RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16558
         (245 letters)



>d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44
           {Saccharomyces cerevisiae [TaxId: 4932]}
          Length = 416

 Score = 26.9 bits (58), Expect = 2.8
 Identities = 6/81 (7%), Positives = 16/81 (19%), Gaps = 3/81 (3%)

Query: 103 TTYYPCKATTYYPCKVTTYYPCKSPRDYPYKVTTYY---PCKVTTYYPCKVTTYYPCKVT 159
           + Y   K     P  + T      P    +  +  +               +     +  
Sbjct: 99  SVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAF 158

Query: 160 TYYPCKATTYYPYKVTPYYPC 180
           +Y   +       +       
Sbjct: 159 SYEQAQLRIDDKTQNDELTMG 179



 Score = 26.5 bits (57), Expect = 3.1
 Identities = 8/105 (7%), Positives = 19/105 (18%), Gaps = 6/105 (5%)

Query: 14  LDTYYPCKVTTYY-PCKVTTYYPCKVTTYYPCKVTTYYPCKVTTYYPFKVTTYYPCKMTP 72
           LD     + T+ Y   K     P  + T              +  +              
Sbjct: 89  LDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWEL-----DDSANIV 143

Query: 73  YSPCKVTTYSPCKVTTYYPCKMTTYYPCKVTTYYPCKATTYYPCK 117
                 +     +  +Y   ++      +                
Sbjct: 144 NVNFMKSVIRSREAFSYEQAQLRIDDKTQNDELTMGMRALLKLSV 188


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.483 

Gapped
Lambda     K      H
   0.267   0.0432    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,042,736
Number of extensions: 57522
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 63
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)