Query psy16558
Match_columns 245
No_of_seqs 23 out of 25
Neff 3.4
Searched_HMMs 13730
Date Sat Aug 17 00:15:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16558.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16558hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1efub3 a.5.2.2 (B:1-54) Elong 2.3 94 0.0068 20.1 -1.5 11 2-12 12-22 (54)
2 d1wd5a_ c.61.1.1 (A:) Putative 1.9 1.8E+02 0.013 21.5 -0.5 10 3-12 130-139 (208)
3 d1aipc1 a.5.2.2 (C:2-53) Elong 1.8 1.2E+02 0.0089 19.3 -1.5 10 2-11 10-19 (52)
4 d1uz5a2 b.103.1.1 (A:5-180) Mo 1.7 2.7E+02 0.019 20.7 0.1 8 2-9 96-103 (176)
5 d1ma3a_ c.31.1.5 (A:) AF0112, 1.6 3.3E+02 0.024 20.5 0.4 11 4-14 21-31 (252)
6 d1mzaa_ b.47.1.2 (A:) Granzyme 1.5 3.1E+02 0.023 19.3 0.2 7 1-7 1-7 (240)
7 d1okga3 d.26.1.3 (A:302-373) 3 1.5 4.3E+02 0.031 17.7 0.9 14 4-18 9-22 (72)
8 d1xb2b1 a.5.2.2 (B:56-111) Elo 1.5 1.6E+02 0.012 19.0 -1.5 10 2-11 12-21 (56)
9 d1wu2a2 b.103.1.1 (A:6-180) Mo 1.4 3.3E+02 0.024 19.9 0.1 8 2-9 97-104 (175)
10 d2ftsa2 b.103.1.1 (A:318-498) 1.2 3.8E+02 0.028 19.6 0.1 9 1-9 92-100 (181)
No 1
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.28 E-value=94 Score=20.06 Aligned_cols=11 Identities=45% Similarity=0.468 Sum_probs=7.5
Q ss_pred cccccccccee
Q psy16558 2 RIATGASMKAY 12 (245)
Q Consensus 2 ~~~~~~~~~~~ 12 (245)
|-.|||+|..|
T Consensus 12 R~~Tgag~~dC 22 (54)
T d1efub3 12 RERTGAGMMDC 22 (54)
T ss_dssp HHHHCCCHHHH
T ss_pred HHHhCCCHHHH
Confidence 66788887543
No 2
>d1wd5a_ c.61.1.1 (A:) Putative phosphoribosyltransferase TT1426 (TTHA1462) {Thermus thermophilus [TaxId: 274]}
Probab=1.95 E-value=1.8e+02 Score=21.51 Aligned_cols=10 Identities=70% Similarity=0.830 Sum_probs=5.9
Q ss_pred ccccccccee
Q psy16558 3 IATGASMKAY 12 (245)
Q Consensus 3 ~~~~~~~~~~ 12 (245)
|+||+.|+|.
T Consensus 130 I~TG~T~~aa 139 (208)
T d1wd5a_ 130 VATGASMEAA 139 (208)
T ss_dssp BSSCHHHHHH
T ss_pred hhhhHHHHHH
Confidence 5666666553
No 3
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=1.83 E-value=1.2e+02 Score=19.33 Aligned_cols=10 Identities=60% Similarity=0.630 Sum_probs=6.8
Q ss_pred ccccccccce
Q psy16558 2 RIATGASMKA 11 (245)
Q Consensus 2 ~~~~~~~~~~ 11 (245)
|-.|||+|..
T Consensus 10 R~~Tga~~~d 19 (52)
T d1aipc1 10 REATGAGMMD 19 (52)
T ss_dssp HHHHCCCHHH
T ss_pred HHHhCCCHHH
Confidence 5567887754
No 4
>d1uz5a2 b.103.1.1 (A:5-180) Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Probab=1.70 E-value=2.7e+02 Score=20.69 Aligned_cols=8 Identities=50% Similarity=0.675 Sum_probs=5.1
Q ss_pred cccccccc
Q psy16558 2 RIATGASM 9 (245)
Q Consensus 2 ~~~~~~~~ 9 (245)
||.|||-|
T Consensus 96 ~I~TGa~l 103 (176)
T d1uz5a2 96 YISTGAML 103 (176)
T ss_dssp EECTTCBC
T ss_pred Eeeccccc
Confidence 56666655
No 5
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=1.57 E-value=3.3e+02 Score=20.47 Aligned_cols=11 Identities=45% Similarity=0.296 Sum_probs=4.9
Q ss_pred ccccccceeec
Q psy16558 4 ATGASMKAYSL 14 (245)
Q Consensus 4 ~~~~~~~~~~~ 14 (245)
.|||.|-+=+|
T Consensus 21 ~tGAGiS~~SG 31 (252)
T d1ma3a_ 21 FTGAGISAESG 31 (252)
T ss_dssp EECGGGSCC--
T ss_pred EECchhhhhhC
Confidence 45555555444
No 6
>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.54 E-value=3.1e+02 Score=19.25 Aligned_cols=7 Identities=43% Similarity=0.620 Sum_probs=3.8
Q ss_pred Ccccccc
Q psy16558 1 MRIATGA 7 (245)
Q Consensus 1 ~~~~~~~ 7 (245)
|||+-|.
T Consensus 1 ~ri~gG~ 7 (240)
T d1mzaa_ 1 MEIIGGK 7 (240)
T ss_dssp CCCCCCE
T ss_pred CEEECCE
Confidence 5565553
No 7
>d1okga3 d.26.1.3 (A:302-373) 3-mercaptopyruvate sulfurtransferase, C-terminal domain {Leishmania major [TaxId: 5664]}
Probab=1.51 E-value=4.3e+02 Score=17.70 Aligned_cols=14 Identities=43% Similarity=0.482 Sum_probs=10.0
Q ss_pred ccccccceeecccee
Q psy16558 4 ATGASMKAYSLDTYY 18 (245)
Q Consensus 4 ~~~~~~~~~~~d~~~ 18 (245)
+.|-.||| .||++-
T Consensus 9 ~LgdNpKA-~ld~~T 22 (72)
T d1okga3 9 SLGDNPKA-NLDTMT 22 (72)
T ss_dssp CCTTSCBC-CTTTCC
T ss_pred ccCCCchh-cccceE
Confidence 45777888 777764
No 8
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=1.46 E-value=1.6e+02 Score=19.01 Aligned_cols=10 Identities=40% Similarity=0.341 Sum_probs=6.6
Q ss_pred ccccccccce
Q psy16558 2 RIATGASMKA 11 (245)
Q Consensus 2 ~~~~~~~~~~ 11 (245)
|-.|||+|..
T Consensus 12 Re~Tga~~~d 21 (56)
T d1xb2b1 12 RRKTGYSFIN 21 (56)
T ss_dssp HHHHCCCHHH
T ss_pred HHHhCCCHHH
Confidence 5567887753
No 9
>d1wu2a2 b.103.1.1 (A:6-180) Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains {Pyrococcus horikoshii, PH1647 [TaxId: 53953]}
Probab=1.40 E-value=3.3e+02 Score=19.92 Aligned_cols=8 Identities=25% Similarity=0.692 Sum_probs=4.8
Q ss_pred cccccccc
Q psy16558 2 RIATGASM 9 (245)
Q Consensus 2 ~~~~~~~~ 9 (245)
||.|||-|
T Consensus 97 ~I~TGa~i 104 (175)
T d1wu2a2 97 KVLTGTRI 104 (175)
T ss_dssp EECTTCBC
T ss_pred EEeeccce
Confidence 56666654
No 10
>d2ftsa2 b.103.1.1 (A:318-498) Gephyrin, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=1.25 E-value=3.8e+02 Score=19.62 Aligned_cols=9 Identities=56% Similarity=1.003 Sum_probs=0.0
Q ss_pred Ccccccccc
Q psy16558 1 MRIATGASM 9 (245)
Q Consensus 1 ~~~~~~~~~ 9 (245)
+||.|||-|
T Consensus 92 v~I~TGa~l 100 (181)
T d2ftsa2 92 MRVTTGAPI 100 (181)
T ss_dssp EEECTTCBC
T ss_pred EEcccCccc
Done!