Query psy16559
Match_columns 207
No_of_seqs 259 out of 871
Neff 5.5
Searched_HMMs 29240
Date Sat Aug 17 00:16:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jmt_A Splicing factor U2AF 35 99.9 6.5E-28 2.2E-32 182.5 9.1 103 92-198 1-104 (104)
2 3v4m_A Splicing factor U2AF 65 99.9 7.6E-25 2.6E-29 166.0 10.5 96 90-204 3-101 (105)
3 3s6e_A RNA-binding protein 39; 99.9 4.5E-25 1.6E-29 170.4 9.2 96 87-204 2-97 (114)
4 3ue2_A Poly(U)-binding-splicin 99.9 1.7E-24 5.7E-29 168.0 6.6 92 89-204 17-113 (118)
5 2pe8_A Splicing factor 45; RRM 99.9 2E-23 6.9E-28 158.3 8.7 95 87-205 3-99 (105)
6 2dit_A HIV TAT specific factor 99.9 3.6E-21 1.2E-25 145.5 11.6 104 80-204 3-107 (112)
7 3dxb_A Thioredoxin N-terminall 99.8 3.8E-20 1.3E-24 154.0 8.4 93 88-204 120-217 (222)
8 3u1l_A PRE-mRNA-splicing facto 99.7 3.1E-17 1.1E-21 141.5 6.8 128 65-199 71-228 (240)
9 3s8s_A Histone-lysine N-methyl 99.4 5E-13 1.7E-17 101.2 10.5 64 136-199 21-85 (110)
10 3mdf_A Peptidyl-prolyl CIS-tra 99.4 6.6E-13 2.2E-17 93.8 9.3 81 88-197 3-84 (85)
11 2cqc_A Arginine/serine-rich sp 99.4 1.3E-12 4.3E-17 94.1 10.8 84 86-198 9-93 (95)
12 2ywk_A Putative RNA-binding pr 99.4 1.6E-12 5.4E-17 93.8 10.0 63 136-198 31-93 (95)
13 2e5h_A Zinc finger CCHC-type a 99.4 2.5E-12 8.5E-17 92.6 10.6 82 87-197 11-93 (94)
14 4fxv_A ELAV-like protein 1; RN 99.4 2.2E-12 7.4E-17 95.6 10.5 63 136-198 34-97 (99)
15 2do4_A Squamous cell carcinoma 99.4 3.3E-12 1.1E-16 93.3 11.1 64 136-199 32-95 (100)
16 2dnz_A Probable RNA-binding pr 99.4 2.1E-12 7.2E-17 93.2 9.5 82 89-199 2-84 (95)
17 3ulh_A THO complex subunit 4; 99.4 3.4E-12 1.1E-16 94.1 10.8 63 136-198 44-106 (107)
18 3bs9_A Nucleolysin TIA-1 isofo 99.4 3.1E-12 1E-16 90.7 10.1 63 136-198 21-84 (87)
19 1whw_A Hypothetical protein ri 99.4 3.6E-12 1.2E-16 92.8 10.2 65 136-200 23-88 (99)
20 2la6_A RNA-binding protein FUS 99.4 3.2E-12 1.1E-16 93.4 10.0 84 85-197 6-98 (99)
21 3md1_A Nuclear and cytoplasmic 99.4 4E-12 1.4E-16 89.4 9.9 63 136-198 16-79 (83)
22 2lxi_A RNA-binding protein 10; 99.4 8.5E-13 2.9E-17 96.2 6.6 63 136-198 16-81 (91)
23 1x5t_A Splicing factor 3B subu 99.4 2.3E-12 7.8E-17 93.1 8.8 65 136-200 20-86 (96)
24 2x1f_A MRNA 3'-END-processing 99.4 5E-12 1.7E-16 91.8 10.6 65 136-200 17-82 (96)
25 4f25_A Polyadenylate-binding p 99.4 2.2E-12 7.4E-17 97.5 9.0 80 89-198 2-81 (115)
26 2cq3_A RNA-binding protein 9; 99.4 7.2E-12 2.5E-16 91.9 11.4 84 86-199 9-92 (103)
27 2d9p_A Polyadenylate-binding p 99.4 3.1E-12 1.1E-16 93.9 9.1 83 87-199 10-92 (103)
28 1x5u_A Splicing factor 3B subu 99.3 5.3E-12 1.8E-16 92.7 10.1 84 87-199 10-94 (105)
29 2dgo_A Cytotoxic granule-assoc 99.3 8.1E-12 2.8E-16 93.4 11.2 84 87-199 10-94 (115)
30 2e5j_A Methenyltetrahydrofolat 99.3 2.9E-12 9.8E-17 93.5 8.5 93 74-199 1-93 (97)
31 2do0_A HnRNP M, heterogeneous 99.3 8.1E-12 2.8E-16 93.1 11.1 64 136-199 30-93 (114)
32 2cpi_A CCR4-NOT transcription 99.3 4.4E-12 1.5E-16 95.1 9.6 64 136-199 30-100 (111)
33 2cq0_A Eukaryotic translation 99.3 5.3E-12 1.8E-16 92.6 9.6 85 87-200 10-95 (103)
34 2cqb_A Peptidyl-prolyl CIS-tra 99.3 3.8E-12 1.3E-16 93.1 8.7 65 136-200 27-92 (102)
35 2kt5_A RNA and export factor-b 99.3 7.4E-12 2.5E-16 95.1 10.3 84 88-200 31-114 (124)
36 2cph_A RNA binding motif prote 99.3 7.6E-12 2.6E-16 92.0 10.0 65 136-200 30-97 (107)
37 1x5s_A Cold-inducible RNA-bind 99.3 6.3E-12 2.1E-16 91.9 9.5 85 86-199 6-91 (102)
38 2dnh_A Bruno-like 5, RNA bindi 99.3 9E-12 3.1E-16 91.5 10.1 64 136-199 30-96 (105)
39 2dnm_A SRP46 splicing factor; 99.3 6.7E-12 2.3E-16 92.1 9.2 64 136-199 28-92 (103)
40 2err_A Ataxin-2-binding protei 99.3 6.7E-12 2.3E-16 93.9 9.1 62 136-198 44-105 (109)
41 2cqi_A Nucleolysin TIAR; RNA r 99.3 2.2E-11 7.5E-16 89.3 11.6 63 136-199 30-92 (103)
42 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 3E-11 1E-15 92.4 12.6 62 136-197 78-140 (140)
43 2cpz_A CUG triplet repeat RNA- 99.3 1.5E-11 5.2E-16 92.0 10.4 64 136-199 40-104 (115)
44 1oo0_B CG8781-PA, drosophila Y 99.3 1.5E-11 5.3E-16 91.2 10.3 63 136-198 41-104 (110)
45 3lqv_A PRE-mRNA branch site pr 99.3 1.2E-11 4E-16 92.5 9.7 81 88-199 4-84 (115)
46 1p27_B RNA-binding protein 8A; 99.3 1.2E-11 4E-16 91.0 9.4 63 136-198 38-101 (106)
47 2krb_A Eukaryotic translation 99.3 4.5E-12 1.5E-16 89.6 6.8 58 136-194 22-80 (81)
48 3ns6_A Eukaryotic translation 99.3 1E-11 3.5E-16 91.6 8.9 62 136-197 27-90 (100)
49 2jrs_A RNA-binding protein 39; 99.3 8.7E-12 3E-16 93.5 8.6 64 136-199 41-105 (108)
50 1why_A Hypothetical protein ri 99.3 1.9E-11 6.5E-16 88.9 10.1 80 86-199 11-92 (97)
51 2fy1_A RNA-binding motif prote 99.3 1.6E-11 5.4E-16 93.1 10.0 67 136-202 22-88 (116)
52 2dgv_A HnRNP M, heterogeneous 99.3 1.6E-11 5.3E-16 88.0 9.1 63 136-199 23-85 (92)
53 2cpf_A RNA binding motif prote 99.3 1.3E-11 4.6E-16 89.5 8.8 65 136-200 20-88 (98)
54 1sjq_A Polypyrimidine tract-bi 99.3 1.1E-11 3.6E-16 94.5 8.5 82 85-200 9-92 (105)
55 1x4a_A Splicing factor, argini 99.3 3.4E-11 1.2E-15 89.3 11.0 62 136-199 37-98 (109)
56 2wbr_A GW182, gawky, LD47780P; 99.3 1.4E-11 4.7E-16 91.8 8.8 61 136-201 22-82 (89)
57 1s79_A Lupus LA protein; RRM, 99.3 1.3E-11 4.3E-16 92.5 8.7 82 86-197 5-86 (103)
58 1whx_A Hypothetical protein ri 99.3 8.1E-12 2.8E-16 94.0 7.7 63 136-203 25-87 (111)
59 2g4b_A Splicing factor U2AF 65 99.3 2.6E-11 8.8E-16 94.7 10.8 62 136-197 109-171 (172)
60 4a8x_A RNA-binding protein wit 99.3 1.3E-11 4.4E-16 87.4 8.2 63 136-198 19-83 (88)
61 2lkz_A RNA-binding protein 5; 99.3 7.7E-12 2.6E-16 92.7 7.2 63 136-198 24-93 (95)
62 2khc_A Testis-specific RNP-typ 99.3 1.7E-11 5.8E-16 92.0 9.2 62 136-197 55-117 (118)
63 3md3_A Nuclear and cytoplasmic 99.3 3.4E-11 1.2E-15 92.9 11.2 63 136-198 102-165 (166)
64 2dgx_A KIAA0430 protein; RRM d 99.3 3.3E-11 1.1E-15 87.9 10.4 60 138-199 30-89 (96)
65 3ucg_A Polyadenylate-binding p 99.3 2.1E-11 7.1E-16 86.7 9.1 63 136-199 21-84 (89)
66 2a3j_A U1 small nuclear ribonu 99.3 2.6E-11 8.8E-16 94.5 10.2 82 91-199 28-109 (127)
67 3ex7_B RNA-binding protein 8A; 99.3 2E-11 6.7E-16 92.6 9.3 64 136-199 37-101 (126)
68 1p1t_A Cleavage stimulation fa 99.3 7.8E-12 2.7E-16 91.5 6.8 64 136-199 23-87 (104)
69 2dhg_A TRNA selenocysteine ass 99.3 1E-11 3.4E-16 91.1 7.4 64 136-199 24-89 (104)
70 1x4h_A RNA-binding protein 28; 99.3 4E-11 1.4E-15 88.7 10.6 64 136-199 30-100 (111)
71 1wi8_A EIF-4B, eukaryotic tran 99.3 3E-11 1E-15 88.8 9.8 86 84-200 7-94 (104)
72 2cpe_A RNA-binding protein EWS 99.3 2.7E-11 9.1E-16 90.3 9.2 64 136-199 30-102 (113)
73 2dng_A Eukaryotic translation 99.3 4E-11 1.4E-15 88.1 10.0 85 84-199 7-92 (103)
74 2div_A TRNA selenocysteine ass 99.2 2.8E-11 9.7E-16 87.9 9.0 65 136-200 24-94 (99)
75 2dgs_A DAZ-associated protein 99.2 5.2E-11 1.8E-15 86.7 10.3 63 136-199 25-88 (99)
76 2kxn_B Transformer-2 protein h 99.2 1.6E-11 5.6E-16 95.1 8.0 64 136-199 61-125 (129)
77 3r27_A HnRNP L, heterogeneous 99.2 3.2E-11 1.1E-15 91.1 9.4 76 91-200 20-97 (100)
78 2cqd_A RNA-binding region cont 99.2 6.1E-11 2.1E-15 88.8 10.8 63 136-199 32-95 (116)
79 2xnq_A Nuclear polyadenylated 99.2 5.8E-11 2E-15 87.2 10.2 78 86-198 16-93 (97)
80 2dgp_A Bruno-like 4, RNA bindi 99.2 4.3E-11 1.5E-15 88.0 9.3 65 136-200 28-96 (106)
81 2dgw_A Probable RNA-binding pr 99.2 8.3E-11 2.9E-15 84.3 10.6 82 87-199 5-86 (91)
82 2jvo_A Nucleolar protein 3; nu 99.2 4.1E-11 1.4E-15 89.9 9.4 57 136-199 46-102 (108)
83 1x5p_A Negative elongation fac 99.2 9.5E-11 3.2E-15 85.3 10.8 60 136-200 28-87 (97)
84 2kn4_A Immunoglobulin G-bindin 99.2 6.6E-11 2.3E-15 92.8 10.5 64 136-199 85-149 (158)
85 1u6f_A Tcubp1, RNA-binding pro 99.2 5.4E-11 1.8E-15 91.6 9.8 65 136-200 57-122 (139)
86 1x4g_A Nucleolysin TIAR; struc 99.2 6.2E-11 2.1E-15 88.0 9.7 59 136-199 40-98 (109)
87 2ytc_A PRE-mRNA-splicing facto 99.2 6.7E-11 2.3E-15 83.5 9.3 57 136-197 27-84 (85)
88 1x4f_A Matrin 3; structural ge 99.2 4.2E-11 1.4E-15 92.0 8.8 93 74-199 7-101 (112)
89 1b7f_A Protein (SXL-lethal pro 99.2 6.4E-11 2.2E-15 91.9 10.0 62 136-197 104-168 (168)
90 1fxl_A Paraneoplastic encephal 99.2 7.9E-11 2.7E-15 90.8 10.4 64 136-199 17-81 (167)
91 1h2v_Z 20 kDa nuclear CAP bind 99.2 9.5E-11 3.2E-15 92.2 11.0 64 136-199 54-118 (156)
92 2nlw_A Eukaryotic translation 99.2 3.4E-11 1.2E-15 89.4 7.9 66 136-202 36-103 (105)
93 2j76_E EIF-4B, EIF4B, eukaryot 99.2 2.5E-11 8.7E-16 89.1 7.1 62 136-199 34-97 (100)
94 1nu4_A U1A RNA binding domain; 99.2 2.7E-11 9.3E-16 87.5 7.1 83 90-199 6-88 (97)
95 2cpj_A Non-POU domain-containi 99.2 5.3E-11 1.8E-15 86.8 8.7 59 136-199 30-88 (99)
96 2ek1_A RNA-binding protein 12; 99.2 3.5E-11 1.2E-15 86.7 7.6 63 136-198 30-93 (95)
97 1wex_A Hypothetical protein (r 99.2 6.5E-11 2.2E-15 89.1 9.2 62 136-202 30-93 (104)
98 2dnq_A RNA-binding protein 4B; 99.2 6.4E-11 2.2E-15 85.0 8.7 57 136-199 23-79 (90)
99 2cq1_A PTB-like protein L; RRM 99.2 1.1E-10 3.8E-15 87.5 10.3 61 136-201 30-92 (101)
100 2dnn_A RNA-binding protein 12; 99.2 2.5E-11 8.7E-16 92.1 6.9 92 82-204 6-97 (109)
101 2cq4_A RNA binding motif prote 99.2 6.4E-11 2.2E-15 88.4 9.0 62 136-198 40-102 (114)
102 2f3j_A RNA and export factor b 99.2 6.2E-11 2.1E-15 96.6 9.6 66 136-201 103-168 (177)
103 2dnp_A RNA-binding protein 14; 99.2 9.5E-11 3.2E-15 84.0 9.4 76 88-199 5-80 (90)
104 2yh0_A Splicing factor U2AF 65 99.2 9.2E-11 3.2E-15 93.5 10.3 64 136-199 129-193 (198)
105 1x4d_A Matrin 3; structural ge 99.2 4.4E-11 1.5E-15 90.2 7.6 79 87-198 10-90 (102)
106 2qfj_A FBP-interacting repress 99.2 7.5E-11 2.6E-15 95.2 9.4 64 136-199 140-204 (216)
107 1rk8_A CG8781-PA, CG8781-PA pr 99.2 1.3E-10 4.6E-15 92.6 10.6 63 136-198 87-150 (165)
108 2dgu_A Heterogeneous nuclear r 99.2 1.7E-10 5.8E-15 84.8 10.3 57 136-199 26-82 (103)
109 2fc9_A NCL protein; structure 99.2 1.1E-10 3.9E-15 85.1 9.3 80 88-199 11-90 (101)
110 3s7r_A Heterogeneous nuclear r 99.2 2.3E-10 7.7E-15 81.2 10.5 61 136-197 26-87 (87)
111 1x4e_A RNA binding motif, sing 99.2 1.2E-11 3.9E-16 87.7 3.7 61 136-196 20-81 (85)
112 3pgw_S U1-70K; protein-RNA com 99.2 3.4E-10 1.2E-14 104.3 14.4 64 136-199 117-181 (437)
113 2cq2_A Hypothetical protein LO 99.2 1.2E-10 4.2E-15 89.8 9.6 63 136-203 42-109 (114)
114 2i2y_A Fusion protein consists 99.2 1.4E-10 4.7E-15 90.7 9.8 60 136-199 88-147 (150)
115 1x5o_A RNA binding motif, sing 99.2 1.7E-10 5.8E-15 86.0 9.9 63 136-198 40-110 (114)
116 2dgt_A RNA-binding protein 30; 99.2 2.5E-10 8.5E-15 82.1 10.5 76 88-199 6-81 (92)
117 2ad9_A Polypyrimidine tract-bi 99.2 1.2E-10 4E-15 90.4 9.2 62 136-202 46-109 (119)
118 1b7f_A Protein (SXL-lethal pro 99.2 1.1E-10 3.7E-15 90.6 9.0 64 136-199 18-82 (168)
119 3md3_A Nuclear and cytoplasmic 99.2 1.4E-10 4.9E-15 89.3 9.6 63 136-198 15-77 (166)
120 1wel_A RNA-binding protein 12; 99.2 2E-11 7E-16 92.9 4.6 66 136-202 40-106 (124)
121 2cqp_A RNA-binding protein 12; 99.2 1E-10 3.5E-15 84.8 8.0 63 136-198 30-93 (98)
122 2la4_A Nuclear and cytoplasmic 99.1 1.1E-10 3.8E-15 85.2 8.1 58 136-198 42-99 (101)
123 2e44_A Insulin-like growth fac 99.1 2.4E-10 8.1E-15 82.6 9.7 62 136-200 30-92 (96)
124 1wf1_A RNA-binding protein RAL 99.1 2.2E-10 7.5E-15 85.2 9.6 56 136-198 43-98 (110)
125 2jvr_A Nucleolar protein 3; RN 99.1 1.8E-10 6.2E-15 87.8 9.4 60 136-198 43-103 (111)
126 3nmr_A Cugbp ELAV-like family 99.1 1.6E-10 5.6E-15 89.9 9.3 63 136-198 110-175 (175)
127 1fxl_A Paraneoplastic encephal 99.1 1.7E-10 5.9E-15 88.9 9.3 62 136-197 103-167 (167)
128 2cpy_A RNA-binding protein 12; 99.1 1.3E-10 4.5E-15 87.3 8.4 84 87-200 10-94 (114)
129 1wg5_A Heterogeneous nuclear r 99.1 1.9E-10 6.4E-15 85.2 9.1 68 136-204 30-98 (104)
130 2db1_A Heterogeneous nuclear r 99.1 1.1E-10 3.6E-15 88.8 7.9 65 136-201 32-99 (118)
131 3n9u_C Cleavage and polyadenyl 99.1 2.4E-10 8E-15 91.5 10.1 64 136-199 70-136 (156)
132 1x4c_A Splicing factor, argini 99.1 3.2E-10 1.1E-14 84.3 10.2 58 136-199 30-92 (108)
133 2cpd_A Apobec-1 stimulating pr 99.1 4.5E-10 1.5E-14 81.8 10.7 57 136-199 30-88 (99)
134 2cpx_A Hypothetical protein FL 99.1 1.3E-10 4.4E-15 86.6 7.7 82 86-199 19-104 (115)
135 2lea_A Serine/arginine-rich sp 99.1 6.7E-11 2.3E-15 92.1 6.0 64 136-199 62-126 (135)
136 3p5t_L Cleavage and polyadenyl 99.1 5E-11 1.7E-15 85.8 4.9 63 136-198 16-81 (90)
137 2mss_A Protein (musashi1); RNA 99.1 6.9E-11 2.4E-15 81.7 5.4 61 136-197 14-75 (75)
138 2dh8_A DAZ-associated protein 99.1 2.4E-10 8.2E-15 84.0 8.6 63 136-199 31-94 (105)
139 2ghp_A U4/U6 snRNA-associated 99.1 2.4E-10 8.1E-15 97.3 9.7 62 136-198 226-289 (292)
140 2bz2_A Negative elongation fac 99.1 2E-10 6.8E-15 88.1 8.3 61 136-201 52-112 (121)
141 2dis_A Unnamed protein product 99.1 2.6E-10 8.8E-15 84.2 8.6 64 136-199 23-91 (109)
142 2kvi_A Nuclear polyadenylated 99.1 1.2E-10 4.2E-15 84.7 6.6 56 136-198 26-81 (96)
143 1wg1_A KIAA1579 protein, homol 99.1 2.3E-10 7.7E-15 82.0 7.9 61 136-202 20-80 (88)
144 3smz_A Protein raver-1, ribonu 99.1 3.3E-10 1.1E-14 96.0 10.3 65 136-200 200-264 (284)
145 1wez_A HnRNP H', FTP-3, hetero 99.1 1.4E-10 4.6E-15 86.3 6.8 84 86-200 9-92 (102)
146 1fjc_A Nucleolin RBD2, protein 99.1 1.5E-10 5.2E-15 83.6 6.7 60 136-199 31-90 (96)
147 2hgl_A HNRPF protein, heteroge 99.1 1.6E-10 5.4E-15 91.1 7.3 64 136-200 59-125 (136)
148 1uaw_A Mouse-musashi-1; RNP-ty 99.1 1.5E-10 5.3E-15 80.0 6.4 61 136-197 15-76 (77)
149 2lmi_A GRSF-1, G-rich sequence 99.1 1.2E-10 4.2E-15 86.6 6.2 85 86-200 5-92 (107)
150 3tyt_A Heterogeneous nuclear r 99.1 3.6E-10 1.2E-14 93.7 9.7 59 136-198 20-78 (205)
151 2rs2_A Musashi-1, RNA-binding 99.1 4.2E-10 1.4E-14 84.2 9.1 63 136-199 40-103 (109)
152 2cqh_A IGF-II mRNA-binding pro 99.1 2.2E-10 7.4E-15 82.5 6.9 58 136-199 23-82 (93)
153 2jwn_A Embryonic polyadenylate 99.1 3.6E-10 1.2E-14 85.4 8.2 63 136-199 51-114 (124)
154 2m2b_A RNA-binding protein 10; 99.1 1.2E-10 4.1E-15 89.6 5.5 63 136-199 38-107 (131)
155 1x4b_A Heterogeneous nuclear r 99.1 3.8E-10 1.3E-14 84.4 7.9 63 136-199 42-105 (116)
156 2ki2_A SS-DNA binding protein 99.1 9.3E-11 3.2E-15 83.8 4.2 65 136-201 16-81 (90)
157 3zzy_A Polypyrimidine tract-bi 99.1 7.6E-10 2.6E-14 87.2 9.9 62 136-201 43-107 (130)
158 1fje_B Nucleolin RBD12, protei 99.1 4.9E-10 1.7E-14 87.9 8.8 59 136-198 114-172 (175)
159 1fj7_A Nucleolin RBD1, protein 99.1 3.7E-11 1.3E-15 87.8 1.9 63 136-199 32-94 (101)
160 2cqg_A TDP-43, TAR DNA-binding 99.0 2E-09 7E-14 78.7 11.1 62 136-199 30-92 (103)
161 2cjk_A Nuclear polyadenylated 99.0 3.6E-10 1.2E-14 87.7 7.4 62 136-198 102-164 (167)
162 4f02_A Polyadenylate-binding p 99.0 5.9E-10 2E-14 91.7 9.1 62 136-198 118-179 (213)
163 2hvz_A Splicing factor, argini 99.0 2.2E-10 7.4E-15 83.7 5.6 60 136-199 15-74 (101)
164 2diu_A KIAA0430 protein; struc 99.0 7.6E-10 2.6E-14 83.4 8.7 57 135-200 27-84 (96)
165 3egn_A RNA-binding protein 40; 99.0 3.2E-10 1.1E-14 87.9 6.9 62 136-199 60-129 (143)
166 3pgw_A U1-A; protein-RNA compl 99.0 1.2E-09 4.1E-14 92.4 10.7 59 136-198 222-281 (282)
167 1qm9_A Polypyrimidine tract-bi 99.0 7.3E-10 2.5E-14 89.0 8.6 59 136-198 135-195 (198)
168 1sjr_A Polypyrimidine tract-bi 99.0 1.4E-09 4.7E-14 89.0 9.9 62 136-200 61-124 (164)
169 4f02_A Polyadenylate-binding p 99.0 1.7E-09 5.9E-14 88.9 10.3 64 136-199 30-94 (213)
170 2qfj_A FBP-interacting repress 99.0 9.5E-10 3.3E-14 88.7 8.4 64 136-199 43-107 (216)
171 1l3k_A Heterogeneous nuclear r 99.0 1.6E-09 5.6E-14 86.0 9.6 63 136-199 119-182 (196)
172 2e5i_A Heterogeneous nuclear r 99.0 2.4E-09 8.3E-14 83.4 9.9 60 136-200 40-102 (124)
173 1iqt_A AUF1, heterogeneous nuc 99.0 5.7E-10 2E-14 76.9 5.6 61 136-197 14-75 (75)
174 2lcw_A RNA-binding protein FUS 98.5 5.2E-11 1.8E-15 89.4 0.0 64 136-199 22-94 (116)
175 2xs2_A Deleted in azoospermia- 99.0 1E-09 3.4E-14 80.2 7.0 60 136-197 24-83 (102)
176 2adc_A Polypyrimidine tract-bi 99.0 1.5E-09 5E-14 90.3 8.8 60 136-199 50-109 (229)
177 3q2s_C Cleavage and polyadenyl 99.0 1.1E-09 3.7E-14 92.6 8.0 63 136-198 83-148 (229)
178 2hzc_A Splicing factor U2AF 65 99.0 2.3E-09 7.9E-14 75.6 8.4 54 136-195 21-85 (87)
179 2hgn_A Heterogeneous nuclear r 99.0 3.3E-10 1.1E-14 89.6 4.3 64 136-201 61-124 (139)
180 2dha_A FLJ20171 protein; RRM d 99.0 4.7E-10 1.6E-14 86.9 5.0 66 136-202 38-107 (123)
181 3pgw_A U1-A; protein-RNA compl 99.0 4.3E-09 1.5E-13 89.0 11.2 82 91-199 8-89 (282)
182 1qm9_A Polypyrimidine tract-bi 99.0 1.1E-09 3.9E-14 87.8 7.3 60 136-199 19-78 (198)
183 2e5g_A U6 snRNA-specific termi 98.9 2.8E-09 9.7E-14 76.9 8.4 60 136-200 23-82 (94)
184 1l3k_A Heterogeneous nuclear r 98.9 4E-09 1.4E-13 83.7 9.9 82 88-199 9-91 (196)
185 2voo_A Lupus LA protein; RNA-b 98.9 4.9E-09 1.7E-13 86.3 10.6 61 136-197 124-184 (193)
186 2fc8_A NCL protein; structure 98.9 5E-09 1.7E-13 76.3 9.2 81 87-199 10-91 (102)
187 3beg_B Splicing factor, argini 98.9 9.6E-10 3.3E-14 82.9 5.5 55 136-196 31-85 (115)
188 2adc_A Polypyrimidine tract-bi 98.9 4.1E-09 1.4E-13 87.5 9.5 59 136-198 166-226 (229)
189 3smz_A Protein raver-1, ribonu 98.9 7.3E-09 2.5E-13 87.7 10.7 65 136-200 110-175 (284)
190 2ghp_A U4/U6 snRNA-associated 98.9 4.1E-09 1.4E-13 89.6 8.7 64 136-199 132-196 (292)
191 2hgm_A HNRPF protein, heteroge 98.9 1.7E-09 5.9E-14 84.3 5.7 85 87-202 37-123 (126)
192 3sde_A Paraspeckle component 1 98.9 6.1E-09 2.1E-13 88.2 9.3 58 136-198 37-94 (261)
193 3nmr_A Cugbp ELAV-like family 98.9 5.6E-09 1.9E-13 81.1 8.2 63 136-198 18-86 (175)
194 2d9o_A DNAJ (HSP40) homolog, s 98.8 5.7E-09 2E-13 78.2 6.8 58 136-199 32-89 (100)
195 3d2w_A TAR DNA-binding protein 98.8 1.3E-08 4.3E-13 73.7 8.4 76 86-198 5-82 (89)
196 1fje_B Nucleolin RBD12, protei 98.8 1.3E-09 4.4E-14 85.5 3.2 83 87-199 8-90 (175)
197 2cjk_A Nuclear polyadenylated 98.8 1.7E-08 5.7E-13 78.2 8.4 61 136-198 18-79 (167)
198 3sde_A Paraspeckle component 1 98.8 1.5E-08 5.3E-13 85.7 8.8 65 136-200 111-179 (261)
199 2dnr_A Synaptojanin-1; RRM dom 98.8 3.4E-08 1.2E-12 73.7 8.8 62 133-203 27-88 (91)
200 2dnl_A Cytoplasmic polyadenyla 98.8 2.4E-08 8.3E-13 74.8 7.9 58 136-196 23-84 (114)
201 2yh0_A Splicing factor U2AF 65 98.7 5.3E-08 1.8E-12 77.3 8.7 57 136-198 19-86 (198)
202 2j8a_A Histone-lysine N-methyl 98.7 4.7E-08 1.6E-12 77.8 8.1 64 136-199 21-95 (136)
203 3tht_A Alkylated DNA repair pr 98.7 6.6E-08 2.2E-12 87.2 9.4 57 136-197 35-96 (345)
204 3tyt_A Heterogeneous nuclear r 98.7 7.8E-08 2.7E-12 79.6 8.8 60 136-196 138-203 (205)
205 2g4b_A Splicing factor U2AF 65 98.7 8E-08 2.7E-12 74.6 8.4 57 136-198 19-86 (172)
206 1ufw_A Synaptojanin 2; RNP dom 98.6 5.7E-08 2E-12 73.0 7.0 56 133-196 36-91 (95)
207 1wf0_A TDP-43, TAR DNA-binding 98.5 2.2E-07 7.7E-12 65.9 7.3 56 136-199 20-77 (88)
208 1owx_A Lupus LA protein, SS-B, 97.6 0.0001 3.4E-09 57.3 6.2 57 136-197 34-93 (121)
209 1wey_A Calcipressin 1; structu 97.2 0.0024 8.4E-08 48.4 9.1 61 136-201 25-85 (104)
210 1wwh_A Nucleoporin 35, nucleop 97.0 0.0018 6.3E-08 50.2 6.9 53 136-194 38-91 (119)
211 2l9w_A U4/U6 snRNA-associated- 96.7 0.0045 1.6E-07 47.7 7.1 54 137-195 37-95 (117)
212 1m9o_A Tristetraproline; Cys3H 95.9 0.0053 1.8E-07 42.8 3.1 29 62-90 10-38 (77)
213 3p3d_A Nucleoporin 53; structu 95.6 0.011 3.9E-07 46.5 4.4 61 136-197 21-96 (132)
214 2i2y_A Fusion protein consists 95.1 0.0086 2.9E-07 45.9 2.2 40 159-199 10-50 (150)
215 1m9o_A Tristetraproline; Cys3H 94.2 0.0084 2.9E-07 41.8 0.0 26 64-89 50-75 (77)
216 2cqe_A KIAA1064 protein; CCCH 94.1 0.017 5.9E-07 42.8 1.5 24 63-87 12-35 (98)
217 2kn4_A Immunoglobulin G-bindin 93.5 0.062 2.1E-06 41.1 3.9 35 150-185 2-36 (158)
218 2cqe_A KIAA1064 protein; CCCH 92.5 0.066 2.3E-06 39.6 2.6 26 64-89 36-61 (98)
219 2rhk_C Cleavage and polyadenyl 92.1 0.063 2.2E-06 37.6 1.9 27 62-89 14-40 (72)
220 2d9n_A Cleavage and polyadenyl 91.9 0.053 1.8E-06 38.2 1.4 22 65-87 11-32 (77)
221 2d9m_A Zinc finger CCCH-type d 91.3 0.041 1.4E-06 38.8 0.2 22 65-87 21-42 (69)
222 2d9n_A Cleavage and polyadenyl 90.0 0.1 3.5E-06 36.7 1.3 28 64-92 38-65 (77)
223 2rhk_C Cleavage and polyadenyl 89.5 0.089 3E-06 36.8 0.6 27 64-91 44-70 (72)
224 1uw4_A UPF3X; nonsense mediate 88.8 1.7 5.8E-05 31.7 7.2 58 142-199 22-87 (91)
225 1whv_A Poly(A)-specific ribonu 86.9 2.5 8.5E-05 31.6 7.2 63 84-183 8-70 (100)
226 3d2q_A Muscleblind-like protei 74.7 1.1 3.9E-05 30.7 1.4 24 65-89 7-31 (70)
227 2fc6_A Nuclear, target of EGR1 69.2 3.3 0.00011 27.2 2.6 28 62-89 18-45 (50)
228 3h7h_B Transcription elongatio 64.4 6 0.00021 29.4 3.6 36 147-186 40-75 (106)
229 3d2n_A Muscleblind-like protei 63.9 3.6 0.00012 29.4 2.1 25 65-90 10-35 (83)
230 2e5s_A Otthump00000018578; ZF- 63.7 1.4 4.9E-05 32.4 -0.0 25 65-90 21-46 (98)
231 2exu_A Transcription initiatio 62.7 6.8 0.00023 32.5 3.9 46 148-201 139-184 (200)
232 3ctr_A Poly(A)-specific ribonu 62.0 5.7 0.00019 29.7 3.0 41 136-183 20-60 (101)
233 3u9g_A Zinc finger CCCH-type a 61.6 3.4 0.00011 35.1 1.9 38 65-103 152-200 (229)
234 3pq1_A Poly(A) RNA polymerase; 55.1 7.3 0.00025 36.1 3.1 42 136-181 67-108 (464)
235 3d2q_A Muscleblind-like protei 53.1 2.7 9.4E-05 28.7 -0.1 25 63-89 41-65 (70)
236 2eqg_A Tumor necrosis factor, 51.2 10 0.00035 24.4 2.4 27 58-84 10-36 (49)
237 3lpe_A Putative transcription 49.5 20 0.00068 25.6 4.1 33 148-184 40-72 (92)
238 2rpp_A Muscleblind-like protei 41.8 7.6 0.00026 28.1 0.8 25 65-90 18-43 (89)
239 3d45_A Poly(A)-specific ribonu 41.6 49 0.0017 30.6 6.5 42 136-184 454-495 (507)
240 2e5s_A Otthump00000018578; ZF- 41.4 4.6 0.00016 29.6 -0.4 26 62-89 54-79 (98)
241 3p8b_B Transcription antitermi 37.6 32 0.0011 26.3 3.9 33 148-184 33-65 (152)
242 3nr7_A DNA-binding protein H-N 33.2 62 0.0021 23.1 4.5 23 19-41 48-70 (86)
243 4dgw_B PRE-mRNA-splicing facto 29.1 57 0.0019 25.8 4.0 13 4-16 82-94 (152)
244 3lvg_D LCB, clathrin light cha 28.5 1.3E+02 0.0045 24.5 6.1 40 5-44 88-132 (190)
245 2e7g_A Putative ribosome-bindi 27.6 69 0.0024 24.1 4.2 36 145-183 43-79 (129)
246 2l08_A Regulator of nonsense t 26.0 61 0.0021 23.7 3.5 40 160-199 51-95 (97)
247 1xi4_J LCA, clathrin light cha 24.2 1.8E+02 0.006 20.0 5.6 39 5-45 12-50 (70)
248 2g0c_A ATP-dependent RNA helic 23.8 92 0.0032 20.5 3.9 43 147-197 32-74 (76)
249 2dhx_A Poly (ADP-ribose) polym 23.6 86 0.003 23.3 3.9 42 145-194 37-78 (104)
250 3lvh_D LCB, clathrin light cha 21.5 2E+02 0.0069 23.8 6.1 10 5-14 103-112 (205)
251 1b35_D CRPV, protein (cricket 21.0 30 0.001 22.7 0.8 18 90-107 27-44 (57)
252 1k4n_A Protein EC4020, protein 20.4 3.5E+02 0.012 22.0 7.5 62 124-194 14-83 (192)
No 1
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.95 E-value=6.5e-28 Score=182.46 Aligned_cols=103 Identities=28% Similarity=0.572 Sum_probs=89.3
Q ss_pred CceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHH-HhcCCeeEEEEccCCCCCcceeEEEEeC
Q psy16559 92 SKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPEL-RSLGQVTQFKVCCNKSPHLRGNVYVSYS 170 (207)
Q Consensus 92 S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec-~kyG~V~~v~V~~n~~~h~~G~VyVkF~ 170 (207)
|+||||+|||++|+.... ..++....+++++|+++|++|++||+++| ++||+|.+|.|+.+..++++|++||+|.
T Consensus 1 s~~~~l~nm~~~p~~~~~----~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~ 76 (104)
T 1jmt_A 1 SQTIALLNIYRNPQNSSQ----SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFR 76 (104)
T ss_dssp CCEEEEEEEEECCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEES
T ss_pred CcEEEEeeccCCcccccc----ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEEC
Confidence 799999999998876431 11122345678899999999999999999 9999999999998877789999999999
Q ss_pred ChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 171 NEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 171 ~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+.++|.+|+..||||+|+||+|.|+|+|
T Consensus 77 ~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 77 REEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp CHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred CHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 9999999999999999999999999997
No 2
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.92 E-value=7.6e-25 Score=165.99 Aligned_cols=96 Identities=19% Similarity=0.330 Sum_probs=84.2
Q ss_pred CCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCC---CcceeEE
Q psy16559 90 SVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSP---HLRGNVY 166 (207)
Q Consensus 90 ~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~---h~~G~Vy 166 (207)
+.|++|+|+|||++.++. + ...|+++.+||+++|++||+|.+|.|+.+... +++|++|
T Consensus 3 ~ps~vl~L~Nm~~~~~l~---------------~----d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~f 63 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELL---------------D----DEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIF 63 (105)
T ss_dssp SCCSEEEEESSCCGGGSS---------------S----HHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEE
T ss_pred CCCeEEEEECCCCHHHcc---------------C----hHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEE
Confidence 358999999999965432 1 13478999999999999999999999987543 5789999
Q ss_pred EEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCcccc
Q psy16559 167 VSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSK 204 (207)
Q Consensus 167 VkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f~e 204 (207)
|+|.+.++|.+|++.||||+|+||+|.|+|+++++|..
T Consensus 64 V~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~f~~ 101 (105)
T 3v4m_A 64 VEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHR 101 (105)
T ss_dssp EEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHT
T ss_pred EEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHHHHhh
Confidence 99999999999999999999999999999999998864
No 3
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.92 E-value=4.5e-25 Score=170.42 Aligned_cols=96 Identities=29% Similarity=0.503 Sum_probs=84.0
Q ss_pred CCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEE
Q psy16559 87 IKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVY 166 (207)
Q Consensus 87 ~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~Vy 166 (207)
..|..|+||+|+|||+..++. |+ +.|+++.+||+++|++||.|.+|.|+++. ++|++|
T Consensus 2 ~~p~ps~vv~L~Nm~~~~e~~-------d~------------~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~f 59 (114)
T 3s6e_A 2 VQPLATQCFQLSNMFNPQTEE-------EV------------GWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVY 59 (114)
T ss_dssp CCCCCCSEEEEESSCCTTTCC-------ST------------THHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEE
T ss_pred CCCCCCcEEEEECCCChHHcc-------Ch------------hHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEE
Confidence 357889999999999965431 11 34678899999999999999999998763 589999
Q ss_pred EEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCcccc
Q psy16559 167 VSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSK 204 (207)
Q Consensus 167 VkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f~e 204 (207)
|+|.+.++|.+|++.||||||+||+|.|+|+++++|..
T Consensus 60 V~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~ 97 (114)
T 3s6e_A 60 VKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHN 97 (114)
T ss_dssp EECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHH
T ss_pred EEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHHH
Confidence 99999999999999999999999999999999998853
No 4
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.90 E-value=1.7e-24 Score=168.02 Aligned_cols=92 Identities=20% Similarity=0.383 Sum_probs=79.5
Q ss_pred CCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCC-----CCcce
Q psy16559 89 PSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKS-----PHLRG 163 (207)
Q Consensus 89 P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~-----~h~~G 163 (207)
+..|+||+|+|||++.++. +++.+||++||++||+|.+|+|+.+.. .+++|
T Consensus 17 ~~ps~vl~L~Nm~~~~el~------------------------ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G 72 (118)
T 3ue2_A 17 KQESTVMVLRNMVDPKDID------------------------DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIV 72 (118)
T ss_dssp HHSCCEEEEESCSCGGGCC------------------------TTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEE
T ss_pred CCCCCEEEEECCCCHHHHH------------------------HHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceE
Confidence 3479999999999954331 134589999999999999999987632 36789
Q ss_pred eEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCcccc
Q psy16559 164 NVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSK 204 (207)
Q Consensus 164 ~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f~e 204 (207)
++||+|.+.++|.+|+..||||||+||+|.|.|+++++|..
T Consensus 73 ~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~f~~ 113 (118)
T 3ue2_A 73 KIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDN 113 (118)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHT
T ss_pred EEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcChHhccc
Confidence 99999999999999999999999999999999999999864
No 5
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.89 E-value=2e-23 Score=158.31 Aligned_cols=95 Identities=18% Similarity=0.339 Sum_probs=80.8
Q ss_pred CCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCC--CCCccee
Q psy16559 87 IKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNK--SPHLRGN 164 (207)
Q Consensus 87 ~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~--~~h~~G~ 164 (207)
+.|+.|+||+|+|||++.++. +++.+||+++|++||.|.+|.|+.+. +++++|+
T Consensus 3 i~~~~s~~l~l~Nm~~~~~l~------------------------dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~ 58 (105)
T 2pe8_A 3 MGKCPTKVVLLRNMVGAGEVD------------------------EDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVR 58 (105)
T ss_dssp GGGSCCSEEEEESSSCSCCC---------------------------CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEE
T ss_pred CCCCCCCEEEEEcCCChHHhh------------------------HHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEE
Confidence 356789999999999754321 12348999999999999999998753 3678999
Q ss_pred EEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCccccc
Q psy16559 165 VYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSKA 205 (207)
Q Consensus 165 VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f~eA 205 (207)
+||+|.+.++|.+|+..||||+|+||+|.|.|++.++|...
T Consensus 59 ~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~~f~~~ 99 (105)
T 2pe8_A 59 IFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVL 99 (105)
T ss_dssp EEEEESSHHHHHHHHHHHTTCEETTEECEEEECCHHHHHTT
T ss_pred EEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCHHHhhhh
Confidence 99999999999999999999999999999999999888653
No 6
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.6e-21 Score=145.53 Aligned_cols=104 Identities=22% Similarity=0.380 Sum_probs=89.8
Q ss_pred CcccCCCCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCC
Q psy16559 80 DHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSP 159 (207)
Q Consensus 80 drCSr~H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~ 159 (207)
..||+.|.+|+.|+||+|+|||+++.+.. + ...|+++.+||++.|++||.|.+|.|.++
T Consensus 3 ~g~~~~~~~~~~s~~l~l~Nl~~~~~~~~--------------~----~~~~~~~e~~l~~~f~~~G~v~~v~i~~~--- 61 (112)
T 2dit_A 3 SGSSGGPSRMRHERVVIIKNMFHPMDFED--------------D----PLVLNEIREDLRVECSKFGQIRKLLLFDR--- 61 (112)
T ss_dssp SSCCSCCCCCCSCCEEEEESSCCTTHHHH--------------C----SHHHHHHHHHHHHHGGGTSCCSEEEEETT---
T ss_pred CcccCCCCCCCCceEEEEEcCCCHHHhcc--------------C----HHHHHHHHHHHHHHHHccCCEeEEEEecC---
Confidence 46899999999999999999999765421 1 13577888999999999999999988654
Q ss_pred CcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec-CcCcccc
Q psy16559 160 HLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC-NVPLWSK 204 (207)
Q Consensus 160 h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~-~v~~f~e 204 (207)
+++|++||+|.+.++|.+|+..|||++|+||+|.+.|+ |.++|..
T Consensus 62 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~ 107 (112)
T 2dit_A 62 HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQS 107 (112)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSC
T ss_pred CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCccc
Confidence 47999999999999999999999999999999999995 5577754
No 7
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.81 E-value=3.8e-20 Score=153.99 Aligned_cols=93 Identities=19% Similarity=0.370 Sum_probs=80.0
Q ss_pred CCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCC-----Ccc
Q psy16559 88 KPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSP-----HLR 162 (207)
Q Consensus 88 ~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~-----h~~ 162 (207)
.+..++++.|.||++...+. +++-+|+++||++||.|.+|.|+++..+ +++
T Consensus 120 ~~~~s~v~~l~n~v~~~e~~------------------------~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~ 175 (222)
T 3dxb_A 120 SAMESTVMVLRNMVDPKDID------------------------DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEII 175 (222)
T ss_dssp SCCBCSEEEEESSCCGGGCC------------------------TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEE
T ss_pred cccccccchhhcCCCHHHHH------------------------HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCce
Confidence 45568899999999865431 1233799999999999999999876433 889
Q ss_pred eeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCcccc
Q psy16559 163 GNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSK 204 (207)
Q Consensus 163 G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f~e 204 (207)
|+|||+|.+.++|.+|++.||||||+||+|.|+|+|+++|+.
T Consensus 176 G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f~~ 217 (222)
T 3dxb_A 176 VKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDN 217 (222)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHHHT
T ss_pred eEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHhhh
Confidence 999999999999999999999999999999999999999964
No 8
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.68 E-value=3.1e-17 Score=141.52 Aligned_cols=128 Identities=15% Similarity=0.240 Sum_probs=87.6
Q ss_pred cccccccccccccccCcccCCCCCCCCCceEEeC---CCcCccccCcc--cccc------cCc-cccc---ccChHHHH-
Q psy16559 65 ELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLN---NFFTHLSMDNK--SVRE------YDT-DINL---EFDETEMH- 128 (207)
Q Consensus 65 ~~C~Fy~K~GaCR~GdrCSr~H~~P~~S~tllL~---NMf~~p~~~~~--~~~~------~d~-d~~l---e~~~eel~- 128 (207)
-.|+||.| |+|++|+.|+..|..|+.+....+. ++.+..+-+.- ..++ .+. ...| -|+.. +.
T Consensus 71 ~~C~ffak-G~C~~G~~C~y~H~lPt~~d~~~~~~~~~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~-~~~ 148 (240)
T 3u1l_A 71 FFCLFFAK-GMCCLGPKCEYLHHIPDEEDIGKLALRTEVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGA-LNS 148 (240)
T ss_dssp SBCHHHHT-TCCSCGGGCSSBBSCCCHHHHHHHHHHCSSBCTTSSBCGGGTC---------CCCCCEEEEECTTGG-GTT
T ss_pred eEcCcccc-CCCCCCCCCCccCCCCCccchhhhcccccCcccccchhcccchhcccCcCccccCCceeecCCCChh-hhc
Confidence 38999999 9999999999999999976654322 44443321110 0000 000 0000 01110 00
Q ss_pred --HHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCcee------------CCeEEEE
Q psy16559 129 --KYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFY------------GGKQIRG 194 (207)
Q Consensus 129 --~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f------------~GR~I~a 194 (207)
-.....-++|+..|++||.|.+|.|.. .+|++||+|.+.++|+.|+.+|||+.+ +|++|.+
T Consensus 149 ~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V 223 (240)
T 3u1l_A 149 KHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLV 223 (240)
T ss_dssp CCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEE
T ss_pred ccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEE
Confidence 000112378999999999999999985 379999999999999999999999999 9999999
Q ss_pred EecCc
Q psy16559 195 QFCNV 199 (207)
Q Consensus 195 e~~~v 199 (207)
.|+..
T Consensus 224 ~wA~~ 228 (240)
T 3u1l_A 224 KWANE 228 (240)
T ss_dssp EECC-
T ss_pred EEccC
Confidence 99754
No 9
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.45 E-value=5e-13 Score=101.16 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+|+++.|++||.|.+|.|..+. +.+.+|++||.|.+.++|.+|++.|||..++||+|.+++++-
T Consensus 21 ~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 21 TFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp HHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred HHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 5677788999999999997654 467899999999999999999999999999999999999864
No 10
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.43 E-value=6.6e-13 Score=93.81 Aligned_cols=81 Identities=15% Similarity=0.293 Sum_probs=67.8
Q ss_pred CCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccC-CCCCcceeEE
Q psy16559 88 KPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCN-KSPHLRGNVY 166 (207)
Q Consensus 88 ~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~Vy 166 (207)
.+..+++|.|.|+=. .+ ++ +||...|++||.|.++.|..+ .+...+|++|
T Consensus 3 ~~~~~~~l~V~nl~~--~~----------------~~-----------~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~af 53 (85)
T 3mdf_A 3 MATTKRVLYVGGLAE--EV----------------DD-----------KVLHAAFIPFGDITDIQIPLDYETEKHRGFAF 53 (85)
T ss_dssp CCCCSSEEEEECCCT--TC----------------CH-----------HHHHHHHGGGSCEEEEECCEETTTTEECSEEE
T ss_pred CCCCCCEEEEECCCC--CC----------------CH-----------HHHHHHHhccCCEEEEEEEECCCCCccccEEE
Confidence 356788999999822 21 22 567778899999999999765 4556799999
Q ss_pred EEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 167 VSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 167 VkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
|+|.+.++|.+|++.|||..++|++|.++++
T Consensus 54 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 54 VEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp EEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 9999999999999999999999999999986
No 11
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.3e-12 Score=94.13 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=69.8
Q ss_pred CCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCC-CCCccee
Q psy16559 86 HIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNK-SPHLRGN 164 (207)
Q Consensus 86 H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~ 164 (207)
...|..+.+|.|.|+=. .+ ++ +||++-|++||.|..+.|..+. +...+|+
T Consensus 9 ~~~~~~~~~l~v~nlp~--~~----------------t~-----------~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~ 59 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSL--YT----------------TE-----------RDLREVFSKYGPIADVSIVYDQQSRRSRGF 59 (95)
T ss_dssp CCSCCGGGCEEEESCCS--SC----------------CH-----------HHHHHHHHTTSCEEEEEEEECSSSSSEEEE
T ss_pred CCCCCCCCEEEEECCCC--CC----------------CH-----------HHHHHHHHhcCCeeEEEEEEcCCCCCcccE
Confidence 44566789999998832 21 22 5677788999999999997653 3578999
Q ss_pred EEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 165 VYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 165 VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||+|.+.++|.+|+..|||..++|++|.++++.
T Consensus 60 afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 60 AFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp EEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred EEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 9999999999999999999999999999999874
No 12
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.40 E-value=1.6e-12 Score=93.81 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||++-|++||.|.+|.|..+.....+|++||+|.+.++|.+|+..|||..++|++|.+.++.
T Consensus 31 ~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 31 EILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 567778899999999999887667789999999999999999999999999999999999864
No 13
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.5e-12 Score=92.59 Aligned_cols=82 Identities=15% Similarity=0.283 Sum_probs=68.3
Q ss_pred CCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCC-CCCcceeE
Q psy16559 87 IKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNK-SPHLRGNV 165 (207)
Q Consensus 87 ~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~V 165 (207)
..|..+.+|.|.|+= +.+ ++ +||++-|++||.|..|.|..+. +...+|++
T Consensus 11 ~~~~~~~~l~V~nlp--~~~----------------t~-----------~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~a 61 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLP--FSL----------------TN-----------NDLYRIFSKYGKVVKVTIMKDKDTRKSKGVA 61 (94)
T ss_dssp SCCCCTTSEEEESCC--TTS----------------CH-----------HHHHHHTTTTSCEEEEEECCCSSSCCCTTCE
T ss_pred CCCCCCCEEEEECCC--CCC----------------CH-----------HHHHHHHHhcCCeEEEEEEeCCCCCCcccEE
Confidence 345567899999983 221 22 5677888999999999998764 35678999
Q ss_pred EEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 166 YVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 166 yVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
||+|.+.++|.+|++.|||..++|++|.++|+
T Consensus 62 fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 62 FILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp EEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred EEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 99999999999999999999999999999986
No 14
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.39 E-value=2.2e-12 Score=95.65 Aligned_cols=63 Identities=27% Similarity=0.413 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||++-|++||.|.++.|..+. +...+|++||+|.+.++|.+|++.|||..++||+|.++|+.
T Consensus 34 ~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 34 DELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp HHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 5677778999999999998653 46789999999999999999999999999999999999974
No 15
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.3e-12 Score=93.28 Aligned_cols=64 Identities=22% Similarity=0.367 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||..-|++||.|..+.|..+.....+|++||+|.+.++|.+|+..|||..++|++|.+.++.-
T Consensus 32 ~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 32 EELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp HHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred HHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 5677788999999999998776778899999999999999999999999999999999999753
No 16
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.1e-12 Score=93.16 Aligned_cols=82 Identities=18% Similarity=0.282 Sum_probs=69.1
Q ss_pred CCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCC-CCCcceeEEE
Q psy16559 89 PSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYV 167 (207)
Q Consensus 89 P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyV 167 (207)
|+.+.+|.|.|+=. .+ ++ +||++-|++||.|..|.|..+. +.+.+|++||
T Consensus 2 ~~~~~~l~v~nlp~--~~----------------t~-----------~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV 52 (95)
T 2dnz_A 2 SSGSSGLYVGSLHF--NI----------------TE-----------DMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 52 (95)
T ss_dssp CSCCCEEEEESCCT--TC----------------CH-----------HHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEE
T ss_pred CCCCcEEEEeCCCC--CC----------------CH-----------HHHHHHHHhcCCEeEEEEeecCCCCceeeEEEE
Confidence 56788999999822 21 22 5677788999999999998764 4678999999
Q ss_pred EeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 168 SYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 168 kF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+|.+.++|.+|+..|||..++|++|.++++..
T Consensus 53 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 53 TFSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp EESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred EECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 99999999999999999999999999999754
No 17
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.38 E-value=3.4e-12 Score=94.14 Aligned_cols=63 Identities=19% Similarity=0.309 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||.+-|++||.|..|.|..+.....+|++||+|.+.++|.+|+..|||..++|++|.+++++
T Consensus 44 ~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 44 ADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 567777899999999999877667789999999999999999999999999999999999874
No 18
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.38 E-value=3.1e-12 Score=90.70 Aligned_cols=63 Identities=22% Similarity=0.478 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||+.-|++||.|.++.|..+ .+...+|++||+|.+.++|.+|+..|||..++|++|.++++.
T Consensus 21 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 21 AAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 567778899999999999876 356789999999999999999999999999999999999874
No 19
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=3.6e-12 Score=92.76 Aligned_cols=65 Identities=12% Similarity=0.338 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
+||..-|++||.|..|.|..+. +...+|++||+|.+.++|.+|+..|||..++|++|.+.++...
T Consensus 23 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 23 EDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp HHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred HHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 5677788999999999998765 5678999999999999999999999999999999999997654
No 20
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.37 E-value=3.2e-12 Score=93.38 Aligned_cols=84 Identities=18% Similarity=0.352 Sum_probs=70.3
Q ss_pred CCCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeE--------EEEccC
Q psy16559 85 NHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQ--------FKVCCN 156 (207)
Q Consensus 85 ~H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~--------v~V~~n 156 (207)
.+..|..+.+|.|.|+=. .+ ++ +||+.-|++||.|.. +.|..+
T Consensus 6 ~~~~~~~~~~l~V~nLp~--~~----------------t~-----------~~l~~~F~~~G~i~~~~~~~~~~v~i~~~ 56 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGE--NV----------------TI-----------ESVADYFKQIGIIKTNKKTGQPMINLYTD 56 (99)
T ss_dssp SCCSCCCCSEEEEECCCS--SC----------------CH-----------HHHHHHHTTTSCBCEETTTTEESEEEEEC
T ss_pred CCCCCCCCCEEEEeCCCC--CC----------------CH-----------HHHHHHHHHhCCEeeccccccccEEEEec
Confidence 455677889999999822 21 22 577778899999999 888765
Q ss_pred -CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 157 -KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 157 -~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
.+...+|++||+|.+.++|.+|++.|||..++||.|.++++
T Consensus 57 ~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 57 RETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp TTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 45678999999999999999999999999999999999986
No 21
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.37 E-value=4e-12 Score=89.36 Aligned_cols=63 Identities=16% Similarity=0.313 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||...|++||.|.++.|..+ .+...+|++||.|.+.++|.+|+..|||..++|++|.+.++.
T Consensus 16 ~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 16 ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp HHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 567778899999999999865 456789999999999999999999999999999999999975
No 22
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.37 E-value=8.5e-13 Score=96.17 Aligned_cols=63 Identities=25% Similarity=0.357 Sum_probs=54.9
Q ss_pred HHHHHHHHhcC-CeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhC-CceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLG-QVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALT-GRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG-~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~Ln-GR~f~GR~I~ae~~~ 198 (207)
+||++.|++|| .|.+|.|..+ .+...+|++||+|.+.++|.+|++.|+ |-.++||+|.++|+.
T Consensus 16 ~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 16 DDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp HHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred HHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 57888889999 8999999865 346789999999999999999999885 557999999999974
No 23
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.3e-12 Score=93.12 Aligned_cols=65 Identities=12% Similarity=0.271 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCeeEE-EEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 136 DDVLPELRSLGQVTQF-KVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v-~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
+||..-|++||.|..+ .|..+ .+...+|++||+|.+.++|.+|+..|||..++|++|.++++.-.
T Consensus 20 ~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 86 (96)
T 1x5t_A 20 KLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 86 (96)
T ss_dssp HHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCC
T ss_pred HHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeccc
Confidence 5677788999999999 88776 55678999999999999999999999999999999999997543
No 24
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.36 E-value=5e-12 Score=91.84 Aligned_cols=65 Identities=14% Similarity=0.336 Sum_probs=58.1
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
+||..-|++||.|.++.|..+. +...+|++||+|.+.++|.+|++.|||..++|+.|.+.++.-.
T Consensus 17 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 17 EQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp HHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred HHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 5677788999999999998763 4577999999999999999999999999999999999998654
No 25
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.36 E-value=2.2e-12 Score=97.49 Aligned_cols=80 Identities=19% Similarity=0.368 Sum_probs=64.9
Q ss_pred CCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEEEE
Q psy16559 89 PSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVS 168 (207)
Q Consensus 89 P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVk 168 (207)
|..|.+|.|.|+= +.+ ++ +||++-|++||.|.+|.|..+.. ..+|++||+
T Consensus 2 P~~~~~lfV~nLp--~~~----------------te-----------~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~ 51 (115)
T 4f25_A 2 PLGSGNIFIKNLD--KSI----------------DN-----------KALYDTFSAFGNILSCKVVCDEN-GSKGYGFVH 51 (115)
T ss_dssp ---CCEEEEESCC--TTC----------------CH-----------HHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEE
T ss_pred CCCCCEEEECCCC--CCC----------------CH-----------HHHHHHHhccCCEEEEEEeecCC-CCCceEEEE
Confidence 6677789999982 221 33 56777789999999999987643 468999999
Q ss_pred eCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 169 YSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 169 F~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
|.+.++|.+|++.|||..++||+|.+.++.
T Consensus 52 f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 52 FETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp ESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 999999999999999999999999999864
No 26
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=7.2e-12 Score=91.93 Aligned_cols=84 Identities=20% Similarity=0.300 Sum_probs=69.7
Q ss_pred CCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeE
Q psy16559 86 HIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNV 165 (207)
Q Consensus 86 H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~V 165 (207)
-..+..+.+|.|.|+= +.+ ++ +||++-|++||.|..|.|..+... .+|++
T Consensus 9 ~~~~~~~~~l~V~nlp--~~~----------------t~-----------~~l~~~f~~~G~v~~v~i~~~~~~-~~g~a 58 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIP--FRF----------------RD-----------PDLRQMFGQFGKILDVEIIFNERG-SKGFG 58 (103)
T ss_dssp SCCSCCCCEEEEESCC--TTC----------------CH-----------HHHHHHGGGTSCEEEEEEECCTTT-TCCEE
T ss_pred CCCCCCCCEEEEeCCC--CCC----------------CH-----------HHHHHHHHhcCCeEEEEEEecCCC-CcEEE
Confidence 3455678899999982 221 22 567777899999999999877543 78999
Q ss_pred EEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 166 YVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 166 yVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
||.|.+.++|.+|+..|||..++|++|.+.++..
T Consensus 59 fV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 59 FVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp EEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred EEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 9999999999999999999999999999999754
No 27
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=3.1e-12 Score=93.89 Aligned_cols=83 Identities=20% Similarity=0.313 Sum_probs=70.0
Q ss_pred CCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEE
Q psy16559 87 IKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVY 166 (207)
Q Consensus 87 ~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~Vy 166 (207)
..+..+.+|.|.|+=. .+ ++ +||+.-|++||.|..|.|..+ ....+|++|
T Consensus 10 ~~~~~~~~l~V~nlp~--~~----------------t~-----------~~l~~~F~~~G~i~~v~i~~~-~g~~~g~af 59 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDD--GI----------------DD-----------ERLRKAFSPFGTITSAKVMME-GGRSKGFGF 59 (103)
T ss_dssp CCCSSCCCEEEECCCT--TC----------------CH-----------HHHHHTTTTTSCEEEEEEEEC-SSSEEEEEE
T ss_pred cCCCCCCEEEEeCCCC--CC----------------CH-----------HHHHHHHHhcCCEEEEEEEcC-CCCcCEEEE
Confidence 3455788999999822 21 22 567777899999999999887 667899999
Q ss_pred EEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 167 VSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 167 VkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
|+|.+.++|.+|+..|||..++|++|.+.++..
T Consensus 60 V~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 60 VCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp EEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred EEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 999999999999999999999999999999754
No 28
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=5.3e-12 Score=92.75 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=70.3
Q ss_pred CCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCC-CCCcceeE
Q psy16559 87 IKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNK-SPHLRGNV 165 (207)
Q Consensus 87 ~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~V 165 (207)
..+..+.+|.|.|+=. .+ ++ +||+.-|++||.|..|.|..+. +.+.+|++
T Consensus 10 ~~~~~~~~l~V~nlp~--~~----------------t~-----------~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~a 60 (105)
T 1x5u_A 10 SERNQDATVYVGGLDE--KV----------------SE-----------PLLWELFLQAGPVVNTHMPKDRVTGQHQGYG 60 (105)
T ss_dssp CCCCTTTEEEEECCCT--TC----------------CH-----------HHHHHHHHTTSCEEEEECCBCSSSCSBCSCE
T ss_pred ccCCCCCEEEEeCCCC--CC----------------CH-----------HHHHHHHHhcCCeEEEEEEecCCCCcCCcEE
Confidence 3455788999999822 21 22 5677788999999999998764 56789999
Q ss_pred EEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 166 YVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 166 yVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
||+|.+.++|.+|+..|||..++|++|.+.++..
T Consensus 61 fV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 61 FVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp EEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred EEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 9999999999999999999999999999999754
No 29
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.35 E-value=8.1e-12 Score=93.36 Aligned_cols=84 Identities=19% Similarity=0.394 Sum_probs=69.9
Q ss_pred CCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCC-CCCcceeE
Q psy16559 87 IKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNK-SPHLRGNV 165 (207)
Q Consensus 87 ~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~V 165 (207)
..+..+.+|.|.|+=. .+ ++ +||+.-|++||.|..|.|..+. ....+|++
T Consensus 10 ~~~~~~~~l~V~nlp~--~~----------------t~-----------~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~a 60 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSP--EI----------------TT-----------EDIKAAFAPFGRISDARVVKDMATGKSKGYG 60 (115)
T ss_dssp CCSTTCEEEEEESCCT--TC----------------CH-----------HHHHHHHGGGSCEEEEEEEECTTTCCEEEEE
T ss_pred CCCCCCcEEEEeCCCC--CC----------------CH-----------HHHHHHHHhcCCeEEEEEEEcCCCCCcceEE
Confidence 3455788999998822 21 22 5777888999999999998763 56789999
Q ss_pred EEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 166 YVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 166 yVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
||+|.+.++|.+|+..|||..++|+.|.+.++.-
T Consensus 61 fV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (115)
T 2dgo_A 61 FVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 94 (115)
T ss_dssp EEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred EEEECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 9999999999999999999999999999999743
No 30
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.9e-12 Score=93.46 Aligned_cols=93 Identities=18% Similarity=0.249 Sum_probs=75.0
Q ss_pred ccccccCcccCCCCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEE
Q psy16559 74 GACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKV 153 (207)
Q Consensus 74 GaCR~GdrCSr~H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V 153 (207)
|.|+.+......+..+..+.+|.|.|+-. .+ ++ +||..-|++||.|. +.+
T Consensus 1 Gs~~~~~~~~~~~~~~~~~~~l~V~nL~~--~~----------------t~-----------~~l~~~F~~~G~v~-~~~ 50 (97)
T 2e5j_A 1 GSSGSSGPGSPPGEGAPLAADVYVGNLPR--DA----------------RV-----------SDLKRALRELGSVP-LRL 50 (97)
T ss_dssp CCCCCCCCCCCCCSSSCCCCEEEEECCCT--TC----------------CH-----------HHHHHHHHHTTCCC-SEE
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEeCCCC--cC----------------cH-----------HHHHHHHHhcCCEE-EEE
Confidence 56777777777788888899999999832 21 22 56777789999996 444
Q ss_pred ccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 154 CCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 154 ~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
.. +..+|++||.|.+.++|.+|+..|||..++|++|.++++..
T Consensus 51 ~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 51 TW---QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp EE---ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred Ec---CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 43 25689999999999999999999999999999999999753
No 31
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=8.1e-12 Score=93.06 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||.+-|++||.|.+|.|..+.....+|++||+|.+.++|.+|+..|||..++|+.|.++++..
T Consensus 30 ~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 30 KKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp HHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 5677788999999999998876677899999999999999999999999999999999999753
No 32
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=4.4e-12 Score=95.09 Aligned_cols=64 Identities=19% Similarity=0.374 Sum_probs=55.9
Q ss_pred HHHH---HHHHhcCCeeEEEEccCCC----CCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVL---PELRSLGQVTQFKVCCNKS----PHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~---~Ec~kyG~V~~v~V~~n~~----~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||. +.|++||.|.++.|..+.. .+++|++||+|.+.++|.+|+..|||..++||+|.+.++.-
T Consensus 30 ~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~ 100 (111)
T 2cpi_A 30 PEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTT 100 (111)
T ss_dssp HHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCC
T ss_pred HHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccc
Confidence 4566 7789999999999987642 25679999999999999999999999999999999999744
No 33
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=5.3e-12 Score=92.63 Aligned_cols=85 Identities=15% Similarity=0.291 Sum_probs=70.3
Q ss_pred CCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccC-CCCCcceeE
Q psy16559 87 IKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCN-KSPHLRGNV 165 (207)
Q Consensus 87 ~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~V 165 (207)
..+..+.+|.|.|+=. . +++ +||..-|++||.|..|.|..+ .+...+|++
T Consensus 10 ~~~~~~~~l~V~nlp~--~----------------~t~-----------~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~a 60 (103)
T 2cq0_A 10 RRADDNATIRVTNLSE--D----------------TRE-----------TDLQELFRPFGSISRIYLAKDKTTGQSKGFA 60 (103)
T ss_dssp CCCSSSEEEEEESCCT--T----------------CCH-----------HHHHTTSTTTCCEEEEEEEECSSSCSEEEEE
T ss_pred CCCCCCCEEEEeCCCC--C----------------CCH-----------HHHHHHHHhCCCeEEEEEeecCCCCceeeEE
Confidence 3456788999998832 1 122 567777799999999999876 356789999
Q ss_pred EEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 166 YVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 166 yVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
||+|.+.++|.+|+..|||..++|+.|.+.++.-.
T Consensus 61 fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 95 (103)
T 2cq0_A 61 FISFHRREDAARAIAGVSGFGYDHLILNVEWAKPS 95 (103)
T ss_dssp EEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred EEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCC
Confidence 99999999999999999999999999999997543
No 34
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=3.8e-12 Score=93.09 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
+||..-|++||.|..|.|..+ .+...+|++||+|.+.++|.+|+..|||..++|++|.+.++...
T Consensus 27 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2cqb_A 27 KVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM 92 (102)
T ss_dssp HHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred HHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCC
Confidence 567778899999999999765 44578999999999999999999999999999999999997543
No 35
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.33 E-value=7.4e-12 Score=95.09 Aligned_cols=84 Identities=18% Similarity=0.276 Sum_probs=70.7
Q ss_pred CCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEEE
Q psy16559 88 KPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYV 167 (207)
Q Consensus 88 ~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyV 167 (207)
.+..+.+|.|.|+= +.+ ++ +||..-|++||.|..|.|..+.....+|++||
T Consensus 31 ~~~~~~~l~V~nlp--~~~----------------t~-----------~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV 81 (124)
T 2kt5_A 31 GVETGAKLLVSNLD--FGV----------------SD-----------ADIQELFAEFGTLKKAAVDYDRSGRSLGTADV 81 (124)
T ss_dssp CCSSCEEEEEESCC--SSC----------------CH-----------HHHHHHHHTTSCCSEEEEECCSSSSCCSEEEE
T ss_pred CCCCCCEEEEeCCC--CCC----------------CH-----------HHHHHHHHhcCCeeEEEEEECCCCCEeeEEEE
Confidence 45567899999982 221 22 56777789999999999988766778999999
Q ss_pred EeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 168 SYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 168 kF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
+|.+.++|.+|+..|||..++|+.|.++++...
T Consensus 82 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 82 HFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp EESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred EECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 999999999999999999999999999997653
No 36
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=7.6e-12 Score=92.04 Aligned_cols=65 Identities=15% Similarity=0.313 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCeeEEEEccCC--CCCcceeEEEEeCChHHHHHHHHHh-CCceeCCeEEEEEecCcC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK--SPHLRGNVYVSYSNEREALRAFYAL-TGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~--~~h~~G~VyVkF~~~e~A~~Ai~~L-nGR~f~GR~I~ae~~~v~ 200 (207)
+||+.-|++||.|..|.|..+. ....+|++||+|.+.++|.+|+..| ||..++|++|.++++.-.
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~ 97 (107)
T 2cph_A 30 REIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSE 97 (107)
T ss_dssp HHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCC
T ss_pred HHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCC
Confidence 5677788999999999998762 5677999999999999999999999 999999999999997543
No 37
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=6.3e-12 Score=91.91 Aligned_cols=85 Identities=21% Similarity=0.304 Sum_probs=69.8
Q ss_pred CCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCC-CCCccee
Q psy16559 86 HIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNK-SPHLRGN 164 (207)
Q Consensus 86 H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~ 164 (207)
...+..+.+|.|.|+=. .+ ++ +||+.-|++||.|..|.|..+. +...+|+
T Consensus 6 ~~~~~~~~~l~v~nLp~--~~----------------t~-----------~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~ 56 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSF--DT----------------NE-----------QSLEQVFSKYGQISEVVVVKDRETQRSRGF 56 (102)
T ss_dssp CCCCCCCSEEEEESCCT--TC----------------CH-----------HHHHHHHHHHSCCCEEEECCCSSSCSCCSE
T ss_pred CCCCCCCCEEEEECCCC--CC----------------CH-----------HHHHHHHHhcCCeEEEEEEeCCCCCCcccE
Confidence 34556788999999822 21 22 5677778899999999998763 4567999
Q ss_pred EEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 165 VYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 165 VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||+|.+.++|.+|+..|||..++|++|.++++.-
T Consensus 57 afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 91 (102)
T 1x5s_A 57 GFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 91 (102)
T ss_dssp EEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEEC
T ss_pred EEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 99999999999999999999999999999999743
No 38
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.33 E-value=9e-12 Score=91.53 Aligned_cols=64 Identities=23% Similarity=0.334 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCC---eEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGG---KQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~G---R~I~ae~~~v 199 (207)
+||..-|++||.|..|.|..+.....+|++||.|.+.++|.+|+..|||..+.| ++|.+.++.-
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~ 96 (105)
T 2dnh_A 30 EDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADT 96 (105)
T ss_dssp HHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCS
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECcc
Confidence 567778899999999999887667789999999999999999999999999988 9999999754
No 39
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=6.7e-12 Score=92.08 Aligned_cols=64 Identities=22% Similarity=0.330 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||..-|++||.|..|.|..+. +...+|++||+|.+.++|.+|+..|||..++|++|.+.++..
T Consensus 28 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 28 DSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARY 92 (103)
T ss_dssp HHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred HHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCc
Confidence 5677788999999999998763 367899999999999999999999999999999999999754
No 40
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=6.7e-12 Score=93.94 Aligned_cols=62 Identities=21% Similarity=0.332 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||+.-|++||.|..+.|..+.+ ..+|++||+|.+.++|.+|+..|||..++|++|.++++.
T Consensus 44 ~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 44 PDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp HHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 56777889999999999987653 478999999999999999999999999999999999974
No 41
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=2.2e-11 Score=89.29 Aligned_cols=63 Identities=19% Similarity=0.316 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||+.-|++||.|..|.|..+... .+|++||+|.+.++|.+|+..|||..++|++|.+.++.-
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 30 VLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp HHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred HHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 567777899999999999887543 589999999999999999999999999999999999754
No 42
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.31 E-value=3e-11 Score=92.44 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
+||+.-|++||.|..|.|..+ .+...+|++||+|.+.++|.+|+..|||..++||+|.++|+
T Consensus 78 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 78 KVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp HHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred HHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 567778899999999999776 44678999999999999999999999999999999999874
No 43
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.30 E-value=1.5e-11 Score=92.02 Aligned_cols=64 Identities=27% Similarity=0.312 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||++-|++||.|..|.|..+. +...+|++||+|.+.++|.+|+..|||..++|++|.++++.-
T Consensus 40 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 104 (115)
T 2cpz_A 40 QDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 104 (115)
T ss_dssp HHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence 5777788999999999998764 567899999999999999999999999999999999999754
No 44
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.30 E-value=1.5e-11 Score=91.15 Aligned_cols=63 Identities=22% Similarity=0.424 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||..-|++||.|..|.|..+ .+...+|++||+|.+.++|.+|+..|||..++|++|.+.++.
T Consensus 41 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 41 DEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp HHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred HHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 567778899999999999765 346779999999999999999999999999999999999974
No 45
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.30 E-value=1.2e-11 Score=92.47 Aligned_cols=81 Identities=21% Similarity=0.346 Sum_probs=67.6
Q ss_pred CCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEEE
Q psy16559 88 KPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYV 167 (207)
Q Consensus 88 ~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyV 167 (207)
.|..+++|.|.|+= +.+ ++ +||..-|++||.|..+.|..+. ..+|++||
T Consensus 4 ~~~~~~~l~V~nlp--~~~----------------t~-----------~~l~~~F~~~G~v~~v~i~~~~--~~~g~afV 52 (115)
T 3lqv_A 4 PPEVNRILYIRNLP--YKI----------------TA-----------EEMYDIFGKYGPIRQIRVGNTP--ETRGTAYV 52 (115)
T ss_dssp CTTCCSEEEEESCC--TTC----------------CH-----------HHHHHHHHTTSCEEEEEEECST--TTTTCEEE
T ss_pred CCCCCCEEEEeCCC--CCC----------------CH-----------HHHHHHHHhcCCeEEEEEeeCC--CCCcEEEE
Confidence 45678899999982 221 22 5677888999999999998643 44899999
Q ss_pred EeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 168 SYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 168 kF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
.|.+.++|.+|+..|||..++|+.|.+.++..
T Consensus 53 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 53 VYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp EESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred EECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 99999999999999999999999999999753
No 46
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.2e-11 Score=91.03 Aligned_cols=63 Identities=22% Similarity=0.430 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||..-|++||.|..|.|..+. +...+|++||+|.+.++|.+|+..|||..++|+.|.+.++.
T Consensus 38 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 38 EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred HHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 5677788999999999997653 46779999999999999999999999999999999999863
No 47
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.30 E-value=4.5e-12 Score=89.56 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCe-EEEE
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGK-QIRG 194 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR-~I~a 194 (207)
+||...|++||.|.++.|.+ .+.+++|++||+|.+.++|.+|+..|||..++|| +|.+
T Consensus 22 ~~l~~~F~~~G~i~~v~i~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 22 NVIHKIFSKFGKITNDFYPE-EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHHHHHHTTCCEEEEECCC-BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHHHhhcCCeEEEEecC-CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 78888999999999999984 4457899999999999999999999999999999 8865
No 48
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.29 E-value=1e-11 Score=91.56 Aligned_cols=62 Identities=10% Similarity=0.157 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCeeEEEEccCCC-CCcceeEEEEeCChHHHHHHHHHhCCceeCC-eEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKS-PHLRGNVYVSYSNEREALRAFYALTGRFYGG-KQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~-~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~G-R~I~ae~~ 197 (207)
++|.+.|++||.|.++.|+.+.. ..++|++||.|.+.++|.+|++.|||..++| |+|.+.++
T Consensus 27 ~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 27 KALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp HHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred HHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 68888999999999999986643 6789999999999999999999999999999 99999986
No 49
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.29 E-value=8.7e-12 Score=93.45 Aligned_cols=64 Identities=14% Similarity=0.295 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||+.-|++||.|..|.|..+ .+...+|++||+|.+.++|.+|++.|||..++||+|.++++..
T Consensus 41 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 41 DMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp HHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred HHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence 567778899999999999765 3467899999999999999999999999999999999999753
No 50
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=1.9e-11 Score=88.89 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=66.2
Q ss_pred CCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeE
Q psy16559 86 HIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNV 165 (207)
Q Consensus 86 H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~V 165 (207)
-..+..+.+|.|.|+-. .+ ++ +||..-|++||.|.+|.+..+ +|++
T Consensus 11 ~~~~~~~~~l~V~nlp~--~~----------------t~-----------~~l~~~F~~~G~v~~v~~~~~-----~g~a 56 (97)
T 1why_A 11 YGKANPTTRLWVGGLGP--NT----------------SL-----------AALAREFDRFGSIRTIDHVKG-----DSFA 56 (97)
T ss_dssp CCCCCCCSCEEEECCCS--SC----------------CH-----------HHHHHHHHTTSCEEEEEECSS-----SCCE
T ss_pred CCCCCCCCEEEEeCCCC--CC----------------CH-----------HHHHHHHHhcCCeeEEEEeCC-----CCEE
Confidence 34556778999998833 21 22 567778899999999999754 7999
Q ss_pred EEEeCChHHHHHHHHHhCCceeC--CeEEEEEecCc
Q psy16559 166 YVSYSNEREALRAFYALTGRFYG--GKQIRGQFCNV 199 (207)
Q Consensus 166 yVkF~~~e~A~~Ai~~LnGR~f~--GR~I~ae~~~v 199 (207)
||+|.+.++|.+|+..|||..++ |++|.++|+.-
T Consensus 57 fV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 57 YIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp EEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred EEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 99999999999999999999999 99999999753
No 51
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.29 E-value=1.6e-11 Score=93.13 Aligned_cols=67 Identities=16% Similarity=0.324 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCcc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLW 202 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f 202 (207)
+||..-|++||.|..|.|..+.+...+|++||+|.+.++|.+|++.|||..++|++|.++++.-...
T Consensus 22 ~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 22 KMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp HHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred HHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 5677788999999999998876677899999999999999999999999999999999999865443
No 52
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.28 E-value=1.6e-11 Score=88.04 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||+.-|++||.|..+.|..+ ....+|++||+|.+.++|.+|+..|||..++|++|.++++.-
T Consensus 23 ~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 23 KMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp HHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred HHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 577778899999999999874 456799999999999999999999999999999999999754
No 53
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=1.3e-11 Score=89.53 Aligned_cols=65 Identities=15% Similarity=0.269 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCCC----CCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKS----PHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~----~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
+||++-|++||.|..|.|..+.. ...+|++||+|.+.++|.+|+..|||..++|++|.+.++.-.
T Consensus 20 ~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (98)
T 2cpf_A 20 ETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERA 88 (98)
T ss_dssp HHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCS
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCC
Confidence 56777789999999999976432 267899999999999999999999999999999999997543
No 54
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.1e-11 Score=94.50 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=67.0
Q ss_pred CCCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCccee
Q psy16559 85 NHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGN 164 (207)
Q Consensus 85 ~H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~ 164 (207)
.|-.|..+.+|.|.|+=. .+ ++ +||++-|++||.|.+|.|... +|+
T Consensus 9 ~~~~~~~~~~LfV~nLp~--~v----------------te-----------~dL~~lF~~fG~V~~v~i~~~-----kGf 54 (105)
T 1sjq_A 9 HHGSGVPSRVIHIRKLPI--DV----------------TE-----------GEVISLGLPFGKVTNLLMLKG-----KNQ 54 (105)
T ss_dssp ---CCCCCCEEEECSCCT--TS----------------CH-----------HHHHHHHHHHCCEEEEEEETT-----TTE
T ss_pred ccCCCCCCCEEEEeCCCC--CC----------------CH-----------HHHHHHHHhcCCEEEEEEEcC-----CCE
Confidence 466888999999999832 21 22 567778899999999999863 799
Q ss_pred EEEEeCChHHHHHHHHHhC--CceeCCeEEEEEecCcC
Q psy16559 165 VYVSYSNEREALRAFYALT--GRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 165 VyVkF~~~e~A~~Ai~~Ln--GR~f~GR~I~ae~~~v~ 200 (207)
+||+|.+.++|.+|+..|+ |..++||+|.+.|+...
T Consensus 55 aFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 55 AFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp EEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred EEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 9999999999999999986 48999999999997643
No 55
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=3.4e-11 Score=89.29 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||++-|++||.|..|.|..+ ...+|++||+|.+.++|.+|++.|||..++|++|.++++..
T Consensus 37 ~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 37 KDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp HHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred HHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 577788899999999999653 35789999999999999999999999999999999999754
No 56
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.28 E-value=1.4e-11 Score=91.77 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=55.4
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPL 201 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~ 201 (207)
+++++-|.+||+|.++++.. ++|++||+|.++++|.+|++.|||..++||+|.|.+....+
T Consensus 22 ~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~~ 82 (89)
T 2wbr_A 22 PTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSENE 82 (89)
T ss_dssp HHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCHHH
T ss_pred HHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCHHH
Confidence 57888899999999999954 48999999999999999999999999999999999986544
No 57
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.3e-11 Score=92.48 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=68.0
Q ss_pred CCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeE
Q psy16559 86 HIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNV 165 (207)
Q Consensus 86 H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~V 165 (207)
+.....+++|.+.|+=. . .++ +||.+-|++||+|.+|.|..+.....+|++
T Consensus 5 ~~~~~~~~~lfV~~Lp~--~----------------~te-----------~~L~~~F~~~G~v~~v~i~~d~~g~~rG~a 55 (103)
T 1s79_A 5 LKNDVKNRSVYIKGFPT--D----------------ATL-----------DDIKEWLEDKGQVLNIQMRRTLHKAFKGSI 55 (103)
T ss_dssp CSSCSGGGCEEEECCCT--T----------------CCH-----------HHHHHHHHTSSCEEEEEEECCCTTSCCCEE
T ss_pred ccccCCCCEEEEECCCC--C----------------CCH-----------HHHHHHHhhcCCEEEEEEEECCCCCCccEE
Confidence 44555678999988832 1 122 567777899999999999877667789999
Q ss_pred EEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 166 YVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 166 yVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
||.|.+.++|.+|+. +||..|+||+|.+.+.
T Consensus 56 FV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 56 FVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp EEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred EEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 999999999999999 9999999999999874
No 58
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=8.1e-12 Score=94.05 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCccc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWS 203 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f~ 203 (207)
+||+..|++||.|..|.|.. .+|++||.|.+.++|.+|+..|||..|+||+|.++|++...|.
T Consensus 25 ~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 87 (111)
T 1whx_A 25 AEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFG 87 (111)
T ss_dssp HHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTTC
T ss_pred HHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCccC
Confidence 57788889999999999874 4799999999999999999999999999999999999877664
No 59
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.28 E-value=2.6e-11 Score=94.67 Aligned_cols=62 Identities=23% Similarity=0.313 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
+||++-|++||.|..+.|..+. +...+|++||+|.+.++|.+|+..|||+.++||+|.+.++
T Consensus 109 ~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 109 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 5778888999999999998763 5678999999999999999999999999999999999986
No 60
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.28 E-value=1.3e-11 Score=87.42 Aligned_cols=63 Identities=22% Similarity=0.447 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCeeEEEEccCCC-CC-cceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKS-PH-LRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~-~h-~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||...|++||.|..+.|..+.. .. .+|++||+|.+.++|.+|+..|||..++|+.|.++++.
T Consensus 19 ~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 19 DHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp HHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 57777889999999999976542 22 68999999999999999999999999999999999874
No 61
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.27 E-value=7.7e-12 Score=92.73 Aligned_cols=63 Identities=22% Similarity=0.347 Sum_probs=55.4
Q ss_pred HHHHHHHHhcCC--eeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCc----eeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQ--VTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGR----FYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~--V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR----~f~GR~I~ae~~~ 198 (207)
+||++.|++||. |.+|.|..+. +..++|++||+|.+.++|.+|++.|||. .++||+|.++|+.
T Consensus 24 e~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 24 DSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp HHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred HHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence 678888899995 6799987763 4678999999999999999999999997 6999999999974
No 62
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.27 E-value=1.7e-11 Score=92.00 Aligned_cols=62 Identities=24% Similarity=0.301 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
+||++-|++||.|.++.|..+ .+...+|++||+|.+.++|.+|+..|||..++||+|.++|+
T Consensus 55 ~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 55 TDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp HHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred HHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 567778899999999999865 34577999999999999999999999999999999999986
No 63
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.27 E-value=3.4e-11 Score=92.85 Aligned_cols=63 Identities=16% Similarity=0.313 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||...|++||.|..+.|..+ .+...+|++||+|.+.++|.+|+..|||+.++||+|.+.|+.
T Consensus 102 ~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 102 ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 577788899999999999765 456789999999999999999999999999999999999863
No 64
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=3.3e-11 Score=87.90 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=53.8
Q ss_pred HHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 138 VLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 138 V~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+..-|++||.|.+|.|..+... +|++||+|.+.++|.+|+..|||..++||+|.++++..
T Consensus 30 l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~ 89 (96)
T 2dgx_A 30 LQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATG 89 (96)
T ss_dssp HHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred HHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 3477889999999999876543 89999999999999999999999999999999999754
No 65
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.27 E-value=2.1e-11 Score=86.68 Aligned_cols=63 Identities=22% Similarity=0.477 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||.+-|++||.|.++.|..+. +...+|++||+|.+.++|.+|+ .|||..++|++|.+.++..
T Consensus 21 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 21 EELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred HHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 5677778899999999998763 5678999999999999999999 9999999999999998753
No 66
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=2.6e-11 Score=94.51 Aligned_cols=82 Identities=16% Similarity=0.250 Sum_probs=66.6
Q ss_pred CCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeC
Q psy16559 91 VSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYS 170 (207)
Q Consensus 91 ~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~ 170 (207)
.+.+|.|.|+=. . +++++|. +.+.+-|++||.|.+|.|..+ ...+|++||.|.
T Consensus 28 p~~~LfV~nL~~--~----------------~~e~~L~-------~~L~~~F~~~G~I~~v~i~~~--~~~rG~aFV~F~ 80 (127)
T 2a3j_A 28 PSQVVLITNINP--E----------------VPKEKLQ-------ALLYALASSQGDILDIVVDLS--DDNSGKAYIVFA 80 (127)
T ss_dssp CCSEEEEESCCT--T----------------SCHHHHH-------HHHHHHHHHHSCEEEEEECCC--CSSCCCEEEEES
T ss_pred CCCEEEEeCCCC--C----------------CCHHHHH-------HHHHHHhccCCCeEEEEeccC--CCcCCEEEEEEC
Confidence 367899998832 2 1334444 456677899999999998653 467999999999
Q ss_pred ChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 171 NEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 171 ~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+.++|.+|+..|||..+.||+|.+.|+.-
T Consensus 81 ~~~~A~~Ai~~lng~~l~gr~l~V~~a~~ 109 (127)
T 2a3j_A 81 TQESAQAFVEAFQGYPFQGNPLVITFSET 109 (127)
T ss_dssp SHHHHHHHHHHSTTCCCTTSCCEEEECCC
T ss_pred CHHHHHHHHHHHCCCEeCCCEEEEEEccC
Confidence 99999999999999999999999999754
No 67
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.27 E-value=2e-11 Score=92.62 Aligned_cols=64 Identities=23% Similarity=0.441 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||..-|++||.|..|.|..+. +...+|++||+|.+.++|.+|+..|||..++|+.|.++|+..
T Consensus 37 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 101 (126)
T 3ex7_B 37 EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 101 (126)
T ss_dssp HHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Confidence 5677788999999999997663 567799999999999999999999999999999999999743
No 68
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=7.8e-12 Score=91.54 Aligned_cols=64 Identities=20% Similarity=0.440 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||+.-|++||.|..+.|..+ .+.+.+|++||+|.+.++|.+|++.|||..++|++|.+.++.-
T Consensus 23 ~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 23 EQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred HHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 567778899999999999765 3567799999999999999999999999999999999999754
No 69
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1e-11 Score=91.12 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=57.7
Q ss_pred HHHHHHHHh-cCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCce-eCCeEEEEEecCc
Q psy16559 136 DDVLPELRS-LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRF-YGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~k-yG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~-f~GR~I~ae~~~v 199 (207)
+||..-|++ ||.|..|.|..+.+...+|++||.|.+.++|.+|+..|||.. ++|++|.+.++.-
T Consensus 24 ~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~ 89 (104)
T 2dhg_A 24 GMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIP 89 (104)
T ss_dssp HHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCC
T ss_pred HHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccC
Confidence 567777888 999999999877667789999999999999999999999999 9999999999743
No 70
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.26 E-value=4e-11 Score=88.69 Aligned_cols=64 Identities=16% Similarity=0.342 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhC------CceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALT------GRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~Ln------GR~f~GR~I~ae~~~v 199 (207)
+||..-|++||.|..|.|..+. +.+.+|++||+|.+.++|.+|+..|| |..++|++|.+.++.-
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~ 100 (111)
T 1x4h_A 30 EALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVT 100 (111)
T ss_dssp HHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCC
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCC
Confidence 5677777999999999998653 45689999999999999999999999 9999999999999754
No 71
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=3e-11 Score=88.85 Aligned_cols=86 Identities=21% Similarity=0.313 Sum_probs=69.5
Q ss_pred CCCCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCC--CCc
Q psy16559 84 RNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKS--PHL 161 (207)
Q Consensus 84 r~H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~--~h~ 161 (207)
+....+..+.+|.|.||=. .+ ++ +||..-|++|| |..|.|..+.. ...
T Consensus 7 ~~~~~~~~~~~l~V~nlp~--~~----------------t~-----------~~l~~~F~~~G-i~~v~i~~~~~~~g~~ 56 (104)
T 1wi8_A 7 GSRLPKSPPYTAFLGNLPY--DV----------------TE-----------ESIKEFFRGLN-ISAVRLPREPSNPERL 56 (104)
T ss_dssp CCCCCSSSCEEEEEESCCS--SC----------------CH-----------HHHHHHTTTSC-EEEEECCBCSSCTTSB
T ss_pred CCCCCCCCCCEEEEeCCCC--cC----------------CH-----------HHHHHHHHHCC-ceEEEEecCCCCCCCc
Confidence 3344455778999999822 21 22 56777888999 99999987643 577
Q ss_pred ceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 162 RGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 162 ~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
+|++||+|.+.++|.+|+ .|||..++|++|.+.++...
T Consensus 57 ~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 94 (104)
T 1wi8_A 57 KGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQA 94 (104)
T ss_dssp CSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCC
T ss_pred CeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCC
Confidence 999999999999999999 99999999999999997543
No 72
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2.7e-11 Score=90.26 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCee--------EEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVT--------QFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~--------~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||++-|++||.|. .|.|..+ .+.+.+|++||+|.+.++|.+|+..|||..|+|++|.+.++.-
T Consensus 30 ~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 30 DDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARK 102 (113)
T ss_dssp HHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSC
T ss_pred HHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCC
Confidence 56777889999999 6888776 4567899999999999999999999999999999999999743
No 73
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.25 E-value=4e-11 Score=88.09 Aligned_cols=85 Identities=14% Similarity=0.288 Sum_probs=69.4
Q ss_pred CCCCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCC-CCCcc
Q psy16559 84 RNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNK-SPHLR 162 (207)
Q Consensus 84 r~H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~-~~h~~ 162 (207)
.....+..+.+|.|.||-. .+ ++ +||.+-|++|| |..|.|..+. +.+.+
T Consensus 7 ~~~~~~~~~~~l~V~nLp~--~~----------------t~-----------~~l~~~F~~~g-i~~v~i~~~~~~g~~~ 56 (103)
T 2dng_A 7 GKELPTEPPYTAYVGNLPF--NT----------------VQ-----------GDIDAIFKDLS-IRSVRLVRDKDTDKFK 56 (103)
T ss_dssp CCCCCSSSCEEEEEESCCT--TC----------------CH-----------HHHHHHTTTSC-EEEEEEEECSSSCSEE
T ss_pred CCCCCCCCCeEEEEeCCCC--CC----------------CH-----------HHHHHHHHhCC-ceEEEEeecCCCCccc
Confidence 3455666789999999832 21 22 56777778998 9999998664 46789
Q ss_pred eeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 163 GNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 163 G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
|++||+|.+.++|.+|+ .|||..++|++|.++++..
T Consensus 57 g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 57 GFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp EEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCC
T ss_pred eEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecC
Confidence 99999999999999999 9999999999999999754
No 74
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=2.8e-11 Score=87.93 Aligned_cols=65 Identities=12% Similarity=0.290 Sum_probs=57.3
Q ss_pred HHHHHHHHhcCCee-EEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeE----EEEEecCcC
Q psy16559 136 DDVLPELRSLGQVT-QFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQ----IRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~V~-~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~----I~ae~~~v~ 200 (207)
+||+.-|++||.|. .+.|..+. +.+.+|++||+|.+.++|.+|+..|||..++|+. |.+.|+...
T Consensus 24 ~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 24 NFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp HHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred HHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 56777789999999 99998763 5678999999999999999999999999999999 999987543
No 75
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=5.2e-11 Score=86.68 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||..-|++||.|..|.|..+. +...+|++||+|.+.++|.+|+. |||..++|++|.+.++.-
T Consensus 25 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~ 88 (99)
T 2dgs_A 25 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEP 88 (99)
T ss_dssp HHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCC
T ss_pred HHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCC
Confidence 5677778899999999998753 45678999999999999999999 999999999999999754
No 76
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.25 E-value=1.6e-11 Score=95.06 Aligned_cols=64 Identities=22% Similarity=0.333 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||.+-|++||.|..|.|..+. +...+|++||+|.+.++|.+|+..|||..++|++|.++|+..
T Consensus 61 ~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 61 RDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp HHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 5677788999999999998663 457799999999999999999999999999999999998754
No 77
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.24 E-value=3.2e-11 Score=91.12 Aligned_cols=76 Identities=13% Similarity=0.185 Sum_probs=64.0
Q ss_pred CCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeC
Q psy16559 91 VSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYS 170 (207)
Q Consensus 91 ~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~ 170 (207)
.|+||.++|+=. .. ++ +|+..-|++||.|.+|.|.. .+|.+||+|.
T Consensus 20 ps~~l~V~NLp~--~~----------------te-----------~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~ 65 (100)
T 3r27_A 20 ASPVVHIRGLID--GV----------------VE-----------ADLVEALQEFGPISYVVVMP-----KKRQALVEFE 65 (100)
T ss_dssp CCSEEEEESCCT--TC----------------CH-----------HHHHHHHGGGSCEEEEEEET-----TTTEEEEEES
T ss_pred CCcEEEEeCCCC--CC----------------CH-----------HHHHHHHhccCCEEEEEEEc-----CCCEEEEEEC
Confidence 689999999932 21 22 56778889999999999975 3799999999
Q ss_pred ChHHHHHHHHHhCCce--eCCeEEEEEecCcC
Q psy16559 171 NEREALRAFYALTGRF--YGGKQIRGQFCNVP 200 (207)
Q Consensus 171 ~~e~A~~Ai~~LnGR~--f~GR~I~ae~~~v~ 200 (207)
+.++|.+|+..|||.- ++||+|.++|+.-.
T Consensus 66 ~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 66 DVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp SHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 9999999999999974 89999999998643
No 78
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=6.1e-11 Score=88.84 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||++-|++||.|..|.|..+. +.+.+|++||+|.+.++|.+|+..||| .|+|++|.++++..
T Consensus 32 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 32 ASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYL 95 (116)
T ss_dssp HHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTT
T ss_pred HHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEccc
Confidence 5677788999999999998763 467899999999999999999999999 99999999999743
No 79
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.24 E-value=5.8e-11 Score=87.19 Aligned_cols=78 Identities=12% Similarity=0.220 Sum_probs=63.2
Q ss_pred CCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeE
Q psy16559 86 HIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNV 165 (207)
Q Consensus 86 H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~V 165 (207)
+..+..+.+|.|.|+=.. .+ ++ +||+.-|++||.|..+.|. +|++
T Consensus 16 ~~~~~~~~~l~V~nLp~~-~~----------------t~-----------~~L~~~F~~~G~v~~v~i~-------~g~a 60 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLK-NV----------------SK-----------EDLFRIFSPYGHIMQINIK-------NAFG 60 (97)
T ss_dssp ---CCTTCEEEEESCCSS-CC----------------CH-----------HHHHHHHGGGSCEEEEEEC-------SSEE
T ss_pred cCCCCCCCEEEEeCCCcc-cC----------------CH-----------HHHHHHHHhcCCEEEEEEe-------CCEE
Confidence 344557889999988320 21 22 5677788999999999993 6999
Q ss_pred EEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 166 YVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 166 yVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
||.|.+.++|.+|+..|||..++|++|.++++.
T Consensus 61 fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 61 FIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp EEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred EEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 999999999999999999999999999999974
No 80
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.23 E-value=4.3e-11 Score=87.99 Aligned_cols=65 Identities=18% Similarity=0.324 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCcee---CCeEEEEEecCcC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFY---GGKQIRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f---~GR~I~ae~~~v~ 200 (207)
+||+.-|++||.|..|.|..+. +...+|++||+|.+.++|.+|+..|||..+ +|++|.+.++.-.
T Consensus 28 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 96 (106)
T 2dgp_A 28 KDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE 96 (106)
T ss_dssp HHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCC
T ss_pred HHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcc
Confidence 5777788999999999998763 356789999999999999999999999988 9999999997543
No 81
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=8.3e-11 Score=84.34 Aligned_cols=82 Identities=21% Similarity=0.278 Sum_probs=68.3
Q ss_pred CCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEE
Q psy16559 87 IKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVY 166 (207)
Q Consensus 87 ~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~Vy 166 (207)
..+..+.+|.|.|+=. .+ ++ +||++-|++| .|..+.|..+.....+|++|
T Consensus 5 ~~~~~~~~l~v~nLp~--~~----------------t~-----------~~l~~~F~~~-~i~~v~i~~~~~g~~~g~af 54 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPF--NV----------------TE-----------KNVMEFLAPL-KPVAIRIVRNAHGNKTGYIF 54 (91)
T ss_dssp CCCCCCCEEEEECCCS--SC----------------CH-----------HHHHHHHTTS-CCSEEEEEECTTSCEEEEEE
T ss_pred CCCCCccEEEEECCCC--CC----------------CH-----------HHHHHHHhhC-CceEEEEEECCCCCCceEEE
Confidence 4556788999999832 21 22 5677778889 89999998876677899999
Q ss_pred EEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 167 VSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 167 VkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
|.|.+.++|.+|+. |||..++||.|.+.++..
T Consensus 55 V~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 55 VDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp EECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred EEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 99999999999999 999999999999999754
No 82
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.23 E-value=4.1e-11 Score=89.86 Aligned_cols=57 Identities=12% Similarity=0.366 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||+.-|++||.|..+.|. +|++||.|.+.++|.+|+..|||..++|++|.++|+..
T Consensus 46 ~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 46 SELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp HHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred HHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 5677888999999999997 69999999999999999999999999999999999754
No 83
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=9.5e-11 Score=85.31 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
+||+.-|++||.|..|.|. ..+|++||.|.+.++|.+|+..|||..++|++|.+.++.-.
T Consensus 28 ~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 28 TLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp HHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred HHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 5677788999999999995 34799999999999999999999999999999999997543
No 84
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.22 E-value=6.6e-11 Score=92.80 Aligned_cols=64 Identities=22% Similarity=0.411 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||..-|++||.|..+.|..+. +.+.+|++||+|.+.++|.+|+..|||..++||+|.+.++..
T Consensus 85 ~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 85 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp HHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred HHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 5777788999999999998763 567899999999999999999999999999999999999754
No 85
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.22 E-value=5.4e-11 Score=91.61 Aligned_cols=65 Identities=17% Similarity=0.309 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
+||+.-|++||.|..|.|..+. +.+.+|++||+|.+.++|.+|+..|||..++|+.|.+.++...
T Consensus 57 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 122 (139)
T 1u6f_A 57 VQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASG 122 (139)
T ss_dssp HHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred HHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 5677788899999999997653 4577999999999999999999999999999999999998654
No 86
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=6.2e-11 Score=88.04 Aligned_cols=59 Identities=17% Similarity=0.342 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||+.-|++||.|..|.|..+ +|++||.|.+.++|.+|+..|||..++|++|.+.++..
T Consensus 40 ~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 40 QLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp HHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred HHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 567777899999999999865 79999999999999999999999999999999999754
No 87
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=6.7e-11 Score=83.50 Aligned_cols=57 Identities=11% Similarity=0.232 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHh-CCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYAL-TGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~L-nGR~f~GR~I~ae~~ 197 (207)
+||+.-|++||.|..+.+..+ +|++||+|.+.++|.+|+..| ||..++|++|.++|+
T Consensus 27 ~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 27 TDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp HHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred HHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 567778899999999999863 799999999999999999999 999999999999986
No 88
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.21 E-value=4.2e-11 Score=92.01 Aligned_cols=93 Identities=10% Similarity=0.211 Sum_probs=72.3
Q ss_pred ccccccCcccCCCCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEE
Q psy16559 74 GACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKV 153 (207)
Q Consensus 74 GaCR~GdrCSr~H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V 153 (207)
|+=-+|.-=.+....+..|.+|.|.|+=.. .+ ++ +||.+.|++||.|.+|.|
T Consensus 7 ~~~~~~~~~k~~~~~~~p~~~l~V~NLp~~-~~----------------te-----------~~L~~lF~~fG~V~~v~i 58 (112)
T 1x4f_A 7 GKKPEGKPDQKFDQKQELGRVIHLSNLPHS-GY----------------SD-----------SAVLKLAEPYGKIKNYIL 58 (112)
T ss_dssp CCCSCCCCCCCCCCSSCCCCEEEEESCCCS-SC----------------CS-----------HHHHTTTTTTSCCSEEEE
T ss_pred CccccCChhhhccccCCCCCEEEEeCCCCc-cC----------------CH-----------HHHHHHHHhcCCEEEEEE
Confidence 444455544555666777999999998331 01 12 577788899999999999
Q ss_pred ccCCCCCcceeEEEEeCChHHHHHHHHHhC--CceeCCeEEEEEecCc
Q psy16559 154 CCNKSPHLRGNVYVSYSNEREALRAFYALT--GRFYGGKQIRGQFCNV 199 (207)
Q Consensus 154 ~~n~~~h~~G~VyVkF~~~e~A~~Ai~~Ln--GR~f~GR~I~ae~~~v 199 (207)
.. .+|++||+|.+.++|.+|+..|| +..++||+|.++|+.-
T Consensus 59 ~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 59 MR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp ET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred ec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 64 37999999999999999999986 4679999999999753
No 89
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.21 E-value=6.4e-11 Score=91.87 Aligned_cols=62 Identities=23% Similarity=0.338 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCC--eEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGG--KQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~G--R~I~ae~~ 197 (207)
+||+..|++||.|..+.|..+. ....+|.+||+|.+.++|.+|+..|||+.++| ++|.+.|+
T Consensus 104 ~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 104 DQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 5778888999999999998764 56779999999999999999999999999988 99999874
No 90
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.21 E-value=7.9e-11 Score=90.83 Aligned_cols=64 Identities=20% Similarity=0.347 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||++-|++||.|.++.|..+. +...+|++||+|.+.++|.+|+..|||..++|++|.+.++..
T Consensus 17 ~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 17 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp HHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5677788999999999998764 567889999999999999999999999999999999999754
No 91
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.21 E-value=9.5e-11 Score=92.21 Aligned_cols=64 Identities=16% Similarity=0.251 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||..-|++||.|..|.|..+. +.+.+|++||+|.+.++|.+|+..|||..++|++|.++++.-
T Consensus 54 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 54 EQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 5677888999999999997764 467899999999999999999999999999999999999753
No 92
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.21 E-value=3.4e-11 Score=89.37 Aligned_cols=66 Identities=12% Similarity=0.194 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCe-EEEEEecC-cCcc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGK-QIRGQFCN-VPLW 202 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR-~I~ae~~~-v~~f 202 (207)
++|..-|++||.|..+.|.. .++..+|++||.|.+.++|.+|+..|||..++|| +|.+.++. ...|
T Consensus 36 ~~l~~~F~~~G~v~~v~i~~-~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~~k~ 103 (105)
T 2nlw_A 36 NVIHKIFSKFGKITNDFYPE-EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFDKY 103 (105)
T ss_dssp HHHHHHHGGGSCEEEEECCC-BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCCCCC
T ss_pred HHHHHHHhcCCCEEEEEeeC-CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchHhhh
Confidence 68888899999999999984 4457899999999999999999999999999999 99999974 3444
No 93
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.21 E-value=2.5e-11 Score=89.14 Aligned_cols=62 Identities=18% Similarity=0.343 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCeeEEEEccCC--CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK--SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~--~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||+.-|++|| |..|.|..+. +.+.+|++||+|.+.++|.+|+ .|||..++||.|.++++.-
T Consensus 34 ~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 34 ESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp SHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCC
T ss_pred HHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccC
Confidence 46777889999 9999998764 5678999999999999999999 9999999999999998753
No 94
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.21 E-value=2.7e-11 Score=87.55 Aligned_cols=83 Identities=19% Similarity=0.349 Sum_probs=66.2
Q ss_pred CCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEe
Q psy16559 90 SVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSY 169 (207)
Q Consensus 90 ~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF 169 (207)
..+.+|.|.|+=. . +++++|. +.+..-|++||.|..|.|..+ ...+|++||+|
T Consensus 6 ~~~~~l~V~nLp~--~----------------~~~~~l~-------~~l~~~f~~~G~i~~v~i~~~--~~~~g~afV~f 58 (97)
T 1nu4_A 6 RPNHTIYINNLNE--K----------------IKKDELK-------KSLHAIFSRFGQILDILVSRS--LKMRGQAFVIF 58 (97)
T ss_dssp CCCSEEEEESCCT--T----------------SCHHHHH-------HHHHHHHGGGSCEEEEECCHH--HHHTTCEEEEE
T ss_pred CCCCEEEEeCCCC--C----------------CCHHHHH-------HHHHHHHHhCCCEEEEEEEcC--CCcCcEEEEEe
Confidence 4578999999732 2 1333333 344578899999999999742 35679999999
Q ss_pred CChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 170 SNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 170 ~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
.+.++|.+|+..|||..++|++|.+.++.-
T Consensus 59 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (97)
T 1nu4_A 59 KEVSSATNALRSMQGFPFYDKPMRIQYAKT 88 (97)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECSS
T ss_pred CCHHHHHHHHHHhCCCEECCcEEEEEEccC
Confidence 999999999999999999999999999754
No 95
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.21 E-value=5.3e-11 Score=86.81 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||+.-|++||.|..|.|..+ +|++||+|.+.++|.+|+..|||..++|++|.+.++.-
T Consensus 30 ~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 30 EEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp HHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred HHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 567778899999999999754 79999999999999999999999999999999999754
No 96
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.21 E-value=3.5e-11 Score=86.65 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCeeEEEEcc-CCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCC-NKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~-n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||+.-|++||.|..+.+.. +.....+|++||+|.+.++|.+|+..|||..++||+|.++++.
T Consensus 30 ~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 30 DEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp HHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 56777789999998666643 3445789999999999999999999999999999999999864
No 97
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.20 E-value=6.5e-11 Score=89.06 Aligned_cols=62 Identities=13% Similarity=0.158 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCc--eeCCeEEEEEecCcCcc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGR--FYGGKQIRGQFCNVPLW 202 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR--~f~GR~I~ae~~~v~~f 202 (207)
+||++.|++||.|..|.|..+ +|++||+|.+.++|.+|+..|||. .++||+|.++|+.-...
T Consensus 30 ~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 30 ADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp HHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred HHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 577788899999999998753 799999999999999999999765 59999999999865443
No 98
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=6.4e-11 Score=84.96 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||+.-|++||.|..+.|. +|++||+|.+.++|.+|+..|||..++|++|.++++.-
T Consensus 23 ~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 23 QEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp HHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred HHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 5677778999999999996 58999999999999999999999999999999999754
No 99
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.1e-10 Score=87.45 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHh--CCceeCCeEEEEEecCcCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYAL--TGRFYGGKQIRGQFCNVPL 201 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~L--nGR~f~GR~I~ae~~~v~~ 201 (207)
+||..-|++||.|.+|.|... +|++||+|.+.++|.+|+..| +|..+.||+|.+.|+.-..
T Consensus 30 ~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 30 TEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp HHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSS
T ss_pred HHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCccc
Confidence 567778899999999999763 799999999999999999987 5788999999999986543
No 100
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=2.5e-11 Score=92.11 Aligned_cols=92 Identities=12% Similarity=0.088 Sum_probs=72.8
Q ss_pred ccCCCCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCc
Q psy16559 82 CSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHL 161 (207)
Q Consensus 82 CSr~H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~ 161 (207)
+|+.+..+..+.+|.|.||=. . .++ +||.+-|+.| .|.+|.|..+...+.
T Consensus 6 ~~~~~~~~~~~~~v~V~nLp~--~----------------~te-----------~dl~~~F~~~-~v~~v~i~~d~~g~~ 55 (109)
T 2dnn_A 6 SGKPLPINPDDLYVSVHGMPF--S----------------AME-----------NDVRDFFHGL-RVDAVHLLKDHVGRN 55 (109)
T ss_dssp CCCCCCCCHHHHEEEEECCCS--S----------------CCH-----------HHHHHHTTTS-CCCEEEECCCTTCCC
T ss_pred CCCCCCCCCCCCEEEEeCCCC--C----------------CCH-----------HHHHHHhccC-CeeEEEEEECCCCCC
Confidence 344455555577999999832 1 122 5677777889 899999987766788
Q ss_pred ceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCcccc
Q psy16559 162 RGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSK 204 (207)
Q Consensus 162 ~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f~e 204 (207)
+|++||+|.+.++|.+|+ .|||..++||.|.+..+...+|..
T Consensus 56 ~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~~~~~ 97 (109)
T 2dnn_A 56 NGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATERQWVA 97 (109)
T ss_dssp CSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHHHHHH
T ss_pred CeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCccchhh
Confidence 999999999999999999 799999999999998877666643
No 101
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=6.4e-11 Score=88.44 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCeeEEEEccCCC-CCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKS-PHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~-~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||..-|++||.|..|.|..+.. ...+|++||+|.+.++|.+|+ .|||..++|+.|.+.++.
T Consensus 40 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 40 RDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred HHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 56777789999999999976543 577999999999999999999 999999999999999864
No 102
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.20 E-value=6.2e-11 Score=96.62 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPL 201 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~ 201 (207)
+||.+-|++||.|..|.|..+.+.+.+|++||+|.+.++|.+|+..|||..++|++|.++|+....
T Consensus 103 ~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 103 ADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp HHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGG
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 567777889999999999887667789999999999999999999999999999999999986644
No 103
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=9.5e-11 Score=84.04 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=63.6
Q ss_pred CCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEEE
Q psy16559 88 KPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYV 167 (207)
Q Consensus 88 ~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyV 167 (207)
.+..+.+|.|.|+=. .+ ++ +||..-|++||.|..+.|. +|++||
T Consensus 5 ~~~~~~~l~V~nlp~--~~----------------t~-----------~~l~~~F~~~G~v~~~~~~-------~~~afV 48 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSA--AC----------------TS-----------QELRSLFERRGRVIECDVV-------KDYAFV 48 (90)
T ss_dssp SSCCSCCEEEESCCT--TC----------------CH-----------HHHHHHHHHHSCEEEEEEC-------SSCEEE
T ss_pred CCCCCCEEEEeCCCC--CC----------------CH-----------HHHHHHHHcCCCEEEEEEE-------CCEEEE
Confidence 455678999998832 21 22 5677778999999999996 469999
Q ss_pred EeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 168 SYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 168 kF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+|.+.++|.+|+..|||..++|++|.++++..
T Consensus 49 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 49 HMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp EESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred EECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 99999999999999999999999999999754
No 104
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.19 E-value=9.2e-11 Score=93.48 Aligned_cols=64 Identities=23% Similarity=0.326 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||...|++||.|..+.|..+. +...+|++||+|.+.++|.+|+..|||..++||+|.+.++..
T Consensus 129 ~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 129 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp HHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5788888999999999998764 567899999999999999999999999999999999999743
No 105
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.19 E-value=4.4e-11 Score=90.17 Aligned_cols=79 Identities=11% Similarity=0.161 Sum_probs=64.5
Q ss_pred CCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEE
Q psy16559 87 IKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVY 166 (207)
Q Consensus 87 ~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~Vy 166 (207)
.++..|++|.|.|+=.. .+ ++ +||..-|+.||.|.+|.|..+ +|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~-~~----------------te-----------~dL~~lF~~fG~V~~v~i~~~-----kg~aF 56 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRG-KN----------------LR-----------YQLLQLVEPFGVISNHLILNK-----INEAF 56 (102)
T ss_dssp CCCCCCCEEEEESCCCS-SS----------------HH-----------HHHHTTTGGGSCEEEEEECSS-----SSCEE
T ss_pred CCCCCCCEEEEeCCCCC-cC----------------CH-----------HHHHHHHHhcCCEEEEEEEcC-----CCEEE
Confidence 34557899999998320 11 22 577778899999999999753 58999
Q ss_pred EEeCChHHHHHHHHHhCCc--eeCCeEEEEEecC
Q psy16559 167 VSYSNEREALRAFYALTGR--FYGGKQIRGQFCN 198 (207)
Q Consensus 167 VkF~~~e~A~~Ai~~LnGR--~f~GR~I~ae~~~ 198 (207)
|+|.+.++|.+|+..|||. .++||+|.++|+.
T Consensus 57 Vef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 57 IEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp EEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred EEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 9999999999999999974 5999999999986
No 106
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.19 E-value=7.5e-11 Score=95.24 Aligned_cols=64 Identities=14% Similarity=0.270 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||++.|++||.|..+.|..+ .+...+|++||+|.+.++|.+|+..|||+.|+||+|.+.|+.-
T Consensus 140 ~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 140 DDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp HHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred HHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 578888899999999999876 3457799999999999999999999999999999999999643
No 107
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.18 E-value=1.3e-10 Score=92.61 Aligned_cols=63 Identities=22% Similarity=0.424 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||..-|++||.|..|.|..+ .+.+.+|++||.|.+.++|.+|+..|||..++|++|.+.|+.
T Consensus 87 ~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 87 DEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred HHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 567778899999999999876 456789999999999999999999999999999999999974
No 108
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.18 E-value=1.7e-10 Score=84.81 Aligned_cols=57 Identities=14% Similarity=0.334 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||.+-|++||.|..|.|. +|++||+|.+.++|.+|+..|||..++|++|.+.++..
T Consensus 26 ~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 26 EILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp HHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred HHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 5677777899999999986 57999999999999999999999999999999999754
No 109
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=1.1e-10 Score=85.14 Aligned_cols=80 Identities=23% Similarity=0.260 Sum_probs=63.7
Q ss_pred CCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEEE
Q psy16559 88 KPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYV 167 (207)
Q Consensus 88 ~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyV 167 (207)
.+..+.+|.|.||=. . +++ +||+.-|++||.| .|..+.....+|++||
T Consensus 11 ~~~~~~~l~V~nLp~--~----------------~t~-----------~~l~~~F~~~g~v---~~~~~~~g~~~g~afV 58 (101)
T 2fc9_A 11 WSGESKTLVLSNLSY--S----------------ATE-----------ETLQEVFEKATFI---KVPQNQNGKSKGYAFI 58 (101)
T ss_dssp CSCCCSEEEEESCCT--T----------------CCH-----------HHHHHHCSSCSEE---ECCBCSSSCBCSEEEE
T ss_pred CCCCCCEEEEeCCCC--C----------------CCH-----------HHHHHHHHhCCEE---EEEECCCCCEeeEEEE
Confidence 445688999998832 2 133 4566667789987 4555555678999999
Q ss_pred EeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 168 SYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 168 kF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+|.+.++|.+|+..|||..++|++|.++++.-
T Consensus 59 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 59 EFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp ECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred EECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 99999999999999999999999999999754
No 110
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.18 E-value=2.3e-10 Score=81.25 Aligned_cols=61 Identities=11% Similarity=0.216 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
+||..-|++||.|..+.|..+. +...+|++||+|.+.++|.+|+.. +|..++||+|.+.++
T Consensus 26 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 26 KDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKKA 87 (87)
T ss_dssp HHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEEC
T ss_pred HHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEeC
Confidence 5677778999999999997663 467899999999999999999965 888999999999763
No 111
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=1.2e-11 Score=87.67 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEe
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQF 196 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~ 196 (207)
+||..-|++||.|..+.|..+ .+...+|++||.|.+.++|.+|+..|||..++||.|.+.+
T Consensus 20 ~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 20 QDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp HHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 466777789999999999766 3467799999999999999999999999999999987654
No 112
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.17 E-value=3.4e-10 Score=104.31 Aligned_cols=64 Identities=17% Similarity=0.361 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
++|...|++||.|..|.|+.+ .+.+..|++||.|.+.++|.+||..|||.+|+|++|.|+|+..
T Consensus 117 ~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 117 SKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred HHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 567778899999999999765 4567899999999999999999999999999999999999753
No 113
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.2e-10 Score=89.84 Aligned_cols=63 Identities=24% Similarity=0.384 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCcee-----CCeEEEEEecCcCccc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFY-----GGKQIRGQFCNVPLWS 203 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f-----~GR~I~ae~~~v~~f~ 203 (207)
+|+++.|++||.|..|.|... +|++||+|.+.++|.+|+..|||+.+ .|++|.+.|+.-..|.
T Consensus 42 ~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 42 NQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWS 109 (114)
T ss_dssp HHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCCS
T ss_pred HHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCccc
Confidence 578888999999999998642 79999999999999999999999998 7999999998655553
No 114
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.17 E-value=1.4e-10 Score=90.72 Aligned_cols=60 Identities=23% Similarity=0.338 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||+.-|++||.|..|.|..+ .+|++||+|.+.++|.+|+..|||..++|++|.++++.-
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 467777789999999999875 489999999999999999999999999999999999753
No 115
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.7e-10 Score=85.98 Aligned_cols=63 Identities=16% Similarity=0.277 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCcee--------CCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFY--------GGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f--------~GR~I~ae~~~ 198 (207)
+||+.-|++||.|..+.|..+.....+|++||.|.+.++|.+|+..|||..+ .|++|.+.|+.
T Consensus 40 ~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 40 QELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp HHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred HHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 5677778899999999998876677899999999999999999999999999 68889999875
No 116
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=2.5e-10 Score=82.13 Aligned_cols=76 Identities=16% Similarity=0.297 Sum_probs=64.0
Q ss_pred CCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEEE
Q psy16559 88 KPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYV 167 (207)
Q Consensus 88 ~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyV 167 (207)
.+..+.+|.|.|+= +.+ ++ +||..-|++||.|..+.|. +|++||
T Consensus 6 ~~~~~~~l~V~nLp--~~~----------------t~-----------~~l~~~F~~~G~v~~v~~~-------~~~afV 49 (92)
T 2dgt_A 6 SGKASTKLHVGNIS--PTC----------------TN-----------QELRAKFEEYGPVIECDIV-------KDYAFV 49 (92)
T ss_dssp CCCSSEEEEEESCC--SSC----------------CH-----------HHHHHHHHTTSCCCEEEEC-------SSEEEE
T ss_pred CCCCCCEEEEeCCC--CCC----------------CH-----------HHHHHHHHhcCCeEEEEEE-------CCEEEE
Confidence 45578899999982 221 22 5677788999999999996 469999
Q ss_pred EeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 168 SYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 168 kF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
.|.+.++|.+|+..|||..++|++|.++++..
T Consensus 50 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 50 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp EESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred EECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 99999999999999999999999999999754
No 117
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.2e-10 Score=90.41 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCC--ceeCCeEEEEEecCcCcc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTG--RFYGGKQIRGQFCNVPLW 202 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnG--R~f~GR~I~ae~~~v~~f 202 (207)
+||++-|++||.|.+|.|..+ +|++||+|.+.++|.+|++.||| ..++||+|.+.|+.-...
T Consensus 46 ~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~ 109 (119)
T 2ad9_A 46 GEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 109 (119)
T ss_dssp HHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSC
T ss_pred HHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCC
Confidence 577788899999999999763 79999999999999999999984 689999999999865443
No 118
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.16 E-value=1.1e-10 Score=90.55 Aligned_cols=64 Identities=16% Similarity=0.346 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||+.-|++||.|.++.|..+. +...+|++||+|.+.++|.+|+..|||..++|++|.+.++..
T Consensus 18 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 18 RELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp HHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 5677788999999999997653 456789999999999999999999999999999999999753
No 119
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.16 E-value=1.4e-10 Score=89.28 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||.+-|++||.|.+|.|..+.....+|++||+|.+.++|.+|+..|||..+.|++|.+.++.
T Consensus 15 ~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~ 77 (166)
T 3md3_A 15 DILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAF 77 (166)
T ss_dssp HHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcC
Confidence 567777899999999999877666789999999999999999999999999999999999874
No 120
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=2e-11 Score=92.93 Aligned_cols=66 Identities=15% Similarity=0.211 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCeeE-EEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCcc
Q psy16559 136 DDVLPELRSLGQVTQ-FKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLW 202 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~-v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f 202 (207)
+||..-|++||.|.. +.|.++.+...+|++||+|.+.++|.+|+. |||..++||.|.+.++...++
T Consensus 40 ~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~ 106 (124)
T 1wel_A 40 KHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKKGM 106 (124)
T ss_dssp HHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHHHH
T ss_pred HHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHHHH
Confidence 567777889999987 555666667889999999999999999999 999999999999999865544
No 121
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.15 E-value=1e-10 Score=84.82 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCeeEEEEc-cCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVC-CNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~-~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||+.-|++||.|..+.+. +......+|++||+|.+.++|.+|+..|||..++||+|.++++.
T Consensus 30 ~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 30 DEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp HHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred HHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 5677778999999866554 33455789999999999999999999999999999999999974
No 122
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.15 E-value=1.1e-10 Score=85.22 Aligned_cols=58 Identities=21% Similarity=0.448 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||+.-|++||.|.++.|.. .+|++||+|.+.++|.+|+..|||..++|+.|.+.++.
T Consensus 42 ~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 42 ADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp HHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred HHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 56777889999999999973 47999999999999999999999999999999998763
No 123
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.4e-10 Score=82.55 Aligned_cols=62 Identities=19% Similarity=0.174 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCeeEE-EEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 136 DDVLPELRSLGQVTQF-KVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v-~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
+||+.-|++||.|..+ .|..+. ..|.+||.|.+.++|.+|+..|||..++||+|.+.++...
T Consensus 30 ~~l~~~F~~~G~v~~~~~i~~~~---~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 30 EVLDSLLVQYGVVESCEQVNTDS---ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHHHHHHHHHSCEEEEEEECCSS---SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred HHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 5677778899999999 476542 3466999999999999999999999999999999998654
No 124
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.15 E-value=2.2e-10 Score=85.16 Aligned_cols=56 Identities=30% Similarity=0.463 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||+.-|++||.|..|.| .+|++||+|.+.++|.+|+..|||..++|++|.++++.
T Consensus 43 ~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 43 SDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp HHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred HHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 567778899999999999 37999999999999999999999999999999999975
No 125
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.15 E-value=1.8e-10 Score=87.82 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=53.2
Q ss_pred HHHHHHHHhcC-CeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLG-QVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG-~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+|+.+-|++|| .|..+.|... ..+|++||.|.+.++|.+|+..|||..++||+|.++++.
T Consensus 43 ~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 43 QDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp HHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred HHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 56777778999 8999999642 368999999999999999999999999999999999874
No 126
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.14 E-value=1.6e-10 Score=89.92 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeC---CeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYG---GKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~---GR~I~ae~~~ 198 (207)
+||++.|++||.|..+.|..+.....+|++||+|.+.++|.+|++.|||+.+. ||+|.+.|+.
T Consensus 110 ~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 110 NDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 57778889999999999988776788999999999999999999999998665 4999999863
No 127
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.14 E-value=1.7e-10 Score=88.93 Aligned_cols=62 Identities=18% Similarity=0.317 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeE--EEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQ--IRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~--I~ae~~ 197 (207)
+||+..|++||.|..+.|..+. +...+|++||+|.+.++|.+|++.|||+.++||. |.+.|+
T Consensus 103 ~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 103 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 5788888999999999997653 4567999999999999999999999999999975 887764
No 128
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=1.3e-10 Score=87.35 Aligned_cols=84 Identities=17% Similarity=0.129 Sum_probs=68.9
Q ss_pred CCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCe-eEEEEccCCCCCcceeE
Q psy16559 87 IKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQV-TQFKVCCNKSPHLRGNV 165 (207)
Q Consensus 87 ~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V-~~v~V~~n~~~h~~G~V 165 (207)
..|..+.+|.|.||=. . +++ +||.+-|++||.| ..|.|..+.+...+|++
T Consensus 10 ~~~~~~~~l~V~nLp~--~----------------~t~-----------~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~a 60 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPF--S----------------ITK-----------MDVLQFLEGIPVDENAVHVLVDNNGQGLGQA 60 (114)
T ss_dssp SCCSCCCEEEEESCCT--T----------------SCH-----------HHHHHHTTTSCCCSTTEEECCCTTSSCSSCE
T ss_pred CCCCCccEEEEeCcCC--c----------------CCH-----------HHHHHHHHhCCCcCCeEEEEECCCCCcceEE
Confidence 3566788999999822 2 123 4677777899999 88998877667789999
Q ss_pred EEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 166 YVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 166 yVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
||+|.+.++|.+|+.. ||..++||.|.+.++...
T Consensus 61 fV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 61 LVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp EEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHH
T ss_pred EEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHH
Confidence 9999999999999998 999999999999987543
No 129
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=1.9e-10 Score=85.15 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCCeeE-EEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCcccc
Q psy16559 136 DDVLPELRSLGQVTQ-FKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSK 204 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~-v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f~e 204 (207)
+||++-|++||.|.. |.|..+.+...+|++||+|.+.++|.+|+.. ||..++||.|.+..+....+..
T Consensus 30 ~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~~~~ 98 (104)
T 1wg5_A 30 EEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAEVRT 98 (104)
T ss_dssp HHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTTSCC
T ss_pred HHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHHHHH
Confidence 577778899999997 8887776678899999999999999999998 9999999999999987666543
No 130
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.14 E-value=1.1e-10 Score=88.77 Aligned_cols=65 Identities=15% Similarity=0.109 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCC---eeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCc
Q psy16559 136 DDVLPELRSLGQ---VTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPL 201 (207)
Q Consensus 136 eDV~~Ec~kyG~---V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~ 201 (207)
+||++-|++||. |..|.|..+...+.+|++||+|.+.++|.+|+. |||..++||.|.+.++....
T Consensus 32 ~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~ 99 (118)
T 2db1_A 32 EDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRTE 99 (118)
T ss_dssp HHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHHH
T ss_pred HHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHHH
Confidence 567777888999 899999877667889999999999999999999 99999999999999875443
No 131
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.14 E-value=2.4e-10 Score=91.52 Aligned_cols=64 Identities=19% Similarity=0.334 Sum_probs=57.2
Q ss_pred HHHHHHHHhcC--CeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLG--QVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG--~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||.+-|++|| .|..|.|..+ .+...+|++||.|.+.++|.+|+..|||..++||+|.+.++.-
T Consensus 70 ~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 70 QQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp HHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred HHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence 56777889999 9999999765 4567899999999999999999999999999999999998753
No 132
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.14 E-value=3.2e-10 Score=84.25 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCC-----eEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGG-----KQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~G-----R~I~ae~~~v 199 (207)
+||.+-|++||.|..+.|..+ |++||+|.+.++|.+|++.|||..++| ++|.+++..-
T Consensus 30 ~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 30 QDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp HHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred HHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 567777899999999999764 999999999999999999999999999 9999999643
No 133
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=4.5e-10 Score=81.80 Aligned_cols=57 Identities=26% Similarity=0.464 Sum_probs=51.5
Q ss_pred HHHHHHHHhc--CCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSL--GQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~ky--G~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||+.-|++| |.|..+.+. +|++||.|.+.++|.+|+..|||..++|++|.++++.-
T Consensus 30 ~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 30 EMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp HHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred HHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 5677778899 999999875 58999999999999999999999999999999999754
No 134
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.3e-10 Score=86.57 Aligned_cols=82 Identities=21% Similarity=0.318 Sum_probs=64.4
Q ss_pred CCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCe----eEEEEccCCCCCc
Q psy16559 86 HIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQV----TQFKVCCNKSPHL 161 (207)
Q Consensus 86 H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V----~~v~V~~n~~~h~ 161 (207)
...+..+.+|.|.|+=. . +++ +||..-|++||.| ..+.+. ....
T Consensus 19 ~~~~~~~~~l~V~nLp~--~----------------~t~-----------~~l~~~f~~~G~v~~~~~~~~~~---~g~~ 66 (115)
T 2cpx_A 19 YNPGEPNKVLYLKNLSP--R----------------VTE-----------RDLVSLFARFQEKKGPPIQFRMM---TGRM 66 (115)
T ss_dssp CCCCSCCSEEEEECCCT--T----------------CCH-----------HHHHHHTHHHHHSSSSCCEEEEE---CSSS
T ss_pred cCCCCCCCEEEEeCCCC--C----------------CCH-----------HHHHHHHHHhCCccceEEEEEcC---CCcc
Confidence 33445678999999822 2 122 5667777889998 455544 4567
Q ss_pred ceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 162 RGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 162 ~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+|++||.|.+.++|.+|+..|||..++|++|.++|+.-
T Consensus 67 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 104 (115)
T 2cpx_A 67 RGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN 104 (115)
T ss_dssp CSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccC
Confidence 89999999999999999999999999999999999754
No 135
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.12 E-value=6.7e-11 Score=92.11 Aligned_cols=64 Identities=22% Similarity=0.411 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||.+-|++||.|..|.|..+. +...+|++||+|.+.++|.+|+..|||..++|++|.++++..
T Consensus 62 ~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 62 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp HHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred HHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5777888999999999998653 467899999999999999999999999999999999999754
No 136
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.12 E-value=5e-11 Score=85.83 Aligned_cols=63 Identities=21% Similarity=0.236 Sum_probs=54.8
Q ss_pred HHHHHHHHhcC--CeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLG--QVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG--~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||++-|++|| .|.++.|..+ .+...+|++||.|.+.++|.+|++.|||..++||+|.+.++.
T Consensus 16 ~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 16 EDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp HHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred HHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 56777789999 9999999765 356789999999999999999999999999999999998864
No 137
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.12 E-value=6.9e-11 Score=81.73 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
+||..-|++||.|..+.|..+. +...+|++||+|.+.++|.+|+. |||..++|++|.+.++
T Consensus 14 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 14 EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp HHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred HHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5677788999999999998764 46789999999999999999998 9999999999999763
No 138
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=2.4e-10 Score=83.96 Aligned_cols=63 Identities=13% Similarity=0.237 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||+.-|++||.|..|.|..+ .+...+|++||+|.+.++|.+|+.. ||..++|+.|.+.++..
T Consensus 31 ~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~ 94 (105)
T 2dh8_A 31 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTP 94 (105)
T ss_dssp HHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCC
T ss_pred HHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccC
Confidence 567777899999999999876 3467899999999999999999999 99999999999998743
No 139
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.11 E-value=2.4e-10 Score=97.28 Aligned_cols=62 Identities=11% Similarity=0.308 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCCeeEEEEccCCC--CCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKS--PHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~--~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||+..|++||.|..|.|..+.. ...+|++||+|.+.++|.+|+ .|||++++||+|.+.|+.
T Consensus 226 ~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~ 289 (292)
T 2ghp_A 226 NLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLAD 289 (292)
T ss_dssp HHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECC
T ss_pred HHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEec
Confidence 57888889999999999988765 788999999999999999999 999999999999999974
No 140
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.11 E-value=2e-10 Score=88.09 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPL 201 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~ 201 (207)
+||..-|++||.|.+|.|. ..+|++||.|.+.++|.+|+..|||..++|++|.+.++.-..
T Consensus 52 ~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 52 TLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp HHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred HHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 5777888999999999995 357999999999999999999999999999999999986543
No 141
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=2.6e-10 Score=84.16 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCC-eeEEEEc-cC-CCCCcceeEEEEeCChHHHHHHHHHhC--CceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQ-VTQFKVC-CN-KSPHLRGNVYVSYSNEREALRAFYALT--GRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~-V~~v~V~-~n-~~~h~~G~VyVkF~~~e~A~~Ai~~Ln--GR~f~GR~I~ae~~~v 199 (207)
+||.+.|++||. |..+.|. .+ .+...+|++||+|.+.++|.+|+..|| |..++|++|.+.++.-
T Consensus 23 ~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~ 91 (109)
T 2dis_A 23 EEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEP 91 (109)
T ss_dssp HHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCS
T ss_pred HHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCC
Confidence 577788899998 9999997 33 234779999999999999999999996 5899999999999753
No 142
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.11 E-value=1.2e-10 Score=84.69 Aligned_cols=56 Identities=13% Similarity=0.242 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||+.-|++||.|..+.|. +|++||+|.+.++|.+|+..|||..+.|++|.++++.
T Consensus 26 ~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 26 EDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp HHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred HHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 5777788999999999994 6999999999999999999999999999999999974
No 143
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.11 E-value=2.3e-10 Score=82.03 Aligned_cols=61 Identities=16% Similarity=0.160 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCcc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLW 202 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f 202 (207)
+||++-|++| .|..+.|. ..+|++||+|.+.++|.+|+..|||..++||+|.+++++...+
T Consensus 20 ~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 80 (88)
T 1wg1_A 20 QEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDAL 80 (88)
T ss_dssp HHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred HHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCce
Confidence 5677778899 99999984 5689999999999999999999999999999999999987654
No 144
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.11 E-value=3.3e-10 Score=95.97 Aligned_cols=65 Identities=23% Similarity=0.381 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
+||...|++||.|..+.|..+..++++|.+||+|.+.++|.+|+..|||+.|+||+|.+.|+...
T Consensus 200 ~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 264 (284)
T 3smz_A 200 DALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPG 264 (284)
T ss_dssp HHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred HHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCC
Confidence 57888889999999999988777788999999999999999999999999999999999998654
No 145
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1.4e-10 Score=86.32 Aligned_cols=84 Identities=10% Similarity=0.156 Sum_probs=67.8
Q ss_pred CCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeE
Q psy16559 86 HIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNV 165 (207)
Q Consensus 86 H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~V 165 (207)
+..|..+.+|.|.||=. . .++ +||++-|++||.| .|.|..+.+.+.+|++
T Consensus 9 ~~~~~~~~~l~V~nLp~--~----------------~te-----------~~l~~~F~~~G~~-~v~i~~d~~g~~~G~a 58 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPY--R----------------ATE-----------NDIYNFFSPLNPM-RVHIEIGPDGRVTGEA 58 (102)
T ss_dssp SCCCSSSCEEEEESCCT--T----------------CCH-----------HHHHHSSCSCCCS-EEEEEESSSSCEEEEE
T ss_pred CCCCCCCCEEEEeCCCC--C----------------CCH-----------HHHHHHHHHcCce-EEEEEECCCCCEeeEE
Confidence 45677889999999822 2 123 5667777899954 9998876677889999
Q ss_pred EEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 166 YVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 166 yVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
||+|.+.++|.+|+ .+||..++||.|.+..+...
T Consensus 59 fV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 59 DVEFATHEDAVAAM-AKDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp EEECSSSHHHHHHH-TTSSCCSSSSCCEEEEECCC
T ss_pred EEEECCHHHHHHHH-HhCCCeECCcEEEEEECCCC
Confidence 99999999999999 57999999999999886543
No 146
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.10 E-value=1.5e-10 Score=83.58 Aligned_cols=60 Identities=12% Similarity=0.249 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||..-|++||.|..+ ......+|++||+|.+.++|.+|+..|||..++|++|.++++..
T Consensus 31 ~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 31 DELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp HHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred HHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 4666677889988776 23356799999999999999999999999999999999999743
No 147
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.10 E-value=1.6e-10 Score=91.07 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCC---eeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 136 DDVLPELRSLGQ---VTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~---V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
+||++-|++||. |..|.|..+.....+|++||+|.+.++|.+|++ |||..++||.|.+.++...
T Consensus 59 ~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 59 EDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp HHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHH
T ss_pred HHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChH
Confidence 577888899999 889999876557889999999999999999999 9999999999999987543
No 148
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.10 E-value=1.5e-10 Score=80.01 Aligned_cols=61 Identities=13% Similarity=0.200 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
+||+.-|++||.|.++.|..+. ++..+|++||.|.+.++|.+|+..|| ..++|++|.+.++
T Consensus 15 ~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 15 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp HHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred HHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5677788999999999998764 46789999999999999999999999 9999999999874
No 149
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.09 E-value=1.2e-10 Score=86.59 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=68.1
Q ss_pred CCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCC---eeEEEEccCCCCCcc
Q psy16559 86 HIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQ---VTQFKVCCNKSPHLR 162 (207)
Q Consensus 86 H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~---V~~v~V~~n~~~h~~ 162 (207)
...+..+.+|.|.||=. .. ++ +||..-|+.||. |..|.|..+.....+
T Consensus 5 ~~~~~~~~~l~V~nLp~--~~----------------te-----------~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~ 55 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPW--SC----------------TM-----------EDVLNFFSDCRIRNGENGIHFLLNRDGKRR 55 (107)
T ss_dssp CCCCSSCCEEEEECCCS--SC----------------CS-----------HHHHHHTTTSCBTTTTTTEECCCCTTSTTC
T ss_pred cCCCCCccEEEEeCCCC--CC----------------CH-----------HHHHHHHHhcCCcCCcceEEEEECCCCCEe
Confidence 34455778899998832 11 22 466666778787 999999877667889
Q ss_pred eeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 163 GNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 163 G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
|++||.|.+.++|.+|+. |||..++||.|.+.++...
T Consensus 56 G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 56 GDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNE 92 (107)
T ss_dssp SEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHH
T ss_pred eEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHH
Confidence 999999999999999999 9999999999999887543
No 150
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.09 E-value=3.6e-10 Score=93.68 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
++++.-|++||.|.+|+|..+ .+|++||+|.+.++|.+|++.|||..+.||+|.+.++.
T Consensus 20 ~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 20 DRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp HHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred HHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 467778899999999999764 37999999999999999999999999999999999974
No 151
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.09 E-value=4.2e-10 Score=84.20 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||+.-|++||.|..|.|..+. +...+|++||+|.+.++|.+|+..+ |..++||.|.+.++..
T Consensus 40 ~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~ 103 (109)
T 2rs2_A 40 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFP 103 (109)
T ss_dssp HHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCC
T ss_pred HHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccC
Confidence 5677788999999999998764 4678999999999999999999987 5999999999999743
No 152
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=2.2e-10 Score=82.47 Aligned_cols=58 Identities=21% Similarity=0.269 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCC-eeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCC-ceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQ-VTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTG-RFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~-V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnG-R~f~GR~I~ae~~~v 199 (207)
+||+.-|++||. |..+.|. .+|++||+|.+.++|.+|+..||| ..++|++|.++++.-
T Consensus 23 ~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 23 DDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp HHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred HHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 567777899999 6666663 379999999999999999999999 999999999999754
No 153
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.08 E-value=3.6e-10 Score=85.38 Aligned_cols=63 Identities=19% Similarity=0.400 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||.+-|++||.|.+|.|..+ .+...+|++||+|.+.++|.+|+ .|||..|+|+.|.++++..
T Consensus 51 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 51 QDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred HHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 567777789999999999765 45678999999999999999999 8999999999999999753
No 154
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.07 E-value=1.2e-10 Score=89.58 Aligned_cols=63 Identities=24% Similarity=0.316 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCeeE--EEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCc----eeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQ--FKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGR----FYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~--v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR----~f~GR~I~ae~~~v 199 (207)
+||++.|++||.|.. |.|..+. +...+|++||+|.+. +|.+|+..|||. .++||+|.+.+..-
T Consensus 38 ~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 38 DSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKG 107 (131)
T ss_dssp HHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred HHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCC
Confidence 577778899999966 8888765 567899999999999 999999999999 99999999998744
No 155
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=3.8e-10 Score=84.44 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||+.-|++||.|..|.|..+ .+...+|++||.|.+.++|.+|+.. ||..++|+.|.+.++..
T Consensus 42 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 42 ESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred HHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 567777899999999999876 3467799999999999999999999 99999999999999743
No 156
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.06 E-value=9.3e-11 Score=83.78 Aligned_cols=65 Identities=20% Similarity=0.259 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPL 201 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~ 201 (207)
+||.+-|++||.|.++.|..+. +...+|++||.|.+.+ |.+|+..|||..++|++|.++++....
T Consensus 16 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 16 EQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp HHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred HHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 4666677889999999998764 3677999999999999 999999999999999999999986543
No 157
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.06 E-value=7.6e-10 Score=87.23 Aligned_cols=62 Identities=16% Similarity=0.166 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCccee-EEEEeCChHHHHHHHHHhCCceeCC--eEEEEEecCcCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGN-VYVSYSNEREALRAFYALTGRFYGG--KQIRGQFCNVPL 201 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~-VyVkF~~~e~A~~Ai~~LnGR~f~G--R~I~ae~~~v~~ 201 (207)
+++..-|++||.|.+|+|... .+|+ +||+|.+.++|.+|++.|||+-+.| +.|+++|+...+
T Consensus 43 ~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 43 DVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp HHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred HHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 456677899999999999763 2577 9999999999999999999999988 999999987654
No 158
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.06 E-value=4.9e-10 Score=87.94 Aligned_cols=59 Identities=12% Similarity=0.264 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||+..|++||.|..+ ......+|++||+|.+.++|.+|+..|||+.++||+|.+.|+.
T Consensus 114 ~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 114 DELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp HHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred HHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 5677777889998776 3345679999999999999999999999999999999999975
No 159
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.05 E-value=3.7e-11 Score=87.78 Aligned_cols=63 Identities=17% Similarity=0.131 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||..-|++||.|....+.+......+|++||+|.+.++|.+|++ |||..++|++|.+.++.-
T Consensus 32 ~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 32 AELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred HHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 466677788888877333333335678999999999999999999 999999999999999753
No 160
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=2e-09 Score=78.66 Aligned_cols=62 Identities=15% Similarity=0.257 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||..-|++||.|..|.|..+. +...+|++||+|.+.++|.+|+. +|..++|++|.+.++..
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 30 QDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp HHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCT
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCC
Confidence 5677778999999999997763 46789999999999999999999 58899999999999753
No 161
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.05 E-value=3.6e-10 Score=87.70 Aligned_cols=62 Identities=11% Similarity=0.125 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||.+.|++||.|..+.|..+ .+...+|++||+|.+.++|.+|++ |||..++||+|.+.++.
T Consensus 102 ~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 102 KEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred HHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 567778899999999999866 356789999999999999999998 89999999999999874
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.05 E-value=5.9e-10 Score=91.68 Aligned_cols=62 Identities=16% Similarity=0.357 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||++-|++||.|..+.|..+.. ..+|++||+|.+.++|.+|++.|||..++||+|.+.++.
T Consensus 118 ~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 118 KALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp HHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 56777889999999999976543 468999999999999999999999999999999999864
No 163
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.04 E-value=2.2e-10 Score=83.65 Aligned_cols=60 Identities=18% Similarity=0.329 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||..-|++||.|..+.|..+ .+|++||+|.+.++|.+|+..|||..++|++|.++++.-
T Consensus 15 ~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 15 GELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp HHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred HHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 567778899999999999876 589999999999999999999999999999999999754
No 164
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=7.6e-10 Score=83.42 Aligned_cols=57 Identities=16% Similarity=0.099 Sum_probs=51.2
Q ss_pred HHHHHHHHHhc-CCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 135 YDDVLPELRSL-GQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 135 yeDV~~Ec~ky-G~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
..++..-|++| |+|.+|. .|.+||.|.+.++|.+|++.|||..+.||+|++.|++-.
T Consensus 27 k~~L~~lF~~yGG~Vl~Vt---------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 27 SNRLRRLSDNCGGKVLSIT---------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp HHHHHHHHHTTTCCEEECC---------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCS
T ss_pred HHHHHHHHHHcCCeeEEEe---------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCC
Confidence 36888899999 5999982 299999999999999999999999999999999998653
No 165
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.04 E-value=3.2e-10 Score=87.93 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCCeeEE--------EEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQF--------KVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v--------~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||..-|++||.|..+ .+.. +.+.+|++||.|.+.++|.+|+..|||..++|++|.+.|+.-
T Consensus 60 ~~L~~~F~~~G~i~~~~~~~~~di~~~~--~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 129 (143)
T 3egn_A 60 KDLKYIFGRYVDFSSETQRIMFDIRLMK--EGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 129 (143)
T ss_dssp HHHHHHHGGGCCTTCHHHHHHCEEEEEE--ETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCC
T ss_pred HHHHHHHHHhCCcccccccceeeEEecc--CCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 5677788999998763 3332 356799999999999999999999999999999999999743
No 166
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.03 E-value=1.2e-09 Score=92.43 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeC-CeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYG-GKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~-GR~I~ae~~~ 198 (207)
+||++.|++||.|..|.|..+. +|++||+|.+.++|.+|+..|||+.++ |++|.++|+.
T Consensus 222 ~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 222 LMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 5777888999999999998543 599999999999999999999999999 9999999863
No 167
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.03 E-value=7.3e-10 Score=88.98 Aligned_cols=59 Identities=24% Similarity=0.329 Sum_probs=53.6
Q ss_pred HHHHHHHHhcC-CeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeC-CeEEEEEecC
Q psy16559 136 DDVLPELRSLG-QVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYG-GKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG-~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~-GR~I~ae~~~ 198 (207)
+||++.|++|| .|..+.|..+. +|.+||+|.+.++|.+|+..|||+.++ |++|.+.|+.
T Consensus 135 ~~l~~~f~~~G~~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 135 EDLKVLFSSNGGVVKGFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp HHHHHHHHHTTSCCCEEEESSTT----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred HHHHHHHHHcCCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 57888899999 99999996532 799999999999999999999999999 9999999974
No 168
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.01 E-value=1.4e-09 Score=88.96 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCC--eEEEEEecCcC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGG--KQIRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~G--R~I~ae~~~v~ 200 (207)
+|+++-|++||.|.+|.|... ..+|++||+|.+.++|.+|++.|||+.+.| +.|.++|+...
T Consensus 61 d~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 61 DVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp HHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred HHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 466777899999999999743 247999999999999999999999999955 99999998654
No 169
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.01 E-value=1.7e-09 Score=88.87 Aligned_cols=64 Identities=19% Similarity=0.338 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||++-|++||.|.+|.|..+. +...+|++||.|.+.++|.+|+..|||..+.||.|.+.++..
T Consensus 30 ~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 30 AMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 5677778999999999998653 467799999999999999999999999999999999988754
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.00 E-value=9.5e-10 Score=88.69 Aligned_cols=64 Identities=16% Similarity=0.297 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||++-|++||.|.+|.|..+. +...+|++||+|.+.++|.+|+..|||..++|+.|.+.+..-
T Consensus 43 ~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 43 DTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred HHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 5677778999999999997653 456799999999999999999999999999999999987643
No 171
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.00 E-value=1.6e-09 Score=86.03 Aligned_cols=63 Identities=10% Similarity=0.177 Sum_probs=55.4
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||++.|++||.|..+.|..+. +.+.+|++||+|.+.++|.+|+.. +|..++|++|.+.++..
T Consensus 119 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALS 182 (196)
T ss_dssp HHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-
T ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCC
Confidence 5777888999999999997663 467899999999999999999987 89999999999999643
No 172
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.99 E-value=2.4e-09 Score=83.40 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCccee-EEEEeCChHHHHHHHHHhCCceeCC--eEEEEEecCcC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGN-VYVSYSNEREALRAFYALTGRFYGG--KQIRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~-VyVkF~~~e~A~~Ai~~LnGR~f~G--R~I~ae~~~v~ 200 (207)
+++..-|++||.|.+|+|... .|+ +||+|.+.++|.+|+..|||..+.| ++|.++|+...
T Consensus 40 ~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 40 DVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp HHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred HHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 567788899999999999753 286 9999999999999999999999877 69999997654
No 173
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.99 E-value=5.7e-10 Score=76.87 Aligned_cols=61 Identities=10% Similarity=0.205 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCC-CCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNK-SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
+||..-|++||.|.++.|..+. +...+|++||+|.+.++|.+|+.. +|..++|++|.+.++
T Consensus 14 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 14 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp HHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 4667777889999999997653 357799999999999999999995 999999999998763
No 174
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.53 E-value=5.2e-11 Score=89.39 Aligned_cols=64 Identities=19% Similarity=0.392 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCCeeE--------EEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQ--------FKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~--------v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||..-|++||.|.. |.|..+ .+...+|++||+|.+.++|.+|+..|||..++|++|.+.++..
T Consensus 22 ~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (116)
T 2lcw_A 22 ESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 94 (116)
Confidence 467777889999998 778765 3457799999999999999999999999999999999999743
No 175
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.98 E-value=1e-09 Score=80.19 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
+||..-|++||.|..+.|..+.+...+|++||.|.+.++|.+|+. ||..++|+.|.+.+.
T Consensus 24 ~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 24 TEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred HHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 567777899999999999877667789999999999999999999 999999999998775
No 176
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.98 E-value=1.5e-09 Score=90.25 Aligned_cols=60 Identities=25% Similarity=0.327 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||++-|++||.|.+|.|..+. +|++||+|.+.++|.+|+..|||..++|++|.+.++.-
T Consensus 50 ~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 50 QSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp HHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred HHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 5677777899999999998753 79999999999999999999999999999999999753
No 177
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.97 E-value=1.1e-09 Score=92.63 Aligned_cols=63 Identities=21% Similarity=0.236 Sum_probs=57.0
Q ss_pred HHHHHHHHhcC--CeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLG--QVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG--~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||++-|++|| .|..|.|..+ .+...+|++||.|.+.++|.+|+..|||..++||.|.|.++.
T Consensus 83 ~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 83 EDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp HHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred HHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 56777889999 9999999876 456789999999999999999999999999999999999874
No 178
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.97 E-value=2.3e-09 Score=75.63 Aligned_cols=54 Identities=13% Similarity=0.364 Sum_probs=46.9
Q ss_pred HHHHHHHHhc----C-------CeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEE
Q psy16559 136 DDVLPELRSL----G-------QVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQ 195 (207)
Q Consensus 136 eDV~~Ec~ky----G-------~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae 195 (207)
+||..-|++| | .|.++.+..+ +|++||.|.+.++|.+|+ .|||..++||+|.++
T Consensus 21 ~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 21 EAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIR 85 (87)
T ss_dssp HHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred HHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEe
Confidence 4555556666 8 9999999754 799999999999999999 999999999999986
No 179
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.97 E-value=3.3e-10 Score=89.62 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPL 201 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~ 201 (207)
+||.+-|++|| |+.|.|..+...+.+|++||+|.+.++|.+|+ .|||..++||.|.+..+....
T Consensus 61 ~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 61 NDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp HHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred HHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 57777888999 77999987766788999999999999999999 899999999999998876543
No 180
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=4.7e-10 Score=86.94 Aligned_cols=66 Identities=12% Similarity=0.106 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCe----eEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCcc
Q psy16559 136 DDVLPELRSLGQV----TQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLW 202 (207)
Q Consensus 136 eDV~~Ec~kyG~V----~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f 202 (207)
+||.+-|++||.| ..|.|..+.+.+++|++||+|.+.++|.+|+.. ||..++||.|.+..+....+
T Consensus 38 ~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~e~ 107 (123)
T 2dha_A 38 EEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTAAEV 107 (123)
T ss_dssp HHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECHHHH
T ss_pred HHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCHHHH
Confidence 6788888999875 688887766678899999999999999999997 99999999999887755443
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.96 E-value=4.3e-09 Score=89.04 Aligned_cols=82 Identities=21% Similarity=0.369 Sum_probs=66.5
Q ss_pred CCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeC
Q psy16559 91 VSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYS 170 (207)
Q Consensus 91 ~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~ 170 (207)
.+++|.|.|+=. . +++++|. ..+.+-|++||.|.+|.|.. ....+|++||+|.
T Consensus 8 ~~~~l~V~nlp~--~----------------~~~~~l~-------~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~ 60 (282)
T 3pgw_A 8 PNHTIYINNLNE--K----------------IKKDELK-------KSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFK 60 (282)
T ss_pred CCCEEEEeCCCC--C----------------CCHHHHH-------HHHHHHHhccCCeEEEEEcC--CCCcceEEEEEEC
Confidence 578999999832 2 2333433 23556788999999999986 3457899999999
Q ss_pred ChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 171 NEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 171 ~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+.++|.+|+..|||..+.||+|.+.|+..
T Consensus 61 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 89 (282)
T 3pgw_A 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89 (282)
T ss_pred CHHHHHHHHHHhcCCeeCCcEEEEEEecc
Confidence 99999999999999999999999999754
No 182
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.96 E-value=1.1e-09 Score=87.83 Aligned_cols=60 Identities=25% Similarity=0.327 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||+.-|++||.|.+|.|..+. +|++||+|.+.++|.+|+..|||..++|++|.+.++.-
T Consensus 19 ~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 19 QSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp HHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred HHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 5677778999999999998753 79999999999999999999999999999999999753
No 183
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=2.8e-09 Score=76.95 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
+||..-|++||.|.+|.+.... .. ++||.|.+.++|.+|+. |||..++||+|.+.+....
T Consensus 23 ~~l~~~F~~~G~v~~v~~~~~~-g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 23 AQLSEYFLAFGPVASVVMDKDK-GV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp HHHHHHGGGTSCEEEEEECSSS-CC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred HHHHHHHHhcCCeEEEEEcCCC-Cc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 5777788999999998433322 22 99999999999999999 9999999999999886543
No 184
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.94 E-value=4e-09 Score=83.75 Aligned_cols=82 Identities=16% Similarity=0.245 Sum_probs=67.1
Q ss_pred CCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCC-CCCcceeEE
Q psy16559 88 KPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNK-SPHLRGNVY 166 (207)
Q Consensus 88 ~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~-~~h~~G~Vy 166 (207)
.|..+++|.|.|+=. .+ ++ +||.+-|++||.|.+|.|..+. +...+|++|
T Consensus 9 ~~~~~~~l~V~nLp~--~~----------------te-----------~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~af 59 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSF--ET----------------TD-----------ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59 (196)
T ss_dssp CCGGGGEEEEESCCT--TC----------------CH-----------HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEE
T ss_pred CCCCCCEEEEeCCCC--CC----------------CH-----------HHHHHHHHhCCCEEEEEEEEcCCCCCccceEE
Confidence 455688999999822 21 22 5677788999999999998763 456799999
Q ss_pred EEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 167 VSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 167 VkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
|+|.+.++|.+|+.. +|..++|+.|.+.++..
T Consensus 60 V~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 60 VTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp EEESSHHHHHHHHHT-CSCEETTEECEEEECCC
T ss_pred EEeCCHHHHHHHHhc-CCCEECCEEeeeecccC
Confidence 999999999999987 99999999999998643
No 185
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.94 E-value=4.9e-09 Score=86.32 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
++|.+-|++||.|..|.|+.+.....+|++||.|.+.++|.+|+..+++ .|+||+|.+.+.
T Consensus 124 ~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~-~~~Gr~l~V~~~ 184 (193)
T 2voo_A 124 DDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ-KYKETDLLILFK 184 (193)
T ss_dssp HHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC-EETTEECEEEET
T ss_pred HHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC-eECCEEEEEEEh
Confidence 5777788999999999999876678899999999999999999988765 899999999875
No 186
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=5e-09 Score=76.30 Aligned_cols=81 Identities=15% Similarity=0.219 Sum_probs=60.3
Q ss_pred CCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccC-CCCCcceeE
Q psy16559 87 IKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCN-KSPHLRGNV 165 (207)
Q Consensus 87 ~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~V 165 (207)
..+..+.+|.|.|+=. . ++++ ||.+-|+.|+ .+.+..+ .....+|++
T Consensus 10 ~~~~~~~~l~V~nLp~--~----------------~t~~-----------~l~~~F~~~~---~~~~~~~~~~~~~~g~a 57 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSE--D----------------TTEE-----------TLKESFDGSV---RARIVTDRETGSSKGFG 57 (102)
T ss_dssp SSSCCCSSEEEECCCT--T----------------CCHH-----------HHHHTSTTCS---EEEEEECSSSCSEEEEE
T ss_pred CCCCCCCEEEEeCCCC--c----------------cCHH-----------HHHHHhcCCe---EEEEEecCCCCCcCcEE
Confidence 4456788999998832 1 2333 4444445564 4444433 346789999
Q ss_pred EEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 166 YVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 166 yVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
||+|.+.++|.+|+..|||..++|+.|.++++.-
T Consensus 58 fV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 58 FVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp EEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred EEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 9999999999999999999999999999999753
No 187
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.93 E-value=9.6e-10 Score=82.94 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEe
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQF 196 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~ 196 (207)
+||.+-|++||.|..+.|..+ |++||+|.+.++|.+|++.|||..++|+.|.+.|
T Consensus 31 ~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 31 QDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp THHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred HHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 466777889999999999764 9999999999999999999999999999944333
No 188
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.92 E-value=4.1e-09 Score=87.50 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=53.4
Q ss_pred HHHHHHHHhcC-CeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeC-CeEEEEEecC
Q psy16559 136 DDVLPELRSLG-QVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYG-GKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG-~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~-GR~I~ae~~~ 198 (207)
+||++.|++|| .|..|.|..+ .+|++||+|.+.++|.+|+..|||+.++ ||+|.+.|+.
T Consensus 166 ~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 166 EDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp HHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred HHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 57888899999 9999999543 2699999999999999999999999999 9999999974
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.91 E-value=7.3e-09 Score=87.67 Aligned_cols=65 Identities=15% Similarity=0.280 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~ 200 (207)
+||..-|++||.|..+.|..+ .++..+|++||+|.+.++|.+|+..|||..++|++|.+.++.-.
T Consensus 110 ~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 110 QQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred HHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 577788899999999988754 35678999999999999999999999999999999999997543
No 190
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.89 E-value=4.1e-09 Score=89.59 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=52.9
Q ss_pred HHHHHHHHhcC-CeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLG-QVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG-~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
++|...|++|| .|..+.|..+..+..+|++||+|.+.++|.+|+..|||..++|++|.+.++..
T Consensus 132 ~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 196 (292)
T 2ghp_A 132 RNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP 196 (292)
T ss_dssp HHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 56777889999 99999998766566799999999999999999999999999999999999743
No 191
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.89 E-value=1.7e-09 Score=84.32 Aligned_cols=85 Identities=9% Similarity=0.126 Sum_probs=67.3
Q ss_pred CCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCee--EEEEccCCCCCccee
Q psy16559 87 IKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVT--QFKVCCNKSPHLRGN 164 (207)
Q Consensus 87 ~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~--~v~V~~n~~~h~~G~ 164 (207)
..|..+.+|.|.||=. .. ++ +||++-|+.| .|+ .|.|..+....++|+
T Consensus 37 ~~~~~~~~lfVgnLp~--~~----------------te-----------~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGf 86 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPF--GC----------------TK-----------EEIVQFFSGL-EIVPNGITLPVDPEGKITGE 86 (126)
T ss_dssp TCSSSCCEEEEECCCT--TC----------------CH-----------HHHHHHTTTS-CEEEEEEECCCCSSSSSCSE
T ss_pred CCCCCCCEEEEeCCCC--CC----------------CH-----------HHHHHHHhcC-CceeeEEEEEECCCCCCceE
Confidence 4455678999999832 21 22 5777788899 566 899987766788999
Q ss_pred EEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCcc
Q psy16559 165 VYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLW 202 (207)
Q Consensus 165 VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f 202 (207)
+||+|.+.++|.+|+.. +|..++||.|.+..+....+
T Consensus 87 aFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~~~e~ 123 (126)
T 2hgm_A 87 AFVQFASQELAEKALGK-HKERIGHRYIEVFKSSQEEV 123 (126)
T ss_dssp EEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEECHHHH
T ss_pred EEEEECCHHHHHHHHHH-CCCEECCEEEEEEECCHHHh
Confidence 99999999999999985 78999999999988765443
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.88 E-value=6.1e-09 Score=88.23 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||+.-|++||.|..|.|..+ +|++||+|.+.++|.+|+..|||..++|++|.+.++.
T Consensus 37 ~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 37 EDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp HHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 577778899999999999654 6999999999999999999999999999999999874
No 193
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.88 E-value=5.6e-09 Score=81.13 Aligned_cols=63 Identities=21% Similarity=0.256 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCC---CcceeEEEEeCChHHHHHHHHHhCCceeC---CeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSP---HLRGNVYVSYSNEREALRAFYALTGRFYG---GKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~---h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~---GR~I~ae~~~ 198 (207)
+||++-|++||.|.++.|..+... ..+|++||+|.+.++|.+|+..|||..+. +++|.+.+..
T Consensus 18 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~ 86 (175)
T 3nmr_A 18 KDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPAD 86 (175)
T ss_dssp HHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECG
T ss_pred HHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccc
Confidence 567777899999999999876543 67899999999999999999999997765 6777777654
No 194
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=5.7e-09 Score=78.23 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
+||++-|++||.|.+|.|.. ..+|++||+|.+.++|.+|+..++| +.|++|.+.|...
T Consensus 32 ~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 32 DVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp HHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred HHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 57777889999999999983 5689999999999999999999777 6899999999754
No 195
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.84 E-value=1.3e-08 Score=73.67 Aligned_cols=76 Identities=12% Similarity=0.204 Sum_probs=56.1
Q ss_pred CCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeE
Q psy16559 86 HIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNV 165 (207)
Q Consensus 86 H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~V 165 (207)
+..|..+.+|.|.|+=. . +++ +||++.|++||.|.++.|..+ .+|++
T Consensus 5 ~~~~~~~~~l~V~~Lp~--~----------------~te-----------~~L~~~F~~~G~i~~v~i~~~----srGfa 51 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTE--D----------------MTA-----------EELQQFFCQYGEVVDVFIPKP----FRAFA 51 (89)
T ss_dssp ------CCEEEEESCCT--T----------------CCH-----------HHHHHHHTTTSCEEEEECCSS----CCSEE
T ss_pred CCCCCCCCEEEEeCCCC--C----------------CCH-----------HHHHHHHhccCCEEEEEEeeC----CCCEE
Confidence 34566778899988833 2 122 577888899999999999863 58999
Q ss_pred EEEeCChHHHHHHHHHhCCceeC--CeEEEEEecC
Q psy16559 166 YVSYSNEREALRAFYALTGRFYG--GKQIRGQFCN 198 (207)
Q Consensus 166 yVkF~~~e~A~~Ai~~LnGR~f~--GR~I~ae~~~ 198 (207)
||.|.+.++|. .|+|..+. |++|.+.++.
T Consensus 52 FV~F~~~~~A~----~~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 52 FVTFADDKVAQ----SLCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp EEEESCHHHHH----HHTTCEEEETTEEEEEEECC
T ss_pred EEEECCHHHHH----HHcCCCcccCCEEEEEEEcC
Confidence 99999999998 46777654 9999998864
No 196
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.83 E-value=1.3e-09 Score=85.51 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=59.5
Q ss_pred CCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEE
Q psy16559 87 IKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVY 166 (207)
Q Consensus 87 ~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~Vy 166 (207)
..|..+.+|.|.|+=. . ++++ ||+.-|++||.|..+.|.+......+|++|
T Consensus 8 ~~~~~~~~l~V~nLp~--~----------------~t~~-----------~l~~~f~~~g~~~~~~~~~~~~~~~~g~af 58 (175)
T 1fje_B 8 SESTTPFNLFIGNLNP--N----------------KSVA-----------ELKVAISELFAKNDLAVVDVRTGTNRKFGY 58 (175)
T ss_dssp SSCSSSEEEEEECCCT--T----------------SCHH-----------HHHHHHHHHHHHHTCCCCEEEEETTTTEEE
T ss_pred CCCCCCcEEEEeCCCC--C----------------CCHH-----------HHHHHHHHhCCcceEEEEECCCCccccEEE
Confidence 3566789999999832 2 2333 444445555554443333323345689999
Q ss_pred EEeCChHHHHHHHHHhCCceeCCeEEEEEecCc
Q psy16559 167 VSYSNEREALRAFYALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 167 VkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v 199 (207)
|+|.+.++|.+|+ .|||..++|++|.+.++..
T Consensus 59 V~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 59 VDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp EEESSHHHHHHHH-HGGGEEETTEEEEEECCCC
T ss_pred EEECCHHHHHHHH-hcCCCEeCCeEEEEecCCC
Confidence 9999999999999 5999999999999998753
No 197
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.79 E-value=1.7e-08 Score=78.17 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||++-|++||.|.+|.|..+ .+...+|++||+|.+.++|.+|+.. +..++|+.|.+.++.
T Consensus 18 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 18 DNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp HHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred HHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 567777899999999999876 3467899999999999999999995 678999999887753
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.79 E-value=1.5e-08 Score=85.71 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHh-CCceeC---CeEEEEEecCcC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYAL-TGRFYG---GKQIRGQFCNVP 200 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~L-nGR~f~---GR~I~ae~~~v~ 200 (207)
+||...|++||.|..|.|..+.++..+|++||+|.+.++|.+|+..| +|.++. ||+|.+.++...
T Consensus 111 ~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 111 ELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 57778889999999999987766778999999999999999999999 566666 999999987543
No 199
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=3.4e-08 Score=73.69 Aligned_cols=62 Identities=19% Similarity=0.342 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCccc
Q psy16559 133 EFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWS 203 (207)
Q Consensus 133 eFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~f~ 203 (207)
+++.+|...|+.||.|..++|..+ ..||.|.+.++|.+|+. |||.-++||.|++.+. -.+|-
T Consensus 27 ~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk-t~dW~ 88 (91)
T 2dnr_A 27 ALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNRTITIALK-SPSGP 88 (91)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC-CCSSC
T ss_pred HHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC-CCCcc
Confidence 567899999999999999999763 37999999999999998 9999999999999986 34554
No 200
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=2.4e-08 Score=74.80 Aligned_cols=58 Identities=14% Similarity=0.152 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCeeEEEEccCCC----CCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEe
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKS----PHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQF 196 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~----~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~ 196 (207)
+||.+-|++||.|. +.+..+.. ...+|++||.|.+.++|.+|++.|++ ++|+.|.+..
T Consensus 23 ~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~~~ 84 (114)
T 2dnl_A 23 DEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLCVS 84 (114)
T ss_dssp HHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEEEC
T ss_pred HHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEecc
Confidence 56777789999999 66654432 47799999999999999999999943 4555444443
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.70 E-value=5.3e-08 Score=77.35 Aligned_cols=57 Identities=12% Similarity=0.279 Sum_probs=47.0
Q ss_pred HHHHHHHHhc----C-------CeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSL----G-------QVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~ky----G-------~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||.+-|++| | .|.++.+.. .+|++||+|.+.++|.+|+ .|||..++|++|.+.++.
T Consensus 19 ~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~-----~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~ 86 (198)
T 2yh0_A 19 EAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPH 86 (198)
T ss_dssp HHHHHHHHHHHHHHTCCSSSSCSEEEEEEET-----TTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCC
T ss_pred HHHHHHHHHHHhhcccccCCCCceEEeEecC-----CCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCC
Confidence 3455555666 5 777777743 3799999999999999999 899999999999999864
No 202
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.69 E-value=4.7e-08 Score=77.80 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCeeEEEEccC-CCCCcceeEEEEeCC----hHH----HHHHHH--HhCCceeCCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCN-KSPHLRGNVYVSYSN----ERE----ALRAFY--ALTGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n-~~~h~~G~VyVkF~~----~e~----A~~Ai~--~LnGR~f~GR~I~ae~~~v 199 (207)
.+|+.=|+.||.|.++.+..+ .++.++|+.||+|.+ +++ |.+|+. .|||..++||+|.|.+-+.
T Consensus 21 ~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 21 ISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKH 95 (136)
T ss_dssp HHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCT
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECcc
Confidence 467777799999999988654 456899999999996 433 899999 8999999999999998653
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.67 E-value=6.6e-08 Score=87.17 Aligned_cols=57 Identities=23% Similarity=0.360 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCcee---CCe--EEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFY---GGK--QIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f---~GR--~I~ae~~ 197 (207)
+|+.+.|++||.|.+|.+.. .+|++||+|.+.++|++|++.|||..+ .|+ +|.+.|+
T Consensus 35 ~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 35 NQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 96 (345)
T ss_dssp HHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEC
T ss_pred HHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEe
Confidence 67888999999999998865 379999999999999999999999988 356 6788887
No 204
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.66 E-value=7.8e-08 Score=79.56 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCe--eEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCe----EEEEEe
Q psy16559 136 DDVLPELRSLGQV--TQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGK----QIRGQF 196 (207)
Q Consensus 136 eDV~~Ec~kyG~V--~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR----~I~ae~ 196 (207)
+|+++-|++||.| ..+.|....+ ...|.+||+|.+.++|.+|+..|||..++|+ ++++-|
T Consensus 138 ~~L~~~F~~~G~v~~~~v~~~~~~~-~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 138 ENFFEICDELGVKRPTSVKVFSGKS-ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp HHHHHHHHHHTCCCCSEEEECSCCS-SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred HHHHHHHHhcCCcceEEEEEEcCCC-CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 5777888999999 8999976543 3459999999999999999999999999998 455544
No 205
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.66 E-value=8e-08 Score=74.64 Aligned_cols=57 Identities=12% Similarity=0.315 Sum_probs=47.5
Q ss_pred HHHHHHHHhc----C-------CeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecC
Q psy16559 136 DDVLPELRSL----G-------QVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198 (207)
Q Consensus 136 eDV~~Ec~ky----G-------~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~ 198 (207)
+||.+-|++| | .|.++.+..+ +|++||+|.+.++|.+|+ .|||..++|++|.+.+..
T Consensus 19 ~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-----~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~ 86 (172)
T 2g4b_A 19 EAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPH 86 (172)
T ss_dssp HHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-----TTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCS
T ss_pred HHHHHHHHHHhhhcccccCCCCceeeeEecCC-----CCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCc
Confidence 3455555666 7 7888888543 799999999999999999 999999999999998854
No 206
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=5.7e-08 Score=73.00 Aligned_cols=56 Identities=14% Similarity=0.323 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEe
Q psy16559 133 EFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQF 196 (207)
Q Consensus 133 eFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~ 196 (207)
+++.+|.+.|+.||.|..+++..+ ..||.|.+.++|.+|+. |||..++||.|++.+
T Consensus 36 ~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 36 DLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKVKGRAVKISG 91 (95)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEETTEEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeeeCCeEEEEec
Confidence 577899999999999999999764 39999999999999999 999999999999987
No 207
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=2.2e-07 Score=65.91 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCcee--CCeEEEEEecCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFY--GGKQIRGQFCNV 199 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f--~GR~I~ae~~~v 199 (207)
+||+.-|++||.|.++.|..+ .+|++||.|.+.++|++ |+|.-+ +|++|.+.+..-
T Consensus 20 ~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 20 DELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp HHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEECCCC
T ss_pred HHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEEecCC
Confidence 567778899999999999764 58999999999999975 466555 999999998643
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.61 E-value=0.0001 Score=57.26 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCC-hHHHHHHHHHhC--CceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSN-EREALRAFYALT--GRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~-~e~A~~Ai~~Ln--GR~f~GR~I~ae~~ 197 (207)
+||++.|++||.|..|.+..... ..||+|.+ +.+|..|+..|| |.-+.|..+++++.
T Consensus 34 edLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 34 EDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp HHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred HHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 68888999999999999876532 59999999 899999999994 88899988888765
No 209
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.18 E-value=0.0024 Score=48.43 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCc
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPL 201 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~ 201 (207)
+.+..-+..|+++..+...... ..|-|.|.++++|.+|-..|+|--|.|+.+++.|...++
T Consensus 25 ~~~e~Lf~~~~~~~tF~~lkSF-----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 25 AKFESLFRTYDKDTTFQYFKSF-----KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp HHHHHHHHTTCSSCEEEEETTT-----TEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred HHHHHHHHhhCcCcceeecCcc-----eEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCCC
Confidence 3455556899999998876643 479999999999999999999999999999999975443
No 210
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.99 E-value=0.0018 Score=50.18 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCC-eEEEE
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGG-KQIRG 194 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~G-R~I~a 194 (207)
.-|..+|++||.|.+.....+ .-.++|+|.+..+|++|+.. ||+.++| -.|-|
T Consensus 38 ~~VL~~F~~~G~Iv~~~~~~~-----~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV 91 (119)
T 1wwh_A 38 SYILLQFAQYGNILKHVMSNT-----GNWMHIRYQSKLQARKALSK-DGRIFGESIMIGV 91 (119)
T ss_dssp HHHHHHHHTTSCEEEEEECSS-----SSEEEEEESSHHHHHHHHTT-TTCEETTTEECEE
T ss_pred HHHHHHHHhhCcEEEeccCCC-----CCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEE
Confidence 579999999999999987443 35799999999999999987 9999986 44444
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.0045 Score=47.75 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=45.9
Q ss_pred HHHHHHHhc-----CCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEE
Q psy16559 137 DVLPELRSL-----GQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQ 195 (207)
Q Consensus 137 DV~~Ec~ky-----G~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae 195 (207)
-|+.-.+.| |.+++|++.... |=+.|.|.+..+|.+|.-+|||--|+||.|+|-
T Consensus 37 rIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 37 LICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp HHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred HHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 355556677 999999986542 459999999999999999999999999999985
No 212
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=95.88 E-value=0.0053 Score=42.84 Aligned_cols=29 Identities=34% Similarity=0.602 Sum_probs=25.5
Q ss_pred CCCcccccccccccccccCcccCCCCCCC
Q psy16559 62 PDKELCPFYSKVGACRFFDHCSRNHIKPS 90 (207)
Q Consensus 62 ~d~~~C~Fy~K~GaCR~GdrCSr~H~~P~ 90 (207)
.....|++|.++|.|++|++|...|....
T Consensus 10 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~e 38 (77)
T 1m9o_A 10 YKTELCRTYSESGRCRYGAKCQFAHGLGE 38 (77)
T ss_dssp CCSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred ccchhCHHhhhCCCcCCCCCccCCCCChh
Confidence 45688999999999999999999998754
No 213
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.63 E-value=0.011 Score=46.51 Aligned_cols=61 Identities=18% Similarity=0.334 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCeeE-EEEccCCC------------C--CcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 136 DDVLPELRSLGQVTQ-FKVCCNKS------------P--HLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~-v~V~~n~~------------~--h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
.-|..+|++||.|.+ +.+.+... + .-..-|.|+|++..+|.+|+.. ||+-|+|-.|=|..+
T Consensus 21 ~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ii~G~mIGV~Py 96 (132)
T 3p3d_A 21 NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAVFNGVLLGVIPY 96 (132)
T ss_dssp HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCEETTEECEEEEC
T ss_pred HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeEeCcEEEEEEEC
Confidence 468899999999876 33322100 0 1246799999999999999986 999999988877654
No 214
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.14 E-value=0.0086 Score=45.95 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=36.6
Q ss_pred CCcceeEEEEeCChHHHHHHHHHh-CCceeCCeEEEEEecCc
Q psy16559 159 PHLRGNVYVSYSNEREALRAFYAL-TGRFYGGKQIRGQFCNV 199 (207)
Q Consensus 159 ~h~~G~VyVkF~~~e~A~~Ai~~L-nGR~f~GR~I~ae~~~v 199 (207)
..+.|..+|+|.+.++|++|+..| ||..++| +|.+.++.-
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 468999999999999999999999 9999999 999988653
No 215
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=94.18 E-value=0.0084 Score=41.78 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=0.0
Q ss_pred CcccccccccccccccCcccCCCCCC
Q psy16559 64 KELCPFYSKVGACRFFDHCSRNHIKP 89 (207)
Q Consensus 64 ~~~C~Fy~K~GaCR~GdrCSr~H~~P 89 (207)
...|++|..+|.|++|++|...|..+
T Consensus 50 ~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 50 TELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp --------------------------
T ss_pred CCcccchhhCcCCCCcCcCCCCCCCC
Confidence 35799999999999999999999753
No 216
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=94.06 E-value=0.017 Score=42.84 Aligned_cols=24 Identities=38% Similarity=0.797 Sum_probs=16.2
Q ss_pred CCcccccccccccccccCcccCCCC
Q psy16559 63 DKELCPFYSKVGACRFFDHCSRNHI 87 (207)
Q Consensus 63 d~~~C~Fy~K~GaCR~GdrCSr~H~ 87 (207)
..+.|.|| .+|.|++|+.|.-.|.
T Consensus 12 k~~lC~~f-~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 12 KRELCKFY-ITGFCARAENCPYMHG 35 (98)
T ss_dssp CCSBCTTT-TTTCCSCSTTCSSBSS
T ss_pred CCccCccc-ccCcCCCCCCCCCCCC
Confidence 45567766 4677777777777776
No 217
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.52 E-value=0.062 Score=41.11 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=28.2
Q ss_pred EEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCc
Q psy16559 150 QFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGR 185 (207)
Q Consensus 150 ~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR 185 (207)
++.|..|.. .+.|+.||+|.+.++|++|++.++|.
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhccc
Confidence 455555543 57999999999999999999998863
No 218
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=92.53 E-value=0.066 Score=39.65 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=23.4
Q ss_pred CcccccccccccccccCcccCCCCCC
Q psy16559 64 KELCPFYSKVGACRFFDHCSRNHIKP 89 (207)
Q Consensus 64 ~~~C~Fy~K~GaCR~GdrCSr~H~~P 89 (207)
...|.||.++|.|.+|++|...|...
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 57799999999999999999999854
No 219
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=92.05 E-value=0.063 Score=37.58 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=22.2
Q ss_pred CCCcccccccccccccccCcccCCCCCC
Q psy16559 62 PDKELCPFYSKVGACRFFDHCSRNHIKP 89 (207)
Q Consensus 62 ~d~~~C~Fy~K~GaCR~GdrCSr~H~~P 89 (207)
...+.|.||.+ |.|+.|+.|...|...
T Consensus 14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~ 40 (72)
T 2rhk_C 14 EKTVVCKHWLR-GLCKKGDQCEFLHEYD 40 (72)
T ss_dssp CCCSBCHHHHT-TCCCCGGGSSSBCSCC
T ss_pred CcCeeCHHHhc-CCCCCCCCCCCccccc
Confidence 45678998888 9999999999999853
No 220
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.95 E-value=0.053 Score=38.23 Aligned_cols=22 Identities=27% Similarity=0.624 Sum_probs=11.1
Q ss_pred cccccccccccccccCcccCCCC
Q psy16559 65 ELCPFYSKVGACRFFDHCSRNHI 87 (207)
Q Consensus 65 ~~C~Fy~K~GaCR~GdrCSr~H~ 87 (207)
+.|.||.+ |.|+.||.|.-.|.
T Consensus 11 ~~C~~fl~-G~C~~G~~C~fsH~ 32 (77)
T 2d9n_A 11 VVCKHWLR-GLCKKGDQCEFLHE 32 (77)
T ss_dssp SBCHHHHT-TCCSCTTSSSSBCS
T ss_pred eeCHhHcc-CcCCCCCCCCCccc
Confidence 34554444 55555555555554
No 221
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.31 E-value=0.041 Score=38.77 Aligned_cols=22 Identities=27% Similarity=0.532 Sum_probs=19.1
Q ss_pred cccccccccccccccCcccCCCC
Q psy16559 65 ELCPFYSKVGACRFFDHCSRNHI 87 (207)
Q Consensus 65 ~~C~Fy~K~GaCR~GdrCSr~H~ 87 (207)
..|..| .+|.|+||++|..-|-
T Consensus 21 ~LC~~~-~~G~C~~G~~C~FAHG 42 (69)
T 2d9m_A 21 SICDRY-MNGTCPEGNSCKFAHG 42 (69)
T ss_dssp SBCHHH-HHSCCSSCSSCSSBSS
T ss_pred ccCccc-CcCCCCCCCccCCcCC
Confidence 679988 7899999999997774
No 222
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.95 E-value=0.1 Score=36.70 Aligned_cols=28 Identities=39% Similarity=0.748 Sum_probs=24.6
Q ss_pred CcccccccccccccccCcccCCCCCCCCC
Q psy16559 64 KELCPFYSKVGACRFFDHCSRNHIKPSVS 92 (207)
Q Consensus 64 ~~~C~Fy~K~GaCR~GdrCSr~H~~P~~S 92 (207)
...|.||.+.|.|. |++|.-.|..|...
T Consensus 38 ~~~C~~f~~~G~C~-~~~C~f~H~~~~~~ 65 (77)
T 2d9n_A 38 MPECYFYSKFGECS-NKECPFLHIDPESK 65 (77)
T ss_dssp SCBCHHHHHTCCCC-CSSCSSBCCCTTSS
T ss_pred CCCCcccCCCCccC-CCCeeccCCCcccc
Confidence 35699999999999 99999999998653
No 223
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=89.48 E-value=0.089 Score=36.81 Aligned_cols=27 Identities=41% Similarity=0.782 Sum_probs=23.8
Q ss_pred CcccccccccccccccCcccCCCCCCCC
Q psy16559 64 KELCPFYSKVGACRFFDHCSRNHIKPSV 91 (207)
Q Consensus 64 ~~~C~Fy~K~GaCR~GdrCSr~H~~P~~ 91 (207)
...|.||.+.|.|.+ ++|.-.|..|..
T Consensus 44 ~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 44 MSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp CCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred CCcccccCCCCCCCC-CCeeccCCCccc
Confidence 457999999999999 999999999964
No 224
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=88.78 E-value=1.7 Score=31.67 Aligned_cols=58 Identities=16% Similarity=0.299 Sum_probs=38.6
Q ss_pred HHhcCCeeEEEEccC---CCCCcceeEEEEeCChHHHHHHHHHhCCceeCC-----eEEEEEecCc
Q psy16559 142 LRSLGQVTQFKVCCN---KSPHLRGNVYVSYSNEREALRAFYALTGRFYGG-----KQIRGQFCNV 199 (207)
Q Consensus 142 c~kyG~V~~v~V~~n---~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~G-----R~I~ae~~~v 199 (207)
++-++.+.-..-+.. ...+.-+.+||.|.+.+++..-.+.++|..|-. -+-.+||+|-
T Consensus 22 l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~AP~ 87 (91)
T 1uw4_A 22 LQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPF 87 (91)
T ss_dssp HCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEECSS
T ss_pred hcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEcCC
Confidence 344556554443321 123556889999999999999999999988732 2334666654
No 225
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=86.92 E-value=2.5 Score=31.62 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=47.6
Q ss_pred CCCCCCCCCceEEeCCCcCccccCcccccccCcccccccChHHHHHHHHhHHHHHHHHHHhcCCeeEEEEccCCCCCcce
Q psy16559 84 RNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRG 163 (207)
Q Consensus 84 r~H~~P~~S~tllL~NMf~~p~~~~~~~~~~d~d~~le~~~eel~~~FdeFyeDV~~Ec~kyG~V~~v~V~~n~~~h~~G 163 (207)
..+..|....++.| . |+ +... . .||..-|+.||.|.--.|.+ .
T Consensus 8 g~d~~p~r~HVf~l-~-FP-~ewK----------------t-----------~DI~~lFs~fggv~I~WidD-------T 50 (100)
T 1whv_A 8 GPDLQPKRDHVLHV-T-FP-KEWK----------------T-----------SDLYQLFSAFGNIQISWIDD-------T 50 (100)
T ss_dssp CSCCCCCCCSEEEE-E-CC-TTCC----------------H-----------HHHHHHHTTTCSCCCEEEET-------T
T ss_pred CCCCCCCCCeEEEE-e-CC-hhhh----------------h-----------HHHHHHhhccCCEEEEEEcC-------C
Confidence 35778888889988 3 33 2221 1 57888889999887777754 3
Q ss_pred eEEEEeCChHHHHHHHHHhC
Q psy16559 164 NVYVSYSNEREALRAFYALT 183 (207)
Q Consensus 164 ~VyVkF~~~e~A~~Ai~~Ln 183 (207)
.+||-|.+.+.|..|+..++
T Consensus 51 sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 51 SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEEecCHHHHHHHHHhcc
Confidence 59999999999999999874
No 226
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=74.67 E-value=1.1 Score=30.68 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=19.7
Q ss_pred cccccccccccccccC-cccCCCCCC
Q psy16559 65 ELCPFYSKVGACRFFD-HCSRNHIKP 89 (207)
Q Consensus 65 ~~C~Fy~K~GaCR~Gd-rCSr~H~~P 89 (207)
..|.+| ..|.|..|+ .|.-.|...
T Consensus 7 ~vC~~f-~~G~C~rg~~~C~f~H~~~ 31 (70)
T 3d2q_A 7 EVCREY-QRGNCNRGENDCRFAHPAD 31 (70)
T ss_dssp EBCHHH-HTTCCSSCTTTCSSBCCCT
T ss_pred hhCHHH-hcCCCCCCCCCCCCccCcc
Confidence 469888 669999999 599999764
No 227
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=69.19 E-value=3.3 Score=27.20 Aligned_cols=28 Identities=21% Similarity=0.483 Sum_probs=24.5
Q ss_pred CCCcccccccccccccccCcccCCCCCC
Q psy16559 62 PDKELCPFYSKVGACRFFDHCSRNHIKP 89 (207)
Q Consensus 62 ~d~~~C~Fy~K~GaCR~GdrCSr~H~~P 89 (207)
.....|.=|.--|-|++|..|+..|..-
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 4567899999999999999999999854
No 228
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=64.43 E-value=6 Score=29.44 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=29.8
Q ss_pred CeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCce
Q psy16559 147 QVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRF 186 (207)
Q Consensus 147 ~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~ 186 (207)
.|.++.+++ +++|+|||+=.+..+...|++.+.+=+
T Consensus 40 ~I~Si~~~~----~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPE----HVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECT----TCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecC----CCceEEEEEeCCHHHHHHHHhccccee
Confidence 488888864 579999999999999999998886543
No 229
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=63.93 E-value=3.6 Score=29.37 Aligned_cols=25 Identities=32% Similarity=0.666 Sum_probs=22.2
Q ss_pred cccccccccccccccC-cccCCCCCCC
Q psy16559 65 ELCPFYSKVGACRFFD-HCSRNHIKPS 90 (207)
Q Consensus 65 ~~C~Fy~K~GaCR~Gd-rCSr~H~~P~ 90 (207)
..|.+|.+ |.|.-|| .|...|..++
T Consensus 10 ~VCr~Flr-G~C~r~d~~C~f~H~~~~ 35 (83)
T 3d2n_A 10 EVCREFQR-GTCSRPDTECKFAHPSKS 35 (83)
T ss_dssp EBCTTGGG-TCCCSCTTTCSSBCCCTT
T ss_pred hhcHHHhc-CCCCCCCCCCCCcCCCcc
Confidence 56999999 9999998 9999999864
No 230
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.70 E-value=1.4 Score=32.40 Aligned_cols=25 Identities=28% Similarity=0.591 Sum_probs=22.2
Q ss_pred cccccccccccccccC-cccCCCCCCC
Q psy16559 65 ELCPFYSKVGACRFFD-HCSRNHIKPS 90 (207)
Q Consensus 65 ~~C~Fy~K~GaCR~Gd-rCSr~H~~P~ 90 (207)
..|.+|.+ |.|..|| .|-..|....
T Consensus 21 ~VCr~Flr-G~C~rgd~~C~FsH~~~~ 46 (98)
T 2e5s_A 21 EVCREFQR-GNCARGETDCRFAHPADS 46 (98)
T ss_dssp EBCSHHHH-TCCSSHHHHCSSBCCSSC
T ss_pred hhhHHHhc-CcCCCCCCCCCCcCCchh
Confidence 57999999 9999999 8999999754
No 231
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=62.68 E-value=6.8 Score=32.47 Aligned_cols=46 Identities=9% Similarity=0.101 Sum_probs=36.6
Q ss_pred eeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEecCcCc
Q psy16559 148 VTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPL 201 (207)
Q Consensus 148 V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~~v~~ 201 (207)
|.++.+.+ +++|+|||+=.+..+...|++.|.+= |..++ .++|+..
T Consensus 139 I~Si~~~d----~lkGYIyVEA~~~~~V~~ai~Gi~~v-y~~~~---~lVPi~E 184 (200)
T 2exu_A 139 ILSIFQRD----NYTGRIYIEAPKQSVIEKFCNGVPDI-YISQK---LLIPVQE 184 (200)
T ss_dssp CCEEECCT----TSTTEEEEECSCHHHHHHHHTTCTTE-EEEEE---EECCGGG
T ss_pred EEEEEecC----CCcEEEEEEECCHHHHHHHHhhhhhh-hcCCc---eEecHHH
Confidence 77777654 68999999999999999999999995 54443 4777754
No 232
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=62.00 E-value=5.7 Score=29.70 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALT 183 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~Ln 183 (207)
.||..-|+.||.|.--.|.+ ..+||-|.+.+.|..|+..++
T Consensus 20 ~Di~~lFs~fggv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 20 SDLYQLFSAFGNIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp HHHHHHTTTSEEEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred HHHHHHHhccCCEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 57888889999666666643 459999999999999999874
No 233
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=61.60 E-value=3.4 Score=35.15 Aligned_cols=38 Identities=29% Similarity=0.468 Sum_probs=26.7
Q ss_pred cccccccc----cccccccCcccCCCCCCC-------CCceEEeCCCcCc
Q psy16559 65 ELCPFYSK----VGACRFFDHCSRNHIKPS-------VSKTLLLNNFFTH 103 (207)
Q Consensus 65 ~~C~Fy~K----~GaCR~GdrCSr~H~~P~-------~S~tllL~NMf~~ 103 (207)
..|.+| | -|.|-+++.|.|.|+=.. ++.+-.=.|++.+
T Consensus 152 eiC~~Y-kG~g~~g~C~~~~~C~kLHIC~~Fl~G~C~f~~CkRsH~~~~~ 200 (229)
T 3u9g_A 152 EICKSY-KGEGRKQTCGQPQPCERLHICEHFTRGNCSYLNCLRSHNLMDR 200 (229)
T ss_dssp CBCTTC-CCSSSCCSCSSSSCCCSBCSCHHHHTTCCCCSSCSSCCCTTSH
T ss_pred hHHHHh-CCCCCCCcCCCCCCCcceeccchhhcCCcCCCCccCccCccCc
Confidence 579999 7 379999999999998543 3444444555443
No 234
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=55.14 E-value=7.3 Score=36.14 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHH
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYA 181 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~ 181 (207)
.++.+=|++||+|.++..+...+ -++-|+|.+.+++..++..
T Consensus 67 ~~l~~y~~~~g~i~~~~~~~~~g----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 67 NKFLKYLSQFGPINNHFFYESFG----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp CHHHHHHGGGSCCCCEEEECSSS----EEEEEECC---CCHHHHSS
T ss_pred HHHHHHHHhcCCcceEEEEccCC----eEEEEEeCCHHHHHHHHhc
Confidence 46677789999999999987542 5789999999998866543
No 235
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=53.09 E-value=2.7 Score=28.68 Aligned_cols=25 Identities=28% Similarity=0.459 Sum_probs=21.4
Q ss_pred CCcccccccccccccccCcccCCCCCC
Q psy16559 63 DKELCPFYSKVGACRFFDHCSRNHIKP 89 (207)
Q Consensus 63 d~~~C~Fy~K~GaCR~GdrCSr~H~~P 89 (207)
....|.+|.| |.|..| .|--.|..|
T Consensus 41 ~~~vC~~flk-G~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 41 TVTVCMDYIK-GRCSRE-KCKYFHPPA 65 (70)
T ss_dssp EEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred cceeccccCc-CCCCCC-CcCeeCCHH
Confidence 3567999998 999999 999999865
No 236
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=51.20 E-value=10 Score=24.40 Aligned_cols=27 Identities=26% Similarity=0.627 Sum_probs=21.6
Q ss_pred cCCCCCCcccccccccccccccCcccC
Q psy16559 58 VETKPDKELCPFYSKVGACRFFDHCSR 84 (207)
Q Consensus 58 ~~te~d~~~C~Fy~K~GaCR~GdrCSr 84 (207)
++..=...|||||.-...-.+-..|+-
T Consensus 10 m~vkCeTPnCpF~mSVnTQP~CHEC~e 36 (49)
T 2eqg_A 10 MDVKCETPNCPFFMSVNTQPLCHECSE 36 (49)
T ss_dssp CSSBCSSTTCCSBCCTTTTTSCHHHHH
T ss_pred EEEeecCCCCCeEEEecCccchHHHHH
Confidence 344456789999999999888888864
No 237
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=49.51 E-value=20 Score=25.55 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=28.9
Q ss_pred eeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCC
Q psy16559 148 VTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTG 184 (207)
Q Consensus 148 V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnG 184 (207)
|..+.|+. ...|+|||+....++...+++...|
T Consensus 40 i~~v~vP~----~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASE----SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECT----TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEec----ccCCEEEEEEecchhHHHHHHCCCC
Confidence 77888875 3689999999999999999998887
No 238
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=41.84 E-value=7.6 Score=28.07 Aligned_cols=25 Identities=32% Similarity=0.687 Sum_probs=22.2
Q ss_pred cccccccccccccccC-cccCCCCCCC
Q psy16559 65 ELCPFYSKVGACRFFD-HCSRNHIKPS 90 (207)
Q Consensus 65 ~~C~Fy~K~GaCR~Gd-rCSr~H~~P~ 90 (207)
..|..|.+ |.|.-|| .|--.|...+
T Consensus 18 ~VCrdFlr-G~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 18 EVCRQFQR-GTCSRSDEECKFAHPPKS 43 (89)
T ss_dssp CBCHHHHH-TCCCCCTTTSSSBCCCSS
T ss_pred hhchHHhc-CCCCCCCCCCCCcCCCcc
Confidence 47999999 9999998 9999998765
No 239
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=41.62 E-value=49 Score=30.56 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCC
Q psy16559 136 DDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTG 184 (207)
Q Consensus 136 eDV~~Ec~kyG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnG 184 (207)
.||..-++.||.|.-..|.+ ..+||.|.+.+.|..+++.++.
T Consensus 454 ~~i~~~fs~fg~v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 454 SDLYQLFSAFGNIQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp HHHHHHGGGGCCCEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCEEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 57777888999664444432 3599999999999999999953
No 240
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.36 E-value=4.6 Score=29.59 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.2
Q ss_pred CCCcccccccccccccccCcccCCCCCC
Q psy16559 62 PDKELCPFYSKVGACRFFDHCSRNHIKP 89 (207)
Q Consensus 62 ~d~~~C~Fy~K~GaCR~GdrCSr~H~~P 89 (207)
.....|.+|.| |-|.+| .|--.|.+|
T Consensus 54 ~~~~vC~~flk-G~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 54 NTVTVCMDYIK-GRCMRE-KCKYFHPPA 79 (98)
T ss_dssp CEEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred Cccccchhhcc-CCCCCC-CcCccCChH
Confidence 45678999988 999999 999999876
No 241
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=37.62 E-value=32 Score=26.34 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=29.0
Q ss_pred eeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCC
Q psy16559 148 VTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTG 184 (207)
Q Consensus 148 V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnG 184 (207)
|.++.|+. ...|+|||+....++...+++.+.|
T Consensus 33 i~~v~vp~----~fPGYVfVe~~~~~~~~~~v~~t~g 65 (152)
T 3p8b_B 33 IYAILAPS----RVKGYIFVEAPNKGVVDEAIRGIRH 65 (152)
T ss_dssp CCEEEECT----TCCSEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEeec----CCCcEEEEEEEchHHHHHHHhCCCC
Confidence 78888875 3679999999999999999999988
No 242
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=33.21 E-value=62 Score=23.11 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16559 19 EKNRQEKEEREAQEKEFKKSIED 41 (207)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~ 41 (207)
++.+++.++|++.++++++.+..
T Consensus 48 ~~~~~~~~er~~Kl~~~~e~l~~ 70 (86)
T 3nr7_A 48 SAAAAEVEERTRKLQQYREMLIA 70 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566777778887776654
No 243
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=29.05 E-value=57 Score=25.77 Aligned_cols=13 Identities=8% Similarity=0.056 Sum_probs=8.6
Q ss_pred HHHHHHHHHhHHH
Q psy16559 4 QEEWEKEQKRLRD 16 (207)
Q Consensus 4 ~~e~e~~~~~~~~ 16 (207)
|.||++.++.++.
T Consensus 82 Rae~~k~~~~~~~ 94 (152)
T 4dgw_B 82 RTQYWEFEKDKDR 94 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6788887764433
No 244
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=28.45 E-value=1.3e+02 Score=24.48 Aligned_cols=40 Identities=15% Similarity=0.352 Sum_probs=19.6
Q ss_pred HHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16559 5 EEWEKEQKRLRDI-----EEKNRQEKEEREAQEKEFKKSIEDFIE 44 (207)
Q Consensus 5 ~e~e~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~ 44 (207)
.+|.++|++.=++ +.++++-++.-.+.+..+-.+-...++
T Consensus 88 RKWREEQkkRLEeRDA~SekkKeEwrEKAKKELDDWYenYNEQ~E 132 (190)
T 3lvg_D 88 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132 (190)
T ss_dssp HHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4798888743322 223333333334445555555444444
No 245
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=27.59 E-value=69 Score=24.10 Aligned_cols=36 Identities=6% Similarity=-0.054 Sum_probs=24.0
Q ss_pred cCCeeEEEEccCCCCCcceeEEEE-eCChHHHHHHHHHhC
Q psy16559 145 LGQVTQFKVCCNKSPHLRGNVYVS-YSNEREALRAFYALT 183 (207)
Q Consensus 145 yG~V~~v~V~~n~~~h~~G~VyVk-F~~~e~A~~Ai~~Ln 183 (207)
+=.|.+|.|..+. ..-.|||. |-+.++...++.+|+
T Consensus 43 ~vtVt~V~vS~Dl---~~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDF---SACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTS---CCEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCC---cEEEEEEEecCChhhHHHHHHHHH
Confidence 4588999996643 35789999 766655444555444
No 246
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=25.96 E-value=61 Score=23.71 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=30.7
Q ss_pred CcceeEEEEeCChHHHHHHHHHhCCceeCCe-----EEEEEecCc
Q psy16559 160 HLRGNVYVSYSNEREALRAFYALTGRFYGGK-----QIRGQFCNV 199 (207)
Q Consensus 160 h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR-----~I~ae~~~v 199 (207)
+.-..+||.|.+.++...=.+.++|..|-.. +-.+||+|-
T Consensus 51 ~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~APy 95 (97)
T 2l08_A 51 HLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPF 95 (97)
T ss_dssp SCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEECCC
T ss_pred CcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEecCC
Confidence 3456799999999999999999999877432 444666663
No 247
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=24.21 E-value=1.8e+02 Score=19.98 Aligned_cols=39 Identities=10% Similarity=0.325 Sum_probs=19.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy16559 5 EEWEKEQKRLRDIEEKNRQEKEEREAQEKEFKKSIEDFIEG 45 (207)
Q Consensus 5 ~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 45 (207)
.+|.+.|...=+++. .+.++.+++.+.+--+.++++-.|
T Consensus 12 r~WRE~~~~~i~erd--~~~~~~k~e~~~~A~k~iddfY~~ 50 (70)
T 1xi4_J 12 RKWREEQTERLEALD--ANSRKQEAEWKEKAIKELDEWYAR 50 (70)
T ss_pred HHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 479888774433332 233334444444444555555444
No 248
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=23.81 E-value=92 Score=20.50 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=30.2
Q ss_pred CeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEEEec
Q psy16559 147 QVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197 (207)
Q Consensus 147 ~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~ae~~ 197 (207)
.|-.|.|.++ +-||.-. .+.|..+++.|++-++.|+.+.++..
T Consensus 32 ~IG~I~i~d~-------~s~v~v~-~~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 32 DIGIITIMDN-------ASYVEIL-NGKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp GEEEEEECSS-------CEEEEEC-TTCHHHHHHHHTTCCC---CCCEEEC
T ss_pred hccEEEEeCC-------cEEEEEC-HHHHHHHHHHhccccCcCceEEEEEC
Confidence 4677888654 4677664 44588999999999999999988754
No 249
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.60 E-value=86 Score=23.27 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=28.9
Q ss_pred cCCeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCCceeCCeEEEE
Q psy16559 145 LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRG 194 (207)
Q Consensus 145 yG~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnGR~f~GR~I~a 194 (207)
=|.|..|.... +-+.|.|.+.+.|++.++.= --.+.|-+|.+
T Consensus 37 GG~V~~v~~~~-------~~AvItF~d~~va~rVL~k~-~H~L~~~~LsV 78 (104)
T 2dhx_A 37 GGPVLSWQRLG-------CGGVLTFREPADAERVLAQA-DHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEEEET-------TEEEEEESSHHHHHHHHTCS-CCBSSSSBCEE
T ss_pred CceeeEEEEcC-------CcEEEEEcChHHHHHHhcCC-cceecCeEEEE
Confidence 36888888743 55899999999999888761 22333444444
No 250
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=21.52 E-value=2e+02 Score=23.77 Aligned_cols=10 Identities=30% Similarity=0.896 Sum_probs=7.2
Q ss_pred HHHHHHHHhH
Q psy16559 5 EEWEKEQKRL 14 (207)
Q Consensus 5 ~e~e~~~~~~ 14 (207)
.+|.++|++.
T Consensus 103 RkWREEq~kR 112 (205)
T 3lvh_D 103 RKWREEQRKR 112 (205)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHHH
Confidence 4798888843
No 251
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=20.97 E-value=30 Score=22.75 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=14.2
Q ss_pred CCCceEEeCCCcCccccC
Q psy16559 90 SVSKTLLLNNFFTHLSMD 107 (207)
Q Consensus 90 ~~S~tllL~NMf~~p~~~ 107 (207)
+.|..-+|.|||+.|.-.
T Consensus 27 t~s~ipilgn~fs~pawi 44 (57)
T 1b35_D 27 TLSHIPVLGNIFSTPAWI 44 (57)
T ss_dssp CTTCCCCSCCSSSSCTTC
T ss_pred hhhccccccccccchHHH
Confidence 467777899999998743
No 252
>1k4n_A Protein EC4020, protein YECM; structural genomics, A NEW fold of protein, PSI, protein structure initiative; 1.60A {Escherichia coli} SCOP: d.32.1.5
Probab=20.38 E-value=3.5e+02 Score=22.03 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=48.1
Q ss_pred hHHHHHHHHhHHHHHHHHHHhcC-CeeEEEEccCCCCCcceeEEEEeCChHHHHHHHHHhCC-------ceeCCeEEEE
Q psy16559 124 ETEMHKYFVEFYDDVLPELRSLG-QVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTG-------RFYGGKQIRG 194 (207)
Q Consensus 124 ~eel~~~FdeFyeDV~~Ec~kyG-~V~~v~V~~n~~~h~~G~VyVkF~~~e~A~~Ai~~LnG-------R~f~GR~I~a 194 (207)
..++..++..|-..|..-+...| .+..+.+ -.+-++-.+.+.|++..+.|-. -..+||+|..
T Consensus 14 ~~~l~~dl~~F~~ki~~l~~~Lgldl~~~~~---------DHIalRvn~~~~Ae~~~~~l~~~G~llSen~INGRPI~l 83 (192)
T 1k4n_A 14 LQDIASDLPRFIHALDELSRRLGLNITPLTA---------DHISLRCHQNATAERWRRGFEQCGELLSENMINGRPICL 83 (192)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTCCCTTCEE---------EEEEEECSCHHHHHHHHHHHTTTEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhccC---------cEEEEecCCHHHHHHHHHHHHHhchhhhccccCCeeEEE
Confidence 36788889999999999888888 5544443 3577888999999999888764 4678998854
Done!