Query psy16559
Match_columns 207
No_of_seqs 259 out of 871
Neff 5.5
Searched_HMMs 46136
Date Sat Aug 17 00:16:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2202|consensus 100.0 7.2E-54 1.6E-58 371.3 2.9 151 53-207 4-155 (260)
2 TIGR01645 half-pint poly-U bin 99.9 3E-23 6.5E-28 200.1 10.4 97 85-205 507-608 (612)
3 KOG0147|consensus 99.8 8.1E-21 1.8E-25 178.7 6.4 92 90-204 441-532 (549)
4 TIGR01622 SF-CC1 splicing fact 99.8 2.9E-19 6.2E-24 164.6 10.6 100 85-206 355-454 (457)
5 KOG1548|consensus 99.7 6.2E-18 1.3E-22 152.6 10.0 95 88-203 261-356 (382)
6 TIGR01642 U2AF_lg U2 snRNP aux 99.7 1.7E-16 3.7E-21 147.9 9.9 95 91-204 408-506 (509)
7 smart00361 RRM_1 RNA recogniti 99.6 9.4E-16 2E-20 108.8 8.7 63 133-195 4-70 (70)
8 KOG0120|consensus 99.6 6.4E-16 1.4E-20 146.1 7.6 94 92-204 399-496 (500)
9 KOG0124|consensus 99.6 3.3E-15 7.1E-20 136.5 7.8 96 86-205 440-540 (544)
10 KOG1996|consensus 99.6 2E-15 4.3E-20 134.5 6.0 89 92-204 281-371 (378)
11 PF13893 RRM_5: RNA recognitio 99.5 2.4E-13 5.2E-18 91.8 8.2 56 138-197 1-56 (56)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 3.8E-11 8.1E-16 106.8 11.0 65 136-200 284-349 (352)
13 PLN03134 glycine-rich RNA-bind 99.1 5.9E-10 1.3E-14 90.1 10.3 63 136-198 49-112 (144)
14 PF00076 RRM_1: RNA recognitio 99.1 8.3E-10 1.8E-14 75.5 8.0 58 136-193 13-70 (70)
15 smart00362 RRM_2 RNA recogniti 99.1 1.8E-09 4E-14 72.1 9.1 58 136-194 14-71 (72)
16 PF14259 RRM_6: RNA recognitio 99.0 2.6E-09 5.6E-14 74.2 7.7 58 136-193 13-70 (70)
17 smart00360 RRM RNA recognition 99.0 4.7E-09 1E-13 69.7 8.0 59 136-194 11-70 (71)
18 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.9 4.6E-09 1E-13 93.4 10.1 63 136-198 18-81 (352)
19 KOG0107|consensus 98.9 2.3E-09 4.9E-14 89.9 6.1 60 136-199 25-84 (195)
20 cd00590 RRM RRM (RNA recogniti 98.9 2.2E-08 4.8E-13 67.1 8.8 61 136-196 14-74 (74)
21 TIGR01659 sex-lethal sex-letha 98.8 1.6E-08 3.5E-13 92.5 10.1 63 136-198 122-185 (346)
22 TIGR01628 PABP-1234 polyadenyl 98.8 1.6E-08 3.5E-13 96.3 10.1 64 136-199 300-363 (562)
23 KOG4207|consensus 98.8 4.8E-09 1E-13 90.2 5.4 62 136-197 28-90 (256)
24 KOG0127|consensus 98.8 2.5E-08 5.5E-13 95.3 8.7 68 136-203 132-200 (678)
25 KOG0148|consensus 98.8 1.2E-08 2.6E-13 90.6 5.9 62 136-197 77-139 (321)
26 KOG0122|consensus 98.7 7.2E-08 1.6E-12 84.5 9.7 64 136-199 204-268 (270)
27 KOG0114|consensus 98.7 1.3E-07 2.8E-12 73.8 8.8 82 87-199 13-94 (124)
28 PLN03120 nucleic acid binding 98.7 1.3E-07 2.8E-12 83.7 9.9 60 136-198 19-78 (260)
29 TIGR01628 PABP-1234 polyadenyl 98.6 1.4E-07 3E-12 89.9 9.9 63 136-198 15-78 (562)
30 TIGR01645 half-pint poly-U bin 98.6 2.9E-07 6.2E-12 89.9 12.1 61 136-196 122-183 (612)
31 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.6 1.5E-07 3.1E-12 88.9 9.8 58 136-198 17-76 (481)
32 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.6 2E-07 4.3E-12 88.0 10.2 60 136-199 291-350 (481)
33 TIGR01622 SF-CC1 splicing fact 98.6 3.1E-07 6.8E-12 84.9 10.8 63 136-198 201-264 (457)
34 TIGR01642 U2AF_lg U2 snRNP aux 98.6 3.8E-07 8.3E-12 85.3 10.8 63 136-198 310-373 (509)
35 TIGR01648 hnRNP-R-Q heterogene 98.5 5E-07 1.1E-11 87.8 9.7 56 136-198 248-305 (578)
36 TIGR01659 sex-lethal sex-letha 98.5 6E-07 1.3E-11 82.2 8.8 64 136-199 208-274 (346)
37 COG0724 RNA-binding proteins ( 98.5 7.4E-07 1.6E-11 72.5 8.0 63 136-198 130-193 (306)
38 KOG0125|consensus 98.4 5.7E-07 1.2E-11 81.7 6.4 61 136-197 111-171 (376)
39 KOG0108|consensus 98.4 1.5E-06 3.3E-11 81.9 9.0 65 136-200 33-98 (435)
40 TIGR01648 hnRNP-R-Q heterogene 98.4 2.3E-06 4.9E-11 83.3 10.2 62 136-197 73-135 (578)
41 KOG0113|consensus 98.3 2.2E-06 4.8E-11 77.1 7.7 61 136-196 116-177 (335)
42 KOG0148|consensus 98.2 2.8E-06 6E-11 75.8 7.1 59 136-199 179-237 (321)
43 PLN03121 nucleic acid binding 98.2 8.7E-06 1.9E-10 71.5 10.1 60 136-198 20-79 (243)
44 KOG0123|consensus 98.2 4.7E-06 1E-10 77.1 7.6 66 136-203 91-156 (369)
45 PLN03213 repressor of silencin 98.1 8.9E-06 1.9E-10 77.7 7.6 59 136-197 25-85 (759)
46 KOG0121|consensus 98.1 1.1E-05 2.4E-10 65.2 7.0 62 136-197 51-113 (153)
47 KOG0127|consensus 98.1 1.3E-05 2.8E-10 77.1 8.5 89 80-197 277-375 (678)
48 KOG0130|consensus 98.1 6.2E-06 1.4E-10 67.2 4.9 64 136-199 87-151 (170)
49 KOG4206|consensus 98.0 2.2E-05 4.8E-10 68.0 8.3 62 136-199 28-89 (221)
50 KOG0123|consensus 98.0 1.4E-05 2.9E-10 74.0 6.7 61 136-198 13-73 (369)
51 KOG0153|consensus 98.0 3.2E-05 7E-10 70.8 8.8 117 65-199 162-302 (377)
52 KOG0105|consensus 97.8 5.1E-05 1.1E-09 64.8 6.7 60 137-198 22-81 (241)
53 COG5175 MOT2 Transcriptional r 97.8 3.8E-05 8.1E-10 70.6 6.1 57 142-198 141-201 (480)
54 KOG0145|consensus 97.8 0.00012 2.6E-09 65.3 9.1 85 86-198 34-119 (360)
55 KOG0109|consensus 97.8 2.4E-05 5.2E-10 70.4 4.6 56 136-198 93-148 (346)
56 KOG0144|consensus 97.8 2.5E-05 5.5E-10 73.3 4.4 64 136-199 139-205 (510)
57 KOG4208|consensus 97.8 7.6E-05 1.6E-09 64.2 6.8 59 142-200 70-130 (214)
58 KOG4660|consensus 97.6 3.5E-05 7.6E-10 73.9 3.3 54 136-193 90-143 (549)
59 PF00642 zf-CCCH: Zinc finger 97.6 1.3E-05 2.8E-10 47.5 0.2 25 63-87 2-26 (27)
60 KOG0110|consensus 97.6 0.00017 3.7E-09 71.0 7.6 68 131-198 525-596 (725)
61 KOG0145|consensus 97.6 0.00024 5.2E-09 63.5 7.1 61 138-198 295-356 (360)
62 KOG0149|consensus 97.5 0.00016 3.4E-09 63.4 5.5 63 136-199 27-90 (247)
63 KOG0117|consensus 97.5 0.00027 5.7E-09 66.8 7.0 62 136-197 98-161 (506)
64 KOG0126|consensus 97.4 2.3E-05 4.9E-10 66.7 -0.9 62 136-197 50-112 (219)
65 KOG0117|consensus 97.4 0.00054 1.2E-08 64.7 7.6 55 136-197 274-328 (506)
66 KOG0124|consensus 97.3 0.00025 5.5E-09 65.8 4.7 61 136-196 128-189 (544)
67 KOG0131|consensus 97.3 0.00035 7.6E-09 59.3 4.7 61 138-198 26-87 (203)
68 KOG0146|consensus 97.2 0.00064 1.4E-08 61.0 5.3 63 136-198 34-99 (371)
69 KOG0111|consensus 97.1 0.00043 9.4E-09 60.6 3.7 60 142-201 31-91 (298)
70 KOG0415|consensus 97.1 0.0038 8.3E-08 58.0 9.8 66 136-201 254-321 (479)
71 KOG0131|consensus 97.1 0.001 2.2E-08 56.6 5.5 59 141-199 116-176 (203)
72 KOG4661|consensus 97.1 0.0011 2.4E-08 64.6 6.1 62 136-197 420-482 (940)
73 KOG0144|consensus 97.0 0.0015 3.2E-08 61.8 5.9 63 136-198 49-115 (510)
74 KOG0110|consensus 96.9 0.0011 2.4E-08 65.5 4.8 69 133-201 625-694 (725)
75 PF05172 Nup35_RRM: Nup53/35/4 96.9 0.0036 7.7E-08 48.2 6.5 61 136-197 20-89 (100)
76 KOG2314|consensus 96.9 0.0015 3.2E-08 63.5 5.0 55 136-190 79-133 (698)
77 smart00356 ZnF_C3H1 zinc finge 96.8 0.00075 1.6E-08 38.9 1.8 22 65-87 5-26 (27)
78 KOG4212|consensus 96.7 0.0035 7.6E-08 59.5 6.5 58 136-197 551-608 (608)
79 KOG4209|consensus 96.7 0.0015 3.2E-08 57.0 3.5 61 136-197 116-177 (231)
80 KOG0147|consensus 96.7 0.0028 6.1E-08 61.1 5.6 63 135-197 292-355 (549)
81 PF14605 Nup35_RRM_2: Nup53/35 96.6 0.0062 1.3E-07 41.3 5.3 39 136-179 15-53 (53)
82 KOG0132|consensus 96.5 0.008 1.7E-07 60.3 7.4 57 136-197 436-492 (894)
83 KOG4212|consensus 96.4 0.0094 2E-07 56.7 6.8 57 143-199 67-123 (608)
84 KOG1190|consensus 96.2 0.027 5.8E-07 53.2 8.7 61 137-201 314-374 (492)
85 KOG0146|consensus 96.1 0.0051 1.1E-07 55.3 3.5 63 136-198 300-363 (371)
86 PF08952 DUF1866: Domain of un 96.0 0.043 9.2E-07 45.1 8.1 62 133-203 48-109 (146)
87 KOG4454|consensus 95.9 0.0065 1.4E-07 53.2 2.9 57 143-200 31-87 (267)
88 KOG2416|consensus 95.7 0.0057 1.2E-07 59.8 2.2 78 91-202 443-524 (718)
89 KOG0106|consensus 95.5 0.011 2.3E-07 51.4 3.0 56 136-198 16-71 (216)
90 PF08777 RRM_3: RNA binding mo 95.5 0.026 5.7E-07 43.4 4.7 56 136-196 16-76 (105)
91 KOG0533|consensus 95.4 0.064 1.4E-06 47.4 7.4 65 136-200 98-162 (243)
92 PF11608 Limkain-b1: Limkain b 95.3 0.032 7E-07 42.1 4.5 55 137-200 22-77 (90)
93 PF15519 RBM39linker: linker b 95.3 0.0095 2.1E-07 43.3 1.5 17 88-104 50-66 (73)
94 KOG0226|consensus 95.2 0.016 3.5E-07 51.6 3.2 54 142-195 211-265 (290)
95 KOG4285|consensus 94.9 0.058 1.3E-06 49.2 5.7 51 137-193 212-262 (350)
96 PF04059 RRM_2: RNA recognitio 94.9 0.18 4E-06 38.5 7.7 44 145-188 27-71 (97)
97 KOG0109|consensus 94.8 0.058 1.3E-06 49.0 5.6 56 137-199 18-73 (346)
98 PF15023 DUF4523: Protein of u 94.8 0.12 2.7E-06 42.6 6.9 55 136-197 105-159 (166)
99 KOG1677|consensus 94.7 0.016 3.5E-07 51.9 1.8 29 62-90 175-203 (332)
100 KOG1548|consensus 94.2 0.28 6E-06 45.6 8.5 62 136-197 149-218 (382)
101 KOG0106|consensus 93.7 0.042 9.1E-07 47.8 2.2 55 136-197 114-168 (216)
102 PF04847 Calcipressin: Calcipr 93.7 0.31 6.7E-06 41.2 7.4 61 137-202 11-73 (184)
103 KOG2068|consensus 93.7 0.025 5.5E-07 51.8 0.8 56 142-197 101-160 (327)
104 KOG0151|consensus 93.3 0.63 1.4E-05 46.9 9.8 62 136-197 189-254 (877)
105 KOG0116|consensus 90.9 0.44 9.4E-06 45.2 5.3 60 136-196 303-363 (419)
106 KOG1855|consensus 90.6 0.33 7.2E-06 46.2 4.2 49 135-183 245-307 (484)
107 KOG1190|consensus 90.0 0.69 1.5E-05 43.9 5.7 60 139-202 168-230 (492)
108 KOG1456|consensus 89.2 0.98 2.1E-05 42.6 6.1 60 138-201 139-200 (494)
109 KOG4205|consensus 89.1 0.42 9.1E-06 43.6 3.6 60 136-196 112-172 (311)
110 PF11767 SET_assoc: Histone ly 88.7 1.9 4.1E-05 30.8 6.0 50 136-193 15-64 (66)
111 KOG4205|consensus 88.1 0.38 8.2E-06 43.9 2.6 59 136-195 21-80 (311)
112 KOG4210|consensus 87.2 0.35 7.6E-06 43.5 1.8 65 136-201 200-265 (285)
113 KOG2202|consensus 86.7 0.53 1.1E-05 42.0 2.6 61 35-97 122-183 (260)
114 KOG4211|consensus 85.9 2.8 6.1E-05 40.5 7.2 34 147-181 35-68 (510)
115 KOG1457|consensus 84.1 1.7 3.8E-05 38.5 4.5 36 163-198 78-116 (284)
116 KOG4211|consensus 83.8 6.1 0.00013 38.3 8.4 65 137-202 119-184 (510)
117 KOG4307|consensus 80.3 3.7 8E-05 41.6 5.7 61 136-196 882-943 (944)
118 KOG1995|consensus 79.5 1.9 4.1E-05 40.1 3.3 48 150-197 103-151 (351)
119 PF07576 BRAP2: BRCA1-associat 78.2 6.3 0.00014 30.7 5.4 43 146-189 39-81 (110)
120 KOG0120|consensus 78.0 2.6 5.6E-05 41.0 3.8 63 136-198 304-367 (500)
121 KOG3152|consensus 77.3 1.8 3.9E-05 38.8 2.4 56 137-192 90-158 (278)
122 COG5152 Uncharacterized conser 76.6 1.1 2.3E-05 39.0 0.8 46 51-98 128-175 (259)
123 KOG0128|consensus 76.0 1.4 3.1E-05 45.0 1.5 56 136-192 682-739 (881)
124 PF14608 zf-CCCH_2: Zinc finge 75.9 2 4.3E-05 23.3 1.4 18 67-87 2-19 (19)
125 PF03439 Spt5-NGN: Early trans 75.6 4.7 0.0001 29.5 3.9 38 147-188 33-70 (84)
126 KOG0128|consensus 74.7 1.2 2.7E-05 45.4 0.8 64 136-199 751-814 (881)
127 KOG1456|consensus 72.9 12 0.00027 35.5 6.7 60 136-199 303-362 (494)
128 KOG1365|consensus 72.5 2.8 6.1E-05 39.8 2.5 93 83-201 270-363 (508)
129 KOG4676|consensus 69.8 7.8 0.00017 36.9 4.7 62 136-198 22-87 (479)
130 PF03880 DbpA: DbpA RNA bindin 67.6 14 0.0003 26.1 4.7 42 147-196 32-73 (74)
131 KOG0112|consensus 66.1 5.7 0.00012 41.1 3.2 55 138-197 472-528 (975)
132 KOG2591|consensus 65.1 9.7 0.00021 37.7 4.5 61 136-202 190-254 (684)
133 KOG1677|consensus 64.8 2.8 6.1E-05 37.5 0.8 30 63-92 131-161 (332)
134 KOG4206|consensus 62.1 41 0.00089 29.5 7.4 54 136-196 164-218 (221)
135 KOG1813|consensus 58.4 11 0.00024 34.5 3.3 50 49-98 171-220 (313)
136 KOG1040|consensus 56.7 5.1 0.00011 36.9 0.9 24 66-89 107-130 (325)
137 PLN00108 unknown protein; Prov 55.5 25 0.00054 31.5 5.1 81 121-203 43-141 (257)
138 KOG2185|consensus 55.3 5.2 0.00011 38.2 0.8 30 58-88 134-163 (486)
139 KOG0115|consensus 55.2 12 0.00026 33.7 3.0 53 137-189 47-99 (275)
140 COG3309 VapD Uncharacterized v 55.2 21 0.00045 27.3 3.9 62 132-204 22-87 (96)
141 KOG1763|consensus 50.7 12 0.00026 34.3 2.4 32 58-90 86-117 (343)
142 PF08675 RNA_bind: RNA binding 46.9 46 0.00099 25.2 4.5 41 136-183 23-63 (87)
143 PF03468 XS: XS domain; Inter 46.5 43 0.00093 26.2 4.6 39 136-176 32-70 (116)
144 KOG4574|consensus 45.8 15 0.00033 38.1 2.4 61 137-202 314-376 (1007)
145 PF08544 GHMP_kinases_C: GHMP 45.5 53 0.0012 22.7 4.6 48 135-186 36-83 (85)
146 KOG2333|consensus 45.2 16 0.00034 35.9 2.3 75 16-90 49-142 (614)
147 KOG4213|consensus 44.7 51 0.0011 28.4 5.1 50 132-183 120-171 (205)
148 PF01086 Clathrin_lg_ch: Clath 44.7 71 0.0015 27.6 6.1 41 5-45 115-160 (225)
149 KOG1365|consensus 44.5 32 0.0007 32.9 4.2 35 146-181 191-225 (508)
150 KOG4307|consensus 43.8 14 0.0003 37.7 1.7 62 136-197 449-511 (944)
151 KOG1039|consensus 41.8 13 0.00027 34.7 1.1 25 65-90 9-33 (344)
152 KOG2135|consensus 39.7 22 0.00048 34.6 2.4 58 136-199 388-445 (526)
153 PRK00521 rbfA ribosome-binding 39.7 21 0.00046 27.7 1.9 55 145-202 34-94 (120)
154 PF10309 DUF2414: Protein of u 39.5 1.1E+02 0.0024 21.5 5.4 18 165-182 45-62 (62)
155 KOG0804|consensus 38.3 45 0.00097 32.3 4.2 44 145-189 99-142 (493)
156 PTZ00266 NIMA-related protein 36.6 83 0.0018 33.4 6.2 11 91-101 638-648 (1021)
157 PF15513 DUF4651: Domain of un 35.8 99 0.0022 21.9 4.6 23 133-155 6-28 (62)
158 PRK08559 nusG transcription an 35.6 1.2E+02 0.0027 24.4 5.9 33 148-184 36-68 (153)
159 PF11823 DUF3343: Protein of u 34.8 67 0.0015 22.5 3.7 30 163-192 2-31 (73)
160 PLN02435 probable UDP-N-acetyl 34.1 19 0.00041 35.1 1.0 67 131-203 391-472 (493)
161 KOG4019|consensus 33.7 60 0.0013 27.9 3.8 49 144-197 38-87 (193)
162 PRK13817 ribosome-binding fact 33.7 79 0.0017 24.7 4.3 57 144-203 30-91 (119)
163 PF12278 SDP_N: Sex determinat 33.1 1.2E+02 0.0025 25.5 5.3 25 4-28 40-64 (168)
164 KOG1672|consensus 31.3 45 0.00097 29.0 2.7 56 25-81 43-104 (211)
165 PF03763 Remorin_C: Remorin, C 31.0 1.4E+02 0.0029 23.3 5.2 37 5-41 32-70 (111)
166 KOG1999|consensus 30.5 88 0.0019 33.1 5.1 35 159-194 207-241 (1024)
167 PF07530 PRE_C2HC: Associated 29.5 1.2E+02 0.0026 21.4 4.3 58 136-196 2-61 (68)
168 COG5063 CTH1 CCCH-type Zn-fing 29.2 35 0.00076 31.6 1.8 23 66-88 276-298 (351)
169 KOG2891|consensus 29.0 9.2 0.0002 35.1 -1.9 51 138-188 178-248 (445)
170 KOG0129|consensus 28.5 1.7E+02 0.0036 28.9 6.3 72 76-179 243-323 (520)
171 KOG1457|consensus 27.7 1E+02 0.0022 27.6 4.4 47 137-186 226-272 (284)
172 PTZ00399 cysteinyl-tRNA-synthe 27.7 98 0.0021 31.1 4.8 8 49-56 591-598 (651)
173 PF06936 Selenoprotein_S: Sele 27.6 1.4E+02 0.003 25.5 5.1 6 34-39 120-125 (190)
174 KOG1595|consensus 27.0 33 0.00073 33.6 1.4 22 65-87 237-258 (528)
175 PRK06545 prephenate dehydrogen 26.7 1.3E+02 0.0029 27.3 5.2 51 136-187 305-356 (359)
176 COG0858 RbfA Ribosome-binding 26.4 51 0.0011 25.9 2.1 63 138-203 26-95 (118)
177 PF12230 PRP21_like_P: Pre-mRN 26.0 89 0.0019 26.7 3.7 15 4-18 26-40 (229)
178 PTZ00339 UDP-N-acetylglucosami 25.8 53 0.0011 31.9 2.5 67 131-203 382-463 (482)
179 PF10197 Cir_N: N-terminal dom 25.1 1E+02 0.0022 19.4 2.9 9 7-15 14-22 (37)
180 PRK10328 DNA binding protein, 24.5 1.5E+02 0.0033 23.9 4.5 31 19-54 45-75 (134)
181 smart00596 PRE_C2HC PRE_C2HC d 24.1 1.4E+02 0.003 21.6 3.8 59 136-197 2-62 (69)
182 PF13904 DUF4207: Domain of un 23.7 3E+02 0.0065 24.3 6.7 6 5-10 187-192 (264)
183 KOG3323|consensus 23.5 1.9E+02 0.0042 23.8 4.9 51 116-172 91-148 (149)
184 PF03002 Somatostatin: Somatos 23.4 40 0.00088 18.3 0.7 12 62-73 2-14 (18)
185 PF11600 CAF-1_p150: Chromatin 23.2 3.3E+02 0.0072 23.1 6.7 14 62-75 201-214 (216)
186 PF04795 PAPA-1: PAPA-1-like c 23.0 1.6E+02 0.0035 21.9 4.1 18 23-40 20-37 (89)
187 COG4334 Uncharacterized protei 22.8 3.1E+02 0.0066 21.9 5.8 40 162-201 45-88 (131)
188 PF02033 RBFA: Ribosome-bindin 22.8 2.1E+02 0.0045 21.2 4.8 38 144-184 27-65 (104)
189 PRK10947 global DNA-binding tr 22.1 1.7E+02 0.0037 23.6 4.4 33 18-55 44-76 (135)
190 PF09766 FimP: Fms-interacting 21.7 2.6E+02 0.0057 25.8 6.1 17 4-20 95-111 (355)
191 PF01076 Mob_Pre: Plasmid reco 21.5 2.1E+02 0.0045 23.9 5.0 43 122-169 95-141 (196)
192 PF15086 UPF0542: Uncharacteri 21.4 1.7E+02 0.0038 21.4 3.9 22 7-28 42-63 (74)
193 PRK13818 ribosome-binding fact 21.2 76 0.0016 24.9 2.2 56 144-202 30-92 (121)
194 PF05178 Kri1: KRI1-like famil 21.2 2.1E+02 0.0046 21.9 4.5 13 125-137 61-74 (101)
195 KOG2193|consensus 21.2 9.9 0.00021 36.7 -3.3 124 42-199 5-156 (584)
196 smart00738 NGN In Spt5p, this 21.0 64 0.0014 23.5 1.6 23 162-184 59-81 (106)
197 KOG0386|consensus 20.7 1.2E+02 0.0025 32.6 3.8 39 4-42 277-315 (1157)
198 KOG4660|consensus 20.4 99 0.0021 30.6 3.1 31 162-192 431-464 (549)
199 TIGR00082 rbfA ribosome-bindin 20.0 2E+02 0.0044 22.2 4.3 53 147-202 34-92 (114)
No 1
>KOG2202|consensus
Probab=100.00 E-value=7.2e-54 Score=371.30 Aligned_cols=151 Identities=35% Similarity=0.620 Sum_probs=140.4
Q ss_pred hhhcccCCCCCCcccccccccccccccCcccCCCCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHH
Q psy16559 53 GFRTNVETKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFV 132 (207)
Q Consensus 53 ~~~~~~~te~d~~~C~Fy~K~GaCR~GdrCSr~H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~Fd 132 (207)
.|..+++|++||+||+||+|||||||||+|||+|.+|+.|+||||+|||.+|++.....+ + ....++++++|.+|+
T Consensus 4 ~lasifgtekdKv~c~fy~k~gacR~gdrcsR~h~kpt~s~t~ll~nmyq~P~~~~~~~d---~-~~~~~~de~~q~~~d 79 (260)
T KOG2202|consen 4 YLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHEKPTFSQTVLLKNMYQNPENSWERRD---A-QGQFLTDEELQRHED 79 (260)
T ss_pred HHHHHhcccccccccchHHhhcccccccHHHHhhcccccchHHHHHHHHhCCCCCchhhh---h-ccccccHHHHHHHHH
Confidence 455679999999999999999999999999999999999999999999999987542222 1 335678899999999
Q ss_pred hHHHHHHHHHH-hcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCccccccC
Q psy16559 133 EFYDDVLPELR-SLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSKAMC 207 (207)
Q Consensus 133 eFyeDV~~Ec~-kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f~eA~C 207 (207)
+|||||+.|++ |||.|++++||+|.++|++|||||+|..+++|++|++.||||||+|+||+|+|+|||+|++|||
T Consensus 80 efyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea~C 155 (260)
T KOG2202|consen 80 EFYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREAIC 155 (260)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhhhh
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.89 E-value=3e-23 Score=200.14 Aligned_cols=97 Identities=23% Similarity=0.384 Sum_probs=85.5
Q ss_pred CCCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCC-----C
Q psy16559 85 NHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKS-----P 159 (207)
Q Consensus 85 ~H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~-----~ 159 (207)
.-.+|+.|+||||+|||++.++ + ++|++||++||+|||.|.+|.|+++.. +
T Consensus 507 ~l~rp~~S~vVvL~NMv~~~el---------------------d---edl~eDV~eEC~K~G~V~~v~I~~~~~~~~~~~ 562 (612)
T TIGR01645 507 KLMRTNRSNVIVLRNMVTPQDI---------------------D---EFLEGEIREECGKFGVVDRVIINFEKQGEEEDA 562 (612)
T ss_pred hhcCCCCCCEEEEeCCCChHHh---------------------H---HHHHHHHHHHhhcCceeEEEEEecCCCCccccc
Confidence 3468999999999999985432 1 247799999999999999999998643 4
Q ss_pred CcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCccccc
Q psy16559 160 HLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSKA 205 (207)
Q Consensus 160 h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f~eA 205 (207)
|+.|+|||+|.+.++|.+|++.||||||+||+|.|+|++.+.|..+
T Consensus 563 ~~~g~VfV~F~~~~~A~~A~~~LnGR~F~GR~V~a~~yd~~~f~~~ 608 (612)
T TIGR01645 563 EIIVKIFVEFSDSMEVDRAKAALDGRFFGGRTVVAEAYDQILFDHA 608 (612)
T ss_pred cceEEEEEEECCHHHHHHHHHHhcCCeECCeEEEEEEcCHHHhhcc
Confidence 8899999999999999999999999999999999999999999653
No 3
>KOG0147|consensus
Probab=99.82 E-value=8.1e-21 Score=178.71 Aligned_cols=92 Identities=27% Similarity=0.412 Sum_probs=80.4
Q ss_pred CCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEe
Q psy16559 90 SVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSY 169 (207)
Q Consensus 90 ~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF 169 (207)
..|+|++|+|||++... ..|+|.. +|-+||.+||+|||+|.+|.|..|. .|+|||+|
T Consensus 441 i~t~C~lL~nMFdpste-------te~n~d~------------eI~edV~Eec~k~g~v~hi~vd~ns----~g~VYvrc 497 (549)
T KOG0147|consen 441 IPTQCLLLSNMFDPSTE-------TEPNWDQ------------EIREDVIEECGKHGKVCHIFVDKNS----AGCVYVRC 497 (549)
T ss_pred CccHHHHHhhcCCcccc-------cCcchhh------------HHHHHHHHHHHhcCCeeEEEEccCC----CceEEEec
Confidence 47999999999996543 2456643 3458999999999999999999885 39999999
Q ss_pred CChHHHHHHHHHhCCceeCCeEEEEEecCcCcccc
Q psy16559 170 SNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSK 204 (207)
Q Consensus 170 ~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f~e 204 (207)
.+.+.|..|+.+||||||+||.|+|.|.|+++|..
T Consensus 498 ~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~ 532 (549)
T KOG0147|consen 498 PSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHS 532 (549)
T ss_pred CcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhh
Confidence 99999999999999999999999999999998753
No 4
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.79 E-value=2.9e-19 Score=164.62 Aligned_cols=100 Identities=28% Similarity=0.468 Sum_probs=85.7
Q ss_pred CCCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCccee
Q psy16559 85 NHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGN 164 (207)
Q Consensus 85 ~H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~ 164 (207)
.|+.+..+++|+|.|||++.... + ...|.+|++||++||++||.|+.|.|+.+ +..|+
T Consensus 355 ~~~~~~~~~~l~l~n~~~~~~~~-------~------------~~~~~~~~~dv~~e~~k~G~v~~v~v~~~---~~~G~ 412 (457)
T TIGR01622 355 STNNNLATTCLVLSNMFDPATEE-------E------------PNFDNEILDDVKEECSKYGGVVHIYVDTK---NSAGK 412 (457)
T ss_pred cccCCCCCcEEEEecCCCCcccc-------c------------chHHHHHHHHHHHHHHhcCCeeEEEEeCC---CCcee
Confidence 35566789999999999853211 1 23578899999999999999999999865 35799
Q ss_pred EEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCcccccc
Q psy16559 165 VYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSKAM 206 (207)
Q Consensus 165 VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f~eA~ 206 (207)
|||+|.+.++|.+|++.||||||+||+|.|.|++++.|..++
T Consensus 413 ~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~~~~~ 454 (457)
T TIGR01622 413 IYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDVYDMSC 454 (457)
T ss_pred EEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHHHHhhc
Confidence 999999999999999999999999999999999999997653
No 5
>KOG1548|consensus
Probab=99.74 E-value=6.2e-18 Score=152.60 Aligned_cols=95 Identities=26% Similarity=0.480 Sum_probs=78.9
Q ss_pred CCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEEE
Q psy16559 88 KPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYV 167 (207)
Q Consensus 88 ~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyV 167 (207)
++...+||+|+|||++..+.. +++ ...++-+||.+||+|||.|.+|+|+++ |+.|.|-|
T Consensus 261 k~r~~~tVi~kn~Ftp~~~~~------~~~------------l~~dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV 319 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDFEK------NPD------------LLNDLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTV 319 (382)
T ss_pred cccCCcEEEeeecCCHHHhcc------CHH------------HHHHHHHHHHHHHHHhCCcceEEEecc---CCCceeEE
Confidence 444677999999999766532 111 123566999999999999999999984 88999999
Q ss_pred EeCChHHHHHHHHHhCCceeCCeEEEEEecCc-Cccc
Q psy16559 168 SYSNEREALRAFYALTGRFYGGKQIRGQFCNV-PLWS 203 (207)
Q Consensus 168 kF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v-~~f~ 203 (207)
.|.+.++|..||+.|+||||+||+|+|+++.- ++|.
T Consensus 320 ~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~~ 356 (382)
T KOG1548|consen 320 SFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKFQ 356 (382)
T ss_pred EeCChHHHHHHHHHhcCeeecceEEEEEEeCCcceee
Confidence 99999999999999999999999999999865 4443
No 6
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.67 E-value=1.7e-16 Score=147.87 Aligned_cols=95 Identities=21% Similarity=0.367 Sum_probs=80.3
Q ss_pred CCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCC----CcceeEE
Q psy16559 91 VSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSP----HLRGNVY 166 (207)
Q Consensus 91 ~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~----h~~G~Vy 166 (207)
.|+||+|.||++..++. + .+.|+++.+||+++|++||.|.+|+|+.+..+ ...|+||
T Consensus 408 ~s~v~~l~N~~~~~~l~---------------~----d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~f 468 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLM---------------D----DEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVF 468 (509)
T ss_pred CceEEEeccCCchhHhc---------------C----cchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEE
Confidence 57899999999855431 1 12467888999999999999999999865322 3469999
Q ss_pred EEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCcccc
Q psy16559 167 VSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSK 204 (207)
Q Consensus 167 VkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f~e 204 (207)
|+|.+.++|.+|+..||||+|+||+|.+.|++...|..
T Consensus 469 V~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~~~~ 506 (509)
T TIGR01642 469 LEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGEDCYKA 506 (509)
T ss_pred EEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHHHhhc
Confidence 99999999999999999999999999999999998864
No 7
>smart00361 RRM_1 RNA recognition motif.
Probab=99.64 E-value=9.4e-16 Score=108.84 Aligned_cols=63 Identities=29% Similarity=0.600 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHhcCCeeEEE--EccCCC--CCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEE
Q psy16559 133 EFYDDVLPELRSLGQVTQFK--VCCNKS--PHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQ 195 (207)
Q Consensus 133 eFyeDV~~Ec~kyG~V~~v~--V~~n~~--~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae 195 (207)
+|++.+.+||++||.|.+|. +.++.+ ++++|++||.|.+.++|.+|++.||||+|+||+|.|+
T Consensus 4 ~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 4 DFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred hHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 56678889999999999985 344433 7899999999999999999999999999999999873
No 8
>KOG0120|consensus
Probab=99.62 E-value=6.4e-16 Score=146.12 Aligned_cols=94 Identities=21% Similarity=0.396 Sum_probs=79.7
Q ss_pred CceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccC-CCCCc---ceeEEE
Q psy16559 92 SKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCN-KSPHL---RGNVYV 167 (207)
Q Consensus 92 S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n-~~~h~---~G~VyV 167 (207)
+.+|.|.||.+..++. + .++|.+|+|||+.||++||.|..|.|+.. ..+++ .|+|||
T Consensus 399 t~Vl~L~n~Vt~deLk---------------d----d~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFV 459 (500)
T KOG0120|consen 399 TEVLCLTNVVTPDELK---------------D----DEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFV 459 (500)
T ss_pred chhhhhhhcCCHHHhc---------------c----hHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEE
Confidence 5566677777754431 1 35789999999999999999999999887 44444 699999
Q ss_pred EeCChHHHHHHHHHhCCceeCCeEEEEEecCcCcccc
Q psy16559 168 SYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSK 204 (207)
Q Consensus 168 kF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f~e 204 (207)
+|.+.++|++|..+|+||.|+||.|.|.|+++.+|..
T Consensus 460 efas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY~~ 496 (500)
T KOG0120|consen 460 EFADTEDSQRAMEELTGRKFANRTVVASYYDEDKYHA 496 (500)
T ss_pred EecChHHHHHHHHHccCceeCCcEEEEEecCHHHhhc
Confidence 9999999999999999999999999999999998853
No 9
>KOG0124|consensus
Probab=99.58 E-value=3.3e-15 Score=136.47 Aligned_cols=96 Identities=21% Similarity=0.431 Sum_probs=79.7
Q ss_pred CCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCC-----CCC
Q psy16559 86 HIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNK-----SPH 160 (207)
Q Consensus 86 H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~-----~~h 160 (207)
-.+|..|.+|+|+||.++.+++ +.|+ .+|.+||+|||.|.+|.|+... ...
T Consensus 440 LmR~~~S~VivLRNMV~P~DiD-----------------e~Le-------gEi~EECgKfG~V~rViI~nekq~e~edae 495 (544)
T KOG0124|consen 440 LMRKQESTVIVLRNMVDPKDID-----------------EDLE-------GEITEECGKFGAVNRVIIYNEKQGEEEDAE 495 (544)
T ss_pred HhccccCcEEEEeccCChhhhh-----------------hHHH-------HHHHHHHhcccceeEEEEEecccccccchh
Confidence 4567889999999999965531 2233 7999999999999999997532 123
Q ss_pred cceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCccccc
Q psy16559 161 LRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSKA 205 (207)
Q Consensus 161 ~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f~eA 205 (207)
....+||+|+...++.+|.++||||||+||.|.|+.++-..|..+
T Consensus 496 iiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~YDQ~~FD~~ 540 (544)
T KOG0124|consen 496 IIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVYDQERFDNS 540 (544)
T ss_pred hhheeeeeechhhHHHHHHHhhccceecCceeehhhhhhhccccc
Confidence 467899999999999999999999999999999999998888653
No 10
>KOG1996|consensus
Probab=99.58 E-value=2e-15 Score=134.48 Aligned_cols=89 Identities=25% Similarity=0.437 Sum_probs=75.3
Q ss_pred CceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccC--CCCCcceeEEEEe
Q psy16559 92 SKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCN--KSPHLRGNVYVSY 169 (207)
Q Consensus 92 S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n--~~~h~~G~VyVkF 169 (207)
.++|||+||...-.. + + +|-+++.+||+|||.|.+|.|... ..+|-...|||+|
T Consensus 281 tkvlllrnmVg~gev----------------d-~-------elede~keEceKyg~V~~viifeip~~p~deavRiFveF 336 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEV----------------D-E-------ELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEF 336 (378)
T ss_pred hHHHHhhhhcCcccc----------------c-H-------HHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeee
Confidence 466999999885432 1 1 344789999999999999999754 3456678899999
Q ss_pred CChHHHHHHHHHhCCceeCCeEEEEEecCcCcccc
Q psy16559 170 SNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSK 204 (207)
Q Consensus 170 ~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f~e 204 (207)
+..++|.+|+-.||||||+||.|.|.|+++.+|+.
T Consensus 337 ~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ekfs~ 371 (378)
T KOG1996|consen 337 ERVESAIKAVVDLNGRYFGGRVVSACFYNLEKFSN 371 (378)
T ss_pred ccHHHHHHHHHhcCCceecceeeeheeccHHhhhh
Confidence 99999999999999999999999999999999963
No 11
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.48 E-value=2.4e-13 Score=91.83 Aligned_cols=56 Identities=23% Similarity=0.527 Sum_probs=50.7
Q ss_pred HHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 138 VLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 138 V~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
++..|++||.|.+|.+..+. .|.+||+|.+.++|.+|++.|||++|+|++|.++|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 46789999999999998764 599999999999999999999999999999999985
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.26 E-value=3.8e-11 Score=106.81 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
++|++-|++||.|..+.|+.+. +...+|++||.|.+.++|.+|+..|||.+|+||+|.+.|..-.
T Consensus 284 ~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 284 TVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred HHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 5677778999999999998664 5678999999999999999999999999999999999997543
No 13
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.12 E-value=5.9e-10 Score=90.06 Aligned_cols=63 Identities=24% Similarity=0.382 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||++-|++||.|.++.|..+ .+.+.+|++||+|.+.++|++|+..|||..++||+|.+++..
T Consensus 49 ~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 49 ASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred HHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 578888899999999999765 356789999999999999999999999999999999999863
No 14
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.07 E-value=8.3e-10 Score=75.46 Aligned_cols=58 Identities=26% Similarity=0.498 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEE
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIR 193 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ 193 (207)
+||..-|++||.|..+.|..+...+..|.+||+|.+.++|.+|++.|||..++|+.|+
T Consensus 13 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 13 EELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp HHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 5777888999999999998877778899999999999999999999999999999985
No 15
>smart00362 RRM_2 RNA recognition motif.
Probab=99.05 E-value=1.8e-09 Score=72.14 Aligned_cols=58 Identities=24% Similarity=0.448 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEE
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRG 194 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~a 194 (207)
+||..-|.+||.|..+.+..+. +.+.|.+||.|.+.++|.+|+..|+|..|+|++|.+
T Consensus 14 ~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 14 EDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred HHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 4666677899999999998766 667899999999999999999999999999999986
No 16
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.98 E-value=2.6e-09 Score=74.17 Aligned_cols=58 Identities=29% Similarity=0.505 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEE
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIR 193 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ 193 (207)
+||...|+.||.|..|.+..+.....+|.+||+|.+.++|.+|++.++|.+++||.|.
T Consensus 13 ~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 13 EDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp HHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 6888889999999999998875566799999999999999999999999999999984
No 17
>smart00360 RRM RNA recognition motif.
Probab=98.95 E-value=4.7e-09 Score=69.75 Aligned_cols=59 Identities=19% Similarity=0.446 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEE
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRG 194 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~a 194 (207)
+||..-|+.||.|..+.|..+. .....|.+||+|.+.++|.+|+..|+|..++|+.|.+
T Consensus 11 ~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 11 EELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred HHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5677777899999999998764 3567899999999999999999999999999999986
No 18
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.95 E-value=4.6e-09 Score=93.41 Aligned_cols=63 Identities=21% Similarity=0.370 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||++.|++||+|.+|.|..+. +...+|++||+|.+.++|.+|+..|||..+.|+.|.+++..
T Consensus 18 ~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 18 EEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred HHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 5788888999999999998653 45688999999999999999999999999999999999864
No 19
>KOG0107|consensus
Probab=98.91 E-value=2.3e-09 Score=89.93 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
.|+..+|.+||+|..|+|..|. .|++||+|++..||..|+..|||+-+.|..|.||++..
T Consensus 25 ~eLE~~F~~yG~lrsvWvArnP----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 25 RELERAFSKYGPLRSVWVARNP----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred HHHHHHHHhcCcceeEEEeecC----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 4667788999999999999874 69999999999999999999999999999999999865
No 20
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.86 E-value=2.2e-08 Score=67.14 Aligned_cols=61 Identities=26% Similarity=0.555 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEe
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQF 196 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~ 196 (207)
++|..-|+.||.|..+.+..+......|.+||.|.+.++|..|+..|+|..|+|+.|.+.+
T Consensus 14 ~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 14 EDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred HHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5778888889999999998765556789999999999999999999999999999998864
No 21
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.85 E-value=1.6e-08 Score=92.46 Aligned_cols=63 Identities=17% Similarity=0.381 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||++-|++||.|++|.|..+ .+.+.+|++||+|.++++|.+|+..|||..+.|++|.+.+..
T Consensus 122 ~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 122 RELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred HHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 567777788999999999765 345678999999999999999999999999999999999863
No 22
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.84 E-value=1.6e-08 Score=96.32 Aligned_cols=64 Identities=28% Similarity=0.402 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
++|++.|++||.|.++.|..+.....+|++||.|.+.++|.+|+..|||++++|++|.+.+..-
T Consensus 300 ~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~ 363 (562)
T TIGR01628 300 EKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQR 363 (562)
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccC
Confidence 5778888999999999998876678899999999999999999999999999999999998643
No 23
>KOG4207|consensus
Probab=98.82 E-value=4.8e-09 Score=90.25 Aligned_cols=62 Identities=24% Similarity=0.432 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
+|++.-|+|||.|.+|+|+.+ .+...+|++||.|.+..+|+.|+.+|+|+..+||-|.|+++
T Consensus 28 d~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 28 DDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred HHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 678888999999999999876 45678999999999999999999999999999999988775
No 24
>KOG0127|consensus
Probab=98.77 E-value=2.5e-08 Score=95.29 Aligned_cols=68 Identities=16% Similarity=0.342 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec-CcCccc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC-NVPLWS 203 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~-~v~~f~ 203 (207)
.|+..-|++||.|..|.|+.+..+.+.|++||+|....+|.+|++.|||--++||+|-|.|. +-..|.
T Consensus 132 ~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 132 PDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYE 200 (678)
T ss_pred HHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccccc
Confidence 46778889999999999999998999999999999999999999999999999999999995 334454
No 25
>KOG0148|consensus
Probab=98.75 E-value=1.2e-08 Score=90.55 Aligned_cols=62 Identities=23% Similarity=0.477 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
+++++-|.+||+|.+.+|.++ .+...+|+.||.|-+.++|++||..|||.|.++|.|+..++
T Consensus 77 e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 77 EKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred HHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 788999999999999999875 35678999999999999999999999999999999997765
No 26
>KOG0122|consensus
Probab=98.73 E-value=7.2e-08 Score=84.51 Aligned_cols=64 Identities=23% Similarity=0.398 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
.|+.+-+.+||.|.+|+|..+. ++..+|++||.|.+.++|++||..|||+-|+.-.|.|||+.-
T Consensus 204 ~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP 268 (270)
T KOG0122|consen 204 DDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKP 268 (270)
T ss_pred hHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCC
Confidence 4565566799999999998874 467899999999999999999999999999999999999853
No 27
>KOG0114|consensus
Probab=98.68 E-value=1.3e-07 Score=73.84 Aligned_cols=82 Identities=17% Similarity=0.324 Sum_probs=66.7
Q ss_pred CCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEE
Q psy16559 87 IKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVY 166 (207)
Q Consensus 87 ~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~Vy 166 (207)
-.|...+.|.|+|+=- .+ +. |++.+-|++||.|..|.|-.. ..-+|.+|
T Consensus 13 lppevnriLyirNLp~--~I----------------Ts-----------eemydlFGkyg~IrQIRiG~~--k~TrGTAF 61 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPF--KI----------------TS-----------EEMYDLFGKYGTIRQIRIGNT--KETRGTAF 61 (124)
T ss_pred CChhhheeEEEecCCc--cc----------------cH-----------HHHHHHhhcccceEEEEecCc--cCcCceEE
Confidence 3566788999999822 22 22 566777899999999999542 23589999
Q ss_pred EEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 167 VSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 167 VkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
|-|++..||.+|+..|+|-.+++|.+.|-|+.-
T Consensus 62 VVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 62 VVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred EEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 999999999999999999999999999998754
No 28
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.68 E-value=1.3e-07 Score=83.66 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||++-|+.||.|.+|.|..+. ...|+.||.|.++++|..|+. |||..++||+|.+...+
T Consensus 19 ~dLrefFS~~G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 19 RDIKEFFSFSGDIEYVEMQSEN--ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred HHHHHHHHhcCCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 5788888999999999998764 247999999999999999994 99999999999999875
No 29
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.64 E-value=1.4e-07 Score=89.94 Aligned_cols=63 Identities=25% Similarity=0.433 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||++-|++||.|.+|+|+.+. +.+..|++||.|.+.++|.+|+..||+..+.|++|.+.++.
T Consensus 15 ~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 15 AKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred HHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 5677778999999999998764 36788999999999999999999999999999999998874
No 30
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.64 E-value=2.9e-07 Score=89.92 Aligned_cols=61 Identities=18% Similarity=0.390 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEe
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQF 196 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~ 196 (207)
++|++.|++||.|.+|.|..+ .+.+.+|++||+|.+.++|.+|+..|||..++||.|.+..
T Consensus 122 e~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 122 DTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred HHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 567778899999999999755 4567899999999999999999999999999999999875
No 31
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.64 E-value=1.5e-07 Score=88.94 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHH--hCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYA--LTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~--LnGR~f~GR~I~ae~~~ 198 (207)
+||.+-|+.||.|.++.|... +|.+||+|.+.++|.+|++. +||..++||+|.+.|+.
T Consensus 17 ~~L~~~f~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 17 ADLVEALIPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred HHHHHHHHhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 577778899999999999752 58999999999999999997 48899999999999985
No 32
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.62 E-value=2e-07 Score=88.03 Aligned_cols=60 Identities=22% Similarity=0.215 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
++|++-|+.||.|.+|+|..+. +|++||+|.+.++|..|+..|||.-+.|++|.+.++..
T Consensus 291 ~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 291 DRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred HHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 5778888999999999998752 69999999999999999999999999999999999743
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.60 E-value=3.1e-07 Score=84.86 Aligned_cols=63 Identities=13% Similarity=0.332 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||...|++||.|..|.|..+. +...+|++||.|.+.++|.+|+..|||..++|++|.+.|..
T Consensus 201 ~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 201 QELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred HHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 4566677899999999997654 34778999999999999999999999999999999999954
No 34
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.58 E-value=3.8e-07 Score=85.27 Aligned_cols=63 Identities=21% Similarity=0.300 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
++|.+-|++||.|..+.|..+. ++...|++||.|.+.++|..|+..|||..++|+.|.+.+..
T Consensus 310 ~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 310 DQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred HHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 5677777899999999987653 45678999999999999999999999999999999999864
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.51 E-value=5e-07 Score=87.76 Aligned_cols=56 Identities=20% Similarity=0.412 Sum_probs=51.0
Q ss_pred HHHHHHHHhc--CCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSL--GQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~ky--G~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
++|++.|++| |.|++|.+. +|++||.|.+.++|.+|+..|||..|+|+.|.+.++.
T Consensus 248 e~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 248 EIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred HHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 5677788999 999999875 4799999999999999999999999999999999974
No 36
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.47 E-value=6e-07 Score=82.18 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCC--eEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGG--KQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~G--R~I~ae~~~v 199 (207)
+||++.|++||.|..+.|..+ .+.+.+|++||+|.+.++|.+|++.|||..+.| ++|.+.+...
T Consensus 208 e~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 208 DQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred HHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence 577788899999999998755 356788999999999999999999999999977 7899988754
No 37
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.46 E-value=7.4e-07 Score=72.50 Aligned_cols=63 Identities=22% Similarity=0.422 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
++|.+.|.+||.|..+.|..+ .....+|+.||.|.+.++|..|+..|+|-+|.||+|.+.+..
T Consensus 130 ~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 130 EDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred HHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 678888999999999999765 467889999999999999999999999999999999999854
No 38
>KOG0125|consensus
Probab=98.39 E-value=5.7e-07 Score=81.75 Aligned_cols=61 Identities=23% Similarity=0.315 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
-|++..|+|||+|.+|.|..|. ..++|+.||.|++.+||++|-..|||-..-||.|.|...
T Consensus 111 pDL~aMF~kfG~VldVEIIfNE-RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 111 PDLRAMFEKFGKVLDVEIIFNE-RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred ccHHHHHHhhCceeeEEEEecc-CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 4788899999999999999885 457999999999999999999999999999999998754
No 39
>KOG0108|consensus
Probab=98.37 E-value=1.5e-06 Score=81.86 Aligned_cols=65 Identities=20% Similarity=0.439 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCCeeEEEEc-cCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 136 DDVLPELRSLGQVTQFKVC-CNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~-~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
++|..-|+..|.|..+++. +..++.++|+.|++|.+.++|..|++.|||+-|+||+|.+.|..-.
T Consensus 33 ~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 33 EQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred HHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 5777888999999999874 5567899999999999999999999999999999999999996543
No 40
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.36 E-value=2.3e-06 Score=83.26 Aligned_cols=62 Identities=19% Similarity=0.334 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeC-CeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYG-GKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~-GR~I~ae~~ 197 (207)
+||++-|++||.|.+++|..+.+...+|++||+|.+.++|++|++.|||..+. |+.|.+..+
T Consensus 73 d~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 73 DELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred HHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 57788889999999999987777788999999999999999999999999884 888766544
No 41
>KOG0113|consensus
Probab=98.30 E-value=2.2e-06 Score=77.09 Aligned_cols=61 Identities=16% Similarity=0.366 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEe
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQF 196 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~ 196 (207)
.++..||++||+|..|.|+.+ .+..++|++||.|.++.+-..|.+..+|-..+||.|.|.+
T Consensus 116 skLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 116 SKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred HHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 568889999999999999877 6788999999999999999999999999999999999987
No 42
>KOG0148|consensus
Probab=98.24 E-value=2.8e-06 Score=75.75 Aligned_cols=59 Identities=17% Similarity=0.368 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
++++.-|+.||.|.+|+|... .|+.||+|++.|.|.+||..|||--.+|.+|+|.+-..
T Consensus 179 ~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 179 DLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred HHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 456677899999999999874 79999999999999999999999999999999998654
No 43
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.24 E-value=8.7e-06 Score=71.46 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||++-|+.||+|.+|.|.++. ...|+.||.|.++++|..|+ .|||--+.|++|.+.-++
T Consensus 20 ~dLrefFS~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 20 KDVYDFFSHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred HHHHHHHHhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 6788888999999999998763 34689999999999999999 899999999999887643
No 44
>KOG0123|consensus
Probab=98.18 E-value=4.7e-06 Score=77.07 Aligned_cols=66 Identities=20% Similarity=0.331 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCccc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWS 203 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f~ 203 (207)
.++.+-|+.||.|++++|..+... ++|+ ||.|+++++|.+|+..|||+.+.|++|.+....-..++
T Consensus 91 ~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 91 KSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred HHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 356666789999999999876544 8999 99999999999999999999999999999776544443
No 45
>PLN03213 repressor of silencing 3; Provisional
Probab=98.09 E-value=8.9e-06 Score=77.66 Aligned_cols=59 Identities=22% Similarity=0.410 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCCh--HHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNE--REALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~--e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
+|+..-|+.||.|.+|.|++..+ +|++||.|.+. .++.+||..|||--+.||.|.+.-.
T Consensus 25 DDLravFSeFGsVkdVEIpRETG---RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 25 DDLLKIFSPMGTVDAVEFVRTKG---RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred HHHHHHHHhcCCeeEEEEecccC---CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 56777789999999999995543 99999999988 6899999999999999999999865
No 46
>KOG0121|consensus
Probab=98.09 E-value=1.1e-05 Score=65.23 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCeeEEEEc-cCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVC-CNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~-~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
|.|.+-|++.|.|..|+.- +.....+-|+.||.|.+.++|..|++-+||--.+.|+|.+.+-
T Consensus 51 EqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 51 EQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred HHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4577788999999999873 3234568999999999999999999999999999999999874
No 47
>KOG0127|consensus
Probab=98.08 E-value=1.3e-05 Score=77.09 Aligned_cols=89 Identities=18% Similarity=0.338 Sum_probs=69.4
Q ss_pred CcccCCCCCCC---CCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccC
Q psy16559 80 DHCSRNHIKPS---VSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCN 156 (207)
Q Consensus 80 drCSr~H~~P~---~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n 156 (207)
++-+.+|..+. ...||.|+|+-- + . ++ +.|.+.|++||+|.-+.|+..
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~f--D----------~------tE-----------Eel~~~fskFG~v~ya~iV~~ 327 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPF--D----------T------TE-----------EELKEHFSKFGEVKYAIIVKD 327 (678)
T ss_pred cchhccccccccccccceEEEecCCc--c----------c------cH-----------HHHHHHHHhhccceeEEEEec
Confidence 45555665332 468999999822 1 1 22 567788999999998887654
Q ss_pred -CCCCcceeEEEEeCChHHHHHHHHHh-----CC-ceeCCeEEEEEec
Q psy16559 157 -KSPHLRGNVYVSYSNEREALRAFYAL-----TG-RFYGGKQIRGQFC 197 (207)
Q Consensus 157 -~~~h~~G~VyVkF~~~e~A~~Ai~~L-----nG-R~f~GR~I~ae~~ 197 (207)
.++|+.|.+||+|.+..+|+.||.+- .| -.++||+|.+...
T Consensus 328 k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~A 375 (678)
T KOG0127|consen 328 KDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLA 375 (678)
T ss_pred cCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeec
Confidence 56899999999999999999999998 44 7899999999875
No 48
>KOG0130|consensus
Probab=98.05 E-value=6.2e-06 Score=67.22 Aligned_cols=64 Identities=22% Similarity=0.406 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCeeEEEEc-cCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVC-CNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~-~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||.+-|..||+|.+|.+. +..++-++|++.|+|++.++|++|+..|||--.-|..|.+.|+-|
T Consensus 87 edi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 87 EDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred HHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 7888999999999999883 334567899999999999999999999999999999999999755
No 49
>KOG4206|consensus
Probab=98.03 E-value=2.2e-05 Score=67.96 Aligned_cols=62 Identities=23% Similarity=0.413 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
.-+..-|+.||.|.+|.++.. ..++|-+||-|.+.+.|..|+.+|+|..|=|+++++.|+..
T Consensus 28 rsL~~LFsqfG~ildI~a~kt--~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 28 RSLYLLFSQFGKILDISAFKT--PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred HHHHHHHHhhCCeEEEEecCC--CCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 455557799999999999863 57899999999999999999999999999999999999754
No 50
>KOG0123|consensus
Probab=97.99 E-value=1.4e-05 Score=74.00 Aligned_cols=61 Identities=23% Similarity=0.385 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
.++++-|+.+|+|+++.||++. . +.|++||.|.++.+|.+|+..||.-.+.|++|+..++.
T Consensus 13 ~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~ 73 (369)
T KOG0123|consen 13 AMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQ 73 (369)
T ss_pred HHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhc
Confidence 5677888999999999999998 5 89999999999999999999999999999999998874
No 51
>KOG0153|consensus
Probab=97.98 E-value=3.2e-05 Score=70.82 Aligned_cols=117 Identities=19% Similarity=0.361 Sum_probs=77.5
Q ss_pred cccccccccccccccCcccCCCCCCCCCceEEeCCCcCcc-ccCcccc-------ccc-------C--------cccccc
Q psy16559 65 ELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHL-SMDNKSV-------REY-------D--------TDINLE 121 (207)
Q Consensus 65 ~~C~Fy~K~GaCR~GdrCSr~H~~P~~S~tllL~NMf~~p-~~~~~~~-------~~~-------d--------~d~~le 121 (207)
-.|+||-|- -|.-|..|+.+|-+| ..--|.+.|+=++. .+..+.+ .+. | ..+.-+
T Consensus 162 ~Icsf~v~g-eckRG~ec~yrhEkp-~d~~L~~qni~dryyg~ndPva~kil~ra~~~~~lepPeD~~I~tLyIg~l~d~ 239 (377)
T KOG0153|consen 162 HICSFFVKG-ECKRGAECPYRHEKP-PDDPLSLQNIKDRYYGLNDPVALKILNRAGSAGTLEPPEDTSIKTLYIGGLNDE 239 (377)
T ss_pred ccccceeec-cccccccccccccCC-CCcchhhcccccccccccChHHHHHHhhcccccccCCCcccceeEEEecccccc
Confidence 457787765 999999999999999 33235455542211 0000000 000 0 011112
Q ss_pred cChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHH-hCCceeCCeEEEEEecCc
Q psy16559 122 FDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYA-LTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 122 ~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~-LnGR~f~GR~I~ae~~~v 199 (207)
+++ .||+.-|.+||.|..++|.- -.|.+||+|.+-.+|+.|... +|.-..+|+.|.+.|.+-
T Consensus 240 v~e-----------~dIrdhFyqyGeirsi~~~~-----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 240 VLE-----------QDIRDHFYQYGEIRSIRILP-----RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred hhH-----------HHHHHHHhhcCCeeeEEeec-----ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 222 68888889999999999953 368999999999999877655 565667999999998765
No 52
>KOG0105|consensus
Probab=97.82 E-value=5.1e-05 Score=64.82 Aligned_cols=60 Identities=20% Similarity=0.368 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 137 DVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 137 DV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
||.+-|-|||.|..|.+-.. ..+.+++||+|++..||+.||..-||=-|+|-.|.+||-.
T Consensus 22 eieDlFyKyg~i~~ieLK~r--~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 22 EIEDLFYKYGRIREIELKNR--PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cHHHHHhhhcceEEEEeccC--CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 44445689999999987432 3457899999999999999999999999999999999954
No 53
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.81 E-value=3.8e-05 Score=70.58 Aligned_cols=57 Identities=19% Similarity=0.449 Sum_probs=46.9
Q ss_pred HHhcCCeeEEEEccCCC--CCcc--eeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 142 LRSLGQVTQFKVCCNKS--PHLR--GNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 142 c~kyG~V~~v~V~~n~~--~h~~--G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
|+.||+|..|+|-+... .... .-|||.|.+.+||.+||...+|-+.|||.|.|.|-.
T Consensus 141 FGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGT 201 (480)
T COG5175 141 FGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGT 201 (480)
T ss_pred hhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecCc
Confidence 58999999999976431 0111 237999999999999999999999999999999853
No 54
>KOG0145|consensus
Probab=97.80 E-value=0.00012 Score=65.34 Aligned_cols=85 Identities=22% Similarity=0.346 Sum_probs=70.2
Q ss_pred CCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccC-CCCCccee
Q psy16559 86 HIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCN-KSPHLRGN 164 (207)
Q Consensus 86 H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~ 164 (207)
.+--..|+|=||-|..+ ..| +. ++++.-|+..|.|+++++.++ ..++.-|+
T Consensus 34 ~~~t~~skTNLIvNYLP-Q~M----------------Tq-----------dE~rSLF~SiGeiEScKLvRDKitGqSLGY 85 (360)
T KOG0145|consen 34 GNDTDESKTNLIVNYLP-QNM----------------TQ-----------DELRSLFGSIGEIESCKLVRDKITGQSLGY 85 (360)
T ss_pred CCCcCcccceeeeeecc-ccc----------------CH-----------HHHHHHhhcccceeeeeeeecccccccccc
Confidence 34455788988888765 222 22 567777899999999999875 46788999
Q ss_pred EEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 165 VYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 165 VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
.||.|-++.||++|+..|||-..-.+.|.+.|..
T Consensus 86 GFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 86 GFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 9999999999999999999999999999999964
No 55
>KOG0109|consensus
Probab=97.80 E-value=2.4e-05 Score=70.44 Aligned_cols=56 Identities=16% Similarity=0.401 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
.+++.-|.+||+|.+..|. ++++||.|.-.++|..|++.|||+-|.|+++++++|.
T Consensus 93 ~ElRa~fe~ygpviecdiv-------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 93 QELRAKFEKYGPVIECDIV-------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred HHHhhhhcccCCceeeeee-------cceeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 3577788999999998886 4789999999999999999999999999999999974
No 56
>KOG0144|consensus
Probab=97.77 E-value=2.5e-05 Score=73.33 Aligned_cols=64 Identities=20% Similarity=0.347 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCcee-CC--eEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFY-GG--KQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f-~G--R~I~ae~~~v 199 (207)
.||++-|++||.|+++.|-+......+|.+||+|++.+-|..||++|||-+= -| .+|.|.|.+-
T Consensus 139 ~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADt 205 (510)
T KOG0144|consen 139 NEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADT 205 (510)
T ss_pred HHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEeccc
Confidence 6899999999999999999887778899999999999999999999999653 23 5777777643
No 57
>KOG4208|consensus
Probab=97.76 E-value=7.6e-05 Score=64.17 Aligned_cols=59 Identities=20% Similarity=0.319 Sum_probs=52.6
Q ss_pred HHhc-CCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 142 LRSL-GQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 142 c~ky-G~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
+..| |.|..+++.+|. ++..+|++||+|++++.|.-|...||+=.|.|+.|.|.|.|-.
T Consensus 70 ~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 70 FRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred hhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 3444 889999998883 5778999999999999999999999999999999999999865
No 58
>KOG4660|consensus
Probab=97.64 E-value=3.5e-05 Score=73.94 Aligned_cols=54 Identities=33% Similarity=0.584 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEE
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIR 193 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ 193 (207)
+++..-|++||.|..|.- +.+-+|.|||.|-+..+|++|+++||+|-++|+.|.
T Consensus 90 ~~L~~~f~~yGeir~ir~----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 90 DTLLRIFGAYGEIREIRE----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred HHHHHHHHhhcchhhhhc----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 567778899999999554 345689999999999999999999999999999987
No 59
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.63 E-value=1.3e-05 Score=47.48 Aligned_cols=25 Identities=36% Similarity=0.853 Sum_probs=19.9
Q ss_pred CCcccccccccccccccCcccCCCC
Q psy16559 63 DKELCPFYSKVGACRFFDHCSRNHI 87 (207)
Q Consensus 63 d~~~C~Fy~K~GaCR~GdrCSr~H~ 87 (207)
.+..|.+|.++|.|++|++|...|.
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccccChhhccCCccCCCCCcCccCC
Confidence 4678999999999999999999996
No 60
>KOG0110|consensus
Probab=97.61 E-value=0.00017 Score=71.04 Aligned_cols=68 Identities=21% Similarity=0.322 Sum_probs=58.4
Q ss_pred HHhHHHHHHHHHHhcCCeeEEEEccCCCC----CcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 131 FVEFYDDVLPELRSLGQVTQFKVCCNKSP----HLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 131 FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~----h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
|+.--+++...|.++|.|..+.|..-..+ -+.|++||+|.+.++|++|++.|+|--.+|+.|.+.+++
T Consensus 525 f~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 525 FDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred cccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 44445889999999999999988653221 235999999999999999999999999999999999998
No 61
>KOG0145|consensus
Probab=97.55 E-value=0.00024 Score=63.51 Aligned_cols=61 Identities=25% Similarity=0.312 Sum_probs=54.9
Q ss_pred HHHHHHhcCCeeEEEEccCCC-CCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 138 VLPELRSLGQVTQFKVCCNKS-PHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 138 V~~Ec~kyG~V~~v~V~~n~~-~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
++.-|+.||.|.+|+|.++.+ ..-+|+.||...+-++|..|+..|||-..++|.|.+.|-.
T Consensus 295 LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 295 LWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred HHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 566779999999999988754 5679999999999999999999999999999999999854
No 62
>KOG0149|consensus
Probab=97.53 E-value=0.00016 Score=63.38 Aligned_cols=63 Identities=13% Similarity=0.272 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCeeEEEE-ccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKV-CCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V-~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
++++.=|++||.|++.+| ++..+++.+|+.||.|.+.++|.+|.+.-| =..|||...|.+..+
T Consensus 27 ~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 27 ETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred HHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 566777789999987666 555678899999999999999999999865 467888888877655
No 63
>KOG0117|consensus
Probab=97.50 E-value=0.00027 Score=66.80 Aligned_cols=62 Identities=21% Similarity=0.369 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCcee-CCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFY-GGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f-~GR~I~ae~~ 197 (207)
+|+..-|++.|+|-+|++-.+ .+...+|++||.|.+.++|+.||+.||+--+ .|+.|-|..|
T Consensus 98 deLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 98 DELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred hhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 678889999999999999765 5667899999999999999999999999644 7999998876
No 64
>KOG0126|consensus
Probab=97.43 E-value=2.3e-05 Score=66.66 Aligned_cols=62 Identities=21% Similarity=0.387 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
.||..=|+.||.|++|.+.++ .++.+.|++|+.|++..+..-||..|||--..||.|.+.-+
T Consensus 50 gDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 50 GDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred CcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 466667789999999999876 35688999999999999999999999999999999998753
No 65
>KOG0117|consensus
Probab=97.39 E-value=0.00054 Score=64.74 Aligned_cols=55 Identities=16% Similarity=0.329 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
|-|..+|++||.|.+|+..+ -++||-|.+-++|.+|++.|||.-.+|.+|.|.|.
T Consensus 274 E~lk~~F~~~G~veRVkk~r-------DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 274 ETLKKLFNEFGKVERVKKPR-------DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred HHHHHHHHhccceEEeeccc-------ceeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 45667888999999999875 38999999999999999999999999999999996
No 66
>KOG0124|consensus
Probab=97.33 E-value=0.00025 Score=65.84 Aligned_cols=61 Identities=18% Similarity=0.390 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEe
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQF 196 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~ 196 (207)
+-|+.-|.-||+|.+|....+ .+.|.+|++||+|+-++.|+-|++.|||-..+||-|.+-.
T Consensus 128 DtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 128 DTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 346667889999999999655 4678899999999999999999999999999999998753
No 67
>KOG0131|consensus
Probab=97.29 E-value=0.00035 Score=59.35 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=51.9
Q ss_pred HHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 138 VLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 138 V~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+++-|-.-|+|++++|++.. ....+|+.||+|.++++|+-|++.||+-..=||+|.+.-+.
T Consensus 26 l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 26 LYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred HHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 44455689999999999764 34578999999999999999999999988789999987654
No 68
>KOG0146|consensus
Probab=97.18 E-value=0.00064 Score=61.05 Aligned_cols=63 Identities=25% Similarity=0.411 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCC-ceeCC--eEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTG-RFYGG--KQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnG-R~f~G--R~I~ae~~~ 198 (207)
+||+.-|.-||.|.++.|.+......+|.+||+|.+--+|+.||..|+| |...| -.|.+.|.+
T Consensus 34 ~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~AD 99 (371)
T KOG0146|consen 34 DDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFAD 99 (371)
T ss_pred HHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEecc
Confidence 7999999999999999999887778899999999999999999999999 66655 345555554
No 69
>KOG0111|consensus
Probab=97.13 E-value=0.00043 Score=60.60 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=52.0
Q ss_pred HHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCc
Q psy16559 142 LRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPL 201 (207)
Q Consensus 142 c~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~ 201 (207)
|--||.|.+|.++-+. +...+|+.||+|.-.+||..|+..||+--.-||.|++.|.....
T Consensus 31 FIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~k 91 (298)
T KOG0111|consen 31 FIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEK 91 (298)
T ss_pred cccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCcc
Confidence 3469999999998654 35679999999999999999999999999999999999975433
No 70
>KOG0415|consensus
Probab=97.10 E-value=0.0038 Score=57.95 Aligned_cols=66 Identities=12% Similarity=0.328 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec-CcCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC-NVPL 201 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~-~v~~ 201 (207)
+|+.--|+.||+|.+..|.++. ++..--++||+|.+.+++++|+=.|++-..+.|.|+|.|| .|..
T Consensus 254 eDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVsk 321 (479)
T KOG0415|consen 254 EDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVSK 321 (479)
T ss_pred cchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhhh
Confidence 3555567999999999987652 2334468999999999999999999999999999999996 4443
No 71
>KOG0131|consensus
Probab=97.09 E-value=0.001 Score=56.59 Aligned_cols=59 Identities=12% Similarity=0.233 Sum_probs=48.1
Q ss_pred HHHhcCCeeEE-EE-ccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 141 ELRSLGQVTQF-KV-CCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 141 Ec~kyG~V~~v-~V-~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
-|++||.+..- .| .+..+..+.|..||-|++.+.|.+|+.+|||.+.+.|+|+++|.--
T Consensus 116 tFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 116 TFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFK 176 (203)
T ss_pred HHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEe
Confidence 34889988652 22 2333467899999999999999999999999999999999998643
No 72
>KOG4661|consensus
Probab=97.06 E-value=0.0011 Score=64.64 Aligned_cols=62 Identities=26% Similarity=0.259 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
-|+..-|+|||+|+..+|+.|. ++..+-+.||..++.++|.+||..|+---.-||.|.|+-.
T Consensus 420 tDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 420 TDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred hHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 4788889999999999999885 3456789999999999999999999999999999999864
No 73
>KOG0144|consensus
Probab=96.97 E-value=0.0015 Score=61.76 Aligned_cols=63 Identities=19% Similarity=0.357 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCc-eeCC--eEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGR-FYGG--KQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR-~f~G--R~I~ae~~~ 198 (207)
.|+++-|++||.|.+|.|.++ .+...+|..||+|.+.++|.+|+.+|++. .+-| -+|.+.|.+
T Consensus 49 ~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad 115 (510)
T KOG0144|consen 49 KDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYAD 115 (510)
T ss_pred HHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccc
Confidence 578888899999999999876 34577999999999999999999999874 4444 455555543
No 74
>KOG0110|consensus
Probab=96.92 E-value=0.0011 Score=65.50 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHhcCCeeEEEEccCCCC-CcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCc
Q psy16559 133 EFYDDVLPELRSLGQVTQFKVCCNKSP-HLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPL 201 (207)
Q Consensus 133 eFyeDV~~Ec~kyG~V~~v~V~~n~~~-h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~ 201 (207)
.=+.+|+.-|..||.|..|.|+.-.+. -.+|+.||.|-+.++|.+|+.+|.+--|=||.|..+|....+
T Consensus 625 At~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 625 ATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred HHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 334789999999999999999977333 349999999999999999999999988889999999976643
No 75
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.89 E-value=0.0036 Score=48.15 Aligned_cols=61 Identities=23% Similarity=0.376 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCeeEEE-EccC-------CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEE-EEEec
Q psy16559 136 DDVLPELRSLGQVTQFK-VCCN-------KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQI-RGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~-V~~n-------~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I-~ae~~ 197 (207)
..|..+|++||.|.+.. +.++ .......-|.|+|++..+|.+|++. ||+-|+|..+ -+-++
T Consensus 20 ~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 20 NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLMVGVKPC 89 (100)
T ss_dssp HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEEEEEEE-
T ss_pred HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEEEEEEc
Confidence 57999999999998775 1111 0112246799999999999999987 9999998654 35544
No 76
>KOG2314|consensus
Probab=96.85 E-value=0.0015 Score=63.49 Aligned_cols=55 Identities=16% Similarity=0.306 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCe
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGK 190 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR 190 (207)
.-+..-|+|+|+|++++++-...+...|++|++|.+..+|..|++.|||.-++-.
T Consensus 79 ~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 79 KVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred HHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 3455567899999999998665556899999999999999999999999888764
No 77
>smart00356 ZnF_C3H1 zinc finger.
Probab=96.82 E-value=0.00075 Score=38.86 Aligned_cols=22 Identities=45% Similarity=0.961 Sum_probs=20.0
Q ss_pred cccccccccccccccCcccCCCC
Q psy16559 65 ELCPFYSKVGACRFFDHCSRNHI 87 (207)
Q Consensus 65 ~~C~Fy~K~GaCR~GdrCSr~H~ 87 (207)
..|++| ++|.|++|++|...|.
T Consensus 5 ~~C~~~-~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 5 ELCKFF-KRGYCPYGDRCKFAHP 26 (27)
T ss_pred CcCcCc-cCCCCCCCCCcCCCCc
Confidence 369999 9999999999999886
No 78
>KOG4212|consensus
Probab=96.75 E-value=0.0035 Score=59.54 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
.-+++-|..||.|.-.-|-.| ...+| -|+|.++++|++|+..|||-..+||-|.+.|.
T Consensus 551 qmlrDKfre~G~v~yadime~--GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 551 QMLRDKFREIGHVLYADIMEN--GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred HHHHHHHHhccceehhhhhcc--CCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 345667777899987777544 34466 79999999999999999999999999999873
No 79
>KOG4209|consensus
Probab=96.70 E-value=0.0015 Score=57.05 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCeeEEEEc-cCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVC-CNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~-~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
+.+..+++-+|.|..+.|. ++...|++|+.||.|.+.+.+..|++ |||--+.|++|.+.+.
T Consensus 116 ~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 116 TKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred chhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 3466778899999877774 44556899999999999999999999 9999999999998874
No 80
>KOG0147|consensus
Probab=96.69 E-value=0.0028 Score=61.08 Aligned_cols=63 Identities=16% Similarity=0.302 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 135 YDDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 135 yeDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
-++++.=|+-||.|..|.+.... ++..+|+.||+|.+.++|.+|...|||=-.+||.|.+..+
T Consensus 292 e~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 292 EDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred HHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 36777778899999999998775 6778999999999999999999999998899999997654
No 81
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.60 E-value=0.0062 Score=41.35 Aligned_cols=39 Identities=23% Similarity=0.487 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHH
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAF 179 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai 179 (207)
++|..-|..||+|+++.+..+ .-.+||+|.+..+|++|+
T Consensus 15 ~~vl~~F~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 15 EEVLEHFASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 578889999999999999743 235999999999999985
No 82
>KOG0132|consensus
Probab=96.49 E-value=0.008 Score=60.26 Aligned_cols=57 Identities=16% Similarity=0.297 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
.|+..-|+.||.|.+|.+. +.+|.+||+..+-.+|.+|+++|+.--++++.|.+.|.
T Consensus 436 ~dL~~~feefGeiqSi~li-----~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 436 QDLANLFEEFGEIQSIILI-----PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred HHHHHHHHhcccceeEeec-----cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 5777888899999999995 45899999999999999999999999999999987763
No 83
>KOG4212|consensus
Probab=96.38 E-value=0.0094 Score=56.72 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=51.8
Q ss_pred HhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 143 RSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 143 ~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+|-|.|.-|.+..+.+..++|++-|+|.+++.+++|++.||---..||+|.|.-.+.
T Consensus 67 ekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 67 EKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred HhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 489999999998888889999999999999999999999999999999999865443
No 84
>KOG1190|consensus
Probab=96.20 E-value=0.027 Score=53.20 Aligned_cols=61 Identities=23% Similarity=0.288 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCc
Q psy16559 137 DVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPL 201 (207)
Q Consensus 137 DV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~ 201 (207)
-++.-|+-||.|.+|+|..|.. -++-|+|++...|+-|+..|+|-..-|++|++.||.-++
T Consensus 314 ~LftlFgvYGdVqRVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 314 VLFTLFGVYGDVQRVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred HHHHHHhhhcceEEEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 4677889999999999998864 579999999999999999999955556999999986554
No 85
>KOG0146|consensus
Probab=96.12 E-value=0.0051 Score=55.34 Aligned_cols=63 Identities=21% Similarity=0.290 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCeeEEEEcc-CCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCC-NKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~-n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
.++...|--||.|++-+|.- ..+...+-+.||.|++..+|+.||++|||=-.+-+.|.+.+-.
T Consensus 300 aEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 300 AELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred HHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcC
Confidence 35666788999999888853 3456788999999999999999999999999999988887743
No 86
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.02 E-value=0.043 Score=45.05 Aligned_cols=62 Identities=21% Similarity=0.477 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCccc
Q psy16559 133 EFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWS 203 (207)
Q Consensus 133 eFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f~ 203 (207)
++..++...+..||.|.=|++.. |..+|.|.+-++|.+|+. |+|--.+|+.|.+.+- -.+|-
T Consensus 48 ~l~~~ll~~~~~~GevvLvRfv~-------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LK-tpdW~ 109 (146)
T PF08952_consen 48 NLMDELLQKFAQYGEVVLVRFVG-------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLK-TPDWL 109 (146)
T ss_dssp HHHHHHHHHHHCCS-ECEEEEET-------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-------
T ss_pred HHHHHHHHHHHhCCceEEEEEeC-------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeC-CccHH
Confidence 45678999999999999887753 679999999999998875 6999999999999885 23443
No 87
>KOG4454|consensus
Probab=95.87 E-value=0.0065 Score=53.24 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=47.8
Q ss_pred HhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 143 RSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 143 ~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
-.-|+|.+|.|++......+ ++||.|.++-+-.-|++.|||--.-|+.|.+.+-.-+
T Consensus 31 iqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 31 IQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred hccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence 47899999999876544445 8999999999999999999998888888888775443
No 88
>KOG2416|consensus
Probab=95.74 E-value=0.0057 Score=59.80 Aligned_cols=78 Identities=23% Similarity=0.341 Sum_probs=63.1
Q ss_pred CCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHH-hcCCeeEEEEccCCCCCcceeEEEEe
Q psy16559 91 VSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELR-SLGQVTQFKVCCNKSPHLRGNVYVSY 169 (207)
Q Consensus 91 ~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~-kyG~V~~v~V~~n~~~h~~G~VyVkF 169 (207)
.|.+|-|.||..++-+ .-+..+++ +-|.|+.++| |+.+..+||.|
T Consensus 443 ~SnvlhI~nLvRPFTl-----------------------------gQLkelL~rtgg~Vee~Wm-----DkIKShCyV~y 488 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTL-----------------------------GQLKELLGRTGGNVEEFWM-----DKIKSHCYVSY 488 (718)
T ss_pred ccceEeeecccccchH-----------------------------HHHHHHHhhccCchHHHHH-----HHhhcceeEec
Confidence 5889999999997643 24677788 5778888876 56788999999
Q ss_pred CChHHHHHHHHHhCC-cee--CCeEEEEEecCcCcc
Q psy16559 170 SNEREALRAFYALTG-RFY--GGKQIRGQFCNVPLW 202 (207)
Q Consensus 170 ~~~e~A~~Ai~~LnG-R~f--~GR~I~ae~~~v~~f 202 (207)
.+.++|..-+.+||| +|= +++-|.|.|..-++.
T Consensus 489 ss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~del 524 (718)
T KOG2416|consen 489 SSVEEAAATREALHNVQWPPSNPKHLIADFVRADEL 524 (718)
T ss_pred ccHHHHHHHHHHHhccccCCCCCceeEeeecchhHH
Confidence 999999999999999 775 457788998765543
No 89
>KOG0106|consensus
Probab=95.54 E-value=0.011 Score=51.44 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
.||..-+.+||.|.++.+- .|++||.|.+..+|..|+-.|||+-|.|-.+.+++.-
T Consensus 16 ~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 16 RDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred hHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 5777777899999998873 4788999999999999999999999999988777743
No 90
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=95.49 E-value=0.026 Score=43.43 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCc-----eeCCeEEEEEe
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGR-----FYGGKQIRGQF 196 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR-----~f~GR~I~ae~ 196 (207)
+||.+.|+.||.|.-|-+... .-..||+|.++++|++|+..+.-. .++|..++++.
T Consensus 16 e~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 16 EDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp HHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred HHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 789999999999987776542 346899999999999999988755 55555554443
No 91
>KOG0533|consensus
Probab=95.40 E-value=0.064 Score=47.38 Aligned_cols=65 Identities=18% Similarity=0.326 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
+||.+-|..||.+..+.|.-+......|..=|.|..-+||.+|++.+||=-.+|+++..+...-.
T Consensus 98 ~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 98 ADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred HHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 68888889999999999987777778899999999999999999999999999999988875433
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=95.32 E-value=0.032 Score=42.13 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=37.2
Q ss_pred HHHHHHHhcC-CeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 137 DVLPELRSLG-QVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 137 DV~~Ec~kyG-~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
-+..-+..+| +|..|. .|.++|+|.+.+.|.+|.+-|+|-.-=|+.|.+.|.|..
T Consensus 22 RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 22 RLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp HHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred HHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 3444445655 677762 377999999999999999999999999999999999764
No 93
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=95.27 E-value=0.0095 Score=43.31 Aligned_cols=17 Identities=35% Similarity=0.600 Sum_probs=10.4
Q ss_pred CCCCCceEEeCCCcCcc
Q psy16559 88 KPSVSKTLLLNNFFTHL 104 (207)
Q Consensus 88 ~P~~S~tllL~NMf~~p 104 (207)
.|..|+||||+|||++.
T Consensus 50 ~~~aS~C~lLkNMFDP~ 66 (73)
T PF15519_consen 50 PPIASRCFLLKNMFDPA 66 (73)
T ss_dssp -S---SEEEEESSS-TT
T ss_pred CCCCCceeeeecCCCcc
Confidence 35789999999999954
No 94
>KOG0226|consensus
Probab=95.24 E-value=0.016 Score=51.61 Aligned_cols=54 Identities=19% Similarity=0.444 Sum_probs=43.8
Q ss_pred HHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEE
Q psy16559 142 LRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQ 195 (207)
Q Consensus 142 c~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae 195 (207)
+.||-.-..-+|.+. .+....|+.||.|.+..|+..|++.|||+|-+.|+|.+.
T Consensus 211 f~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 211 FKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred HHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 345655555566544 356789999999999999999999999999999998753
No 95
>KOG4285|consensus
Probab=94.89 E-value=0.058 Score=49.20 Aligned_cols=51 Identities=22% Similarity=0.265 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEE
Q psy16559 137 DVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIR 193 (207)
Q Consensus 137 DV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ 193 (207)
=|..+|++||.|++.+-..|. -.+||+|.+.-+|.+|+.. ||+.++|-.+.
T Consensus 212 ~vL~~F~~cG~Vvkhv~~~ng-----NwMhirYssr~~A~KALsk-ng~ii~g~vmi 262 (350)
T KOG4285|consen 212 IVLNLFSRCGEVVKHVTPSNG-----NWMHIRYSSRTHAQKALSK-NGTIIDGDVMI 262 (350)
T ss_pred HHHHHHHhhCeeeeeecCCCC-----ceEEEEecchhHHHHhhhh-cCeeeccceEE
Confidence 478899999999998887542 3589999999999999987 99999998763
No 96
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=94.87 E-value=0.18 Score=38.53 Aligned_cols=44 Identities=18% Similarity=0.340 Sum_probs=35.3
Q ss_pred cCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeC
Q psy16559 145 LGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYG 188 (207)
Q Consensus 145 yG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~ 188 (207)
.|...=++++-+. +..-.|++||-|.+.++|.+-.+.++|+...
T Consensus 27 ~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 27 KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 4777777776442 2334799999999999999999999998765
No 97
>KOG0109|consensus
Probab=94.84 E-value=0.058 Score=49.05 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 137 DVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 137 DV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+++.-|++||+|.+.-|.+|. .||--++...|..||+.|||=..+|-.|.++=+.-
T Consensus 18 elr~lFe~ygkVlECDIvKNY-------gFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 18 ELRSLFEQYGKVLECDIVKNY-------GFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred HHHHHHHhhCceEeeeeeccc-------ceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 455567999999999999885 57777899999999999999999999999997654
No 98
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.77 E-value=0.12 Score=42.64 Aligned_cols=55 Identities=18% Similarity=0.347 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
..|...++.||+|.+|..|-. --+-|-|.+..+|=+|+.++..|- .|..++|.+.
T Consensus 105 ~sV~~~Ls~fGpI~SVT~cGr------qsavVvF~d~~SAC~Av~Af~s~~-pgtm~qCsWq 159 (166)
T PF15023_consen 105 KSVIQRLSVFGPIQSVTLCGR------QSAVVVFKDITSACKAVSAFQSRA-PGTMFQCSWQ 159 (166)
T ss_pred HHHHHHHHhcCCcceeeecCC------ceEEEEehhhHHHHHHHHhhcCCC-CCceEEeecc
Confidence 578889999999999999853 458899999999999999999965 6888888763
No 99
>KOG1677|consensus
Probab=94.71 E-value=0.016 Score=51.93 Aligned_cols=29 Identities=31% Similarity=0.729 Sum_probs=26.1
Q ss_pred CCCcccccccccccccccCcccCCCCCCC
Q psy16559 62 PDKELCPFYSKVGACRFFDHCSRNHIKPS 90 (207)
Q Consensus 62 ~d~~~C~Fy~K~GaCR~GdrCSr~H~~P~ 90 (207)
...+.|+.|.+||.|.||.+|-..|..+.
T Consensus 175 ~kt~lC~~f~~tG~C~yG~rC~F~H~~~~ 203 (332)
T KOG1677|consen 175 YKTKLCPKFQKTGLCKYGSRCRFIHGEPE 203 (332)
T ss_pred CCCcCCCccccCCCCCCCCcCeecCCCcc
Confidence 45678999999999999999999999874
No 100
>KOG1548|consensus
Probab=94.19 E-value=0.28 Score=45.55 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCee--------EEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVT--------QFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~--------~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
+++.+.++|+|.|. .|+++++..++++|-.-+-|-..++-.-|++.|++--|.|+.|+|+-.
T Consensus 149 dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerA 218 (382)
T KOG1548|consen 149 DEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERA 218 (382)
T ss_pred HHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehh
Confidence 45666778999874 477787777899999999999999999999999999999999999854
No 101
>KOG0106|consensus
Probab=93.70 E-value=0.042 Score=47.75 Aligned_cols=55 Identities=27% Similarity=0.427 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
.|+.+-+..+|.+..... ..+..+|+|++.++|.+|+..|+|--+.|+.|++...
T Consensus 114 qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 114 QDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred HHHhhhhcccCCCchhhh-------hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 688888899999944333 3688999999999999999999999999999998543
No 102
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.70 E-value=0.31 Score=41.24 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhC--CceeCCeEEEEEecCcCcc
Q psy16559 137 DVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALT--GRFYGGKQIRGQFCNVPLW 202 (207)
Q Consensus 137 DV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~Ln--GR~f~GR~I~ae~~~v~~f 202 (207)
.+..-+.+||.+..+.+-... +.|-|-|.+.++|.+|...|+ |..|.|..+.+.|...+..
T Consensus 11 ~l~~l~~~~~~~~~~~~L~sF-----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 11 ELEELFSTYDPPVQFSPLKSF-----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp HHHHHHHTT-SS-EEEEETTT-----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred HHHHHHHhcCCceEEEEcCCC-----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 445556799999999987654 789999999999999999999 9999999999999866554
No 103
>KOG2068|consensus
Probab=93.68 E-value=0.025 Score=51.77 Aligned_cols=56 Identities=18% Similarity=0.331 Sum_probs=45.0
Q ss_pred HHhcCCeeEEEEccCCC----CCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 142 LRSLGQVTQFKVCCNKS----PHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 142 c~kyG~V~~v~V~~n~~----~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
|+.||.|..|.+..... ...---+||.|...++|..||...+|-.++||.|.|.|-
T Consensus 101 fgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~g 160 (327)
T KOG2068|consen 101 FGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLG 160 (327)
T ss_pred ccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhC
Confidence 35799999999976431 111122999999999999999999999999999888774
No 104
>KOG0151|consensus
Probab=93.31 E-value=0.63 Score=46.87 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCCeeEEEEccCCC----CCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKS----PHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~----~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
..+...|+.||+|..|+|....+ +..+-..||-|-+-.||++|++.|+|+.+-++.+.--|.
T Consensus 189 ~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg 254 (877)
T KOG0151|consen 189 NFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG 254 (877)
T ss_pred HHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence 45677889999999999965422 345667899999999999999999999999999988776
No 105
>KOG0116|consensus
Probab=90.87 E-value=0.44 Score=45.25 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCeeEEEEcc-CCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEe
Q psy16559 136 DDVLPELRSLGQVTQFKVCC-NKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQF 196 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~-n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~ 196 (207)
..+.+.|.+||.|....|.. +..+....+.||.|.+..++..|+.+= =-..+||.|.++-
T Consensus 303 ~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Vee 363 (419)
T KOG0116|consen 303 AELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEE 363 (419)
T ss_pred HHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEe
Confidence 45777889999999988854 323333488999999999999999985 7778899998875
No 106
>KOG1855|consensus
Probab=90.59 E-value=0.33 Score=46.19 Aligned_cols=49 Identities=16% Similarity=0.332 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCeeEEEEccC---CCC---Cc--------ceeEEEEeCChHHHHHHHHHhC
Q psy16559 135 YDDVLPELRSLGQVTQFKVCCN---KSP---HL--------RGNVYVSYSNEREALRAFYALT 183 (207)
Q Consensus 135 yeDV~~Ec~kyG~V~~v~V~~n---~~~---h~--------~G~VyVkF~~~e~A~~Ai~~Ln 183 (207)
|+.|..-|+.+|.|..|.||.. ..+ -+ +-.++|+|...+.|.+|...||
T Consensus 245 ~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 245 YENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred HHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 4677888899999999999986 111 11 3347999999999999999995
No 107
>KOG1190|consensus
Probab=89.98 E-value=0.69 Score=43.95 Aligned_cols=60 Identities=23% Similarity=0.310 Sum_probs=47.8
Q ss_pred HHHHHhcCCeeEEEEccCCCCCccee-EEEEeCChHHHHHHHHHhCCce-eCC-eEEEEEecCcCcc
Q psy16559 139 LPELRSLGQVTQFKVCCNKSPHLRGN-VYVSYSNEREALRAFYALTGRF-YGG-KQIRGQFCNVPLW 202 (207)
Q Consensus 139 ~~Ec~kyG~V~~v~V~~n~~~h~~G~-VyVkF~~~e~A~~Ai~~LnGR~-f~G-R~I~ae~~~v~~f 202 (207)
..-|++||.|.+|...... .|+ +-|+|.+...|+.|-.+|+||- |+| ..|+..||..++.
T Consensus 168 HqvFS~fG~VlKIiTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~L 230 (492)
T KOG1190|consen 168 HQVFSKFGFVLKIITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDL 230 (492)
T ss_pred HHHHhhcceeEEEEEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccc
Confidence 4456999999999887532 233 6899999999999999999984 555 6888899887754
No 108
>KOG1456|consensus
Probab=89.23 E-value=0.98 Score=42.62 Aligned_cols=60 Identities=18% Similarity=0.256 Sum_probs=48.5
Q ss_pred HHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCC-ceeCC-eEEEEEecCcCc
Q psy16559 138 VLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTG-RFYGG-KQIRGQFCNVPL 201 (207)
Q Consensus 138 V~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnG-R~f~G-R~I~ae~~~v~~ 201 (207)
+..-|.-.|+|.+|+|.... .--+-|+|++.+.|++|-.+||| --|+| -.|..+|..-++
T Consensus 139 ly~Icnp~GkVlRIvIfkkn----gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 139 LYTICNPQGKVLRIVIFKKN----GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred hhhhcCCCCceEEEEEEecc----ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 44567789999999998653 24589999999999999999999 45666 688888876654
No 109
>KOG4205|consensus
Probab=89.14 E-value=0.42 Score=43.65 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCeeEEEEc-cCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEe
Q psy16559 136 DDVLPELRSLGQVTQFKVC-CNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQF 196 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~-~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~ 196 (207)
+|.++.+.+||.|..+.+. +.....++|+.||.|.++++..++. .....-|+|++|.|--
T Consensus 112 ~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkr 172 (311)
T KOG4205|consen 112 EDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKR 172 (311)
T ss_pred HHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEee
Confidence 6888899999998887774 5555678999999998888666655 4578889999887754
No 110
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.73 E-value=1.9 Score=30.79 Aligned_cols=50 Identities=22% Similarity=0.361 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEE
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIR 193 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ 193 (207)
+|++.-+.+|+-.. |.. + ..| .||-|.+..+|++|..+.||+.+-+-.+.
T Consensus 15 ~d~K~~Lr~y~~~~-I~~-d-----~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 15 EDFKKRLRKYRWDR-IRD-D-----RTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred HHHHHHHhcCCcce-EEe-c-----CCE-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 68899999998643 332 2 235 79999999999999999999988776654
No 111
>KOG4205|consensus
Probab=88.10 E-value=0.38 Score=43.94 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEE
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQ 195 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae 195 (207)
+.+++-+.+||.|.+.+|-++ ...+.+|+.||.|++.+.-.+++.. .---++||.|.+.
T Consensus 21 e~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 21 ESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPK 80 (311)
T ss_pred HHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccce
Confidence 344555599999999998654 4578899999999988876666554 2234556655443
No 112
>KOG4210|consensus
Probab=87.19 E-value=0.35 Score=43.46 Aligned_cols=65 Identities=23% Similarity=0.302 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPL 201 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~ 201 (207)
+|+..++..+|.|..+.++... +..+.|+.||.|.+..++..|+.. +++..+|+++..++.+-..
T Consensus 200 d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 200 DDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred HHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 4555778899999999997653 456789999999999999999999 9999999999998865543
No 113
>KOG2202|consensus
Probab=86.70 E-value=0.53 Score=41.97 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=44.3
Q ss_pred HHHHHHHHhhc-cCCCCcchhhcccCCCCCCcccccccccccccccCcccCCCCCCCCCceEEe
Q psy16559 35 FKKSIEDFIEG-VCNELPDGFRTNVETKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLL 97 (207)
Q Consensus 35 ~l~~~~~~~~~-~~~~~p~~~~~~~~te~d~~~C~Fy~K~GaCR~GdrCSr~H~~P~~S~tllL 97 (207)
+...+.++|+| --..+|..+-...-|......|.+|.++ .|+.|.-|...|.++ .|+.|+.
T Consensus 122 ~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea~C~~~e~~-~C~rG~~CnFmH~k~-~sr~L~r 183 (260)
T KOG2202|consen 122 DAEAALEDLNNRWYNGRPIHAELSPVTDFREAICGQFERT-ECSRGGACNFMHVKR-LSRSLRR 183 (260)
T ss_pred HHHHHHHHHcCccccCCcceeeecCcCchhhhhhcccccc-cCCCCCcCcchhhhh-hhHHHHH
Confidence 33344446666 2224666666667788999999999999 999999999999995 4555544
No 114
>KOG4211|consensus
Probab=85.92 E-value=2.8 Score=40.54 Aligned_cols=34 Identities=15% Similarity=0.358 Sum_probs=27.9
Q ss_pred CeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHH
Q psy16559 147 QVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYA 181 (207)
Q Consensus 147 ~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~ 181 (207)
.|.++.+.+.. ....|-+||+|.+++++.+|++.
T Consensus 35 ~I~~~~~~r~~-Gr~sGeA~Ve~~seedv~~Alkk 68 (510)
T KOG4211|consen 35 GIENLEIPRRN-GRPSGEAYVEFTSEEDVEKALKK 68 (510)
T ss_pred ceeEEEEeccC-CCcCcceEEEeechHHHHHHHHh
Confidence 47777776643 56789999999999999999974
No 115
>KOG1457|consensus
Probab=84.14 E-value=1.7 Score=38.50 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=31.6
Q ss_pred eeEEEEeCChHHHHHHHHHhCCceeC---CeEEEEEecC
Q psy16559 163 GNVYVSYSNEREALRAFYALTGRFYG---GKQIRGQFCN 198 (207)
Q Consensus 163 G~VyVkF~~~e~A~~Ai~~LnGR~f~---GR~I~ae~~~ 198 (207)
-+.||.|.+..+|..|+.+|||-.|| |..|+.+|..
T Consensus 78 pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAK 116 (284)
T KOG1457|consen 78 PVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAK 116 (284)
T ss_pred ceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehh
Confidence 46899999999999999999999998 5678888753
No 116
>KOG4211|consensus
Probab=83.76 E-value=6.1 Score=38.30 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCeeE-EEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCcc
Q psy16559 137 DVLPELRSLGQVTQ-FKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLW 202 (207)
Q Consensus 137 DV~~Ec~kyG~V~~-v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f 202 (207)
||.+=|+-.=.|.. |.++......+.|-+||+|++.+.|++|+.. |.+-++-|-|.+--+...++
T Consensus 119 dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~~e~ 184 (510)
T KOG4211|consen 119 DIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSRAEV 184 (510)
T ss_pred HHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHHHHH
Confidence 44444443223333 3333333345889999999999999999976 44455556555544444333
No 117
>KOG4307|consensus
Probab=80.33 E-value=3.7 Score=41.61 Aligned_cols=61 Identities=16% Similarity=0.253 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCCe-eEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEe
Q psy16559 136 DDVLPELRSLGQV-TQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQF 196 (207)
Q Consensus 136 eDV~~Ec~kyG~V-~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~ 196 (207)
+||.+=|.-|-.+ .+|.+-.|....+.|-.-|-|++.++|.+|+..|+||-...|.|...+
T Consensus 882 ~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 882 EDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred HHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4555555666655 456666677778899999999999999999999999999999998764
No 118
>KOG1995|consensus
Probab=79.53 E-value=1.9 Score=40.07 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=39.8
Q ss_pred EEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 150 QFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 150 ~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
.|.|..+ .+..++|-+.|.|.+.-.|+.||..++|+-|.|..|.+.+.
T Consensus 103 ki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a 151 (351)
T KOG1995|consen 103 KIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLA 151 (351)
T ss_pred chhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhh
Confidence 3455544 34678999999999999999999999999999988877653
No 119
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=78.18 E-value=6.3 Score=30.69 Aligned_cols=43 Identities=12% Similarity=0.329 Sum_probs=34.5
Q ss_pred CCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCC
Q psy16559 146 GQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGG 189 (207)
Q Consensus 146 G~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~G 189 (207)
..|.+++|.++..+ -+=-|-++|.+..+|..=...+||+-|+.
T Consensus 39 ~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 39 EDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 36788888775421 23358899999999999999999999976
No 120
>KOG0120|consensus
Probab=78.03 E-value=2.6 Score=40.99 Aligned_cols=63 Identities=22% Similarity=0.324 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCeeEEEEccCCC-CCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKS-PHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~-~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
..|.+-+..||.+..+..+.|.. .-..|+.|..|-+..-...|+..|||--.++.+|+|...-
T Consensus 304 ~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 304 DQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred HHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 34566667899999999887765 3678999999999999999999999999999999998753
No 121
>KOG3152|consensus
Probab=77.31 E-value=1.8 Score=38.83 Aligned_cols=56 Identities=23% Similarity=0.259 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCeeEEEEccCCCC------Cccee-------EEEEeCChHHHHHHHHHhCCceeCCeEE
Q psy16559 137 DVLPELRSLGQVTQFKVCCNKSP------HLRGN-------VYVSYSNEREALRAFYALTGRFYGGKQI 192 (207)
Q Consensus 137 DV~~Ec~kyG~V~~v~V~~n~~~------h~~G~-------VyVkF~~~e~A~~Ai~~LnGR~f~GR~I 192 (207)
-+++=++.||.|-.|++..+... .-.|+ .+|+|.+-..|.++...|||--.+|+.=
T Consensus 90 rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk~ 158 (278)
T KOG3152|consen 90 RLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGKKK 158 (278)
T ss_pred HHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCCCC
Confidence 35556679999999999764211 00122 5899999999999999999999999853
No 122
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=76.65 E-value=1.1 Score=39.04 Aligned_cols=46 Identities=30% Similarity=0.621 Sum_probs=33.5
Q ss_pred cchhhc--ccCCCCCCcccccccccccccccCcccCCCCCCCCCceEEeC
Q psy16559 51 PDGFRT--NVETKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLN 98 (207)
Q Consensus 51 p~~~~~--~~~te~d~~~C~Fy~K~GaCR~GdrCSr~H~~P~~S~tllL~ 98 (207)
|..++. ++.|.+ +.|-=|--||.|-|||.|..+|.+-.+-..--|-
T Consensus 128 Pt~~r~~~viD~qp--dVCKdyk~TGYCGYGDsCKflH~R~D~KtGWkLn 175 (259)
T COG5152 128 PTMFRDGEVIDTQP--DVCKDYKETGYCGYGDSCKFLHDRSDFKTGWKLN 175 (259)
T ss_pred CceeeccceeecCc--ccccchhhcccccCCchhhhhhhhhhhhcccccc
Confidence 455554 466554 5799999999999999999999887544444333
No 123
>KOG0128|consensus
Probab=76.00 E-value=1.4 Score=45.01 Aligned_cols=56 Identities=20% Similarity=0.364 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCeeEEEEc--cCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEE
Q psy16559 136 DDVLPELRSLGQVTQFKVC--CNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQI 192 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~--~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I 192 (207)
+|+...+..+|.+..+.|. .| .+.++|.+||.|.++++|.+||....+-+|+.-.+
T Consensus 682 ~dl~~~~~~~~~~e~vqi~~h~n-~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v 739 (881)
T KOG0128|consen 682 EDLSERFSPSGTIEVVQIVIHKN-EKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISV 739 (881)
T ss_pred chhhhhcCccchhhhHHHHHHhh-ccccccceeeEeecCCchhhhhhhhhhhhhhhhhh
Confidence 6777788888877665553 44 35789999999999999999999888777764333
No 124
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=75.88 E-value=2 Score=23.29 Aligned_cols=18 Identities=33% Similarity=0.685 Sum_probs=13.6
Q ss_pred cccccccccccccCcccCCCC
Q psy16559 67 CPFYSKVGACRFFDHCSRNHI 87 (207)
Q Consensus 67 C~Fy~K~GaCR~GdrCSr~H~ 87 (207)
|.|+.. |+.|+.|...|.
T Consensus 2 Ck~~~~---C~~~~~C~f~HP 19 (19)
T PF14608_consen 2 CKFGPN---CTNGDNCPFSHP 19 (19)
T ss_pred CcCcCC---CCCCCcCccCCc
Confidence 665544 999999988884
No 125
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=75.62 E-value=4.7 Score=29.52 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=27.5
Q ss_pred CeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeC
Q psy16559 147 QVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYG 188 (207)
Q Consensus 147 ~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~ 188 (207)
.|.++.+++ ++.|+|||+=.++.+...|++.+.+=+..
T Consensus 33 ~I~Si~~~~----~lkGyIyVEA~~~~~V~~ai~gi~~i~~~ 70 (84)
T PF03439_consen 33 NIYSIFAPD----SLKGYIYVEAERESDVKEAIRGIRHIRGS 70 (84)
T ss_dssp ---EEEE-T----TSTSEEEEEESSHHHHHHHHTT-TTEEEE
T ss_pred ceEEEEEeC----CCceEEEEEeCCHHHHHHHHhcccceeec
Confidence 566777654 57999999999999999999999875443
No 126
>KOG0128|consensus
Probab=74.68 E-value=1.2 Score=45.40 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+....-|.++|.|.++.++.+..+.+.|.+||-|.++.+|.+++..++++-+.-+-+.+..+++
T Consensus 751 e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 751 EELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred HHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 3445566799999999998888889999999999999999999999999988888887777654
No 127
>KOG1456|consensus
Probab=72.91 E-value=12 Score=35.47 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+-||.-+--||.|.+|+.-+-. .|.+-|+..+...-++|+..|||-..=|..|.+.+|.-
T Consensus 303 drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 303 DRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred hhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 4577777889999999986643 58999999999999999999999888888888877643
No 128
>KOG1365|consensus
Probab=72.55 E-value=2.8 Score=39.75 Aligned_cols=93 Identities=13% Similarity=0.186 Sum_probs=61.0
Q ss_pred cCCCCCCCC-CceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCc
Q psy16559 83 SRNHIKPSV-SKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHL 161 (207)
Q Consensus 83 Sr~H~~P~~-S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~ 161 (207)
.+.|..|+. .-||-|+.+=- + -+-++|-.+|.||--||+ -..|.+.-|..+++
T Consensus 270 p~~~~p~~~~kdcvRLRGLPy--~----------------AtvEdIL~FlgdFa~~i~--------f~gVHmv~N~qGrP 323 (508)
T KOG1365|consen 270 PARLVPPTRSKDCVRLRGLPY--E----------------ATVEDILDFLGDFATDIR--------FQGVHMVLNGQGRP 323 (508)
T ss_pred ccccCCCCCCCCeeEecCCCh--h----------------hhHHHHHHHHHHHhhhcc--------cceeEEEEcCCCCc
Confidence 445666665 45677887611 1 122455555555554443 22344445777899
Q ss_pred ceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCc
Q psy16559 162 RGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPL 201 (207)
Q Consensus 162 ~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~ 201 (207)
.|-+||+|.+.++|..|.+.-+..+--+|-|.+-=+.++.
T Consensus 324 SGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ee 363 (508)
T KOG1365|consen 324 SGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEE 363 (508)
T ss_pred ChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHH
Confidence 9999999999999999999888877777777665454443
No 129
>KOG4676|consensus
Probab=69.79 E-value=7.8 Score=36.91 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCC----CcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSP----HLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~----h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+.|..-|+..|+|.++.|+.|..+ -+.-.+||+|.+...+..| +.|.+-.|=++.|.|--++
T Consensus 22 dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 22 DQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred HHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceeeeeeEEEEecC
Confidence 346667788999999999876543 3456799999999876654 6777777778887775543
No 130
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=67.60 E-value=14 Score=26.14 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=25.9
Q ss_pred CeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEe
Q psy16559 147 QVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQF 196 (207)
Q Consensus 147 ~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~ 196 (207)
.|-+|.|.++ +.||.- ..+.|..++..|+|..+.|++|.++.
T Consensus 32 ~IG~I~I~~~-------~S~vev-~~~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 32 DIGRIDIFDN-------FSFVEV-PEEVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GEEEEEE-SS--------EEEEE--TT-HHHHHHHHTT--SSS----EEE
T ss_pred hEEEEEEeee-------EEEEEE-CHHHHHHHHHHhcCCCCCCeeEEEEE
Confidence 5778888765 356666 44579999999999999999999875
No 131
>KOG0112|consensus
Probab=66.12 E-value=5.7 Score=41.13 Aligned_cols=55 Identities=20% Similarity=0.355 Sum_probs=47.9
Q ss_pred HHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCC--eEEEEEec
Q psy16559 138 VLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGG--KQIRGQFC 197 (207)
Q Consensus 138 V~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~G--R~I~ae~~ 197 (207)
...+|..||.|..|-+ +|-.-+.||.|++...|+.|+..|-|=-|+| +.|.+.|.
T Consensus 472 l~r~fd~fGpir~Idy-----~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 472 LNREFDRFGPIRIIDY-----RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred HHHHhhccCcceeeec-----ccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 4568889999999877 5777899999999999999999999999988 66888774
No 132
>KOG2591|consensus
Probab=65.05 E-value=9.7 Score=37.73 Aligned_cols=61 Identities=18% Similarity=0.336 Sum_probs=45.2
Q ss_pred HHHHHHHH--hcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCc--eeCCeEEEEEecCcCcc
Q psy16559 136 DDVLPELR--SLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGR--FYGGKQIRGQFCNVPLW 202 (207)
Q Consensus 136 eDV~~Ec~--kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR--~f~GR~I~ae~~~v~~f 202 (207)
|+|.--|. ..-++.++...-| -+-||.|++..||+.|.+.|.-+ -|-|++|.|.+-++..|
T Consensus 190 e~Vk~lf~~encPk~iscefa~N------~nWyITfesd~DAQqAykylreevk~fqgKpImARIKaintf 254 (684)
T KOG2591|consen 190 EVVKALFKGENCPKVISCEFAHN------DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARIKAINTF 254 (684)
T ss_pred HHHHHHhccCCCCCceeeeeeec------CceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhhhhhhcc
Confidence 45555443 3567777666555 35899999999999999999764 69999999887655443
No 133
>KOG1677|consensus
Probab=64.84 E-value=2.8 Score=37.49 Aligned_cols=30 Identities=23% Similarity=0.586 Sum_probs=24.6
Q ss_pred CCcccccccccccccc-cCcccCCCCCCCCC
Q psy16559 63 DKELCPFYSKVGACRF-FDHCSRNHIKPSVS 92 (207)
Q Consensus 63 d~~~C~Fy~K~GaCR~-GdrCSr~H~~P~~S 92 (207)
....|.+|.++|.|++ |+.|-..|..-...
T Consensus 131 kt~lc~~~~~~g~c~y~ge~crfah~~~e~r 161 (332)
T KOG1677|consen 131 KTPLCRSFRKSGTCKYRGEQCRFAHGLEELR 161 (332)
T ss_pred cCCcceeeecCccccccCchhhhcCCccccc
Confidence 4578999999999999 99998877655433
No 134
>KOG4206|consensus
Probab=62.08 E-value=41 Score=29.51 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeC-CeEEEEEe
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYG-GKQIRGQF 196 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~-GR~I~ae~ 196 (207)
+++++ .|+.-..|+.+.+. .|.+||+|.+...|..|.+.|.|=..- +.++...|
T Consensus 164 ~~lf~---qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 164 SDLFE---QFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred HHHHh---hCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 45554 45555555555543 589999999999999999999885444 44444443
No 135
>KOG1813|consensus
Probab=58.45 E-value=11 Score=34.52 Aligned_cols=50 Identities=16% Similarity=0.299 Sum_probs=34.3
Q ss_pred CCcchhhcccCCCCCCcccccccccccccccCcccCCCCCCCCCceEEeC
Q psy16559 49 ELPDGFRTNVETKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLN 98 (207)
Q Consensus 49 ~~p~~~~~~~~te~d~~~C~Fy~K~GaCR~GdrCSr~H~~P~~S~tllL~ 98 (207)
-+|..+++..-----...|-=|--||-|-+||.|-.+|.+--.-..--|.
T Consensus 171 ra~~~~r~~~~~d~qpDicKdykeTgycg~gdSckFlh~r~DyK~GWqi~ 220 (313)
T KOG1813|consen 171 RAAMHTRAGERIDYQPDICKDYKETGYCGYGDSCKFLHDRSDYKAGWQIE 220 (313)
T ss_pred chhhhhcccceeecCchhhhhhHhhCcccccchhhhhhhhhhccccceee
Confidence 45666765211112356798899999999999999999987554444443
No 136
>KOG1040|consensus
Probab=56.71 E-value=5.1 Score=36.95 Aligned_cols=24 Identities=33% Similarity=0.661 Sum_probs=16.9
Q ss_pred ccccccccccccccCcccCCCCCC
Q psy16559 66 LCPFYSKVGACRFFDHCSRNHIKP 89 (207)
Q Consensus 66 ~C~Fy~K~GaCR~GdrCSr~H~~P 89 (207)
.|.||.+.|.|..|..|.-.|..|
T Consensus 107 ec~ff~~~g~c~~~~~c~y~h~dp 130 (325)
T KOG1040|consen 107 ECKFFSLFGECTNGKDCPYLHGDP 130 (325)
T ss_pred cccccccccccccccCCcccCCCh
Confidence 567777777777777777777766
No 137
>PLN00108 unknown protein; Provisional
Probab=55.54 E-value=25 Score=31.48 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=52.4
Q ss_pred ccC-hHHHHHHHHhHHHHHHHHHH-----------hcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCC----
Q psy16559 121 EFD-ETEMHKYFVEFYDDVLPELR-----------SLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTG---- 184 (207)
Q Consensus 121 e~~-~eel~~~FdeFyeDV~~Ec~-----------kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnG---- 184 (207)
.+. ..++++.|.+|.+.|...+. -+|--..+.+... .-|+.=-+++-. +.++-++|++.|..
T Consensus 43 PL~~~p~i~~~~~~Fk~~Vl~~~~~~~~~f~~~l~~~gid~siF~~p~-~LHLTLgmL~L~-~~eev~kA~~~L~s~~~~ 120 (257)
T PLN00108 43 PLAIYPDLKKNIEAFQNSVLGNNDKDPLKFQSTLAEMGIEKSIFVSPK-TFHLTVVMLKLE-NNESVVKAQNILKSICSN 120 (257)
T ss_pred EcCCCHHHHHHHHHHHHHHHhccccccccccccccccCCCHHHcCCCC-ceEEEEEEEEcC-CHHHHHHHHHHHHHHHHH
Confidence 453 56899999999999998543 4675555555332 246654466644 55556666655543
Q ss_pred --ceeCCeEEEEEecCcCccc
Q psy16559 185 --RFYGGKQIRGQFCNVPLWS 203 (207)
Q Consensus 185 --R~f~GR~I~ae~~~v~~f~ 203 (207)
..++|+++.+.+..+.-|.
T Consensus 121 i~~~l~~~pl~I~lkGL~~Mn 141 (257)
T PLN00108 121 VRQALKDRPVFIRLRGLDCMN 141 (257)
T ss_pred HHHhhCCCCeEEEEEeehhcC
Confidence 3456788888887776664
No 138
>KOG2185|consensus
Probab=55.32 E-value=5.2 Score=38.17 Aligned_cols=30 Identities=30% Similarity=0.616 Sum_probs=23.3
Q ss_pred cCCCCCCcccccccccccccccCcccCCCCC
Q psy16559 58 VETKPDKELCPFYSKVGACRFFDHCSRNHIK 88 (207)
Q Consensus 58 ~~te~d~~~C~Fy~K~GaCR~GdrCSr~H~~ 88 (207)
.-|...-.+|+||. -|-||||..|-..|-.
T Consensus 134 ~PTh~sMkpC~ffL-eg~CRF~enCRfSHG~ 163 (486)
T KOG2185|consen 134 TPTHESMKPCKFFL-EGRCRFGENCRFSHGL 163 (486)
T ss_pred cCcchhhccchHhh-ccccccCcccccccCc
Confidence 34556667899875 6999999999877754
No 139
>KOG0115|consensus
Probab=55.24 E-value=12 Score=33.72 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCC
Q psy16559 137 DVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGG 189 (207)
Q Consensus 137 DV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~G 189 (207)
....+++.||+|..-+|+-+....+.|--.|.|...-.|.+|....+-+-|+|
T Consensus 47 ll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 47 LLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred HHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 45567889999987777655445677889999999999999999998777765
No 140
>COG3309 VapD Uncharacterized virulence-associated protein D [Function unknown]
Probab=55.24 E-value=21 Score=27.34 Aligned_cols=62 Identities=19% Similarity=0.163 Sum_probs=41.8
Q ss_pred HhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCC----ceeCCeEEEEEecCcCcccc
Q psy16559 132 VEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTG----RFYGGKQIRGQFCNVPLWSK 204 (207)
Q Consensus 132 deFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnG----R~f~GR~I~ae~~~v~~f~e 204 (207)
..-|.||+..++++|= .|. .|-||+..+...+|..-+.++|- -||+.-.=.+.+..+++|..
T Consensus 22 ~~aY~Dir~~L~~~gF-------~~t----QGSVYl~~~~i~~~~~~~~~q~~~~q~~wf~~cV~dIr~~riE~~~d 87 (96)
T COG3309 22 RQAYDDIRRVLERHGF-------ENT----QGSVYLNDEGINQAAGTLAAQNLAKQFQWFDKCVRDIRAFRIEDDSD 87 (96)
T ss_pred HHHHHHHHHHHHHcCc-------ccc----cceEEEccchHHHHHHHHHHHHHHHHhHHHHHHHHHhHhhhhhhccc
Confidence 4678999999999994 333 79999999988877654444332 46665554455555555544
No 141
>KOG1763|consensus
Probab=50.72 E-value=12 Score=34.34 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=26.4
Q ss_pred cCCCCCCcccccccccccccccCcccCCCCCCC
Q psy16559 58 VETKPDKELCPFYSKVGACRFFDHCSRNHIKPS 90 (207)
Q Consensus 58 ~~te~d~~~C~Fy~K~GaCR~GdrCSr~H~~P~ 90 (207)
.++-+-.+.|-| ||-|-|--|+.|...|..-.
T Consensus 86 ~gvDPKSvvCaf-Fk~g~C~KG~kCKFsHdl~~ 117 (343)
T KOG1763|consen 86 KGVDPKSVVCAF-FKQGTCTKGDKCKFSHDLAV 117 (343)
T ss_pred cCCCchHHHHHH-HhccCCCCCCcccccchHHH
Confidence 566688889986 68999999999999997543
No 142
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=46.89 E-value=46 Score=25.17 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALT 183 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~Ln 183 (207)
.||..-|+-||.|.--.|.+ .-+||-..+.+.|..|+..++
T Consensus 23 ~DI~qlFspfG~I~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 23 SDIYQLFSPFGQIYVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp HHHHHHCCCCCCEEEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred hhHHHHhccCCcEEEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 68888999999998888865 459999999999999999986
No 143
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=46.53 E-value=43 Score=26.18 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHH
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREAL 176 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~ 176 (207)
+.+.++++.|+++. +..+-+.. ...|++-|+|.+.-+.-
T Consensus 32 ~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w~Gf 70 (116)
T PF03468_consen 32 EELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDWSGF 70 (116)
T ss_dssp HHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSHHHH
T ss_pred HHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCChHHH
Confidence 34556667799875 55555443 34699999999876543
No 144
>KOG4574|consensus
Probab=45.83 E-value=15 Score=38.06 Aligned_cols=61 Identities=21% Similarity=0.178 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCce--eCCeEEEEEecCcCcc
Q psy16559 137 DVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRF--YGGKQIRGQFCNVPLW 202 (207)
Q Consensus 137 DV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~--f~GR~I~ae~~~v~~f 202 (207)
-+-.-|.+||.|...+.-++. -.+-|.|.+.+.|..|..+|.|+- --|-+.++.|+.+.-+
T Consensus 314 sL~~l~s~yg~v~s~wtlr~~-----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 314 SLATLCSDYGSVASAWTLRDL-----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred HHHHHHHhhcchhhheecccc-----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 456678999999999986654 347899999999999999999985 4578888888766544
No 145
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=45.52 E-value=53 Score=22.67 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCce
Q psy16559 135 YDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRF 186 (207)
Q Consensus 135 yeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~ 186 (207)
+.++.+-+.++| +....+.- ...-|.||+-+.+.+.|.++...|.-.|
T Consensus 36 i~~~~~~~~~~G-a~~~~~sG---sG~G~~v~~l~~~~~~~~~v~~~l~~~~ 83 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSG---SGGGPTVFALCKDEDDAERVAEALREHY 83 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEET---TSSSSEEEEEESSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCC-CCceecCC---CCCCCeEEEEECCHHHHHHHHHHHHHhC
Confidence 356777778899 66666643 2336899999999999999999886544
No 146
>KOG2333|consensus
Probab=45.23 E-value=16 Score=35.91 Aligned_cols=75 Identities=19% Similarity=0.315 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------c----cCCCCcchhhcccCCCCCC--cccccccccccccc
Q psy16559 16 DIEEKNRQEKEEREAQEKEFKKSIEDFIE-----------G----VCNELPDGFRTNVETKPDK--ELCPFYSKVGACRF 78 (207)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~----~~~~~p~~~~~~~~te~d~--~~C~Fy~K~GaCR~ 78 (207)
.+.++|++.|+++.+...+--+-++.+.. + .+..-+-|+.+-+.|.++- ..||+|.--|.|.+
T Consensus 49 ~~~~~Kr~~k~~~k~~~~k~r~~~q~~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig~~Cp~f~s~G~Cp~ 128 (614)
T KOG2333|consen 49 GETEKKRKRKRERKEGQNKNRDVAQVQNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIGPSCPVFESLGFCPY 128 (614)
T ss_pred cchhhhhhhhhhhhhhccccchhhhhhhccChHhhcCCCccCcccccccccccHHHHHhccCcccCCccceeeccccCCc
Confidence 34566677777776554443333332200 0 2233344454445555433 67999999999999
Q ss_pred cCcccC--CCCCCC
Q psy16559 79 FDHCSR--NHIKPS 90 (207)
Q Consensus 79 GdrCSr--~H~~P~ 90 (207)
|-.|-. .|..+.
T Consensus 129 G~~CRFl~aHld~~ 142 (614)
T KOG2333|consen 129 GFKCRFLGAHLDIE 142 (614)
T ss_pred cceeehhhcccCcc
Confidence 999954 354443
No 147
>KOG4213|consensus
Probab=44.74 E-value=51 Score=28.38 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=34.2
Q ss_pred HhHHHHHHHHHHhcCCeeEEEEccCCC-CC-cceeEEEEeCChHHHHHHHHHhC
Q psy16559 132 VEFYDDVLPELRSLGQVTQFKVCCNKS-PH-LRGNVYVSYSNEREALRAFYALT 183 (207)
Q Consensus 132 deFyeDV~~Ec~kyG~V~~v~V~~n~~-~h-~~G~VyVkF~~~e~A~~Ai~~Ln 183 (207)
+++.+|+..=.+ |.+..|..-.-.. +| -.|-|||.|.+.+.|.++++.=.
T Consensus 120 d~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 120 DDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred HHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhh
Confidence 344556654444 8888887654322 23 47999999999999998776543
No 148
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=44.69 E-value=71 Score=27.64 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=23.3
Q ss_pred HHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy16559 5 EEWEKEQK-----RLRDIEEKNRQEKEEREAQEKEFKKSIEDFIEG 45 (207)
Q Consensus 5 ~e~e~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 45 (207)
.+|.+++. |.+.+++++++.+.+-++.+..+-++.+..++.
T Consensus 115 reWre~~~~~i~ekD~~e~~kk~e~~~~A~k~lddfY~~~~~k~e~ 160 (225)
T PF01086_consen 115 REWREERDKRIEEKDAEEEEKKEEIKEKAKKELDDFYENRNEKKEK 160 (225)
T ss_dssp HHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48998877 333444444555555555566666555555554
No 149
>KOG1365|consensus
Probab=44.46 E-value=32 Score=32.87 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=26.2
Q ss_pred CCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHH
Q psy16559 146 GQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYA 181 (207)
Q Consensus 146 G~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~ 181 (207)
|.+.-+.|. ....++.|-+||.|..+++|+.|+..
T Consensus 191 g~egvLFV~-rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 191 GTEGVLFVT-RPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred CccceEEEE-CCCCCcccceEEEecCHHHHHHHHHH
Confidence 444444444 34467899999999999999999864
No 150
>KOG4307|consensus
Probab=43.78 E-value=14 Score=37.72 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCeeE-EEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQ-FKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~-v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
.+|..-+++--.|++ |.+..-.++.++|.+||.|..++.+.+|...=.--|.+-|+|++.-+
T Consensus 449 ~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 449 VPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred cchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 367777777777777 77777777889999999999999999999998888888899988643
No 151
>KOG1039|consensus
Probab=41.77 E-value=13 Score=34.66 Aligned_cols=25 Identities=36% Similarity=0.954 Sum_probs=21.0
Q ss_pred cccccccccccccccCcccCCCCCCC
Q psy16559 65 ELCPFYSKVGACRFFDHCSRNHIKPS 90 (207)
Q Consensus 65 ~~C~Fy~K~GaCR~GdrCSr~H~~P~ 90 (207)
..|.+| --|.|+||++|--.|.+|.
T Consensus 9 tic~~~-~~g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYY-QKGNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhc-ccccccccceeeeeccCch
Confidence 567754 5699999999999999994
No 152
>KOG2135|consensus
Probab=39.74 E-value=22 Score=34.56 Aligned_cols=58 Identities=19% Similarity=0.301 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
.|+..-|.+||.|..+-|..+. -.+-|.|.+-.+|-.|.. ..|-.|+||.|.+-+-++
T Consensus 388 a~ln~hfA~fG~i~n~qv~~~~-----~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 388 ADLNPHFAQFGEIENIQVDYSS-----LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhhhhhcCccccccccCch-----hhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 6788889999999999997652 236789999999977764 488889999999888544
No 153
>PRK00521 rbfA ribosome-binding factor A; Validated
Probab=39.72 E-value=21 Score=27.73 Aligned_cols=55 Identities=27% Similarity=0.324 Sum_probs=34.2
Q ss_pred cCCeeEEEEccCCCCCcceeEEEEeCC----hHHHHHHHHHhCC--ceeCCeEEEEEecCcCcc
Q psy16559 145 LGQVTQFKVCCNKSPHLRGNVYVSYSN----EREALRAFYALTG--RFYGGKQIRGQFCNVPLW 202 (207)
Q Consensus 145 yG~V~~v~V~~n~~~h~~G~VyVkF~~----~e~A~~Ai~~LnG--R~f~GR~I~ae~~~v~~f 202 (207)
.-.|.+|.|..+ -....|||.+-. .+.+.++++...| |..=|+.|..-+.|.-.|
T Consensus 34 ~vtIt~V~vS~D---l~~AkVyvs~~~~~~~~~~~~~~L~~~~~~iR~~la~~l~lr~~P~L~F 94 (120)
T PRK00521 34 MVTVTDVEVSPD---LAHAKVYVTVLGDEEDKEEALAALKKAAGFLRSELGKRLRLRYVPELRF 94 (120)
T ss_pred eeEEEEEEECCC---CCEEEEEEEECCCchhHHHHHHHHHHhHHHHHHHHHhhCCCccCCEEEE
Confidence 445677777554 346789999853 2445555555555 556666777666776655
No 154
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=39.50 E-value=1.1e+02 Score=21.48 Aligned_cols=18 Identities=39% Similarity=0.517 Sum_probs=16.2
Q ss_pred EEEEeCChHHHHHHHHHh
Q psy16559 165 VYVSYSNEREALRAFYAL 182 (207)
Q Consensus 165 VyVkF~~~e~A~~Ai~~L 182 (207)
+=|-|.+.+.|.+|+.+|
T Consensus 45 cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 45 CNVVFKDEETAARALVAL 62 (62)
T ss_pred EEEEECCHHHHHHHHHcC
Confidence 678899999999999876
No 155
>KOG0804|consensus
Probab=38.29 E-value=45 Score=32.34 Aligned_cols=44 Identities=11% Similarity=0.301 Sum_probs=34.8
Q ss_pred cCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCC
Q psy16559 145 LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGG 189 (207)
Q Consensus 145 yG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~G 189 (207)
.-.|.+|.|.+... .-+=-|-|+|.+..+|..=...+||+-|+.
T Consensus 99 ~~~I~~irivRd~~-pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 99 IKQISDIRIVRDGM-PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred hhhhheeEEeecCC-CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 34688888887421 123348999999999999999999999986
No 156
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=36.63 E-value=83 Score=33.44 Aligned_cols=11 Identities=9% Similarity=-0.037 Sum_probs=5.6
Q ss_pred CCceEEeCCCc
Q psy16559 91 VSKTLLLNNFF 101 (207)
Q Consensus 91 ~S~tllL~NMf 101 (207)
.|..|-+..|=
T Consensus 638 ~~~~~~~~~~~ 648 (1021)
T PTZ00266 638 KSSGVKVEGMG 648 (1021)
T ss_pred ccccccccccc
Confidence 34455555553
No 157
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=35.81 E-value=99 Score=21.92 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhcCCeeEEEEcc
Q psy16559 133 EFYDDVLPELRSLGQVTQFKVCC 155 (207)
Q Consensus 133 eFyeDV~~Ec~kyG~V~~v~V~~ 155 (207)
.+-.+|+..|+..|.|.-+.|-.
T Consensus 6 ~i~~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 6 EITAEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHHHHhcCcEEEEEEcc
Confidence 45589999999999999999954
No 158
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=35.60 E-value=1.2e+02 Score=24.39 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=28.9
Q ss_pred eeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCC
Q psy16559 148 VTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTG 184 (207)
Q Consensus 148 V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnG 184 (207)
|.++.|+.. ..|+|||+-...+++..+++.+.|
T Consensus 36 i~~i~vp~~----fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPE----LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCC----CCcEEEEEEEChHHHHHHHhcCCC
Confidence 778888764 589999999988999999999987
No 159
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=34.75 E-value=67 Score=22.46 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=25.0
Q ss_pred eeEEEEeCChHHHHHHHHHhCCceeCCeEE
Q psy16559 163 GNVYVSYSNEREALRAFYALTGRFYGGKQI 192 (207)
Q Consensus 163 G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I 192 (207)
...+|.|.|..+|.+|-+.|...-+.+|.|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 467999999999999999999876655544
No 160
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=34.12 E-value=19 Score=35.07 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=44.0
Q ss_pred HHhHHHHHHHHHHhcCCeeEEEEccCCCCC----cceeEEEEeCChHHHHHHHHHhCCcee--CCeEE---------EEE
Q psy16559 131 FVEFYDDVLPELRSLGQVTQFKVCCNKSPH----LRGNVYVSYSNEREALRAFYALTGRFY--GGKQI---------RGQ 195 (207)
Q Consensus 131 FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h----~~G~VyVkF~~~e~A~~Ai~~LnGR~f--~GR~I---------~ae 195 (207)
|+-|+-||+.-+.+++ -+.|.+..+-. ..| ..-.+++.|.+++..++.||. +|-.| .+|
T Consensus 391 ~E~FiFDvf~~a~~~~---~~eV~R~~EFaPlKN~~g---~~~Dsp~tar~~l~~~~~~wl~~aG~~~~~~~~~~~~~vE 464 (493)
T PLN02435 391 LEQFIFDAFPYAPSTA---LFEVLREEEFAPVKNANG---SNFDTPESARLLVLRLHTRWVVAAGGFLTHSVPLYATGVE 464 (493)
T ss_pred eeeeeecchhhcCceE---EEEEchhhccCcccCCCC---CCCCCHHHHHHHHHHHHHHHHHHcCCEecCCccccCCcEE
Confidence 5566677777665543 23333321111 123 123889999999999999999 77666 478
Q ss_pred ecCcCccc
Q psy16559 196 FCNVPLWS 203 (207)
Q Consensus 196 ~~~v~~f~ 203 (207)
.+|..+|.
T Consensus 465 isP~~sY~ 472 (493)
T PLN02435 465 VSPLCSYA 472 (493)
T ss_pred eCCceeeC
Confidence 99988775
No 161
>KOG4019|consensus
Probab=33.71 E-value=60 Score=27.89 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=36.9
Q ss_pred hcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCe-EEEEEec
Q psy16559 144 SLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGK-QIRGQFC 197 (207)
Q Consensus 144 kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR-~I~ae~~ 197 (207)
.|-+...+.+.+ +.|.|-|-|.+...|..|...++++-|.|. .+.+-|.
T Consensus 38 q~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 38 QINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred hhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEc
Confidence 444444444432 357899999999999999999999999999 5555553
No 162
>PRK13817 ribosome-binding factor A; Provisional
Probab=33.65 E-value=79 Score=24.73 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=35.5
Q ss_pred hcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhC---C--ceeCCeEEEEEecCcCccc
Q psy16559 144 SLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALT---G--RFYGGKQIRGQFCNVPLWS 203 (207)
Q Consensus 144 kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~Ln---G--R~f~GR~I~ae~~~v~~f~ 203 (207)
++-.|..|.|..+. ....|||.+-...+...++++|| | |..=|+.|...+.|.-.|.
T Consensus 30 ~~vtVt~V~vS~Dl---~~AkVyvs~~~~~~~~~~~~~L~~a~g~iR~~l~~~l~lR~~PeL~F~ 91 (119)
T PRK13817 30 SKISLTAVSISPDL---KQAKVFYSLLENQNEKEVQKALNKATGYLRHLLAQATVLRYVPKLEFV 91 (119)
T ss_pred CceEEeEEEECCCC---CEEEEEEEECCCccHHHHHHHHHHhHHHHHHHHHHhCCCeECCEEEEE
Confidence 35567888886543 35778988765444444444444 4 5556667777777776663
No 163
>PF12278 SDP_N: Sex determination protein N terminal; InterPro: IPR022063 Sex determination proteins are found in eukaryotes. Proteins in this family are typically between 168 and 410 amino acids in length. It plays a role in the gender determination of around 20% of all animals. In the honeybee, the mechanism of sex determination depends on the complementary sex determiner (csd) gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development []. This entry represents the N-terminal end of the sex determination protein.
Probab=33.06 E-value=1.2e+02 Score=25.49 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=17.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16559 4 QEEWEKEQKRLRDIEEKNRQEKEER 28 (207)
Q Consensus 4 ~~e~e~~~~~~~~~~~~~~~~~~~~ 28 (207)
|.||--||+++++.+.-|++.-.|=
T Consensus 40 R~eW~iqQereRehEkLK~k~IlEY 64 (168)
T PF12278_consen 40 RREWMIQQEREREHEKLKQKKILEY 64 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999988888776555544443
No 164
>KOG1672|consensus
Probab=31.34 E-value=45 Score=29.01 Aligned_cols=56 Identities=23% Similarity=0.405 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCc-----chhhcccCCCCCCccccccccc-ccccccCc
Q psy16559 25 KEEREAQEKEFKKSIEDFIEGVCNELP-----DGFRTNVETKPDKELCPFYSKV-GACRFFDH 81 (207)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~~p-----~~~~~~~~te~d~~~C~Fy~K~-GaCR~Gdr 81 (207)
.++|-+++.++.++.+..+.++-...- .++.. .-|...+|.|-||... +-|...|+
T Consensus 43 r~qRl~~lkk~~~kr~~~~~~GhG~y~ev~~Ekdf~~-~~~kS~kVVcHFY~~~f~RCKimDk 104 (211)
T KOG1672|consen 43 REQRLEQLKKEQEKRKEWLSKGHGEYEEVASEKDFFE-EVKKSEKVVCHFYRPEFFRCKIMDK 104 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceEEEeccHHHHHH-HhhcCceEEEEEEcCCCcceehHHH
Confidence 444444555555555555555222211 12222 3346789999999996 88877764
No 165
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=31.04 E-value=1.4e+02 Score=23.28 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=24.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q psy16559 5 EEWEKEQKRLRDIEEKNRQEKEER--EAQEKEFKKSIED 41 (207)
Q Consensus 5 ~e~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 41 (207)
..||..|+-+-+.+=++.+.+.|+ ..++++|.+++..
T Consensus 32 ~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~ 70 (111)
T PF03763_consen 32 QAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIAR 70 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359988887666666665555554 5566777666543
No 166
>KOG1999|consensus
Probab=30.49 E-value=88 Score=33.07 Aligned_cols=35 Identities=14% Similarity=0.316 Sum_probs=29.9
Q ss_pred CCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEE
Q psy16559 159 PHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRG 194 (207)
Q Consensus 159 ~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~a 194 (207)
+|++|+|||+=..+..-..|++.|-|=|-+ +++.+
T Consensus 207 D~lkGyIYIEA~KqshV~~Ai~gv~niy~~-~~~lV 241 (1024)
T KOG1999|consen 207 DHLKGYIYIEADKQSHVKEAIEGVRNIYAN-RILLV 241 (1024)
T ss_pred cccceeEEEEechhHHHHHHHhhhhhheec-cEEEE
Confidence 689999999999999999999999887665 66544
No 167
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=29.55 E-value=1.2e+02 Score=21.40 Aligned_cols=58 Identities=10% Similarity=0.165 Sum_probs=39.5
Q ss_pred HHHHHHHHhcC-CeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEe
Q psy16559 136 DDVLPELRSLG-QVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQF 196 (207)
Q Consensus 136 eDV~~Ec~kyG-~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~ 196 (207)
++|.+++.+.| +|..|.-..+. +..+.--+||......+ .-+.++=+..+|..|.+|-
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~ 61 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVER 61 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEec
Confidence 57899999999 56666555443 33445668888877655 3345666777888888764
No 168
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=29.22 E-value=35 Score=31.58 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=19.4
Q ss_pred ccccccccccccccCcccCCCCC
Q psy16559 66 LCPFYSKVGACRFFDHCSRNHIK 88 (207)
Q Consensus 66 ~C~Fy~K~GaCR~GdrCSr~H~~ 88 (207)
.|.=..|.|.||+|-||-..|--
T Consensus 276 Pcinwe~sGyc~yg~Rc~F~hgd 298 (351)
T COG5063 276 PCINWEKSGYCPYGLRCCFKHGD 298 (351)
T ss_pred CccchhhcccCccccccccccCC
Confidence 47777889999999999988853
No 169
>KOG2891|consensus
Probab=29.04 E-value=9.2 Score=35.11 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=32.7
Q ss_pred HHHHHHhcCCeeEEEE--ccCCC----C-------Ccce-------eEEEEeCChHHHHHHHHHhCCceeC
Q psy16559 138 VLPELRSLGQVTQFKV--CCNKS----P-------HLRG-------NVYVSYSNEREALRAFYALTGRFYG 188 (207)
Q Consensus 138 V~~Ec~kyG~V~~v~V--~~n~~----~-------h~~G-------~VyVkF~~~e~A~~Ai~~LnGR~f~ 188 (207)
++.-+++||.|..|-| |+..- + |.-| -+||+|..--.-..|+.+|.|+..+
T Consensus 178 lr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~a 248 (445)
T KOG2891|consen 178 LRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLA 248 (445)
T ss_pred HHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHH
Confidence 4456789999877766 44311 1 1111 1488888877778888888877553
No 170
>KOG0129|consensus
Probab=28.52 E-value=1.7e+02 Score=28.90 Aligned_cols=72 Identities=17% Similarity=0.263 Sum_probs=47.3
Q ss_pred ccccCcccCCCCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEcc
Q psy16559 76 CRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCC 155 (207)
Q Consensus 76 CR~GdrCSr~H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~ 155 (207)
|-.|.++.+.+..|..|+-|.+-.+ ++++ +++ .|..-+..||.| .|..
T Consensus 243 ~~~~~~~~~~~~~~~~S~KVFvGGl--p~di----------------se~-----------~i~~~F~~FGs~---~VdW 290 (520)
T KOG0129|consen 243 TWSGSLPPRGYRSPRYSRKVFVGGL--PWDI----------------TEA-----------QINASFGQFGSV---KVDW 290 (520)
T ss_pred hhccccCCCCCCccccccceeecCC--Cccc----------------cHH-----------HHHhhcccccce---Eeec
Confidence 7778899999999999998887765 2232 332 344445566765 3322
Q ss_pred C--C----CCCcce---eEEEEeCChHHHHHHH
Q psy16559 156 N--K----SPHLRG---NVYVSYSNEREALRAF 179 (207)
Q Consensus 156 n--~----~~h~~G---~VyVkF~~~e~A~~Ai 179 (207)
. . .-++.| +||+-|+++.+-..=+
T Consensus 291 P~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll 323 (520)
T KOG0129|consen 291 PGKANSRGRAPPKGSYGYVFLVFEDERSVQSLL 323 (520)
T ss_pred CCCccccccCCCCCcccEEEEEecchHHHHHHH
Confidence 1 1 124567 9999999998765433
No 171
>KOG1457|consensus
Probab=27.66 E-value=1e+02 Score=27.57 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCce
Q psy16559 137 DVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRF 186 (207)
Q Consensus 137 DV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~ 186 (207)
+++.-++.|--...++|-...+ .-.+||.|++.+.|..|+..|.|-.
T Consensus 226 ~l~~~~~~~~gf~~l~~~~~~g---~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 226 ELKQLLSRYPGFHILKIRARGG---MPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred HHHHHHHhCCCceEEEEecCCC---cceEeecHHHHHHHHHHHHHhhcce
Confidence 4455667888887788743221 3468999999999999999998753
No 172
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=27.66 E-value=98 Score=31.09 Aligned_cols=8 Identities=25% Similarity=0.227 Sum_probs=5.0
Q ss_pred CCcchhhc
Q psy16559 49 ELPDGFRT 56 (207)
Q Consensus 49 ~~p~~~~~ 56 (207)
-||.++-.
T Consensus 591 i~p~~~f~ 598 (651)
T PTZ00399 591 IPPAEFFK 598 (651)
T ss_pred CCHHHHhh
Confidence 46777654
No 173
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=27.63 E-value=1.4e+02 Score=25.49 Aligned_cols=6 Identities=33% Similarity=0.424 Sum_probs=2.0
Q ss_pred HHHHHH
Q psy16559 34 EFKKSI 39 (207)
Q Consensus 34 ~~l~~~ 39 (207)
++++++
T Consensus 120 e~we~~ 125 (190)
T PF06936_consen 120 EMWESM 125 (190)
T ss_dssp HHHHH-
T ss_pred HHHHHH
Confidence 334444
No 174
>KOG1595|consensus
Probab=26.99 E-value=33 Score=33.65 Aligned_cols=22 Identities=36% Similarity=0.723 Sum_probs=16.8
Q ss_pred cccccccccccccccCcccCCCC
Q psy16559 65 ELCPFYSKVGACRFFDHCSRNHI 87 (207)
Q Consensus 65 ~~C~Fy~K~GaCR~GdrCSr~H~ 87 (207)
+.||=|-| |.|+-||.|---|-
T Consensus 237 tpCPefrk-G~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 237 TPCPEFRK-GSCERGDSCEYAHG 258 (528)
T ss_pred ccCccccc-CCCCCCCccccccc
Confidence 56776666 99999999965553
No 175
>PRK06545 prephenate dehydrogenase; Validated
Probab=26.72 E-value=1.3e+02 Score=27.31 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=41.1
Q ss_pred HHHHHHHHhcC-CeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCcee
Q psy16559 136 DDVLPELRSLG-QVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFY 187 (207)
Q Consensus 136 eDV~~Ec~kyG-~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f 187 (207)
..|...+...| .|.++.|-.+. +...|.+-+.|.+.+++.+|...|...|.
T Consensus 305 ~~~~~~~~~~~i~i~~~~i~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
T PRK06545 305 ARVTAILGEEGISIENLRILEAR-EDIHGVLQISFKNEEDRERAKALLEEFWT 356 (359)
T ss_pred HHHHHHHHHcCCCeecceeeecc-CCcCceEEEEeCCHHHHHHHHHHHHhcCc
Confidence 35667777777 57888886654 35679999999999999999999988875
No 176
>COG0858 RbfA Ribosome-binding factor A [Translation, ribosomal structure and biogenesis]
Probab=26.38 E-value=51 Score=25.87 Aligned_cols=63 Identities=25% Similarity=0.204 Sum_probs=41.5
Q ss_pred HHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCC--h---HHHHHHHHHhCC--ceeCCeEEEEEecCcCccc
Q psy16559 138 VLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSN--E---REALRAFYALTG--RFYGGKQIRGQFCNVPLWS 203 (207)
Q Consensus 138 V~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~--~---e~A~~Ai~~LnG--R~f~GR~I~ae~~~v~~f~ 203 (207)
|.+.--+.+.|++|.|..+. ..-.|||.+-. . +.+.+|++.-.| |-+-|+.+..-++|.-.|.
T Consensus 26 ikDprl~~~~Vt~V~vS~Dl---~~A~Vyvt~l~~~~~~~~~~~~~L~~A~g~ir~~l~~~~~lr~~PeL~F~ 95 (118)
T COG0858 26 IKDPRLGLVTVTDVEVSKDL---SHAKVYVTVLGDEESSKAEILAALNKAKGFIRSELGKRLRLRKTPELHFV 95 (118)
T ss_pred ccCCCcCceEEEEEEEcCCC---ceEEEEEEecCCchhhHHHHHHHHHHhHHHHHHHHHHhCCeEeCCeEEEE
Confidence 33333356668888886543 46789999633 2 233455555556 7778888888888887774
No 177
>PF12230 PRP21_like_P: Pre-mRNA splicing factor PRP21 like protein; InterPro: IPR022030 This domain family is found in eukaryotes, and is typically between 212 and 238 amino acids in length. The family is found in association with PF01805 from PFAM. There are two completely conserved residues (W and H) that may be functionally important. PRP21 is required for assembly of the prespliceosome and it interacts with U2 snRNP and/or pre-mRNA in the prespliceosome. This family also contains proteins similar to PRP21, such as the mammalian SF3a. SF3a also interacts with U2 snRNP from the prespliceosome, converting it to its active form. ; PDB: 4DGW_B.
Probab=26.02 E-value=89 Score=26.71 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=10.2
Q ss_pred HHHHHHHHHhHHHHH
Q psy16559 4 QEEWEKEQKRLRDIE 18 (207)
Q Consensus 4 ~~e~e~~~~~~~~~~ 18 (207)
|.||++.++.++..+
T Consensus 26 Raew~k~~~~~k~k~ 40 (229)
T PF12230_consen 26 RAEWEKYQEEEKKKE 40 (229)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 678998887554433
No 178
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=25.77 E-value=53 Score=31.87 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=46.5
Q ss_pred HHhHHHHHHHHHHhcCCeeEEEEccCCCCC----cceeEEEEeCChHHHHHHHHHhCCcee--CCeEE---------EEE
Q psy16559 131 FVEFYDDVLPELRSLGQVTQFKVCCNKSPH----LRGNVYVSYSNEREALRAFYALTGRFY--GGKQI---------RGQ 195 (207)
Q Consensus 131 FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h----~~G~VyVkF~~~e~A~~Ai~~LnGR~f--~GR~I---------~ae 195 (207)
|+-|+=||+.-+.+++.+ .|.+..+-. ..|.. -.+++.|.+++..|+.||. +|-.+ .+|
T Consensus 382 ~E~FiFDvf~~~~~~~~~---ev~R~~eFsPlKNa~g~~---~d~p~tar~~l~~~~~~wl~~ag~~~~~~~~~~~~~~E 455 (482)
T PTZ00339 382 LEAFIFDIFRYAKNVLIL---EVDREDEFAPIKNADGAA---ADTILNAQKLLLSLHTRWLEAALETVAGNPREGLNLCE 455 (482)
T ss_pred ehhhhhhHHHhcccccee---eechhhccccccCCCCCC---CCCHHHHHHHHHHHHHHHHHHCCCeeeccccCCCceEE
Confidence 677999999988766644 344332111 12321 3789999999999999998 66644 468
Q ss_pred ecCcCccc
Q psy16559 196 FCNVPLWS 203 (207)
Q Consensus 196 ~~~v~~f~ 203 (207)
.||..+|.
T Consensus 456 isp~~sy~ 463 (482)
T PTZ00339 456 ISPLVSYG 463 (482)
T ss_pred ecCcceeC
Confidence 89888774
No 179
>PF10197 Cir_N: N-terminal domain of CBF1 interacting co-repressor CIR; InterPro: IPR019339 This entry represents a 45 residue conserved region at the N-terminal end of a family of proteins referred to as CIRs (CBF1-interacting co-repressors). CBF1 (centromere-binding factor 1) acts as a transcription factor that causes repression by binding specifically to GTGGGAA motifs in responsive promoters, and it requires CIR as a co-repressor. CIR binds to histone deacetylase and to SAP30 and serves as a linker between CBF1 and the histone deacetylase complex []. It may also modulate splice site selection during alternative splicing of pre-mRNAs.
Probab=25.12 E-value=1e+02 Score=19.40 Aligned_cols=9 Identities=44% Similarity=0.796 Sum_probs=5.2
Q ss_pred HHHHHHhHH
Q psy16559 7 WEKEQKRLR 15 (207)
Q Consensus 7 ~e~~~~~~~ 15 (207)
|+++|+...
T Consensus 14 w~aEq~~~~ 22 (37)
T PF10197_consen 14 WKAEQKAEE 22 (37)
T ss_pred HHHHHHHHH
Confidence 666666433
No 180
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=24.50 E-value=1.5e+02 Score=23.86 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcchh
Q psy16559 19 EKNRQEKEEREAQEKEFKKSIEDFIEGVCNELPDGF 54 (207)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~ 54 (207)
++.++++.+++++++++.+.|..+ .-.|.+|
T Consensus 45 ~~~~~~~~er~~~l~~i~~~~~~~-----Git~eeL 75 (134)
T PRK10328 45 EQQQRELAERQEKINTWLELMKAD-----GINPEEL 75 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----CCCHHHH
Confidence 334455566777777777766652 2345566
No 181
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=24.13 E-value=1.4e+02 Score=21.59 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=40.3
Q ss_pred HHHHHHHHhcC-CeeEEEEccCCC-CCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLG-QVTQFKVCCNKS-PHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG-~V~~v~V~~n~~-~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
..|.+++.++| +|..+....+.. ..+.--.+|.-...-+-.. .|+=+..+|+.|.+|=-
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 35788999999 577777766542 3445557777766543333 77778889999888743
No 182
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=23.72 E-value=3e+02 Score=24.32 Aligned_cols=6 Identities=50% Similarity=1.498 Sum_probs=3.3
Q ss_pred HHHHHH
Q psy16559 5 EEWEKE 10 (207)
Q Consensus 5 ~e~e~~ 10 (207)
++|+..
T Consensus 187 q~W~~k 192 (264)
T PF13904_consen 187 QEWERK 192 (264)
T ss_pred HHHHHH
Confidence 467643
No 183
>KOG3323|consensus
Probab=23.49 E-value=1.9e+02 Score=23.79 Aligned_cols=51 Identities=16% Similarity=0.322 Sum_probs=31.9
Q ss_pred cccccccChHHHHHHHHhHHHHHHHHH-------HhcCCeeEEEEccCCCCCcceeEEEEeCCh
Q psy16559 116 TDINLEFDETEMHKYFVEFYDDVLPEL-------RSLGQVTQFKVCCNKSPHLRGNVYVSYSNE 172 (207)
Q Consensus 116 ~d~~le~~~eel~~~FdeFyeDV~~Ec-------~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~ 172 (207)
||-++.+..++..+.|..|.+-+..+. ++||....|.+..| |=|.|.|++.
T Consensus 91 pdfH~am~~~ea~elY~qfl~~l~k~~~~~~ikdG~fGamm~v~l~n~------GPvTi~~es~ 148 (149)
T KOG3323|consen 91 PDFHLAMKGEEAKELYNQFLELLRKAYGADKIKDGKFGAMMQVHLVND------GPVTILLESP 148 (149)
T ss_pred cchhhhcCchhhHHHHHHHHHHHHHHhCchhhhccccceEEEEEEecC------CCeEEEecCC
Confidence 344444455666666666665555544 46888888887654 5677777764
No 184
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=23.41 E-value=40 Score=18.26 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=8.7
Q ss_pred CCCcccc-ccccc
Q psy16559 62 PDKELCP-FYSKV 73 (207)
Q Consensus 62 ~d~~~C~-Fy~K~ 73 (207)
.++..|. ||+|+
T Consensus 2 ~~k~~CknffWK~ 14 (18)
T PF03002_consen 2 ERKAGCKNFFWKT 14 (18)
T ss_pred cccccccceeecc
Confidence 4677784 88886
No 185
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=23.18 E-value=3.3e+02 Score=23.13 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=9.5
Q ss_pred CCCccccccccccc
Q psy16559 62 PDKELCPFYSKVGA 75 (207)
Q Consensus 62 ~d~~~C~Fy~K~Ga 75 (207)
..+.--|||-|-|.
T Consensus 201 ~~~~f~pF~~k~~~ 214 (216)
T PF11600_consen 201 YEKKFLPFFVKDDM 214 (216)
T ss_pred hhccccCceecCCc
Confidence 45567788887664
No 186
>PF04795 PAPA-1: PAPA-1-like conserved region; InterPro: IPR006880 This is a group of proteins with a conserved C-terminal region which is found in PAPA-1, a PAP-1 binding protein, Q9C086 from SWISSPROT.
Probab=22.97 E-value=1.6e+02 Score=21.86 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16559 23 QEKEEREAQEKEFKKSIE 40 (207)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~ 40 (207)
+..+++.+.+.++|++..
T Consensus 20 k~EEeK~eTInKLLkkqa 37 (89)
T PF04795_consen 20 KLEEEKMETINKLLKKQA 37 (89)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 344566778889988766
No 187
>COG4334 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.81 E-value=3.1e+02 Score=21.91 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=29.9
Q ss_pred ceeEEEEeCChHHH---HHHHHHhCCce-eCCeEEEEEecCcCc
Q psy16559 162 RGNVYVSYSNEREA---LRAFYALTGRF-YGGKQIRGQFCNVPL 201 (207)
Q Consensus 162 ~G~VyVkF~~~e~A---~~Ai~~LnGR~-f~GR~I~ae~~~v~~ 201 (207)
.|-.||.=-+-... +.|+..=.||- -+|..-.++|-||++
T Consensus 45 DgdLyVrgy~G~aSrWyqaA~~qraGrItaaG~t~~V~FEPVtg 88 (131)
T COG4334 45 DGDLYVRGYRGRASRWYQAAMIQRAGRITAAGKTYQVEFEPVTG 88 (131)
T ss_pred CCceEEeecCcchhHHHHHHHHhhCCeEEecceEEEEEEeeccc
Confidence 46678875554432 67788888874 689999999999986
No 188
>PF02033 RBFA: Ribosome-binding factor A; InterPro: IPR000238 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosome-binding factor A [] (gene rbfA) is a bacterial protein that associates with free 30S ribosomal subunits. It does not associate with 30S subunits that are part of 70S ribosomes or polysomes. It is essential for efficient processing of 16S rRNA. Ribosome-binding factor A is a protein of from 13 to 15 Kd which is found in most bacteria. A putative chloroplastic form seems to exist in plants.; GO: 0006364 rRNA processing; PDB: 2R1C_A 2DYJ_B 2KZF_A 2E7G_A 1JOS_A 1KKG_A 1PA4_A.
Probab=22.77 E-value=2.1e+02 Score=21.21 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=26.0
Q ss_pred hcCCeeEEEEccCCCCCcceeEEEEeC-ChHHHHHHHHHhCC
Q psy16559 144 SLGQVTQFKVCCNKSPHLRGNVYVSYS-NEREALRAFYALTG 184 (207)
Q Consensus 144 kyG~V~~v~V~~n~~~h~~G~VyVkF~-~~e~A~~Ai~~LnG 184 (207)
..-.|.+|.+..+. ..-.|||.+- +..+-..+++.||.
T Consensus 27 ~~vtIt~V~ls~Dl---~~a~Vy~~~~~~~~~~~~~~~~L~~ 65 (104)
T PF02033_consen 27 KLVTITRVELSPDL---SHAKVYVSILGDEEEQEEVLEALNK 65 (104)
T ss_dssp HCEEEEEEEECTTS---SEEEEEEEESSSHHHHHHHHHHHHH
T ss_pred ceEEEEEEEECCCC---CEEEEEEEEecCchhHHHHHHHHHH
Confidence 34467788886543 4678999986 66666677666654
No 189
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=22.06 E-value=1.7e+02 Score=23.58 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcchhh
Q psy16559 18 EEKNRQEKEEREAQEKEFKKSIEDFIEGVCNELPDGFR 55 (207)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~ 55 (207)
++..+++.+++++++++++..|..+ .-.|.+|.
T Consensus 44 ~~~~~~~~~er~~kl~~~r~~m~~~-----Gis~~eL~ 76 (135)
T PRK10947 44 ESAAAAEVEERTRKLQQYREMLIAD-----GIDPNELL 76 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-----CCCHHHHh
Confidence 3344555666777777777766652 23455653
No 190
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=21.74 E-value=2.6e+02 Score=25.79 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=11.6
Q ss_pred HHHHHHHHHhHHHHHHH
Q psy16559 4 QEEWEKEQKRLRDIEEK 20 (207)
Q Consensus 4 ~~e~e~~~~~~~~~~~~ 20 (207)
|-+||-.+|++-.++-+
T Consensus 95 RL~~EL~~Rk~L~~~~~ 111 (355)
T PF09766_consen 95 RLEFELEQRKRLEEQLK 111 (355)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67899888865554443
No 191
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=21.55 E-value=2.1e+02 Score=23.94 Aligned_cols=43 Identities=23% Similarity=0.459 Sum_probs=25.3
Q ss_pred cChHHHHHHHHhHHHHHHHHHH-hcC--CeeEEEEccC-CCCCcceeEEEEe
Q psy16559 122 FDETEMHKYFVEFYDDVLPELR-SLG--QVTQFKVCCN-KSPHLRGNVYVSY 169 (207)
Q Consensus 122 ~~~eel~~~FdeFyeDV~~Ec~-kyG--~V~~v~V~~n-~~~h~~G~VyVkF 169 (207)
++.+++.++| ++....|. +|| .|...+|..+ .++|+-.. +|-.
T Consensus 95 ~~~e~~~~~~----~~~~~~~~~r~g~~ni~~a~vH~DE~tPH~H~~-~vP~ 141 (196)
T PF01076_consen 95 LDPEQQKRWF----EDSLEWLQERYGNENIVSAVVHLDETTPHMHFD-VVPI 141 (196)
T ss_pred hhhHHHHHHH----HHHHHHHHHHCCchhEEEEEEECCCCCcceEEE-Eeec
Confidence 3445555544 55555554 799 7888888654 56777533 4443
No 192
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=21.45 E-value=1.7e+02 Score=21.41 Aligned_cols=22 Identities=18% Similarity=0.438 Sum_probs=13.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q psy16559 7 WEKEQKRLRDIEEKNRQEKEER 28 (207)
Q Consensus 7 ~e~~~~~~~~~~~~~~~~~~~~ 28 (207)
|--.+.-+++|+++|+++|+..
T Consensus 42 wkLaK~ie~~ere~K~k~Kr~~ 63 (74)
T PF15086_consen 42 WKLAKAIEKEEREKKKKAKRQA 63 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666667777776665543
No 193
>PRK13818 ribosome-binding factor A; Provisional
Probab=21.22 E-value=76 Score=24.93 Aligned_cols=56 Identities=18% Similarity=0.130 Sum_probs=35.6
Q ss_pred hcCCeeEEEEccCCCCCcceeEEEEeCC--hH---HHHHHHHHhCC--ceeCCeEEEEEecCcCcc
Q psy16559 144 SLGQVTQFKVCCNKSPHLRGNVYVSYSN--ER---EALRAFYALTG--RFYGGKQIRGQFCNVPLW 202 (207)
Q Consensus 144 kyG~V~~v~V~~n~~~h~~G~VyVkF~~--~e---~A~~Ai~~LnG--R~f~GR~I~ae~~~v~~f 202 (207)
++-.|..|.|..+. ..-.|||.+-. .. .+.++++...| |..=|+.|..-+.|.-.|
T Consensus 30 ~~vtVt~V~lS~Dl---~~AkVyvs~~~~~~~~~~~~~~~L~~a~g~iR~~la~~l~lR~~P~L~F 92 (121)
T PRK13818 30 SDVTITAVECTNDL---SYATVYYSLLTEDEAKEKEVQEGLEKAKGMMRHLLGQTLTVYKVPELIF 92 (121)
T ss_pred CceEEeEEEECCCC---CEEEEEEEeCCCchhHHHHHHHHHHHhHHHHHHHHHhhCCCeECCEEEE
Confidence 35677788886543 45789999864 22 34455555555 555667777777776655
No 194
>PF05178 Kri1: KRI1-like family; InterPro: IPR018034 The Kri1 protein is also known as KRR1-interacting protein 1. The Saccharomyces cerevisiae member of this family is found to be required for the assembly of preribosomal 40S subunits in the nucleolus []. KRR1 is highly expressed in dividing cells and its expression ceases almost completely when cells enter the stationary phase.
Probab=21.18 E-value=2.1e+02 Score=21.86 Aligned_cols=13 Identities=31% Similarity=0.846 Sum_probs=7.1
Q ss_pred HHHHHHHH-hHHHH
Q psy16559 125 TEMHKYFV-EFYDD 137 (207)
Q Consensus 125 eel~~~Fd-eFyeD 137 (207)
..++..|. ++|..
T Consensus 61 ~~M~~~F~d~YY~~ 74 (101)
T PF05178_consen 61 RKMQKIFNDDYYEQ 74 (101)
T ss_pred HHHHHHhhhhhhhh
Confidence 45666675 34444
No 195
>KOG2193|consensus
Probab=21.18 E-value=9.9 Score=36.67 Aligned_cols=124 Identities=18% Similarity=0.232 Sum_probs=81.4
Q ss_pred Hhhc-cCCCCcchhhcccCCCCCCcccccccccccccccCcccCCCC--CCC------------------------CCce
Q psy16559 42 FIEG-VCNELPDGFRTNVETKPDKELCPFYSKVGACRFFDHCSRNHI--KPS------------------------VSKT 94 (207)
Q Consensus 42 ~~~~-~~~~~p~~~~~~~~te~d~~~C~Fy~K~GaCR~GdrCSr~H~--~P~------------------------~S~t 94 (207)
|++| +.--||++|..+++-.+--.+=+|..|.|.-+ +| |+-.|- +|. .|+-
T Consensus 5 yignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyaf-vd-~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsrk 82 (584)
T KOG2193|consen 5 YIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAF-VD-CPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSRK 82 (584)
T ss_pred cccccCCCCChHHHHHHhccccCCCCcceeeecceee-cc-CCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhhh
Confidence 4555 33468999999999888888888999988644 33 443332 111 1222
Q ss_pred EEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHH-HHhcCCeeEEEEccCCCCCcceeEEEEeCChH
Q psy16559 95 LLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPE-LRSLGQVTQFKVCCNKSPHLRGNVYVSYSNER 173 (207)
Q Consensus 95 llL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~E-c~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e 173 (207)
+-|+|+-+ .++ -+|..- +..||.|.++.+..- +.-.-.|-|.|.+.+
T Consensus 83 ~Qirnipp-----------------------ql~-------wevld~Ll~qyg~ve~~eqvnt--~~etavvnvty~~~~ 130 (584)
T KOG2193|consen 83 IQIRNIPP-----------------------QLQ-------WEVLDSLLAQYGTVENCEQVNT--DSETAVVNVTYSAQQ 130 (584)
T ss_pred hhHhcCCH-----------------------HHH-------HHHHHHHHhccCCHhHhhhhcc--chHHHHHHHHHHHHH
Confidence 23332211 111 234443 358999999877432 223455778999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 174 EALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 174 ~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
.+..|+..|||--+....+.+.|.|-
T Consensus 131 ~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 131 QHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred HHHHHHHhhcchHhhhhhhhcccCch
Confidence 99999999999998888888888765
No 196
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=21.04 E-value=64 Score=23.52 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.0
Q ss_pred ceeEEEEeCChHHHHHHHHHhCC
Q psy16559 162 RGNVYVSYSNEREALRAFYALTG 184 (207)
Q Consensus 162 ~G~VyVkF~~~e~A~~Ai~~LnG 184 (207)
.|+|||+....++...++..+.|
T Consensus 59 pGYvFv~~~~~~~~~~~i~~~~~ 81 (106)
T smart00738 59 PGYIFVEADLEDEVWTAIRGTPG 81 (106)
T ss_pred CCEEEEEEEeCCcHHHHHhcCCC
Confidence 39999999888878888988887
No 197
>KOG0386|consensus
Probab=20.66 E-value=1.2e+02 Score=32.57 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=33.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16559 4 QEEWEKEQKRLRDIEEKNRQEKEEREAQEKEFKKSIEDF 42 (207)
Q Consensus 4 ~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 42 (207)
..||+.+++-++.++++..+.|.+-+++--+|+|+.++.
T Consensus 277 ~~er~~~r~~~r~ek~r~~~Lk~~DeE~Y~kl~dq~Kd~ 315 (1157)
T KOG0386|consen 277 NQERERERRIDRIEKERASALKHNDEEGYRKLQDQKKDN 315 (1157)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhcccc
Confidence 368999999999999999999999999999988865543
No 198
>KOG4660|consensus
Probab=20.40 E-value=99 Score=30.61 Aligned_cols=31 Identities=16% Similarity=0.489 Sum_probs=26.0
Q ss_pred ceeEEEEeCChHHHHHHHHHhCCc---eeCCeEE
Q psy16559 162 RGNVYVSYSNEREALRAFYALTGR---FYGGKQI 192 (207)
Q Consensus 162 ~G~VyVkF~~~e~A~~Ai~~LnGR---~f~GR~I 192 (207)
.|++||-|.+.+++..+.+++||. -|++..|
T Consensus 431 vGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Ki 464 (549)
T KOG4660|consen 431 VGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKI 464 (549)
T ss_pred cceeEEeecCHHHHHHHHHHHcCCchhhhcceee
Confidence 799999999999999999999993 2555444
No 199
>TIGR00082 rbfA ribosome-binding factor A. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'terminal helix region of 16S rRNA. Mutants lacking rbfA have a cold-sensitive phenotype.
Probab=20.04 E-value=2e+02 Score=22.17 Aligned_cols=53 Identities=23% Similarity=0.195 Sum_probs=32.6
Q ss_pred CeeEEEEccCCCCCcceeEEEEeCC-hHHHHHHHHHhCC-----ceeCCeEEEEEecCcCcc
Q psy16559 147 QVTQFKVCCNKSPHLRGNVYVSYSN-EREALRAFYALTG-----RFYGGKQIRGQFCNVPLW 202 (207)
Q Consensus 147 ~V~~v~V~~n~~~h~~G~VyVkF~~-~e~A~~Ai~~LnG-----R~f~GR~I~ae~~~v~~f 202 (207)
.|..|.|..+ -....|||.+-. ......+++.||. |..=|+.|..-+.|.-.|
T Consensus 34 tVt~V~lS~D---l~~AkVyvs~~~~~~~~~~~l~~L~~~~g~iR~~l~k~l~lR~~P~L~F 92 (114)
T TIGR00082 34 TVTKVEVSKD---LQHAKVFVDCYGDEEAIDRVVKALNKAKGFIRSLLGQAMRLRKTPELHF 92 (114)
T ss_pred EEeEEEECCC---CCEEEEEEEECCChhhHHHHHHHHHHHHHHHHHHHHhhCCceECCEEEE
Confidence 5666666543 346789999873 3333555555543 455566777777776665
Done!