Query psy16558
Match_columns 245
No_of_seqs 23 out of 25
Neff 3.4
Searched_HMMs 29240
Date Sat Aug 17 00:15:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16558.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16558hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jp6_A Toxin TC32, potassium c 13.6 47 0.0016 21.7 0.4 12 5-16 21-32 (37)
2 2ep0_A Zinc finger protein 28 2.5 4.8E+02 0.016 14.7 0.6 15 6-20 1-15 (46)
3 2em8_A Zinc finger protein 224 2.3 5.9E+02 0.02 14.3 0.9 15 6-20 1-15 (46)
4 2ytt_A Zinc finger protein 473 2.1 4.6E+02 0.016 14.9 0.2 15 6-20 1-15 (46)
5 2eom_A ZFP-95, zinc finger pro 1.8 6.8E+02 0.023 14.1 0.6 15 6-20 1-15 (46)
6 2eoh_A Zinc finger protein 28 1.5 8.4E+02 0.029 13.6 0.5 14 7-20 2-15 (46)
7 2eon_A ZFP-95, zinc finger pro 1.4 8.8E+02 0.03 13.6 0.5 14 7-20 2-15 (46)
8 1wd5_A Hypothetical protein TT 1.4 5.2E+02 0.018 20.7 -0.7 9 3-11 130-138 (208)
9 2em7_A Zinc finger protein 224 1.3 1E+03 0.036 13.1 0.7 11 9-19 4-14 (46)
10 1dul_A Signal recognition part 1.3 6E+02 0.02 18.2 -0.5 8 2-9 40-47 (69)
No 1
>2jp6_A Toxin TC32, potassium channel toxin alpha-KTX 18.1; NMR {Tityus cambridgei}
Probab=13.59 E-value=47 Score=21.69 Aligned_cols=12 Identities=42% Similarity=0.451 Sum_probs=10.5
Q ss_pred cccccceeeccc
Q psy16558 5 TGASMKAYSLDT 16 (245)
Q Consensus 5 ~~~~~~~~~~d~ 16 (245)
.|.|||.+-+|+
T Consensus 21 ~gksm~scqgdt 32 (37)
T 2jp6_A 21 LGKSMESCQGDT 32 (37)
T ss_dssp HTSEEECSSSSC
T ss_pred HhhhhhhcCCCc
Confidence 488999999997
No 2
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=2.49 E-value=4.8e+02 Score=14.71 Aligned_cols=15 Identities=27% Similarity=0.425 Sum_probs=7.4
Q ss_pred ccccceeeccceeec
Q psy16558 6 GASMKAYSLDTYYPC 20 (245)
Q Consensus 6 ~~~~~~~~~d~~~~C 20 (245)
|++|+.-+++..+.|
T Consensus 1 gs~~~~h~~~~~~~C 15 (46)
T 2ep0_A 1 GSSGSSGTGEKPYKC 15 (46)
T ss_dssp CCCCCSSTTCCSEEC
T ss_pred CCCCCCCCCCCCeeC
Confidence 445555555544444
No 3
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=2.30 E-value=5.9e+02 Score=14.35 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=7.1
Q ss_pred ccccceeeccceeec
Q psy16558 6 GASMKAYSLDTYYPC 20 (245)
Q Consensus 6 ~~~~~~~~~d~~~~C 20 (245)
|++|+.-+++..+.|
T Consensus 1 ~~h~~~h~~~k~~~C 15 (46)
T 2em8_A 1 GSSGSSGSGEKPYKC 15 (46)
T ss_dssp CCCCCCCCSCCSEEC
T ss_pred CCCCCCCCCCCCeEC
Confidence 344554444444444
No 4
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=2.14 E-value=4.6e+02 Score=14.86 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=6.8
Q ss_pred ccccceeeccceeec
Q psy16558 6 GASMKAYSLDTYYPC 20 (245)
Q Consensus 6 ~~~~~~~~~d~~~~C 20 (245)
|++|+.-+++..+.|
T Consensus 1 g~~~~~h~~~k~~~C 15 (46)
T 2ytt_A 1 GSSGSSGEGEKPYQC 15 (46)
T ss_dssp CCCSSSCSCCCTTCC
T ss_pred CCCCCCCCCCCCeeC
Confidence 344444444444444
No 5
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.81 E-value=6.8e+02 Score=14.13 Aligned_cols=15 Identities=20% Similarity=0.133 Sum_probs=6.3
Q ss_pred ccccceeeccceeec
Q psy16558 6 GASMKAYSLDTYYPC 20 (245)
Q Consensus 6 ~~~~~~~~~d~~~~C 20 (245)
|.+|+.-+++..+.|
T Consensus 1 g~~~~~h~~~k~~~C 15 (46)
T 2eom_A 1 GSSGSSGHGERGHRC 15 (46)
T ss_dssp CCCCCCCCCCSSCCC
T ss_pred CCCCCCCCCCCCcCC
Confidence 334444444444433
No 6
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=1.47 E-value=8.4e+02 Score=13.61 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=5.4
Q ss_pred cccceeeccceeec
Q psy16558 7 ASMKAYSLDTYYPC 20 (245)
Q Consensus 7 ~~~~~~~~d~~~~C 20 (245)
+.|+.-+++..+.|
T Consensus 2 ~H~~~H~~~k~~~C 15 (46)
T 2eoh_A 2 SSGSSGSGKKPYEC 15 (46)
T ss_dssp CCCCSCCCSCSCCC
T ss_pred CCCCCcCCCCCcCC
Confidence 33443333333333
No 7
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=1.43 E-value=8.8e+02 Score=13.59 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=5.4
Q ss_pred cccceeeccceeec
Q psy16558 7 ASMKAYSLDTYYPC 20 (245)
Q Consensus 7 ~~~~~~~~d~~~~C 20 (245)
+.|+.-+++..+.|
T Consensus 2 ~h~~~H~~~k~~~C 15 (46)
T 2eon_A 2 SSGSSGTGEKPYKC 15 (46)
T ss_dssp CCSSSCSSCCSCBC
T ss_pred CCCCCCCCCcccCC
Confidence 33443334333333
No 8
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Probab=1.43 E-value=5.2e+02 Score=20.72 Aligned_cols=9 Identities=78% Similarity=1.003 Sum_probs=5.0
Q ss_pred cccccccce
Q psy16558 3 IATGASMKA 11 (245)
Q Consensus 3 ~~~~~~~~~ 11 (245)
|+||++|++
T Consensus 130 i~TG~Tl~~ 138 (208)
T 1wd5_A 130 VATGASMEA 138 (208)
T ss_dssp BSSCHHHHH
T ss_pred ccHHHHHHH
Confidence 456666554
No 9
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.34 E-value=1e+03 Score=13.12 Aligned_cols=11 Identities=9% Similarity=-0.067 Sum_probs=4.0
Q ss_pred cceeeccceee
Q psy16558 9 MKAYSLDTYYP 19 (245)
Q Consensus 9 ~~~~~~d~~~~ 19 (245)
|+.-+++..+.
T Consensus 4 ~~~H~~~k~~~ 14 (46)
T 2em7_A 4 GSSGTGEKPYK 14 (46)
T ss_dssp CCSSSCCCSEE
T ss_pred CCCCCCCcCcc
Confidence 33333333333
No 10
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=1.33 E-value=6e+02 Score=18.17 Aligned_cols=8 Identities=63% Similarity=1.003 Sum_probs=5.7
Q ss_pred cccccccc
Q psy16558 2 RIATGASM 9 (245)
Q Consensus 2 ~~~~~~~~ 9 (245)
|||.|+..
T Consensus 40 RIA~GSG~ 47 (69)
T 1dul_A 40 RIAAGSGM 47 (69)
T ss_dssp HHHHHTTC
T ss_pred HHHccCCC
Confidence 78877754
Done!