RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy16558
         (245 letters)



>gnl|CDD|152349 pfam11914, DUF3432, Domain of unknown function (DUF3432).  This
           presumed domain is functionally uncharacterized. This
           domain is found in eukaryotes. This domain is about 100
           amino acids in length. This domain is found associated
           with pfam00096. This domain has two conserved sequence
           motifs: YPSPV and PSP.
          Length = 100

 Score = 26.6 bits (58), Expect = 5.6
 Identities = 19/79 (24%), Positives = 26/79 (32%)

Query: 90  YPCKMTTYYPCKVTTYYPCKATTYYPCKVTTYYPCKSPRDYPYKVTTYYPCKVTTYYPCK 149
                 + Y     + YP    T YP  V T Y       YP  V T +P          
Sbjct: 9   TASPNISIYSSSPVSSYPSPIATSYPSPVPTSYSSPVSSCYPSPVHTSFPSPSIATTYPS 68

Query: 150 VTTYYPCKVTTYYPCKATT 168
           V+  +  +V T +P    T
Sbjct: 69  VSPTFQTQVATSFPSSVVT 87



 Score = 26.6 bits (58), Expect = 5.8
 Identities = 20/81 (24%), Positives = 31/81 (38%)

Query: 72  PYSPCKVTTYSPCKVTTYYPCKMTTYYPCKVTTYYPCKATTYYPCKVTTYYPCKSPRDYP 131
             +     +       + YP  + T YP  V T Y    ++ YP  V T +P  S     
Sbjct: 7   VSTASPNISIYSSSPVSSYPSPIATSYPSPVPTSYSSPVSSCYPSPVHTSFPSPSIATTY 66

Query: 132 YKVTTYYPCKVTTYYPCKVTT 152
             V+  +  +V T +P  V T
Sbjct: 67  PSVSPTFQTQVATSFPSSVVT 87



 Score = 26.6 bits (58), Expect = 6.2
 Identities = 20/79 (25%), Positives = 31/79 (39%)

Query: 18 YPCKVTTYYPCKVTTYYPCKVTTYYPCKVTTYYPCKVTTYYPFKVTTYYPCKMTPYSPCK 77
                + Y     + YP  + T YP  V T Y   V++ YP  V T +P      +   
Sbjct: 9  TASPNISIYSSSPVSSYPSPIATSYPSPVPTSYSSPVSSCYPSPVHTSFPSPSIATTYPS 68

Query: 78 VTTYSPCKVTTYYPCKMTT 96
          V+     +V T +P  + T
Sbjct: 69 VSPTFQTQVATSFPSSVVT 87



 Score = 26.3 bits (57), Expect = 8.5
 Identities = 19/83 (22%), Positives = 30/83 (36%)

Query: 126 SPRDYPYKVTTYYPCKVTTYYPCKVTTYYPCKVTTYYPCKATTYYPYKVTPYYPCKSPRD 185
           +P        + Y     + YP  + T YP  V T Y    ++ YP  V   +P  S   
Sbjct: 5   APVSTASPNISIYSSSPVSSYPSPIATSYPSPVPTSYSSPVSSCYPSPVHTSFPSPSIAT 64

Query: 186 YPYKVTTYYPCKATTYYPCKATT 208
               V+  +  +  T +P    T
Sbjct: 65  TYPSVSPTFQTQVATSFPSSVVT 87


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.137    0.483 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,107,631
Number of extensions: 918851
Number of successful extensions: 526
Number of sequences better than 10.0: 1
Number of HSP's gapped: 496
Number of HSP's successfully gapped: 23
Length of query: 245
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 151
Effective length of database: 6,768,326
Effective search space: 1022017226
Effective search space used: 1022017226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.6 bits)