEPLAVGVHACKRSG-VGLGTSVLVLSA-GPIGLVTILAAKA 78
A +P E LL + K G + G VLV +A G G + +K
Sbjct: 128 ASIATPVPSVKP-EYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKK 186
Query: 79 YGARVICVC 87
VI C
Sbjct: 187 AKCHVIGTC 195
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 33.7 bits (78), Expect = 0.005
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGV---HACKRSGVGLGTSVLVLSA 65
+G ++ ++ LPD + E A + L GV K + G V++
Sbjct: 118 VNGGYGEYVVADPNYVGLLPDKVGFVEIAPI--LCAGVTVYKGLKVTDTRPGQWVVISGI 175
Query: 66 GPIGLVTILAAKAYGARVI 84
G +G V + A+A G RV
Sbjct: 176 GGLGHVAVQYARAMGLRVA 194
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 33.3 bits (77), Expect = 0.005
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 2 VF-CATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGV--HACKRSGVGLGT 58
V + HG+ ++F D LPD+L+ E A L P + A ++ +
Sbjct: 86 VAYHTSLKRHGSFAEFTVLNTDRVMTLPDNLSFERAAAL-PCPLLTAWQAFEKIPLTKQR 144
Query: 59 SVLVLSAGPIGLVTILAAKAYGARVICVC 87
VL++ G + + G V V
Sbjct: 145 EVLIVGFGAVNNLLTQMLNNAGYVVDLVS 173
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 33.3 bits (77), Expect = 0.006
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 21 ADFCYKLPDHLTLEEGALLEPLAVGVHAC--KRSGVGLGTSVLVLS-AGPIGLVTILAAK 77
A P + A L V A + +G+ G SVL+ IG I A+
Sbjct: 130 AGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLAR 189
Query: 78 AYGARVI 84
A+GA V
Sbjct: 190 AFGAEVY 196
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.009
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 11/59 (18%)
Query: 10 HGNLSQFYKHAADFCYKLPDHLTLEEGAL-LEPLA-VGVHACKRSGV-GLGTSVLVLSA 65
+ + F K+ +L +L L + L L P V + GV G G + + L
Sbjct: 120 YNDNQVFAKY---NVSRLQPYLKLRQALLELRPAKNVLID-----GVLGSGKTWVALDV 170
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 33.0 bits (76), Expect = 0.009
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 21 ADFCYKLPDHLTLEEGALLEPLAVGVHAC--KRSGVGLGTSVLVLS-AGPIGLVTILAAK 77
+P+ LTL + A + + V G VL+ + +G I +
Sbjct: 125 EGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTR 184
Query: 78 AYGARVI 84
GA +
Sbjct: 185 MAGAIPL 191
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET:
NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 32.6 bits (75), Expect = 0.010
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 21 ADFCYKLPDHLTLEEGA--LLEPLAVGVHACKRSGVGLGTSVLVLS-AGPIGLVTILAAK 77
KL D ++ E+ A +L+ L V + V G +L + AG +G + AK
Sbjct: 103 EANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAK 162
Query: 78 AYGARVI 84
A GA++I
Sbjct: 163 ALGAKLI 169
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 32.7 bits (75), Expect = 0.010
Identities = 12/78 (15%), Positives = 20/78 (25%), Gaps = 14/78 (17%)
Query: 18 KHAADFCYKLPDHLTLEEGALLEPLAVGV------HACK-RSGVGLGTSVLVLSA--GPI 68
A P+ LT+ +GA + V + G + + +
Sbjct: 126 NPAQSKANGKPNGLTINQGA-----TISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAV 180
Query: 69 GLVTILAAKAYGARVICV 86
G K I V
Sbjct: 181 GKYASQIGKLLNFNSISV 198
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics,
protein structure initiative, MCSG; HET: DTY; 2.80A
{Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Length = 328
Score = 32.7 bits (75), Expect = 0.011
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLE----PLAVGVHACKRSGVGLGTSVLVLS 64
H G S++ + ++ LP LTL+E + A+ +H + G+ ++++
Sbjct: 97 HFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVT 156
Query: 65 AGP--IGLVTILAAKAYGARVICV 86
+G + + G V
Sbjct: 157 GATGGVGSLAVSMLAKRGYTVEAS 180
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II,
alcohol dehydrogenase superf structural genomics; 1.96A
{Novosphingobium aromaticivorans}
Length = 343
Score = 32.6 bits (75), Expect = 0.012
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 21 ADFCYKLPDHLTLEEGALLEPLAV-----GVHACKRSGVGLGTSVLVLS-AGPIGLVTIL 74
A P LT+ + ++L PL G+ R+ V G +VL+ G +G V I
Sbjct: 113 ARLLASKPAALTMRQASVL-PLVFITAWEGLV--DRAQVQDGQTVLIQGGGGGVGHVAIQ 169
Query: 75 AAKAYGARVICVC 87
A A GARV
Sbjct: 170 IALARGARVFATA 182
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 32.2 bits (74), Expect = 0.018
Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 16/87 (18%)
Query: 6 TPPHHGNLSQFYKHAADFCYKLPDHLTLEEGA--LL-------EPLAVGVHACKRSGVGL 56
G SQ + ++ LL PL + G
Sbjct: 142 PGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPL-------RHWQAGP 194
Query: 57 GTSVLVLSAGPIGLVTILAAKAYGARV 83
G V V+ G +G + I A A GA V
Sbjct: 195 GKKVGVVGIGGLGHMGIKLAHAMGAHV 221
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 31.7 bits (73), Expect = 0.022
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 53 GVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVICV 86
V +S + AG +GL +LAAK GA +I V
Sbjct: 187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAV 221
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for
struc genomics of infectious diseases, PSI, protein
structure INI; HET: MSE NAP; 1.90A {Salmonella enterica
subsp} PDB: 1o89_A 1o8c_A*
Length = 324
Score = 31.9 bits (73), Expect = 0.022
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPL----AVGVHACKRSGVGLGTSVLVLS 64
H G L++ + D+ LP L+ ++ + V A + +G+ +V++
Sbjct: 94 HWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVT 153
Query: 65 AGP--IGLVTILAAKAYGARVICV 86
+G + G +V V
Sbjct: 154 GASGGVGSTAVALLHKLGYQVAAV 177
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 31.6 bits (71), Expect = 0.025
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK 88
++ T LV+ AGP GL + GARV+ V K
Sbjct: 85 QQGQACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEK 123
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 31.4 bits (72), Expect = 0.026
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 16/85 (18%)
Query: 8 PHHGNLSQFYKHAADFCYKLPDHLTLEEGA-LL-------EPLAVGVHACKRSGVGL-GT 58
+G S + + PD++ L+ GA LL PL K G+ G
Sbjct: 137 ITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPL-------KYFGLDEPGK 189
Query: 59 SVLVLSAGPIGLVTILAAKAYGARV 83
+ ++ G +G V + AKA+G++V
Sbjct: 190 HIGIVGLGGLGHVAVKFAKAFGSKV 214
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 31.4 bits (72), Expect = 0.030
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 16/86 (18%)
Query: 8 PHHGNLSQFYKHAADFCYKLPDHLTLEEGA-LL-------EPLAVGVHACKRSGVGL-GT 58
P G ++ F K+P+ + +E+ A LL PL G+ G
Sbjct: 130 PTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPL-------SHFGLKQPGL 182
Query: 59 SVLVLSAGPIGLVTILAAKAYGARVI 84
+L G +G + + AKA G V
Sbjct: 183 RGGILGLGGVGHMGVKIAKAMGHHVT 208
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 31.0 bits (71), Expect = 0.034
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAV-GV---HACKRSGVGL----GTSV 60
+G S++ + + L+ E A PLA G A +++ + V
Sbjct: 118 TNGGFSEYMLVKSSRWLVKLNSLSPVEAA---PLADAGTTSMGAIRQALPFISKFAEPVV 174
Query: 61 LVLSAGPIGLVTILAAKA--YGARVICV 86
+V G + + TI KA ++ +
Sbjct: 175 IVNGIGGLAVYTIQILKALMKNITIVGI 202
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 31.1 bits (70), Expect = 0.038
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARVICV 86
VLV+ AGP GL A GARV+ +
Sbjct: 131 VLVVGAGPAGLAAAREASRSGARVMLL 157
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural
genomics, protein structure initiative, PSI; 2.70A
{Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Length = 330
Score = 30.4 bits (69), Expect = 0.061
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAV----GVHACKRSGVGLGTSVLVLS 64
G LS++ D+ LP +L+L+E + VH +++G+ ++++
Sbjct: 98 RDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVT 157
Query: 65 AGP--IGLVTILAAKAYGARVICV 86
+G + + G V+
Sbjct: 158 GATGGVGGIAVSMLNKRGYDVVAS 181
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 30.3 bits (68), Expect = 0.066
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 35 EGALLEPLAVGVHACKRSGVGL-GTSVLVLSAGPIGLVTILAAKAYGARVICV 86
EG ++ A + + + G +V VL G +G+ A GA+V
Sbjct: 139 EGTIMM-------AIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVG 184
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 30.2 bits (69), Expect = 0.071
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK 99
A + + G+ V G +GL I+ K GA I +G+ I K
Sbjct: 182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRI-----IGVDINKDKF 228
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase,
oxidoreductase; 1.30A {Burkholderia SP}
Length = 333
Score = 29.9 bits (68), Expect = 0.094
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 21 ADFCYKLPDHLTLEEGALLEPLAVG--VHACKRS--GVGLGTSVLVLS-AGPIGLVTILA 75
A+ K+P L L++ L + G V G VL+ + AG +G + +
Sbjct: 106 AEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPW 165
Query: 76 AKAYGARVI 84
A+ GA VI
Sbjct: 166 ARHLGATVI 174
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 29.9 bits (68), Expect = 0.097
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK 99
A K + V G++ V G +GL I+ KA GA I +G+ I K
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARI-----IGVDINKDKF 229
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 30.0 bits (68), Expect = 0.097
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 57 GTSVLVLSAGPIGLVTILAAKAYGARVICV 86
G ++L+L G IG K +G +V+ V
Sbjct: 140 GRTLLILGTGSIGQHIAHTGKHFGMKVLGV 169
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 30.2 bits (68), Expect = 0.099
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 21 ADFCYKLPDHLTLEEGALLEPLAVGV--HA-CKRSGVGLGTSVLVLSA-GPIGLVTILAA 76
+++P TLEE A + P+ ++ R + G SVL+ S G +G I A
Sbjct: 1630 QHATWEVPSTWTLEEAASV-PIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIA 1688
Query: 77 KAYGARV 83
+ G RV
Sbjct: 1689 LSRGCRV 1695
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 29.9 bits (68), Expect = 0.11
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 2 VF-CATPPHHGNLSQFYKHAAD--FCYKLPDHLTLEEGALLEPLAVG---------VHAC 49
V+ +P +G+ +++ + K P +++ E+ L PL
Sbjct: 87 VYYSGSPDQNGSNAEY--QLINERLVAKAPKNISAEQAVSL-PLTGITAYETLFDVFGIS 143
Query: 50 KRSGVGLGTSVLVL-SAGPIGLVTILAAKAYGARVI 84
+ G ++L++ AG +G + AKAYG RVI
Sbjct: 144 RNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVI 179
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 29.5 bits (67), Expect = 0.12
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98
A + V G++ V G +GL ++ + GA+ I + + + P K
Sbjct: 184 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRI-----IAVDLNPDK 229
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone
oxidoreductases, NADPH, cytoplasm and oxidoreductase;
HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Length = 334
Score = 29.5 bits (67), Expect = 0.13
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 19 HAADFCYKLPDHLTLEE-----GALLEPLAVGVHACKRSG-VGLGTSVLVLS-AGPIGLV 71
+ KLP + EE LL+ L + + V G VL+ + AG +GL+
Sbjct: 106 SSQGPVMKLPKGTSDEELKLYAAGLLQVLTA-LSFTNEAYHVKKGDYVLLFAAAGGVGLI 164
Query: 72 TILAAKAYGARVI 84
K GA I
Sbjct: 165 LNQLLKMKGAHTI 177
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 29.5 bits (67), Expect = 0.15
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98
A + V G++ V G +GL I+ K GA I + I I K
Sbjct: 187 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRI-----IAIDINGEK 232
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 29.1 bits (66), Expect = 0.18
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98
A + V G++ V G +G I+ KA GA I +G+ K
Sbjct: 183 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRI-----IGVGTHKDK 228
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 29.3 bits (66), Expect = 0.18
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARVICVCK 88
V+++ +G GL ++A+ GA+VI + K
Sbjct: 129 VVIIGSGGAGLAAAVSARDAGAKVILLEK 157
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 29.1 bits (66), Expect = 0.18
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGV---HACKRSGVGLGTSVLVLSA 65
H G+ Q+ A +P L + A + L G+ A K + + G V +
Sbjct: 121 HDGSFQQYATADAVQAAHIPQGTDLAQVAPI--LCAGITVYKALKSANLMAGHWVAIS-- 176
Query: 66 GPIGLVTILA---AKAYGARVI 84
G G + LA AKA G RV+
Sbjct: 177 GAAGGLGSLAVQYAKAMGYRVL 198
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 28.2 bits (63), Expect = 0.38
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 47 HACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV 86
V G VL + G IG + A A RV +
Sbjct: 52 EMIALLDVRSGDRVLDVGCG-IGKPAVRLATARDVRVTGI 90
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 28.1 bits (63), Expect = 0.39
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARVICVC 87
+L+L AG L AAK G I
Sbjct: 10 LLILGAGRGQLGLYKAAKELGIHTIAGT 37
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 28.2 bits (63), Expect = 0.42
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 47 HACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV 86
+ + VL + +G +G + + YGA +
Sbjct: 46 KILSDIELNENSKVLDIGSG-LGGGCMYINEKYGAHTHGI 84
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 28.0 bits (63), Expect = 0.46
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 57 GTSVLVLSAGPIGLVTILAAKAYGARVICV 86
SV ++ AG +G + +A+G + C
Sbjct: 139 EFSVGIMGAGVLGAKVAESLQAWGFPLRCW 168
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 0.62
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 58 TSVLVLSAGP-----IGLVTILAAKAYGARVI 84
T +L GP +G++T G RVI
Sbjct: 499 THILDF--GPGGASGLGVLTHRNKDGTGVRVI 528
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase,
BFR250, NESG, structural genomics, PSI-2; HET: SAM;
1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A
3t7s_A* 3t7r_A* 3t7t_A*
Length = 267
Score = 27.2 bits (60), Expect = 0.76
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 57 GTSVLVLSAGPIGLVTILAAKAYGARVICV 86
+ + + G G T++ A +V +
Sbjct: 47 KSLIADIGCGT-GGQTMVLAGHVTGQVTGL 75
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 27.1 bits (60), Expect = 0.82
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
Query: 5 ATPPHH----GNLSQFYKHAADFC-YKLPDHLTLEEGALLEPLAVG----VHACKRSGVG 55
TP H G + + ++ A KL ++ A+ + + A + +
Sbjct: 95 RTPAHCVIFSGISNAYLENIAAQAKRKLVKLFERDDIAIYNSIPTVEGTIMLAIQHTDYT 154
Query: 56 L-GTSVLVLSAGPIGLVTILAAKAYGARV 83
+ G+ V VL G G+ A GA V
Sbjct: 155 IHGSQVAVLGLGRTGMTIARTFAALGANV 183
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 27.2 bits (61), Expect = 0.88
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 57 GTSVLVLSAGPIGLVTILAAKAYGARVI 84
G +L+ G IG A A G VI
Sbjct: 137 GQQLLIYGTGQIGQSLAAKASALGMHVI 164
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas
aeruginosa} PDB: 1zx9_A*
Length = 467
Score = 27.1 bits (61), Expect = 1.1
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARVICV 86
V V+ +G + L A GA+V +
Sbjct: 7 VAVIGSGGAAMAAALKAVEQGAQVTLI 33
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Length = 405
Score = 26.9 bits (60), Expect = 1.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARV 83
+ V+ AG GL I A+ GA V
Sbjct: 193 IFVMGAGVAGLQAIATARRLGAVV 216
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 26.9 bits (59), Expect = 1.1
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARVICV 86
V ++ GP G+ L + V +
Sbjct: 111 VAIIGGGPAGIGAALELQQ-YLTVALI 136
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center
for structural genomics of infec diseases, NADE, CSGI;
2.74A {Campylobacter jejuni}
Length = 249
Score = 26.7 bits (60), Expect = 1.3
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 46 VHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV 86
V + GV LG S + SA LV L +A V +
Sbjct: 21 VKNSQSQGVVLGLSGGIDSA----LVATLCKRALKENVFAL 57
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis,
sleeping sickness, flavoPro redox-active center; HET:
FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A*
2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A*
1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Length = 495
Score = 26.8 bits (60), Expect = 1.3
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 61 LVLSAGPIGLVT-ILAAKAYGARVICV 86
+V+ AG GL AA YG RV V
Sbjct: 11 VVIGAGSGGLEAGWNAATLYGKRVAVV 37
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1;
transhydrogenase domain I, oxidoreductase; 1.81A
{Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB:
1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A*
2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Length = 384
Score = 26.5 bits (59), Expect = 1.3
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARV 83
VLV G GL I AK GA V
Sbjct: 175 VLVFGVGVAGLQAIATAKRLGAVV 198
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain,
rossmann fold, oxidoreductase; 1.90A {Escherichia coli}
PDB: 1x14_A* 1x15_A* 2bru_A*
Length = 401
Score = 26.5 bits (59), Expect = 1.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARV 83
V+V+ AG GL I AA + GA V
Sbjct: 175 VMVIGAGVAGLAAIGAANSLGAIV 198
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 26.4 bits (59), Expect = 1.5
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARVICV 86
V ++ G G+ AAK + +V+ +
Sbjct: 11 VAIIGTGTAGMGAYRAAKKHTDKVVLI 37
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 26.6 bits (59), Expect = 1.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARVICV 86
V+V+ +G G ++A GA+VI +
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILI 155
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle
structural genomics center for infectious disease, S
tuberculosis; 1.82A {Mycobacterium smegmatis str}
Length = 381
Score = 26.4 bits (59), Expect = 1.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARV 83
LVL G GL + AK GA+
Sbjct: 187 ALVLGVGVAGLQALATAKRLGAKT 210
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 26.2 bits (57), Expect = 1.9
Identities = 8/53 (15%), Positives = 14/53 (26%), Gaps = 9/53 (16%)
Query: 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVC---------KYVGIRIFPYKKI 100
T +++L G + VI Y G+ I +
Sbjct: 52 ATRLVILGTKGFGAHLMNVRHERPCEVIAAVDDFRYHSGELYYGLPIISTDRF 104
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 26.5 bits (59), Expect = 1.9
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR 93
+V+ AG G+ L G + K R
Sbjct: 10 AVVIGAGGAGMRAALQISQSGQTCALLSKVFPTR 43
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A*
2yau_A* 2x50_A* 2ve2_A*
Length = 490
Score = 26.4 bits (59), Expect = 2.0
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 61 LVLSAGPIGLVT-ILAAKAYGARVICV 86
+V+ AG GL AA + RV +
Sbjct: 7 VVIGAGSGGLEAGWNAASLHKKRVAVI 33
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 26.1 bits (58), Expect = 2.0
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARVI 84
V+V G G+ + A GA V+
Sbjct: 44 VVVAGYGIAGVAASIEAARAGADVL 68
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 26.0 bits (58), Expect = 2.2
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 60 VLVLSAGPIGLVT-ILAAKAYGARVICV 86
++V+ G G+ AA+ + A+V V
Sbjct: 5 LIVIGGGSGGMAAARRAAR-HNAKVALV 31
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 25.9 bits (57), Expect = 2.3
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 47 HACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV 86
+ R G+ GT + + +GP G ++I AK + +
Sbjct: 35 NIINRFGITAGT-CIDIGSGP-GALSIALAKQSDFSIRAL 72
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 26.2 bits (58), Expect = 2.3
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARVICVCK 88
VLV+ AG G LAAK GA VI V K
Sbjct: 124 VLVVGAGSAGFNASLAAKKAGANVILVDK 152
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II,
membrane protein, heme protein, iron sulfur PROT
cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL;
1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A*
2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A*
3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A*
3aea_A* 3aeb_A* 3aec_A* ...
Length = 621
Score = 26.1 bits (58), Expect = 2.4
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR 93
+V+ AG GL G CV K R
Sbjct: 21 AVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTR 54
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET:
FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A*
1qlb_A*
Length = 660
Score = 26.1 bits (58), Expect = 2.4
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARVICVCK 88
LV+ G GL +A + G I +
Sbjct: 8 SLVIGGGLAGLRAAVATQQKGLSTIVLSL 36
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center
for eukaryotic structural genomics, CESG, structural
genomics; 2.79A {Cyanidioschyzon merolae}
Length = 281
Score = 26.0 bits (56), Expect = 2.5
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 57 GTSVLVLSAGPIGLVTILAAKAYGARVIC 85
G +V L AG GLV+I+A A +V+
Sbjct: 80 GKTVCELGAGA-GLVSIVAFLAGADQVVA 107
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD;
1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 25.9 bits (58), Expect = 2.6
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARVICV 86
+ + G G+ +I A YG + +
Sbjct: 7 YIAIGGGSGGIASINRAAMYGQKCALI 33
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 26.0 bits (57), Expect = 2.6
Identities = 4/30 (13%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 57 GTSVLVLSAGPIGLVTILAAKAYGARVICV 86
+ + G G T+ A ++ +
Sbjct: 47 DAKIADIGCG-TGGQTLFLADYVKGQITGI 75
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-;
ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP
MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1
d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A*
1ez1_A*
Length = 391
Score = 25.2 bits (56), Expect = 3.8
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89
T V++L +G +G + + G VI V +Y
Sbjct: 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRY 43
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 25.3 bits (56), Expect = 4.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 62 VLSAGPIGLVTILAAKAYGARVIC 85
V+ G IG V I K +GA+VI
Sbjct: 150 VMGTGHIGQVAIKLFKGFGAKVIA 173
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 25.3 bits (56), Expect = 4.2
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 62 VLSAGPIGLVTILAAKAYGARVIC 85
V+ G IG V GA VI
Sbjct: 151 VVGLGRIGRVAAQIFHGMGATVIG 174
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 25.4 bits (55), Expect = 4.4
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 57 GTSVLVLSAGPIGLVTILAAKAYGARVICV 86
VL + +G G++ + AAKA +VI +
Sbjct: 67 DKVVLDVGSGT-GILCMFAAKAGARKVIGI 95
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 24.9 bits (55), Expect = 4.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 62 VLSAGPIGLVTILAAKAYGARVIC 85
V+ G IG V + + +GA+VI
Sbjct: 151 VVGTGHIGQVFMQIMEGFGAKVIT 174
>2olv_A Penicillin-binding protein 2; transpeptidase fold,
glycosyltransferase family 51, lysozyme transferase;
HET: M0E; 2.80A {Staphylococcus aureus} SCOP: d.2.1.10
e.3.1.1 PDB: 2olu_A* 3dwk_A*
Length = 669
Score = 25.0 bits (55), Expect = 4.8
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 10/28 (35%)
Query: 14 SQFY--KHAADFCYKLPDHLTLEEGALL 39
+++Y K D L L E A L
Sbjct: 150 AKYYFNKDLKD--------LNLAEEAYL 169
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 25.2 bits (56), Expect = 4.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARVI 84
V+V+ GP GL+ + A GA V+
Sbjct: 29 VIVIGGGPSGLMAAIGAAEEGANVL 53
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 25.0 bits (55), Expect = 5.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP 96
VLV+ AG GL T + G RV+ V + G+ +P
Sbjct: 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYP 44
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A
{Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB:
1c0i_A* 1c0l_A* 1c0k_A*
Length = 363
Score = 25.0 bits (54), Expect = 5.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARV 83
V+VL +G IGL + L G V
Sbjct: 9 VVVLGSGVIGLSSALILARKGYSV 32
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 24.9 bits (55), Expect = 5.6
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89
+L+L +G +G + A+ G V+ V +Y
Sbjct: 19 AQKILLLGSGELGKEIAIEAQRLGVEVVAVDRY 51
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 24.8 bits (54), Expect = 5.9
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 57 GTSVLVLSAGPIGLVTILAAKAYGARVICV 86
L L AG G + +G + C+
Sbjct: 83 QAKGLDLGAG-YGGAARFLVRKFGVSIDCL 111
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 24.9 bits (54), Expect = 6.1
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 58 TSVLVLSAGPIGLVT-ILAAKAYGARVI 84
+ V ++ GP G V + K G V
Sbjct: 24 SKVAIIGGGPAGSVAGLTLHKL-GHDVT 50
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; HET:
FDA; 2.51A {Sinorhizobium meliloti}
Length = 417
Score = 24.8 bits (55), Expect = 6.1
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARVI 84
V+++ AG G++ + A G RV+
Sbjct: 30 VVIIGAGAAGMMCAIEAGKRGRRVL 54
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 24.7 bits (55), Expect = 6.2
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARVI 84
+++ AG GL G V
Sbjct: 7 NIIIGAGAAGLFCAAQLAKLGKSVT 31
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 24.8 bits (55), Expect = 6.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 60 VLVLSAGPIGLVTILAAKAYGARVICV 86
++V+ G GL A GARV C+
Sbjct: 12 LIVIGGGSAGLACAKEAVLNGARVACL 38
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET:
DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1
PDB: 1xnh_A
Length = 268
Score = 24.5 bits (54), Expect = 7.2
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 46 VHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV 86
V V G S + SA +V +L K + +
Sbjct: 20 VQKRGFKKVVYGLSGGLDSA----VVGVLCQKVFKENAHAL 56
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 24.1 bits (53), Expect = 9.0
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 62 VLSAGPIGLVTILAAKAYGARVIC 85
V+ G IG + A+G +V+C
Sbjct: 146 VIGTGRIGSRVAMYGLAFGMKVLC 169
>3fwm_A Penicillin-binding protein 1B; bacterial cell WALL synthesis,
antibiotics design, transferase, hydrolase; HET: M0E;
2.16A {Escherichia coli} PDB: 3fwl_A* 3vma_A*
Length = 751
Score = 24.2 bits (53), Expect = 9.3
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 10/28 (35%)
Query: 14 SQFY--KHAADFCYKLPDHLTLEEGALL 39
S +Y + + L+L++ ALL
Sbjct: 278 SLYYFGRPVEE--------LSLDQQALL 297
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES
protein structure initiative, northeast structural
genomics consortium; HET: FAD; 2.60A {Cytophaga
hutchinsonii}
Length = 421
Score = 24.4 bits (53), Expect = 9.4
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 60 VLVLSAGPIGLVT-ILAAKAYGARVI 84
VLV+ AGP G V L K+ G +V
Sbjct: 8 VLVIGAGPAGTVAASLVNKS-GFKVK 32
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 24.3 bits (53), Expect = 10.0
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 58 TSVLVLSAGPIGLVTILAAKAYGARVICV 86
T V+V+ GP+GL+ +A G + +
Sbjct: 50 TDVVVVGGGPVGLMLAGELRAGGVGALVL 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.143 0.456
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,591,699
Number of extensions: 84605
Number of successful extensions: 542
Number of sequences better than 10.0: 1
Number of HSP's gapped: 503
Number of HSP's successfully gapped: 158
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.3 bits)