Query psy16558
Match_columns 245
No_of_seqs 23 out of 25
Neff 3.4
Searched_HMMs 46136
Date Sat Aug 17 00:14:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4014|consensus 14.4 23 0.0005 32.8 -2.5 24 1-24 184-207 (248)
2 COG1926 Predicted phosphoribos 10.4 75 0.0016 29.3 -0.5 10 3-12 134-143 (220)
3 KOG4497|consensus 3.9 4.8E+02 0.011 26.3 1.2 23 5-27 319-341 (447)
4 PF02526 GBP_repeat: Glycophor 2.6 2.4E+02 0.0052 19.5 -1.6 14 5-18 6-19 (38)
5 PF07551 DUF1534: Protein of u 2.5 6.9E+02 0.015 18.2 0.5 15 2-16 27-41 (48)
6 PF07107 WI12: Wound-induced p 2.3 7.3E+02 0.016 20.7 0.4 8 1-8 1-8 (109)
7 COG5385 Uncharacterized protei 2.1 7.4E+02 0.016 22.7 0.2 15 2-16 68-83 (214)
8 PF04606 Ogr_Delta: Ogr/Delta- 1.8 1E+03 0.022 16.1 0.5 22 2-23 10-31 (47)
9 KOG0404|consensus 1.7 1.1E+03 0.023 22.9 0.6 12 3-14 118-129 (322)
10 PF10913 DUF2706: Protein of u 1.6 1.4E+03 0.031 17.1 1.0 7 19-25 19-25 (60)
No 1
>KOG4014|consensus
Probab=14.45 E-value=23 Score=32.78 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=19.5
Q ss_pred Cccccccccceeeccceeeccccc
Q psy16558 1 MRIATGASMKAYSLDTYYPCKVTT 24 (245)
Q Consensus 1 ~~~~~~~~~~~~~~d~~~~C~~~s 24 (245)
|..|.-.+||||-||-+|.|++.|
T Consensus 184 Mdka~qfa~kACel~~~~aCAN~S 207 (248)
T KOG4014|consen 184 MDKALQFAIKACELDIPQACANVS 207 (248)
T ss_pred HHHHHHHHHHHHhcCChHHHhhHH
Confidence 334555689999999999999986
No 2
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=10.37 E-value=75 Score=29.34 Aligned_cols=10 Identities=80% Similarity=0.903 Sum_probs=8.4
Q ss_pred ccccccccee
Q psy16558 3 IATGASMKAY 12 (245)
Q Consensus 3 ~~~~~~~~~~ 12 (245)
||||++|+|-
T Consensus 134 iATGatm~aA 143 (220)
T COG1926 134 IATGATMKAA 143 (220)
T ss_pred cchhHHHHHH
Confidence 7999999873
No 3
>KOG4497|consensus
Probab=3.92 E-value=4.8e+02 Score=26.26 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.7
Q ss_pred cccccceeeccceeecccccccc
Q psy16558 5 TGASMKAYSLDTYYPCKVTTYYP 27 (245)
Q Consensus 5 ~~~~~~~~~~d~~~~C~~~s~~p 27 (245)
-||+|-|.+-|.+|-|++.+-+|
T Consensus 319 ~g~g~lafs~Ds~y~aTrnd~~P 341 (447)
T KOG4497|consen 319 CGAGKLAFSCDSTYAATRNDKYP 341 (447)
T ss_pred cccceeeecCCceEEeeecCCCC
Confidence 48999999999999999988776
No 4
>PF02526 GBP_repeat: Glycophorin-binding protein; InterPro: IPR003681 The glycophorin-binding protein contains a tandem repeat. The repeated sequence determines the binding domain for an erythrocyte receptor binding protein of Plasmodium falciparum, the malarial parasite []. Erythrocyte invasion by the malarial merozoite is a receptor-mediated process, an obligatory step in the development of the parasite. The P. falciparum protein binds to the erythrocyte receptor glycophorin.
Probab=2.65 E-value=2.4e+02 Score=19.46 Aligned_cols=14 Identities=50% Similarity=0.762 Sum_probs=10.6
Q ss_pred cccccceeecccee
Q psy16558 5 TGASMKAYSLDTYY 18 (245)
Q Consensus 5 ~~~~~~~~~~d~~~ 18 (245)
.|.-||||..|--|
T Consensus 6 egqimk~yaadpey 19 (38)
T PF02526_consen 6 EGQIMKAYAADPEY 19 (38)
T ss_pred hhHHHHHHhcCHHH
Confidence 47789999888654
No 5
>PF07551 DUF1534: Protein of unknown function (DUF1534); InterPro: IPR011433 This family is found in a group of small bacterial proteins. Its function is not known.
Probab=2.53 E-value=6.9e+02 Score=18.15 Aligned_cols=15 Identities=40% Similarity=0.490 Sum_probs=12.1
Q ss_pred ccccccccceeeccc
Q psy16558 2 RIATGASMKAYSLDT 16 (245)
Q Consensus 2 ~~~~~~~~~~~~~d~ 16 (245)
+|.-|||-.||.+|-
T Consensus 27 kiGR~asrtac~r~a 41 (48)
T PF07551_consen 27 KIGRGASRTACPRDA 41 (48)
T ss_pred ecccCcccccccCCC
Confidence 578899998988774
No 6
>PF07107 WI12: Wound-induced protein WI12; InterPro: IPR009798 This entry consists of several plant wound-induced protein sequences related to WI12 from Mesembryanthemum crystallinum (Common ice plant) (Q9XES3 from SWISSPROT). Wounding, methyl jasmonate, and pathogen infection is known to induce local WI12 expression. WI12 expression is also thought to be developmentally controlled in the placenta and developing seeds. WI12 preferentially accumulates in the cell wall and it has been suggested that it plays a role in the reinforcement of cell wall composition after wounding and during plant development [].
Probab=2.26 E-value=7.3e+02 Score=20.66 Aligned_cols=8 Identities=75% Similarity=1.012 Sum_probs=4.9
Q ss_pred Cccccccc
Q psy16558 1 MRIATGAS 8 (245)
Q Consensus 1 ~~~~~~~~ 8 (245)
||+.||++
T Consensus 1 MrlLTG~~ 8 (109)
T PF07107_consen 1 MRLLTGAS 8 (109)
T ss_pred CeeeeCCC
Confidence 66666654
No 7
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=2.05 E-value=7.4e+02 Score=22.74 Aligned_cols=15 Identities=60% Similarity=0.620 Sum_probs=10.2
Q ss_pred ccccccccce-eeccc
Q psy16558 2 RIATGASMKA-YSLDT 16 (245)
Q Consensus 2 ~~~~~~~~~~-~~~d~ 16 (245)
|||.|||-.| -+.|+
T Consensus 68 R~AFGAsgSag~~iDt 83 (214)
T COG5385 68 RLAFGASGSAGASIDT 83 (214)
T ss_pred HHHhcccccccccccc
Confidence 6777877666 55564
No 8
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=1.81 E-value=1e+03 Score=16.11 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=12.2
Q ss_pred ccccccccceeeccceeecccc
Q psy16558 2 RIATGASMKAYSLDTYYPCKVT 23 (245)
Q Consensus 2 ~~~~~~~~~~~~~d~~~~C~~~ 23 (245)
||.+-..|..-+-|.|+-|.+.
T Consensus 10 ~ir~S~~~s~~~~~~Y~qC~N~ 31 (47)
T PF04606_consen 10 RIRTSRQLSPLTRELYCQCTNP 31 (47)
T ss_pred EEEEchhhCcceEEEEEEECCC
Confidence 4444444555556666666654
No 9
>KOG0404|consensus
Probab=1.69 E-value=1.1e+03 Score=22.89 Aligned_cols=12 Identities=58% Similarity=0.684 Sum_probs=9.6
Q ss_pred cccccccceeec
Q psy16558 3 IATGASMKAYSL 14 (245)
Q Consensus 3 ~~~~~~~~~~~~ 14 (245)
+||||+.|...|
T Consensus 118 ~atGAsAkRl~~ 129 (322)
T KOG0404|consen 118 LATGASAKRLHL 129 (322)
T ss_pred Eecccceeeeec
Confidence 689999988764
No 10
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=1.63 E-value=1.4e+03 Score=17.11 Aligned_cols=7 Identities=14% Similarity=0.439 Sum_probs=2.8
Q ss_pred ecccccc
Q psy16558 19 PCKVTTY 25 (245)
Q Consensus 19 ~C~~~s~ 25 (245)
+|++.-+
T Consensus 19 sctpsap 25 (60)
T PF10913_consen 19 SCTPSAP 25 (60)
T ss_pred cCCCCCC
Confidence 3444333
Done!