RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16558
         (245 letters)



>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate,
           structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex
           aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
          Length = 134

 Score = 28.7 bits (65), Expect = 0.77
 Identities = 6/29 (20%), Positives = 9/29 (31%)

Query: 119 TTYYPCKSPRDYPYKVTTYYPCKVTTYYP 147
             +Y      +  +K   YY  K     P
Sbjct: 64  EIHYWYTLKGERIFKTVKYYLMKYKEGEP 92


>3jq1_A SUSD superfamily protein; structural genomic center for structural
           genomics, JCSG, protein structure INI PSI-2, RAGB; HET:
           MSE; 1.55A {Bacteroides vulgatus atcc 8482}
          Length = 481

 Score = 27.0 bits (60), Expect = 6.9
 Identities = 9/62 (14%), Positives = 17/62 (27%)

Query: 127 PRDYPYKVTTYYPCKVTTYYPCKVTTYYPCKVTTYYPCKATTYYPYKVTPYYPCKSPRDY 186
             DY  + +  +  +  TYY       +       Y       +  +     P KS  + 
Sbjct: 296 NFDYRARCSVAWDYEGCTYYQRPFREVFAQDKWKTYWILKYQNWKTQKDEPAPPKSFINE 355

Query: 187 PY 188
             
Sbjct: 356 RA 357


>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna
           unguiculata}
          Length = 225

 Score = 26.5 bits (58), Expect = 8.0
 Identities = 14/133 (10%), Positives = 27/133 (20%), Gaps = 14/133 (10%)

Query: 77  KVTTYSPCKVTTYYPCKMTTYYPCKVTTYYPCK--ATTYYPCKVTTY-----------YP 123
                +        P  +   +P    T +     +          Y           Y 
Sbjct: 85  DYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKGNKYVRIAYD 144

Query: 124 CKSPRDYPYKVTTYYPCKVTTYYPCKVTTYYPCKVTTY-YPCKATTYYPYKVTPYYPCKS 182
            K        +   +P    T +   +   +        Y  K   Y     TP     +
Sbjct: 145 SKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQNYVRIDFTPGGKADT 204

Query: 183 PRDYPYKVTTYYP 195
                  +   +P
Sbjct: 205 LVGNIRPILDGWP 217


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.137    0.483 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,804,545
Number of extensions: 216716
Number of successful extensions: 566
Number of sequences better than 10.0: 1
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 41
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.1 bits)