BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16559
(207 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q64707|U2AFL_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Mus musculus GN=Zrsr1 PE=2
SV=1
Length = 428
Score = 164 bits (415), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 129/213 (60%), Gaps = 20/213 (9%)
Query: 3 IQEEWEKEQKRLRDIEEKNRQEKEEREAQEKEFKKSIEDFIEGVCNELPDGFRTNVETKP 62
I+ EWE++QK+ R+ EE+ QEK ERE ++++ ++ NE R +P
Sbjct: 103 IKAEWEEQQKKQREEEEQKLQEKRERE-------EAVQKMLDQAENE-----RIWQNPEP 150
Query: 63 DKEL--------CPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREY 114
K+L CPFY+K GACRF + CSR H P+ S TLL+ + FT M+ +Y
Sbjct: 151 PKDLRLEKYRPSCPFYNKTGACRFGNRCSRKHDFPTSSPTLLVKSMFTTFGMEQCRRDDY 210
Query: 115 DTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNERE 174
D+D NLE+ E E ++ F++FY DVLPE +++G+V QFKV CN PHLRGNVYV Y +E E
Sbjct: 211 DSDANLEYSEEETYQQFLDFYHDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEE 270
Query: 175 ALRAFYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
A GR+Y G+Q++ +FC V W A+C
Sbjct: 271 CQAALSLFNGRWYAGRQLQCEFCPVTRWKVAIC 303
>sp|Q62377|U2AFM_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Mus musculus GN=Zrsr2 PE=2
SV=1
Length = 462
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 107/178 (60%), Gaps = 8/178 (4%)
Query: 38 SIEDFIEGVCNELPDGFRTNVETKP--------DKELCPFYSKVGACRFFDHCSRNHIKP 89
+++ ++ NEL +G P D+ CPFYSK GACRF D CSR H P
Sbjct: 139 AVQKMLDQAENELENGGTWQNPEPPMDIRVLEKDRANCPFYSKTGACRFGDRCSRKHNFP 198
Query: 90 SVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVT 149
+ S TLL+ FT M+ +YD D +LEF E E+++ F++FY DVLPE +S+G+V
Sbjct: 199 TSSPTLLIKGMFTTFGMEQCRRDDYDPDSSLEFSEEEIYQQFLDFYYDVLPEFKSVGKVI 258
Query: 150 QFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
QFKV CN PHLRGNVYV Y +E + AF GR+Y G+Q++ +FC V W A+C
Sbjct: 259 QFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGRWYAGRQLQCEFCPVTRWKMAIC 316
>sp|Q15696|U2AFM_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1
SV=2
Length = 482
Score = 160 bits (406), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 107/178 (60%), Gaps = 8/178 (4%)
Query: 38 SIEDFIEGVCNELPDGFRTNVETKP--------DKELCPFYSKVGACRFFDHCSRNHIKP 89
+++ ++ NEL +G P D+ CPFYSK GACRF D CSR H P
Sbjct: 135 ALQKMLDQAENELENGTTWQNPEPPVDFRVMEKDRANCPFYSKTGACRFGDRCSRKHNFP 194
Query: 90 SVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVT 149
+ S TLL+ + FT M+ +YD D +LE+ E E ++ F++FY+DVLPE +++G+V
Sbjct: 195 TSSPTLLIKSMFTTFGMEQCRRDDYDPDASLEYSEEETYQQFLDFYEDVLPEFKNVGKVI 254
Query: 150 QFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
QFKV CN PHLRGNVYV Y +E E A GR+Y G+Q++ +FC V W A+C
Sbjct: 255 QFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAIC 312
>sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2
SV=2
Length = 479
Score = 160 bits (404), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 101/159 (63%), Gaps = 3/159 (1%)
Query: 49 ELPDGFRTNVETKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDN 108
E P FR + D+ CPFYSK GACRF D CSR H P+ S TLL+ + FT M+
Sbjct: 162 EPPVDFRV---MEKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQ 218
Query: 109 KSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVS 168
+YD D +LE+ E E ++ F++FY+DVLPE +++G+V QFKV CN PHLRGNVYV
Sbjct: 219 CRRDDYDPDASLEYSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQ 278
Query: 169 YSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
Y +E E A GR+Y G+Q++ +FC V W A+C
Sbjct: 279 YQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAIC 317
>sp|Q9SY74|C3H5_ARATH Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis
thaliana GN=At1g10320 PE=2 SV=2
Length = 757
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 94/170 (55%), Gaps = 11/170 (6%)
Query: 38 SIEDFIEGVCNELPDGFRTNVETKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLL 97
S + +E V E+P N T+ DK CPF+ K GACRF CSR H P+ S TLL+
Sbjct: 222 SAQQILESVAQEVP-----NFGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLM 276
Query: 98 NNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNK 157
N + + ++ D LE+ + E + EFY+DV E G++ FKVC N
Sbjct: 277 KNMYNGPGIT------WEQDEGLEYTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNG 330
Query: 158 SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
S HL+GNVYV Y + A+ A+ ++ GR++ GKQ+ +F N+ W A+C
Sbjct: 331 SFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEFVNISRWKVAIC 380
>sp|Q6YVX9|C3H16_ORYSJ Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa
subsp. japonica GN=Os02g0557500 PE=2 SV=2
Length = 678
Score = 116 bits (291), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 84/151 (55%), Gaps = 6/151 (3%)
Query: 57 NVETKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDT 116
N + DK CPF+ K GACRF CSR H P S TLL+ N ++ + +
Sbjct: 159 NQPIQQDKAHCPFHLKTGACRFGVRCSRVHFYPDKSCTLLMRNMYSGPGL------ALEQ 212
Query: 117 DINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREAL 176
D LE + E+ + + EFY+DV E G++ FKVC N S HLRGNVYV Y + AL
Sbjct: 213 DEGLECTDEEIEQSYEEFYEDVHTEFLKFGELVNFKVCRNGSLHLRGNVYVHYKSLDSAL 272
Query: 177 RAFYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
A+ ++ GR++ GKQI +F V W A+C
Sbjct: 273 IAYSSMNGRYFAGKQITCEFVAVTRWKVAIC 303
>sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Oryza sativa subsp.
japonica GN=U2AF35A PE=2 SV=1
Length = 290
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 84/148 (56%), Gaps = 4/148 (2%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ D+ CPFY K+GACR D CSR H KPSVS TLLL+N + M + I+
Sbjct: 11 TEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQGNPID 70
Query: 120 LEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAF 179
E ++ F +FY+D+ EL G++ VC N + H+ GNVYV + E +A RA
Sbjct: 71 PE----KIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREEDQAARAL 126
Query: 180 YALTGRFYGGKQIRGQFCNVPLWSKAMC 207
ALTGR+Y G+ I +F V + +A C
Sbjct: 127 QALTGRYYSGRPIIVEFSPVSDFREATC 154
>sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Oryza sativa subsp.
japonica GN=U2AF35B PE=2 SV=1
Length = 304
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 84/148 (56%), Gaps = 4/148 (2%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ D+ CPFY K+GACR D CSR H +P+VS T++L N + M V I+
Sbjct: 11 TEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQPID 70
Query: 120 LEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAF 179
E +M ++F +FY+D+ EL G+V VC N + H+ GNVYV + E +A+ A
Sbjct: 71 PE----KMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAH 126
Query: 180 YALTGRFYGGKQIRGQFCNVPLWSKAMC 207
AL GRFY G+ I ++ V + +A C
Sbjct: 127 NALQGRFYSGRPIIVEYSPVTDFREATC 154
>sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B OS=Arabidopsis thaliana
GN=U2AF35B PE=2 SV=1
Length = 283
Score = 103 bits (257), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ D+ CPFY K+GACR D CSR H +P++S TLLL+N + M V +
Sbjct: 11 TEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPL- 69
Query: 120 LEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAF 179
D +++ +F +FY+D+ EL G+V VC N + H+ GNVYV + E A A
Sbjct: 70 ---DPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAAL 126
Query: 180 YALTGRFYGGKQIRGQFCNVPLWSKAMC 207
AL GRFY G+ I F V + +A C
Sbjct: 127 QALQGRFYSGRPIIADFSPVTDFREATC 154
>sp|Q9S709|U2AFA_ARATH Splicing factor U2af small subunit A OS=Arabidopsis thaliana
GN=U2AF35A PE=1 SV=1
Length = 296
Score = 100 bits (248), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 82/148 (55%), Gaps = 4/148 (2%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ D+ CPFY K+GACR D CSR H +P++S TLLL+N + M V +
Sbjct: 11 TEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPL- 69
Query: 120 LEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAF 179
D ++ ++F +F++D+ EL G++ +C N + H+ GNVYV + E +A A
Sbjct: 70 ---DPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAAL 126
Query: 180 YALTGRFYGGKQIRGQFCNVPLWSKAMC 207
AL GRFY G+ I F V + +A C
Sbjct: 127 QALQGRFYSGRPIIADFSPVTDFREATC 154
>sp|Q94535|U2AF1_DROME Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster
GN=U2af38 PE=1 SV=2
Length = 264
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 3/149 (2%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H KP+ S+T+LL N + + KS N
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVAN 70
Query: 120 LEFDETEMHKYFVEFYDDVLPELRS-LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ + EM +++ F++DV E G++ + VC N HL GNVY+ + NE +A +A
Sbjct: 71 VS--DEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKA 128
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++GG+ + + V + +A C
Sbjct: 129 ANDLNNRWFGGRPVYSELSPVTDFREACC 157
>sp|Q9D883|U2AF1_MOUSE Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=1
SV=4
Length = 239
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 5/149 (3%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H KP+ S+T+ L N + + ++S +
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSA----DGLR 66
Query: 120 LEFDETEMHKYFVEFYDDVLPEL-RSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ EM +++ EF+++V E+ G+V + VC N HL GNVYV + E +A +A
Sbjct: 67 CAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKA 126
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++ G+ I + V + +A C
Sbjct: 127 VIDLNNRWFNGQPIHAELSPVTDFREACC 155
>sp|Q01081|U2AF1_HUMAN Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1
SV=3
Length = 240
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 5/149 (3%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H KP+ S+T+ L N + + ++S +
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSA----DGLR 66
Query: 120 LEFDETEMHKYFVEFYDDVLPEL-RSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ EM +++ EF+++V E+ G+V + VC N HL GNVYV + E +A +A
Sbjct: 67 CAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKA 126
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++ G+ I + V + +A C
Sbjct: 127 VIDLNNRWFNGQPIHAELSPVTDFREACC 155
>sp|A1A4K8|U2AF1_BOVIN Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2
SV=1
Length = 237
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 5/149 (3%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H KP+ S+T+ L N + + ++S +
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSA----DGLR 66
Query: 120 LEFDETEMHKYFVEFYDDVLPEL-RSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ EM +++ EF+++V E+ G+V + VC N HL GNVYV + E +A +A
Sbjct: 67 CAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKA 126
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++ G+ I + V + +A C
Sbjct: 127 VIDLNNRWFNGQPIHAELSPVTDFREACC 155
>sp|Q09176|U2AF1_SCHPO Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAP8A3.06 PE=1 SV=2
Length = 216
Score = 87.4 bits (215), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 74/148 (50%), Gaps = 9/148 (6%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR + CSR H+KP+ S+T+L N + + + +
Sbjct: 11 TEQDKVNCSFYYKIGACRHGERCSRKHVKPNFSQTILCPNMYKNPIHEPNGKK------- 63
Query: 120 LEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAF 179
F + E+ + F FY+D+ E G+V Q VC N HL GNVYV + E A A
Sbjct: 64 --FTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAI 121
Query: 180 YALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R+Y + + + V + +A C
Sbjct: 122 DDLNSRWYSQRPVYAELSPVTDFREACC 149
>sp|Q3T127|U2AF4_BOVIN Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2
SV=1
Length = 220
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 5/149 (3%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H KP+ S+T++L N + + ++ + +
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYR----NPQNTAQTADGSH 66
Query: 120 LEFDETEMHKYFVEFYDDVLPELR-SLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ E+ +++ F+++V EL+ G++ + VC N HL GNVYV + E +A RA
Sbjct: 67 CHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERA 126
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++ G+ + + V + ++ C
Sbjct: 127 VVELNNRWFNGQAVHAELSPVTDFRESCC 155
>sp|Q8WU68|U2AF4_HUMAN Splicing factor U2AF 26 kDa subunit OS=Homo sapiens GN=U2AF1L4 PE=1
SV=2
Length = 220
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 81/149 (54%), Gaps = 5/149 (3%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+G CR D CSR H KP+ S+T++L N + + ++ + +
Sbjct: 11 TEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQTIVLLNLYR----NPQNTAQTADGSH 66
Query: 120 LEFDETEMHKYFVEFYDDVLPELR-SLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ E+ +++ F+++V EL+ G++ + VC N HL GNVYV + E + RA
Sbjct: 67 CHVSDVEVQEHYDSFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERA 126
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L+ R++ G+ + G+ V + ++ C
Sbjct: 127 VAELSNRWFNGQAVHGELSPVTDFRESCC 155
>sp|Q7TP17|U2AF4_RAT Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4
PE=2 SV=1
Length = 220
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 5/149 (3%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H KP+ S+T++L N + + ++ + +
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLY----RNPQNTAQTADGSH 66
Query: 120 LEFDETEMHKYFVEFYDDVLPELR-SLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ E+ +++ F+++V EL+ G++ + VC N HL GNVYV + E +A RA
Sbjct: 67 CHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERA 126
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++ G+ + + V + ++ C
Sbjct: 127 VAELNNRWFNGQAVHAELSPVTDFRESCC 155
>sp|Q8BGJ9|U2AF4_MOUSE Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1
SV=1
Length = 220
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 5/149 (3%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H KP+ S+T++L N + + ++ + +
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLY----RNPQNTAQTADGSH 66
Query: 120 LEFDETEMHKYFVEFYDDVLPELR-SLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ E+ +++ F+++V EL+ G++ + VC N HL GNVYV + E +A RA
Sbjct: 67 CHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERA 126
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++ G+ + + V + ++ C
Sbjct: 127 VAELNNRWFNGQAVHAELSPVTDFRESCC 155
>sp|Q29350|U2AF1_PIG Splicing factor U2AF 35 kDa subunit (Fragment) OS=Sus scrofa
GN=U2AF1 PE=2 SV=3
Length = 82
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFF-----THLSMDNKSVREY 114
T+ DK C FY K+GACR D CSR H KP+ S+T++L N + T + D
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVS 70
Query: 115 DTDINLEFD 123
D ++ +D
Sbjct: 71 DVEVQEHYD 79
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 38.9 bits (89), Expect = 0.022, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 136 DDVLPELRS-LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQI 192
D+ L E+ S G VT KV N RG +V+YSN EALRA + G+ G K +
Sbjct: 345 DEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPL 402
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 132 VEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQ 191
E DDV+ E G V V N + +GNVYV + A+ A AL GR++ GK
Sbjct: 438 TEIKDDVIEECNKHGGVIHIYVDKNSA---QGNVYVKCPSIAAAIAAVNALHGRWFAGKM 494
Query: 192 IRGQFCNVPLW 202
I + +P +
Sbjct: 495 ITAAYVPLPTY 505
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 132 VEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQ 191
E DDV+ E G V V N + +GNVYV + A+ A AL GR++ GK
Sbjct: 444 TEIKDDVIEECNKHGGVIHIYVDKNSA---QGNVYVKCPSIAAAIAAVNALHGRWFAGKM 500
Query: 192 IRGQFCNVPLW 202
I + +P +
Sbjct: 501 ITAAYVPLPTY 511
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 132 VEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQ 191
E DDV+ E G V V N + +GNVYV + A+ A AL GR++ GK
Sbjct: 444 TEIKDDVIEECNKHGGVIHIYVDKNSA---QGNVYVKCPSIAAAIAAVNALHGRWFAGKM 500
Query: 192 IRGQFCNVPLW 202
I + +P +
Sbjct: 501 ITAAYVPLPTY 511
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 35.4 bits (80), Expect = 0.24, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 136 DDVLPELRS-LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQI 192
D+ L E+ S G VT KV N RG +V+YSN EAL A + G+ G K +
Sbjct: 355 DEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPL 412
>sp|Q2QTY2|C3H65_ORYSJ Zinc finger CCCH domain-containing protein 65 OS=Oryza sativa
subsp. japonica GN=Os12g0278800 PE=2 SV=1
Length = 529
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 57 NVETKPDKELCPFYSKVGACRFFDHCSRNH-----IKPSVSKTLLLNNFFT 102
+ KPD+ +C +Y + G C+F C+ NH P+ LL + T
Sbjct: 473 GLPIKPDQPVCTYYGRYGVCKFGPACAYNHPFNFSPVPAAGPPLLPAQYPT 523
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 57 NVETKPDKELCPFYSKVGACRFFDHCSRNHIKPS 90
+ +P ++ CP+Y + G+C++ +C +H PS
Sbjct: 281 GLPLRPGEKECPYYMRTGSCKYATNCKFHHPDPS 314
>sp|Q9C7P4|C3H9_ARATH Putative zinc finger CCCH domain-containing protein 9
OS=Arabidopsis thaliana GN=At1g29570 PE=4 SV=1
Length = 321
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHI--KPS-----VSKTLLLNNFFTHLSMD---NK 109
+P K+ C FY K G CR+ C NH +P + K ++ N + D ++
Sbjct: 54 VRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRNVAEPMYQDWRESE 113
Query: 110 SVREYDTDINLEF-DETEMHKYFVEFYDDVLPELRS 144
S R +D F DE +Y +E Y PE RS
Sbjct: 114 SERRFDERTQRTFGDERTQRRYGIE-YSGARPEKRS 148
>sp|Q9WVE9|ITSN1_RAT Intersectin-1 OS=Rattus norvegicus GN=Itsn1 PE=1 SV=1
Length = 1217
Score = 35.4 bits (80), Expect = 0.30, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 5 EEWEKEQKRLRDIEEKNRQEKEEREAQEKEFKKSIE 40
E+ KEQ+RL +E + QE++ERE QE+E K+ +E
Sbjct: 373 EQQRKEQERLAQLE-RAEQERKERERQEQERKRQLE 407
>sp|Q9Z0R4|ITSN1_MOUSE Intersectin-1 OS=Mus musculus GN=Itsn1 PE=1 SV=2
Length = 1714
Score = 35.0 bits (79), Expect = 0.32, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 5 EEWEKEQKRLRDIEEKNRQEKEEREAQEKEFKKSIE 40
E+ KEQ+RL +E + QE++ERE QE+E K+ +E
Sbjct: 373 EQQRKEQERLAQLE-RAEQERKERERQEQERKRQLE 407
>sp|Q15811|ITSN1_HUMAN Intersectin-1 OS=Homo sapiens GN=ITSN1 PE=1 SV=3
Length = 1721
Score = 35.0 bits (79), Expect = 0.32, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 5 EEWEKEQKRLRDIEEKNRQEKEEREAQEKEFKKSIE 40
E+ KEQ+RL +E + QE++ERE QE+E K+ +E
Sbjct: 374 EQQRKEQERLAQLE-RAEQERKERERQEQERKRQLE 408
>sp|Q9DFG8|MKRN2_DANRE Probable E3 ubiquitin-protein ligase makorin-2 OS=Danio rerio
GN=mkrn2 PE=2 SV=2
Length = 414
Score = 34.7 bits (78), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 42 FIEGVCNELPDG-FRTNVETKPDKELCPFYSKVGACRFFDHCSRNHIKP 89
F+ GVC E F ++ T +C +Y + GAC + D C +HIKP
Sbjct: 11 FLHGVCREGSRCLFSHDLTTSKPSTICKYYQR-GACAYGDRCRYDHIKP 58
>sp|Q2GZN9|NST1_CHAGB Stress response protein NST1 OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=NST1 PE=3 SV=1
Length = 1255
Score = 34.3 bits (77), Expect = 0.60, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 4 QEEWEKEQKRLRDIEEKNRQEKEEREAQEKEFKKSIED 41
+E KE +RLR I+++ E++ REA+E+E KK+ E+
Sbjct: 643 EERQRKEAERLRKIQDREEAERKAREARERE-KKTREE 679
>sp|Q75CK5|NST1_ASHGO Stress response protein NST1 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NST1 PE=3
SV=2
Length = 1207
Score = 33.9 bits (76), Expect = 0.79, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 8 EKEQKRLRDIEEKNRQEKEEREAQEKEFKK 37
++E KR RD E K R+E++ + QEKE KK
Sbjct: 679 KEEIKRKRDQERKQREEEQRKRKQEKELKK 708
>sp|Q9U1M8|MYOI_DICDI Myosin-I heavy chain OS=Dictyostelium discoideum GN=myoI PE=1 SV=1
Length = 2357
Score = 33.9 bits (76), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 10 EQKRLRDIEEKNRQEKEEREAQEKEFK 36
E +R +D EE+NRQEKEER+ QEKE K
Sbjct: 796 EIQREKDEEERNRQEKEERDRQEKEDK 822
>sp|Q5RJC5|C3H67_ARATH Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis
thaliana GN=At5g63260 PE=2 SV=2
Length = 435
Score = 33.5 bits (75), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 57 NVETKPDKELCPFYSKVGACRFFDHCSRNHIKPSV 91
+ +P ++ CPFY + G+C+F C NH P+
Sbjct: 190 GLPIRPGEKECPFYMRNGSCKFGSDCKFNHPDPTA 224
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 61 KPDKELCPFYSKVGACRF-----FDHCSRNHIKPSVSKTL 95
+PD+ +C YS+ G C+F FDH PS S+T+
Sbjct: 380 RPDQSMCTHYSRYGICKFGPACRFDHSIPPTFSPSSSQTV 419
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 61 KPDKELCPFYSKVGACRFFDHCSRNH 86
+PD E C FY + G+C++ C NH
Sbjct: 101 RPDSEDCSFYMRTGSCKYGSSCKFNH 126
>sp|Q5ZDJ6|C3H8_ORYSJ Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp.
japonica GN=Os01g0616400 PE=2 SV=2
Length = 462
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 58 VETKPDKELCPFYSKVGACRFFDHCSRNHIK 88
+ +P + LC FY+K G C+F C NH K
Sbjct: 206 LPVRPSEPLCSFYAKTGKCKFRAMCKFNHPK 236
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 59 ETKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDN 108
E +PD CPF+ K G C+F C NH K V+ N HL D+
Sbjct: 157 EGEPD---CPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADS 203
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 57 NVETKPDKELCPFYSKVGACRFFDHCSRNH 86
+ +P + CPFY K+G+C+F C NH
Sbjct: 284 GLPMRPGEVDCPFYMKMGSCKFGSTCRFNH 313
>sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplastic
OS=Arabidopsis thaliana GN=DRT111 PE=2 SV=2
Length = 387
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 133 EFYDDVLPELRSLGQVTQ---FKVCCNKSP-HLRGNVYVSYSNEREALRAFYALTGRFYG 188
E D+V E G VT+ F++ P H ++V +S E +A L GR++G
Sbjct: 299 ELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGRYFG 358
Query: 189 GKQIRGQF 196
G+ +R F
Sbjct: 359 GRTVRATF 366
>sp|Q1ZXC2|PAP1B_DICDI Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum
GN=pabpc1B PE=3 SV=1
Length = 814
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQ 195
D + E G + K+ +++ +G ++S+S +EA +A +L G +G KQI+
Sbjct: 484 DLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVS 543
Query: 196 FCN 198
F N
Sbjct: 544 FSN 546
>sp|C4L8X4|IF2_TOLAT Translation initiation factor IF-2 OS=Tolumonas auensis (strain DSM
9187 / TA4) GN=infB PE=3 SV=1
Length = 910
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 4 QEEWEKEQKRLRDIEEKNRQEKEEREAQEKEFKKSIEDFIEGVCNELPDGFRTNVETKPD 63
QEE K ++ +D E K R+E EE+ +E E +K + + PD V+ + D
Sbjct: 123 QEELAKAEQARKDAEAKARKEAEEKARKEAEARKQSTEAAADDAAKSPDEKARKVKAEAD 182
Query: 64 K 64
K
Sbjct: 183 K 183
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 144 SLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQI 192
S G + KV + S +G +V Y+NE A +A L G KQ+
Sbjct: 146 SFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV 194
>sp|Q2H922|PAN1_CHAGB Actin cytoskeleton-regulatory complex protein PAN1 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=PAN1 PE=3 SV=1
Length = 1450
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 8 EKEQKRLRDIEEKNRQEKEEREAQEKEFKKSIEDFIEGVCNELPDG 53
+ +KRL + K R EKE E ++ + S+ DF +G+ + L +G
Sbjct: 790 QDAEKRLEEESIKARTEKENNERMVRDVEDSVRDFAKGIEDNLKEG 835
>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp.
japonica GN=Os01g0257400 PE=2 SV=1
Length = 466
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 61 KPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINL 120
+P + +C +Y K G C+F +C +H + + ++LN+ L K Y +
Sbjct: 101 RPGQPVCEYYMKNGTCKFGSNCKYDHPREGSVQAVMLNSSGYPLRSGEKDCTYYVKTGHC 160
Query: 121 EFDET 125
+F T
Sbjct: 161 KFGST 165
>sp|Q4WJQ1|EIF3A_ASPFU Eukaryotic translation initiation factor 3 subunit A OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=tif32 PE=3 SV=2
Length = 1051
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 9/45 (20%)
Query: 2 LIQEEWEKEQKRLRDIEEKNRQEKEEREAQEKEFKKSIEDFIEGV 46
L+ E+ E+E+KRLRD +E+ RQ+ E KK +E+ GV
Sbjct: 648 LLDEQREREKKRLRDEQERIRQQ---------ELKKQLEELKSGV 683
>sp|B0XP13|EIF3A_ASPFC Eukaryotic translation initiation factor 3 subunit A OS=Neosartorya
fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
GN=tif32 PE=3 SV=1
Length = 1051
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 9/45 (20%)
Query: 2 LIQEEWEKEQKRLRDIEEKNRQEKEEREAQEKEFKKSIEDFIEGV 46
L+ E+ E+E+KRLRD +E+ RQ+ E KK +E+ GV
Sbjct: 648 LLDEQREREKKRLRDEQERIRQQ---------ELKKQLEELKSGV 683
>sp|Q811B5|PRR3_MOUSE Proline-rich protein 3 OS=Mus musculus GN=Prr3 PE=2 SV=1
Length = 190
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 58 VETKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLL 96
+E K D+ +C +SK G CR+ DHC+ H P V+ L
Sbjct: 154 MEDKSDRPVCRHFSKKGHCRYEDHCAFYH--PGVNGPPL 190
>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa
subsp. japonica GN=Os12g0405100 PE=2 SV=1
Length = 454
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 61 KPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFT 102
+P+++ C +Y + G C+F C +H +PS + + N+ ++
Sbjct: 157 RPNEKECAYYLRTGQCKFASTCKFHHPQPSNTMVAVRNSMYS 198
>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa
subsp. japonica GN=Os01g0917400 PE=2 SV=2
Length = 439
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 57 NVETKPDKELCPFYSKVGACRFFDHCSRNH 86
+ +P +ELC FYS+ G C+F +C +H
Sbjct: 374 GLPLRPGEELCKFYSRYGICKFGANCKFDH 403
>sp|Q9LW85|MFP1_ARATH MAR-binding filament-like protein 1 OS=Arabidopsis thaliana GN=MFP1
PE=1 SV=2
Length = 726
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 33/198 (16%)
Query: 2 LIQEEWEKEQKRL-RDIE-EKNRQEKEERE-AQEKEFKKSIEDFIEGVCNELPDGFRTNV 58
++ EEW++ ++R R+++ EK + E E A EK+ ++ ++D +EGV +EL + N
Sbjct: 480 IVHEEWKEAKERYERNLDAEKQKNEISASELALEKDLRRRVKDELEGVTHELKESSVKNQ 539
Query: 59 ETKPDKELCPFYSKV-GACRFFDH-----CSRNHIKPSVSKTLLL-----NNFFTHLSMD 107
+ KEL Y KV + + + S N + K +L+ + T L
Sbjct: 540 SLQ--KELVEIYKKVETSNKELEEEKKTVLSLNKEVKGMEKQILMEREARKSLETDLEEA 597
Query: 108 NKSVREYDTDINL---EFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGN 164
KS+ E + + ++ E ++ H +E +VL RSLG+ N S + N
Sbjct: 598 VKSLDEMNKNTSILSRELEKVNTHASNLEDEKEVLQ--RSLGE------AKNASKEAKEN 649
Query: 165 V------YVSYSNEREAL 176
V +S ERE L
Sbjct: 650 VEDAHILVMSLGKEREVL 667
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 114 YDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNER 173
Y ++N+ E E+ K+F + G +T K+ C++ +G +V +S
Sbjct: 307 YVKNVNVAVTEEELRKHFSQ-----------CGTITSTKLMCDEKGKSKGFGFVCFSTPE 355
Query: 174 EALRAFYALTGRFYGGKQI 192
EA+ A G+ + GK +
Sbjct: 356 EAIDAVKTFHGQMFHGKPL 374
>sp|Q6MG07|PRR3_RAT Proline-rich protein 3 OS=Rattus norvegicus GN=Prr3 PE=2 SV=1
Length = 186
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 58 VETKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLL 96
+E K D+ +C +SK G CR+ DHC+ H P V+ L
Sbjct: 150 MEDKSDRPVCRHFSKKGHCRYEDHCAFYH--PGVNGPPL 186
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,922,169
Number of Sequences: 539616
Number of extensions: 3542588
Number of successful extensions: 37170
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 196
Number of HSP's that attempted gapping in prelim test: 31142
Number of HSP's gapped (non-prelim): 5060
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)