Your job contains 1 sequence.
>psy16559
LLIQEEWEKEQKRLRDIEEKNRQEKEEREAQEKEFKKSIEDFIEGVCNELPDGFRTNVET
KPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINL
EFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFY
ALTGRFYGGKQIRGQFCNVPLWSKAMC
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy16559
(207 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NHR6 - symbol:ZRSR2 "Uncharacterized protein"... 439 2.2e-41 1
UNIPROTKB|F1PIC2 - symbol:F1PIC2 "Uncharacterized protein... 428 3.3e-40 1
UNIPROTKB|G3MYL6 - symbol:ZRSR2Y "Uncharacterized protein... 426 5.3e-40 1
UNIPROTKB|F1N5D0 - symbol:ZRSR2 "Uncharacterized protein"... 425 6.8e-40 1
UNIPROTKB|I3LF64 - symbol:ZRSR2 "Uncharacterized protein"... 424 8.7e-40 1
UNIPROTKB|Q15696 - symbol:ZRSR2 "U2 small nuclear ribonuc... 417 4.8e-39 1
RGD|1559763 - symbol:Zrsr2 "zinc finger (CCCH type), RNA ... 416 6.1e-39 1
MGI|MGI:103287 - symbol:Zrsr2 "zinc finger (CCCH type), R... 415 7.8e-39 1
UNIPROTKB|Q15695 - symbol:ZRSR1 "U2 small nuclear ribonuc... 413 1.3e-38 1
ZFIN|ZDB-GENE-030131-1495 - symbol:zrsr2 "zinc finger (CC... 414 2.2e-38 1
RGD|1561824 - symbol:Zrsr1 "zinc finger (CCCH type), RNA ... 406 7.0e-38 1
MGI|MGI:98885 - symbol:Zrsr1 "zinc finger (CCCH type), RN... 401 2.4e-37 1
UNIPROTKB|F1PT19 - symbol:F1PT19 "Uncharacterized protein... 374 3.1e-37 2
UNIPROTKB|I3LMZ7 - symbol:LOC100624937 "Uncharacterized p... 392 2.1e-36 1
FB|FBgn0031628 - symbol:CG3294 species:7227 "Drosophila m... 318 1.5e-28 1
TAIR|locus:2012843 - symbol:AT1G10320 species:3702 "Arabi... 317 1.9e-27 1
TAIR|locus:2165447 - symbol:U2AF35B species:3702 "Arabido... 282 9.7e-25 1
DICTYBASE|DDB_G0285077 - symbol:u2af1 "CCHC-type zinc fin... 282 2.5e-24 1
TAIR|locus:2196929 - symbol:ATU2AF35A species:3702 "Arabi... 277 3.3e-24 1
GENEDB_PFALCIPARUM|PF11_0200 - symbol:PF11_0200 "U2 snRNP... 256 5.5e-22 1
UNIPROTKB|Q8IIH4 - symbol:PF11_0200 "U2 snRNP auxiliary f... 256 5.5e-22 1
FB|FBgn0017457 - symbol:U2af38 "U2 small nuclear riboprot... 254 9.0e-22 1
UNIPROTKB|F1PUP0 - symbol:U2AF1 "Uncharacterized protein"... 245 8.0e-21 1
WB|WBGene00006698 - symbol:uaf-2 species:6239 "Caenorhabd... 245 8.0e-21 1
ASPGD|ASPL0000060533 - symbol:AN9362 species:162425 "Emer... 244 1.0e-20 1
UNIPROTKB|Q98SE2 - symbol:U2AF1 "U2snRNP auxiliary factor... 241 2.1e-20 1
UNIPROTKB|A1A4K8 - symbol:U2AF1 "Splicing factor U2AF 35 ... 241 2.1e-20 1
UNIPROTKB|J9P492 - symbol:U2AF1 "Uncharacterized protein"... 241 2.1e-20 1
UNIPROTKB|Q01081 - symbol:U2AF1 "Splicing factor U2AF 35 ... 241 2.1e-20 1
MGI|MGI:98884 - symbol:U2af1 "U2 small nuclear ribonucleo... 241 2.1e-20 1
ZFIN|ZDB-GENE-020419-1 - symbol:u2af1 "U2(RNU2) small nuc... 238 4.4e-20 1
UNIPROTKB|Q3T127 - symbol:U2AF1L4 "Splicing factor U2AF 2... 232 1.9e-19 1
UNIPROTKB|F1PU17 - symbol:U2AF1L4 "Uncharacterized protei... 231 2.5e-19 1
UNIPROTKB|F1RM65 - symbol:U2AF1L4 "Uncharacterized protei... 231 2.5e-19 1
UNIPROTKB|G4MRL7 - symbol:MGG_09948 "Splicing factor U2AF... 231 2.5e-19 1
MGI|MGI:2678374 - symbol:U2af1l4 "U2 small nuclear RNA au... 231 2.5e-19 1
RGD|1305600 - symbol:U2af1l4 "U2 small nuclear RNA auxili... 231 2.5e-19 1
UNIPROTKB|Q8WU68 - symbol:U2AF1L4 "Splicing factor U2AF 2... 230 3.1e-19 1
POMBASE|SPAP8A3.06 - symbol:SPAP8A3.06 "U2AF small subuni... 227 6.5e-19 1
CGD|CAL0004873 - symbol:TRY2 species:5476 "Candida albica... 136 1.6e-18 2
UNIPROTKB|Q59LX5 - symbol:UAF21 "Potential spliceosomal U... 136 1.6e-18 2
CGD|CAL0000603 - symbol:orf19.53 species:5476 "Candida al... 126 6.1e-16 2
TAIR|locus:1006230269 - symbol:AT3G44785 species:3702 "Ar... 126 3.3e-08 1
UNIPROTKB|Q29350 - symbol:U2AF1 "Splicing factor U2AF 35 ... 120 1.4e-07 1
UNIPROTKB|Q98TR0 - symbol:U2AF1 "U2snRNP auxiliary factor... 105 7.3e-06 1
GENEDB_PFALCIPARUM|MAL13P1.120 - symbol:MAL13P1.120 "spli... 125 1.5e-05 1
UNIPROTKB|Q8IE99 - symbol:MAL13P1.120 "Splicing factor, p... 125 1.5e-05 1
WB|WBGene00010233 - symbol:F58B3.7 species:6239 "Caenorha... 111 0.00030 1
>UNIPROTKB|F1NHR6 [details] [associations]
symbol:ZRSR2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 PANTHER:PTHR12620 GeneTree:ENSGT00530000063193
OMA:EDAFIEE EMBL:AADN02011332 IPI:IPI00585296
Ensembl:ENSGALT00000026711 Uniprot:F1NHR6
Length = 459
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 84/206 (40%), Positives = 120/206 (58%)
Query: 3 IQEEWEKEQKRLRDIXXXXXXXXXXXXXXXXXXXXSIEDFIE-GVCNELPDGFRTNVETK 61
I+EEWE++Q++ R++ E +E GV P+ N+ T+
Sbjct: 95 IKEEWEEQQRKEREVAQQKQQEKREREAAVQKMLDQAESQLENGVTWHNPEP-PENIGTE 153
Query: 62 PDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLE 121
D+ CPFY K G+CRF D CSR H P+ SKTLL+ F M+ +YDTD +LE
Sbjct: 154 KDRANCPFYIKTGSCRFGDRCSRKHNYPTSSKTLLVRGMFITFGMEQCRRDDYDTDASLE 213
Query: 122 FDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYA 181
+ + E ++ F+EFY+DVLPE +++G+V QFKV CN PHLRGNVYV Y E++ A
Sbjct: 214 YSDEETYQQFLEFYEDVLPEFQNVGKVVQFKVSCNYEPHLRGNVYVQYQTEKDCQAALAL 273
Query: 182 LTGRFYGGKQIRGQFCNVPLWSKAMC 207
+GR+Y G+Q+ +FC V W A+C
Sbjct: 274 FSGRWYAGRQLHCEFCPVTRWKTAIC 299
>UNIPROTKB|F1PIC2 [details] [associations]
symbol:F1PIC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 PANTHER:PTHR12620 GeneTree:ENSGT00530000063193
OMA:EDAFIEE EMBL:AAEX03026161 Ensembl:ENSCAFT00000019389
Uniprot:F1PIC2
Length = 455
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 86/207 (41%), Positives = 119/207 (57%)
Query: 3 IQEEWEKEQKRLRDIXXXXXXXXXXXXXXXXXXXXSIEDFIE-GVCNELPDG-FRTNVET 60
++EEWE++Q+R R+ E+ +E G + P+ +
Sbjct: 106 LKEEWEEQQRREREEEEQKLQEKREREEAVQKMLEQAENELENGATWQNPEPPIDLRIME 165
Query: 61 KPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINL 120
K D+ CPFYSK GACRF D CSR H PS S TLL+ + FT M+ +YD D +L
Sbjct: 166 K-DRANCPFYSKTGACRFGDRCSRKHNFPSSSPTLLIKSMFTTFGMEQCRRDDYDPDASL 224
Query: 121 EFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFY 180
E+ E E ++ F++FYDDVLPE +++G+V QFKV CN PHLRGNVYV Y +E E A
Sbjct: 225 EYSEEETYQQFLDFYDDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALS 284
Query: 181 ALTGRFYGGKQIRGQFCNVPLWSKAMC 207
GR+Y G+Q++ +FC V W A+C
Sbjct: 285 LFNGRWYAGRQLQCEFCPVTRWKMAIC 311
>UNIPROTKB|G3MYL6 [details] [associations]
symbol:ZRSR2Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
PANTHER:PTHR12620 GeneTree:ENSGT00530000063193 EMBL:DAAA02075512
Ensembl:ENSBTAT00000066104 Uniprot:G3MYL6
Length = 439
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 85/207 (41%), Positives = 119/207 (57%)
Query: 3 IQEEWEKEQKRLRDIXXXXXXXXXXXXXXXXXXXXSIEDFIE-GVCNELPDG-FRTNVET 60
++E+WE+ Q+R R+ E+ +E G P+ +
Sbjct: 94 LKEKWEEHQRREREEKEQKQQGKREEEEPVQKMLKQAENELESGTIWHNPEPPMEIRIME 153
Query: 61 KPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINL 120
K D+ CPFYSK GACRF D CSR H P+ S TLL+ + FT M+ +YD D NL
Sbjct: 154 K-DRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCGRDDYDPDANL 212
Query: 121 EFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFY 180
E+ E E+++ F++FYDDVLPE +++G+V QFKV CN PHLRGNVYV Y +E E A
Sbjct: 213 EYSEEEIYQQFLDFYDDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALS 272
Query: 181 ALTGRFYGGKQIRGQFCNVPLWSKAMC 207
GR+Y G+Q++ +FC V W+ A+C
Sbjct: 273 LFNGRWYAGRQLQCEFCPVTQWNMAIC 299
>UNIPROTKB|F1N5D0 [details] [associations]
symbol:ZRSR2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
PANTHER:PTHR12620 GeneTree:ENSGT00530000063193 OMA:EDAFIEE
EMBL:DAAA02074879 IPI:IPI01017474 Ensembl:ENSBTAT00000027211
Uniprot:F1N5D0
Length = 474
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 85/207 (41%), Positives = 119/207 (57%)
Query: 3 IQEEWEKEQKRLRDIXXXXXXXXXXXXXXXXXXXXSIEDFIE-GVCNELPDG-FRTNVET 60
++EEWE++Q++ R+ E+ +E G + P+ V
Sbjct: 116 LKEEWEEQQRKEREEEQQKLQEKKEREEAVQKMLEQAENELENGATWQNPEPPMELRVME 175
Query: 61 KPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINL 120
K D+ CPFYSK GACRF D CSR H P+ S TLL+ + FT M+ +YD D +L
Sbjct: 176 K-DRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASL 234
Query: 121 EFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFY 180
E+ E E ++ F++FYDDVLPE +++G+V QFKV CN PHLRGNVYV Y +E E A
Sbjct: 235 EYSEEETYQQFLDFYDDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALS 294
Query: 181 ALTGRFYGGKQIRGQFCNVPLWSKAMC 207
GR+Y G+Q++ +FC V W A+C
Sbjct: 295 LFNGRWYAGRQLQCEFCPVTRWKMAIC 321
>UNIPROTKB|I3LF64 [details] [associations]
symbol:ZRSR2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
PANTHER:PTHR12620 GeneTree:ENSGT00530000063193 OMA:EDAFIEE
EMBL:FP102132 Ensembl:ENSSSCT00000028847 Uniprot:I3LF64
Length = 479
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 84/207 (40%), Positives = 120/207 (57%)
Query: 3 IQEEWEKEQKRLRDIXXXXXXXXXXXXXXXXXXXXSIEDFIE-GVCNELPDGFRTNVET- 60
++EEWE++Q++ R+ E+ +E G + P+ T +
Sbjct: 114 LKEEWEEQQRKEREEEQQKLQEKKEREEAVQKMLEQAENELENGATWQNPEP-PTELRIM 172
Query: 61 KPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINL 120
+ D+ CPFYSK GACRF D CSR H P+ S TLL+ + FT M+ +YD D +L
Sbjct: 173 EKDRANCPFYSKTGACRFGDRCSRKHNFPASSPTLLIKSMFTTFGMEQCRRDDYDPDASL 232
Query: 121 EFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFY 180
E+ E E ++ F++FYDDVLPE +++G+V QFKV CN PHLRGNVYV Y +E E A
Sbjct: 233 EYSEEETYQQFLDFYDDVLPEFKNVGKVVQFKVSCNLEPHLRGNVYVQYQSEEECQAALA 292
Query: 181 ALTGRFYGGKQIRGQFCNVPLWSKAMC 207
GR+Y G+Q++ +FC V W A+C
Sbjct: 293 LFNGRWYAGRQLQCEFCPVTRWKMAIC 319
>UNIPROTKB|Q15696 [details] [associations]
symbol:ZRSR2 "U2 small nuclear ribonucleoprotein auxiliary
factor 35 kDa subunit-related protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0030628 "pre-mRNA 3'-splice
site binding" evidence=IDA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IDA] [GO:0000245 "spliceosomal complex assembly"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IC] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0000245 eggNOG:NOG304335
PANTHER:PTHR12620 GO:GO:0005689 GO:GO:0030628 HOVERGEN:HBG054605
HPA:HPA047500 HOGENOM:HOG000049279 OrthoDB:EOG4CNQRM EMBL:D49677
EMBL:AC004106 EMBL:AC096510 EMBL:BC113454 EMBL:BC113480
IPI:IPI00018954 RefSeq:NP_005080.1 UniGene:Hs.171909
ProteinModelPortal:Q15696 SMR:Q15696 STRING:Q15696
PhosphoSite:Q15696 DMDM:2833266 PaxDb:Q15696 PRIDE:Q15696
DNASU:8233 Ensembl:ENST00000307771 GeneID:8233 KEGG:hsa:8233
UCSC:uc004cxg.4 CTD:8233 GeneCards:GC0XP015808 H-InvDB:HIX0017758
HGNC:HGNC:23019 MIM:300028 neXtProt:NX_Q15696 PharmGKB:PA162410930
InParanoid:Q15696 OMA:EDAFIEE PhylomeDB:Q15696 ChiTaRS:ZRSR2
GenomeRNAi:8233 NextBio:30981 ArrayExpress:Q15696 Bgee:Q15696
CleanEx:HS_ZRSR2 Genevestigator:Q15696 GermOnline:ENSG00000169249
Uniprot:Q15696
Length = 482
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 85/209 (40%), Positives = 120/209 (57%)
Query: 3 IQEEWEKEQKRLRDIXXXXXXXXXXXXXXXXXXXXSIEDFIE-GVC--N-ELPDGFRTNV 58
++E+WE++Q++ R+ E+ +E G N E P FR
Sbjct: 107 LKEQWEEQQRKEREEEEQKRQEKKEKEEALQKMLDQAENELENGTTWQNPEPPVDFRV-- 164
Query: 59 ETKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDI 118
+ D+ CPFYSK GACRF D CSR H P+ S TLL+ + FT M+ +YD D
Sbjct: 165 -MEKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDA 223
Query: 119 NLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+LE+ E E ++ F++FY+DVLPE +++G+V QFKV CN PHLRGNVYV Y +E E A
Sbjct: 224 SLEYSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAA 283
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
GR+Y G+Q++ +FC V W A+C
Sbjct: 284 LSLFNGRWYAGRQLQCEFCPVTRWKMAIC 312
>RGD|1559763 [details] [associations]
symbol:Zrsr2 "zinc finger (CCCH type), RNA binding motif and
serine/arginine rich 2" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000245
"spliceosomal complex assembly" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0030628 "pre-mRNA 3'-splice
site binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
RGD:1559763 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 PANTHER:PTHR12620
GeneTree:ENSGT00530000063193 OrthoDB:EOG4CNQRM CTD:8233
IPI:IPI00358500 RefSeq:XP_001067753.2 RefSeq:XP_217612.5
UniGene:Rn.26786 Ensembl:ENSRNOT00000045300 GeneID:302670
KEGG:rno:302670 UCSC:RGD:1559763 NextBio:649974 Uniprot:D3ZHQ8
Length = 541
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 83/207 (40%), Positives = 120/207 (57%)
Query: 3 IQEEWEKEQKRLRDIXXXXXXXXXXXXXXXXXXXXSIEDFIE-GVCNELPDGFRTNVET- 60
++ EWE++Q++ R+ E+ +E G + P+ T++
Sbjct: 107 LKAEWEEQQRKEREEEEQKQQEKREREEAAQKRLDQAENELENGGTWQNPEP-PTDIRVL 165
Query: 61 KPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINL 120
+ D+ CPFYSK GACRF D CSR H P+ S TLL+ + FT M+ +YD D +L
Sbjct: 166 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDSSL 225
Query: 121 EFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFY 180
E+ E E ++ F++FY DVLPE +S+G+V QFKV CN PHLRGNVYV Y +E + AF
Sbjct: 226 EYSEEETYQQFLDFYYDVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFS 285
Query: 181 ALTGRFYGGKQIRGQFCNVPLWSKAMC 207
GR+Y G+Q++ +FC V W A+C
Sbjct: 286 VFNGRWYAGRQLQCEFCPVTRWKMAIC 312
>MGI|MGI:103287 [details] [associations]
symbol:Zrsr2 "zinc finger (CCCH type), RNA binding motif and
serine/arginine rich 2" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0030628 "pre-mRNA
3'-splice site binding" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
MGI:MGI:103287 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0000245 eggNOG:NOG304335
PANTHER:PTHR12620 GO:GO:0005689 GO:GO:0030628 HOVERGEN:HBG054605
HOGENOM:HOG000049279 ChiTaRS:ZRSR2 EMBL:D45205 IPI:IPI00828580
PIR:A57120 UniGene:Mm.426178 ProteinModelPortal:Q62377 SMR:Q62377
PhosphoSite:Q62377 PRIDE:Q62377 NextBio:302143
Genevestigator:Q62377 GermOnline:ENSMUSG00000031370 Uniprot:Q62377
Length = 462
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 83/206 (40%), Positives = 117/206 (56%)
Query: 3 IQEEWEKEQKRLRDIXXXXXXXXXXXXXXXXXXXXSIEDFIE-GVCNELPDGFRTNVETK 61
++ EWE++Q++ R+ E+ +E G + P+ +
Sbjct: 111 LKAEWEEQQRKEREEEEQKRQEKREREEAVQKMLDQAENELENGGTWQNPEPPMDIRVLE 170
Query: 62 PDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLE 121
D+ CPFYSK GACRF D CSR H P+ S TLL+ FT M+ +YD D +LE
Sbjct: 171 KDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKGMFTTFGMEQCRRDDYDPDSSLE 230
Query: 122 FDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYA 181
F E E+++ F++FY DVLPE +S+G+V QFKV CN PHLRGNVYV Y +E + AF
Sbjct: 231 FSEEEIYQQFLDFYYDVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSV 290
Query: 182 LTGRFYGGKQIRGQFCNVPLWSKAMC 207
GR+Y G+Q++ +FC V W A+C
Sbjct: 291 FNGRWYAGRQLQCEFCPVTRWKMAIC 316
>UNIPROTKB|Q15695 [details] [associations]
symbol:ZRSR1 "U2 small nuclear ribonucleoprotein auxiliary
factor 35 kDa subunit-related protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 eggNOG:NOG304335 PANTHER:PTHR12620 UniGene:Hs.637001
HOVERGEN:HBG054605 EMBL:D49676 EMBL:U51224 EMBL:AK313576
IPI:IPI00018952 ProteinModelPortal:Q15695 SMR:Q15695 STRING:Q15695
PhosphoSite:Q15695 DMDM:2833265 PaxDb:Q15695 PRIDE:Q15695
Ensembl:ENST00000391338 UCSC:uc021ycm.1 GeneCards:GC05P112228
HGNC:HGNC:12456 HPA:HPA047500 MIM:601079 neXtProt:NX_Q15695
PharmGKB:PA37106 HOGENOM:HOG000049279 InParanoid:Q15695 OMA:HSSKSHE
OrthoDB:EOG4CNQRM PhylomeDB:Q15695 Genevestigator:Q15695
GermOnline:ENSG00000174044 Uniprot:Q15695
Length = 479
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 82/209 (39%), Positives = 118/209 (56%)
Query: 3 IQEEWEKEQKRLRDIXXXXXXXXXXXXXXXXXXXXSIEDFIEGVCN----ELPDGFRTNV 58
++E+W+++Q++ R+ E+ +E E P FR
Sbjct: 112 LKEQWKEQQRKEREEEEQKQQEKKEKEEAVQKMLDQAENDLENSTTWQNPEPPVDFRV-- 169
Query: 59 ETKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDI 118
+ D+ CPFYSK GACRF D CSR H P+ S TLL+ + FT M+ +YD D
Sbjct: 170 -MEKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDA 228
Query: 119 NLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+LE+ E E ++ F++FY+DVLPE +++G+V QFKV CN PHLRGNVYV Y +E E A
Sbjct: 229 SLEYSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAA 288
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
GR+Y G+Q++ +FC V W A+C
Sbjct: 289 LSLFNGRWYAGRQLQCEFCPVTRWKMAIC 317
>ZFIN|ZDB-GENE-030131-1495 [details] [associations]
symbol:zrsr2 "zinc finger (CCCH type), RNA-binding
motif and serine/arginine rich 2" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
ZFIN:ZDB-GENE-030131-1495 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 PANTHER:PTHR12620
GeneTree:ENSGT00530000063193 CTD:8233 EMBL:CR848805 IPI:IPI00899441
RefSeq:XP_001920562.1 UniGene:Dr.116918 UniGene:Dr.77318
Ensembl:ENSDART00000081319 GeneID:100005490 KEGG:dre:100005490
NextBio:20786710 Uniprot:E7F2A1
Length = 635
Score = 414 (150.8 bits), Expect = 2.2e-38, P = 2.2e-38
Identities = 81/206 (39%), Positives = 116/206 (56%)
Query: 3 IQEEWEKEQKRLRDIXXXXXXXXXXXXXXXXXXXXSIEDFIE-GVCNELPDGFRTNVETK 61
I+EEWE++Q++ ++ E +E G + PD + + T+
Sbjct: 121 IKEEWEEQQRKDKEEREHKEQEKREREEAVQKMLDQAESQLENGGPWKNPDAPK-DYGTE 179
Query: 62 PDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLE 121
DK CPF+ K GACRF D CSR H P+ S TL++ F M+ +YDTD +LE
Sbjct: 180 KDKANCPFFLKTGACRFGDRCSRKHDHPASSCTLMVRGMFVSFGMEQSRRDDYDTDASLE 239
Query: 122 FDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYA 181
+ E E+H+ F++FY+D LPE ++ G+V QFKV CN PHLRGNVYV Y E + AF
Sbjct: 240 YSEEELHQQFLDFYEDALPEFKNAGRVVQFKVSCNFEPHLRGNVYVQYETEEQCKEAFVM 299
Query: 182 LTGRFYGGKQIRGQFCNVPLWSKAMC 207
GR+Y G+Q++ +F V W A+C
Sbjct: 300 FNGRWYAGRQLQCEFSPVTRWKTAIC 325
>RGD|1561824 [details] [associations]
symbol:Zrsr1 "zinc finger (CCCH type), RNA binding motif and
serine/arginine rich 1" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 RGD:1561824 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:NOG304335 PANTHER:PTHR12620 GeneTree:ENSGT00530000063193
HOVERGEN:HBG054605 HOGENOM:HOG000049279 OrthoDB:EOG4CNQRM CTD:7310
OMA:EDAFIEE EMBL:BC086322 IPI:IPI00205826 RefSeq:NP_001017504.1
UniGene:Rn.204453 Ensembl:ENSRNOT00000012767 GeneID:498425
KEGG:rno:498425 UCSC:RGD:1561824 InParanoid:Q5RK33 NextBio:699756
Genevestigator:Q5RK33 Uniprot:Q5RK33
Length = 428
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 84/207 (40%), Positives = 116/207 (56%)
Query: 3 IQEEWEKEQKRLRDIXXXXXXXXXXXXXXXXXXXXSIEDFIEGVCN--ELPDGFRTNVET 60
I+ EWE++QK+ R+ E+ EG E P R +
Sbjct: 104 IKAEWEEQQKKQREEEEQKLQEKKEREEAVQKMLDQAEN--EGTWQNPEPPKDLRLE-KY 160
Query: 61 KPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINL 120
+P CPFY+K GACRF + CSR H P+ S TLL+ + FT M+ +YD+D NL
Sbjct: 161 RPS---CPFYNKTGACRFGNRCSRKHDFPTSSPTLLVKSMFTTFGMEQCRRDDYDSDANL 217
Query: 121 EFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFY 180
E+ E E ++ F++FY DVLPE +++G+V QFKV CN PHLRGNVYV Y +E E A
Sbjct: 218 EYSEEETYQQFLDFYHDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALS 277
Query: 181 ALTGRFYGGKQIRGQFCNVPLWSKAMC 207
GR+Y G+Q++ +FC V W A+C
Sbjct: 278 LFNGRWYAGRQLQCEFCPVTRWKVAIC 304
>MGI|MGI:98885 [details] [associations]
symbol:Zrsr1 "zinc finger (CCCH type), RNA binding motif and
serine/arginine rich 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 MGI:MGI:98885 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:NOG304335 PANTHER:PTHR12620
CleanEx:MM_SP2 HOVERGEN:HBG054605 HOGENOM:HOG000049279
OrthoDB:EOG4CNQRM EMBL:D17407 EMBL:S69507 EMBL:D26474
IPI:IPI00137872 PIR:S41485 RefSeq:NP_035793.1 UniGene:Mm.29542
ProteinModelPortal:Q64707 SMR:Q64707 PhosphoSite:Q64707
PRIDE:Q64707 Ensembl:ENSMUST00000049506 GeneID:22183 KEGG:mmu:22183
CTD:7310 InParanoid:Q64707 OMA:AENERIW NextBio:302139 Bgee:Q64707
Genevestigator:Q64707 GermOnline:ENSMUSG00000044068 Uniprot:Q64707
Length = 428
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 82/205 (40%), Positives = 114/205 (55%)
Query: 3 IQEEWEKEQKRLRDIXXXXXXXXXXXXXXXXXXXXSIEDFIEGVCNELPDGFRTNVETKP 62
I+ EWE++QK+ R+ E+ E P R + +P
Sbjct: 103 IKAEWEEQQKKQREEEEQKLQEKREREEAVQKMLDQAENERIWQNPEPPKDLRLE-KYRP 161
Query: 63 DKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEF 122
CPFY+K GACRF + CSR H P+ S TLL+ + FT M+ +YD+D NLE+
Sbjct: 162 S---CPFYNKTGACRFGNRCSRKHDFPTSSPTLLVKSMFTTFGMEQCRRDDYDSDANLEY 218
Query: 123 DETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYAL 182
E E ++ F++FY DVLPE +++G+V QFKV CN PHLRGNVYV Y +E E A
Sbjct: 219 SEEETYQQFLDFYHDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLF 278
Query: 183 TGRFYGGKQIRGQFCNVPLWSKAMC 207
GR+Y G+Q++ +FC V W A+C
Sbjct: 279 NGRWYAGRQLQCEFCPVTRWKVAIC 303
>UNIPROTKB|F1PT19 [details] [associations]
symbol:F1PT19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 PANTHER:PTHR12620 GeneTree:ENSGT00530000063193
EMBL:AAEX03012736 EMBL:AAEX03012735 Ensembl:ENSCAFT00000038958
OMA:REXLENG Uniprot:F1PT19
Length = 430
Score = 374 (136.7 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 74/159 (46%), Positives = 93/159 (58%)
Query: 49 ELPDGFRTNVETKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDN 108
E P G R + D CPFY K GACRF D CSR H PS S TLL+ + FT M+
Sbjct: 157 EPPTGLRAPERDRAD---CPFYRKTGACRFGDRCSRRHDLPSSSPTLLVRSMFTTFGMEQ 213
Query: 109 KSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVS 168
+YD D LE E + +++F FYDDVLPE R++G V QFKV N PHLRGNVYV
Sbjct: 214 CRRDDYDPDAGLEDSEEDTYQHFRAFYDDVLPEFRAVGTVVQFKVSRNLEPHLRGNVYVQ 273
Query: 169 YSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
Y +E E A GR+Y G++++ + C V W A+C
Sbjct: 274 YRSEAECRAALSLFNGRWYAGRRLQCELCPVTRWKAAIC 312
Score = 42 (19.8 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 3 IQEEWEKEQKRLR 15
++EEW+ +Q+R R
Sbjct: 105 LREEWDAQQRRQR 117
>UNIPROTKB|I3LMZ7 [details] [associations]
symbol:LOC100624937 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
PANTHER:PTHR12620 GeneTree:ENSGT00530000063193 EMBL:FP565155
Ensembl:ENSSSCT00000024533 OMA:VEREACS Uniprot:I3LMZ7
Length = 385
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 81/209 (38%), Positives = 117/209 (55%)
Query: 3 IQEEWEKEQKRLRDIXXXXXXXXXXXXXXXXXXXXSIEDFIE-GVCNELPDGFRTNVET- 60
++EEWE+ ++ R+ + E +E G + P+ T++
Sbjct: 66 LREEWEEHLRKEREEEEQKLHKKREKEEILFLSLNNAEAELENGATWQNPEP-PTDLRMM 124
Query: 61 KPDKELCPFYSKVGACRFFD--HCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDI 118
+ D+ CPFY K GACRF D CSR H P+ S TLL+ + FT M+ +YD D
Sbjct: 125 EKDRAHCPFYIKTGACRFGDKRRCSRKHSFPASSPTLLIKSMFTTFGMEQCRRDDYDPDA 184
Query: 119 NLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+LE+ E E ++ F++FYDDVLPE +++G+V QFKV CN PHLRGNVYV Y +E E A
Sbjct: 185 SLEYSEEETYQQFLDFYDDVLPEFKNVGKVVQFKVSCNLEPHLRGNVYVQYQSEEECQAA 244
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
GR+Y G+Q++ + C V W A+C
Sbjct: 245 LSLFNGRWYAGRQLQCEICPVTQWKMAIC 273
>FB|FBgn0031628 [details] [associations]
symbol:CG3294 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0042060 "wound healing" evidence=IMP]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0042060 GO:GO:0000398 PANTHER:PTHR12620
GeneTree:ENSGT00530000063193 UniGene:Dm.11865 GeneID:33677
KEGG:dme:Dmel_CG3294 FlyBase:FBgn0031628 GenomeRNAi:33677
NextBio:784734 RefSeq:NP_608857.2 ProteinModelPortal:Q9VR26
SMR:Q9VR26 IntAct:Q9VR26 MINT:MINT-825396 STRING:Q9VR26
EnsemblMetazoa:FBtr0077381 UCSC:CG3294-RA InParanoid:Q9VR26
OMA:HKEYASA PhylomeDB:Q9VR26 ArrayExpress:Q9VR26 Bgee:Q9VR26
Uniprot:Q9VR26
Length = 456
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 61/173 (35%), Positives = 99/173 (57%)
Query: 38 SIEDFIEGVCNELPDGFRTNV-ETKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLL 96
S+++++ E P V ET P++ C F+S+ CR+ C+ NH +P + + LL
Sbjct: 140 SMDEYLNNPRIEKPPSHLLRVMETHPEERACEFFSRTNCCRYGHACTFNHRRPMLGRILL 199
Query: 97 LNNFFTHLSMDNKSV-REY-DTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVC 154
+ +FF H + + +EY + +LE E ++ + EF++DV+ ELR G + F+
Sbjct: 200 IRHFFNHSMLQKRCTHKEYASAEEHLELTEQDLRHDYDEFFNDVVEELRKFGTIVNFRTV 259
Query: 155 CNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
N HLRG+V+V Y+NER ALRAF L GR+Y K++ +F N+ W A+C
Sbjct: 260 RNTLEHLRGHVFVEYTNERSALRAFTNLQGRYYASKRLNVEFSNLRTWRGAVC 312
>TAIR|locus:2012843 [details] [associations]
symbol:AT1G10320 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR003954 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00361 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC005489 EMBL:AK226684 IPI:IPI00524917 RefSeq:NP_172503.1
UniGene:At.51551 HSSP:Q01081 ProteinModelPortal:Q9SY74 SMR:Q9SY74
PRIDE:Q9SY74 EnsemblPlants:AT1G10320.1 GeneID:837571
KEGG:ath:AT1G10320 GeneFarm:4542 TAIR:At1g10320 eggNOG:NOG304335
HOGENOM:HOG000083070 InParanoid:Q9SY74 OMA:CSRKHVY PhylomeDB:Q9SY74
ProtClustDB:CLSN2679568 Genevestigator:Q9SY74 PANTHER:PTHR12620
Uniprot:Q9SY74
Length = 757
Score = 317 (116.6 bits), Expect = 1.9e-27, P = 1.9e-27
Identities = 66/170 (38%), Positives = 94/170 (55%)
Query: 38 SIEDFIEGVCNELPDGFRTNVETKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLL 97
S + +E V E+P N T+ DK CPF+ K GACRF CSR H P+ S TLL+
Sbjct: 222 SAQQILESVAQEVP-----NFGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLM 276
Query: 98 NNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNK 157
N + N ++ D LE+ + E + EFY+DV E G++ FKVC N
Sbjct: 277 KNMY------NGPGITWEQDEGLEYTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNG 330
Query: 158 SPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
S HL+GNVYV Y + A+ A+ ++ GR++ GKQ+ +F N+ W A+C
Sbjct: 331 SFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEFVNISRWKVAIC 380
>TAIR|locus:2165447 [details] [associations]
symbol:U2AF35B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0048573
"photoperiodism, flowering" evidence=IMP] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048573
EMBL:AB008264 EMBL:AB007647 HSSP:Q01081 PANTHER:PTHR12620
UniGene:At.8456 eggNOG:NOG323920 HOGENOM:HOG000178619 KO:K12836
OMA:SERHDRD ProtClustDB:CLSN2686618 EMBL:AF409140 EMBL:AY136436
EMBL:BT000219 IPI:IPI00531951 RefSeq:NP_199096.1 RefSeq:NP_974870.1
UniGene:At.25814 ProteinModelPortal:Q9FMY5 SMR:Q9FMY5 IntAct:Q9FMY5
STRING:Q9FMY5 PaxDb:Q9FMY5 PRIDE:Q9FMY5 EnsemblPlants:AT5G42820.1
EnsemblPlants:AT5G42820.2 GeneID:834293 KEGG:ath:AT5G42820
GeneFarm:4540 TAIR:At5g42820 InParanoid:Q9FMY5 PhylomeDB:Q9FMY5
Genevestigator:Q9FMY5 Uniprot:Q9FMY5
Length = 283
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 58/148 (39%), Positives = 81/148 (54%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ D+ CPFY K+GACR D CSR H +P++S TLLL+N + M V +
Sbjct: 11 TEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPL- 69
Query: 120 LEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAF 179
D +++ +F +FY+D+ EL G+V VC N + H+ GNVYV + E A A
Sbjct: 70 ---DPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAAL 126
Query: 180 YALTGRFYGGKQIRGQFCNVPLWSKAMC 207
AL GRFY G+ I F V + +A C
Sbjct: 127 QALQGRFYSGRPIIADFSPVTDFREATC 154
>DICTYBASE|DDB_G0285077 [details] [associations]
symbol:u2af1 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR003954 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00361 dictyBase:DDB_G0285077
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 EMBL:AAFI02000073 GO:GO:0003723 GO:GO:0000398
GO:GO:0005686 PANTHER:PTHR12620 eggNOG:NOG323920 KO:K12836
RefSeq:XP_639991.1 ProteinModelPortal:Q54NS6
EnsemblProtists:DDB0233354 GeneID:8624909 KEGG:ddi:DDB_G0285077
InParanoid:Q54NS6 OMA:DFTEARC Uniprot:Q54NS6
Length = 471
Score = 282 (104.3 bits), Expect = 2.5e-24, P = 2.5e-24
Identities = 60/149 (40%), Positives = 84/149 (56%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDI- 118
T+ D++ CPFY K+GACR D CSR H KP +S+T+LL N + + K++
Sbjct: 11 TEKDQQNCPFYLKIGACRHGDRCSRLHNKPVLSQTILLPNLYQS-PISKKAIEAAGGQAP 69
Query: 119 NLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
NL + E+ ++F EFY+D+ L GQV VC N HL GNVYV Y E +A +
Sbjct: 70 NLS--DAELQQHFDEFYEDIYEGLAKYGQVDLLNVCANLGDHLVGNVYVKYQKEDDANES 127
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L GRFY G+ I +F V +++A C
Sbjct: 128 IKGLKGRFYDGRPIISEFSPVTDFTEARC 156
>TAIR|locus:2196929 [details] [associations]
symbol:ATU2AF35A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0048573
"photoperiodism, flowering" evidence=RCA;IMP] [GO:0007067 "mitosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642
PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC012375 GO:GO:0048573 HSSP:Q01081 PANTHER:PTHR12620
EMBL:AC005916 eggNOG:NOG323920 HOGENOM:HOG000178619 KO:K12836
EMBL:AF409139 EMBL:AF344324 EMBL:AY065202 EMBL:AY090343
EMBL:AY096507 EMBL:AY122894 EMBL:AY088540 IPI:IPI00530007
RefSeq:NP_174086.1 UniGene:At.20200 UniGene:At.63995
UniGene:At.67851 ProteinModelPortal:Q9S709 SMR:Q9S709 STRING:Q9S709
PaxDb:Q9S709 PRIDE:Q9S709 EnsemblPlants:AT1G27650.1 GeneID:839657
KEGG:ath:AT1G27650 GeneFarm:4543 TAIR:At1g27650 InParanoid:Q9S709
OMA:NDNGRKG PhylomeDB:Q9S709 ProtClustDB:CLSN2686618
Genevestigator:Q9S709 Uniprot:Q9S709
Length = 296
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 56/148 (37%), Positives = 82/148 (55%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ D+ CPFY K+GACR D CSR H +P++S TLLL+N + M V D
Sbjct: 11 TEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGV---DAQ-G 66
Query: 120 LEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAF 179
D ++ ++F +F++D+ EL G++ +C N + H+ GNVYV + E +A A
Sbjct: 67 QPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAAL 126
Query: 180 YALTGRFYGGKQIRGQFCNVPLWSKAMC 207
AL GRFY G+ I F V + +A C
Sbjct: 127 QALQGRFYSGRPIIADFSPVTDFREATC 154
>GENEDB_PFALCIPARUM|PF11_0200 [details] [associations]
symbol:PF11_0200 "U2 snRNP auxiliary factor,
small subunit, putative" species:5833 "Plasmodium falciparum"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR003954 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00361 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GO:GO:0005686 HSSP:Q01081 PANTHER:PTHR12620
EMBL:AE014186 HOGENOM:HOG000178619 KO:K12836 RefSeq:XP_001347871.1
ProteinModelPortal:Q8IIH4 IntAct:Q8IIH4 MINT:MINT-1572548
EnsemblProtists:PF11_0200:mRNA GeneID:810747 KEGG:pfa:PF11_0200
EuPathDB:PlasmoDB:PF3D7_1119300 OMA:DFREARC ProtClustDB:CLSZ2733259
Uniprot:Q8IIH4
Length = 294
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 53/152 (34%), Positives = 86/152 (56%)
Query: 58 VETKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTD 117
+ T+ D+ CPF+ K+GACR D CSR+H KP+ ++TL++ + + DN + +
Sbjct: 9 IGTEEDRVNCPFFWKIGACRHGDQCSRSHYKPNCAQTLVIRHMY-----DNPPIAVAIAE 63
Query: 118 INLEFDET--EMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREA 175
+ DE + +F EFY++V EL G++ VC N H+ GNVY+ Y++E A
Sbjct: 64 GQMVEDEVLDKAADHFEEFYEEVFDELMKYGEIEDMVVCDNIGDHIIGNVYIKYTHEDYA 123
Query: 176 LRAFYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
+A L GRFY GK ++ ++ V + +A C
Sbjct: 124 EKAVNELNGRFYAGKPLQIEYTPVTDFREARC 155
>UNIPROTKB|Q8IIH4 [details] [associations]
symbol:PF11_0200 "U2 snRNP auxiliary factor, small subunit,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0005686 "U2
snRNP" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR003954 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00361 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0005686 HSSP:Q01081 PANTHER:PTHR12620 EMBL:AE014186
HOGENOM:HOG000178619 KO:K12836 RefSeq:XP_001347871.1
ProteinModelPortal:Q8IIH4 IntAct:Q8IIH4 MINT:MINT-1572548
EnsemblProtists:PF11_0200:mRNA GeneID:810747 KEGG:pfa:PF11_0200
EuPathDB:PlasmoDB:PF3D7_1119300 OMA:DFREARC ProtClustDB:CLSZ2733259
Uniprot:Q8IIH4
Length = 294
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 53/152 (34%), Positives = 86/152 (56%)
Query: 58 VETKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTD 117
+ T+ D+ CPF+ K+GACR D CSR+H KP+ ++TL++ + + DN + +
Sbjct: 9 IGTEEDRVNCPFFWKIGACRHGDQCSRSHYKPNCAQTLVIRHMY-----DNPPIAVAIAE 63
Query: 118 INLEFDET--EMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREA 175
+ DE + +F EFY++V EL G++ VC N H+ GNVY+ Y++E A
Sbjct: 64 GQMVEDEVLDKAADHFEEFYEEVFDELMKYGEIEDMVVCDNIGDHIIGNVYIKYTHEDYA 123
Query: 176 LRAFYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
+A L GRFY GK ++ ++ V + +A C
Sbjct: 124 EKAVNELNGRFYAGKPLQIEYTPVTDFREARC 155
>FB|FBgn0017457 [details] [associations]
symbol:U2af38 "U2 small nuclear riboprotein auxiliary factor
38" species:7227 "Drosophila melanogaster" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS;IMP] [GO:0005686 "U2
snRNP" evidence=NAS;TAS] [GO:0008187 "poly-pyrimidine tract
binding" evidence=NAS;IDA] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IMP]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0007052
EMBL:AE014134 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398
GO:GO:0005686 PANTHER:PTHR12620 GO:GO:0000381 GO:GO:0008187
eggNOG:NOG323920 GeneTree:ENSGT00530000063193 KO:K12836 OMA:DRGGNND
EMBL:U67066 EMBL:AY058537 PIR:JC6125 RefSeq:NP_477208.1
UniGene:Dm.4117 ProteinModelPortal:Q94535 SMR:Q94535 DIP:DIP-23299N
IntAct:Q94535 MINT:MINT-311934 STRING:Q94535 PaxDb:Q94535
EnsemblMetazoa:FBtr0078133 EnsemblMetazoa:FBtr0333408 GeneID:33201
KEGG:dme:Dmel_CG3582 CTD:33201 FlyBase:FBgn0017457
InParanoid:Q94535 OrthoDB:EOG48GTKF PhylomeDB:Q94535 ChiTaRS:U2af38
GenomeRNAi:33201 NextBio:782394 Bgee:Q94535 GermOnline:CG3582
Uniprot:Q94535
Length = 264
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 55/149 (36%), Positives = 82/149 (55%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H KP+ S+T+LL N + + KS N
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVAN 70
Query: 120 LEFDETEMHKYFVEFYDDVLPELRS-LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ DE EM +++ F++DV E G++ + VC N HL GNVY+ + NE +A +A
Sbjct: 71 VS-DE-EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKA 128
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++GG+ + + V + +A C
Sbjct: 129 ANDLNNRWFGGRPVYSELSPVTDFREACC 157
>UNIPROTKB|F1PUP0 [details] [associations]
symbol:U2AF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 PANTHER:PTHR12620 CTD:7307
GeneTree:ENSGT00530000063193 KO:K12836 EMBL:AAEX03016606
RefSeq:XP_003640135.1 ProteinModelPortal:F1PUP0
Ensembl:ENSCAFT00000016814 GeneID:478422 KEGG:cfa:478422
Uniprot:F1PUP0
Length = 240
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 52/149 (34%), Positives = 81/149 (54%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H KP+ S+T+L+ N + + S + D +
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRN---PQNSAQTADGS-H 66
Query: 120 LEFDETEMHKYFVEFYDDVLPELRS-LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ EM +++ EF+++V E+ G+V + VC N HL GNVYV + E +A +A
Sbjct: 67 CAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKA 126
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++ G+ I + V + +A C
Sbjct: 127 VIDLNNRWFNGQPIHAELSPVTDFREACC 155
>WB|WBGene00006698 [details] [associations]
symbol:uaf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0030628 "pre-mRNA
3'-splice site binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0000166 GO:GO:0046872
GO:GO:0018996 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0040035 HSSP:Q01081 PANTHER:PTHR12620 GO:GO:0030628
EMBL:AL117204 eggNOG:NOG323920 GeneTree:ENSGT00530000063193
HOGENOM:HOG000178619 KO:K12836 PIR:T31503 RefSeq:NP_503036.1
ProteinModelPortal:Q9U2U0 SMR:Q9U2U0 DIP:DIP-26717N IntAct:Q9U2U0
MINT:MINT-1068324 STRING:Q9U2U0 PaxDb:Q9U2U0
EnsemblMetazoa:Y116A8C.35.1 EnsemblMetazoa:Y116A8C.35.2
GeneID:178489 KEGG:cel:CELE_Y116A8C.35 UCSC:Y116A8C.35 CTD:178489
WormBase:Y116A8C.35 InParanoid:Q9U2U0 OMA:XAVSDVE NextBio:901340
Uniprot:Q9U2U0
Length = 285
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 52/149 (34%), Positives = 83/149 (55%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C F+ K GACR D CSR H P+ S T++L NF+ + +D + +D +
Sbjct: 19 TEKDKVNCSFFFKTGACRHGDKCSRAHHTPTFSPTVVLKNFYHNPVVDVRQADAFDK-VG 77
Query: 120 LEFDETEMHKYFVEFYDDVLPEL-RSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
D+ + +YF +FY++V E+ R G+V + VC N H+ GNVYV + E +A +A
Sbjct: 78 KRNDQEQ--RYFDDFYEEVFVEMERKYGEVEEINVCENIGEHMVGNVYVKFMKEEDAEKA 135
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++ G+ I + C V + ++ C
Sbjct: 136 KNDLNNRWFNGQPIYAELCPVTDFRESRC 164
>ASPGD|ASPL0000060533 [details] [associations]
symbol:AN9362 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0000243 "commitment
complex" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000349 "generation of catalytic
spliceosome for first transesterification step" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 GO:GO:0000166
EMBL:BN001308 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AACD01000172 PANTHER:PTHR12620 eggNOG:NOG323920
HOGENOM:HOG000178619 KO:K12836 OrthoDB:EOG476P88 OMA:NDNGRKG
RefSeq:XP_682631.1 ProteinModelPortal:Q5AQR8 STRING:Q5AQR8
EnsemblFungi:CADANIAT00001149 GeneID:2867825 KEGG:ani:AN9362.2
Uniprot:Q5AQR8
Length = 209
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 53/148 (35%), Positives = 81/148 (54%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H+KPS S+T+L+ N + + + D KS
Sbjct: 11 TEQDKVNCSFYYKIGACRHGDRCSRKHVKPSYSQTILMPNMYQNPAYDPKS--------- 61
Query: 120 LEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAF 179
+ + +++ +F FY+DV E+ G++ + VC N + HL GNVY + E +A A
Sbjct: 62 -KMNPSQLQNHFDAFYEDVWCEMCKYGELEELVVCDNNNDHLIGNVYARFKYEEDAQAAC 120
Query: 180 YALTGRFYGGKQIRGQFCNVPLWSKAMC 207
AL R+Y + I + V + +A C
Sbjct: 121 DALNSRWYAARPIYCELSPVTDFREACC 148
>UNIPROTKB|Q98SE2 [details] [associations]
symbol:U2AF1 "U2snRNP auxiliary factor small subunit"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0050733 "RS domain binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0071013 HSSP:Q01081 PANTHER:PTHR12620 CTD:7307
eggNOG:NOG323920 GeneTree:ENSGT00530000063193 HOGENOM:HOG000178619
HOVERGEN:HBG054605 KO:K12836 OMA:DRGGNND OrthoDB:EOG4MSD07
EMBL:AADN02010856 EMBL:AADN02010857 EMBL:AJ291762 EMBL:AJ291763
EMBL:AJ291764 IPI:IPI00603228 RefSeq:NP_989986.2 UniGene:Gga.4951
SMR:Q98SE2 STRING:Q98SE2 Ensembl:ENSGALT00000026115 GeneID:395370
KEGG:gga:395370 InParanoid:Q98SE2 NextBio:20815454 Uniprot:Q98SE2
Length = 237
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 51/149 (34%), Positives = 80/149 (53%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H KP+ S+T+ L N + + ++S +
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSA----DGLR 66
Query: 120 LEFDETEMHKYFVEFYDDVLPELRS-LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ EM +++ EF+++V E+ G+V + VC N HL GNVYV + E +A +A
Sbjct: 67 CAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKA 126
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++ G+ I + V + +A C
Sbjct: 127 VIDLNNRWFNGQPIHAELSPVTDFREACC 155
>UNIPROTKB|A1A4K8 [details] [associations]
symbol:U2AF1 "Splicing factor U2AF 35 kDa subunit"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050733 "RS domain binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0071013 PANTHER:PTHR12620 EMBL:BC126638 IPI:IPI00695600
RefSeq:NP_001073737.1 UniGene:Bt.23539 ProteinModelPortal:A1A4K8
SMR:A1A4K8 STRING:A1A4K8 PRIDE:A1A4K8 Ensembl:ENSBTAT00000015465
GeneID:512680 KEGG:bta:512680 CTD:7307 eggNOG:NOG323920
GeneTree:ENSGT00530000063193 HOGENOM:HOG000178619
HOVERGEN:HBG054605 InParanoid:A1A4K8 KO:K12836 OMA:DRGGNND
OrthoDB:EOG4MSD07 NextBio:20870505 Uniprot:A1A4K8
Length = 237
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 51/149 (34%), Positives = 80/149 (53%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H KP+ S+T+ L N + + ++S +
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSA----DGLR 66
Query: 120 LEFDETEMHKYFVEFYDDVLPELRS-LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ EM +++ EF+++V E+ G+V + VC N HL GNVYV + E +A +A
Sbjct: 67 CAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKA 126
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++ G+ I + V + +A C
Sbjct: 127 VIDLNNRWFNGQPIHAELSPVTDFREACC 155
>UNIPROTKB|J9P492 [details] [associations]
symbol:U2AF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 PANTHER:PTHR12620 CTD:7307
GeneTree:ENSGT00530000063193 KO:K12836 OMA:DRGGNND
EMBL:AAEX03016606 GeneID:478422 KEGG:cfa:478422
RefSeq:XP_003640134.1 ProteinModelPortal:J9P492
Ensembl:ENSCAFT00000047884 Uniprot:J9P492
Length = 240
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 51/149 (34%), Positives = 80/149 (53%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H KP+ S+T+ L N + + ++S +
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSA----DGLR 66
Query: 120 LEFDETEMHKYFVEFYDDVLPELRS-LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ EM +++ EF+++V E+ G+V + VC N HL GNVYV + E +A +A
Sbjct: 67 CAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKA 126
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++ G+ I + V + +A C
Sbjct: 127 VIDLNNRWFNGQPIHAELSPVTDFREACC 155
>UNIPROTKB|Q01081 [details] [associations]
symbol:U2AF1 "Splicing factor U2AF 35 kDa subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0050733 "RS domain
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0015030 "Cajal body" evidence=TAS]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006406 "mRNA
export from nucleus" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0016607 GO:GO:0008270
Reactome:REACT_1675 Gene3D:3.30.70.330 EMBL:CH471079 GO:GO:0003723
GO:GO:0015030 GO:GO:0006406 GO:GO:0000398 GO:GO:0071013
Reactome:REACT_1788 PANTHER:PTHR12620 GO:GO:0006369 GO:GO:0031124
Reactome:REACT_78 EMBL:AP001631 EMBL:AP001748 CTD:7307
eggNOG:NOG323920 HOGENOM:HOG000178619 HOVERGEN:HBG054605 KO:K12836
OMA:DRGGNND OrthoDB:EOG4MSD07 EMBL:M96982 EMBL:AJ627978
EMBL:AF370386 EMBL:BC001177 EMBL:BC001923 IPI:IPI00005613
PIR:A46179 RefSeq:NP_001020374.1 RefSeq:NP_001020375.1
RefSeq:NP_006749.1 UniGene:Hs.365116 PDB:1JMT PDBsum:1JMT
ProteinModelPortal:Q01081 SMR:Q01081 DIP:DIP-1108N IntAct:Q01081
MINT:MINT-3024108 STRING:Q01081 PhosphoSite:Q01081 DMDM:267187
PaxDb:Q01081 PeptideAtlas:Q01081 PRIDE:Q01081 DNASU:7307
Ensembl:ENST00000291552 Ensembl:ENST00000380276
Ensembl:ENST00000398137 Ensembl:ENST00000459639
Ensembl:ENST00000464750 GeneID:7307 KEGG:hsa:7307 UCSC:uc002zcy.1
GeneCards:GC21M044513 HGNC:HGNC:12453 HPA:HPA044833 MIM:191317
neXtProt:NX_Q01081 PharmGKB:PA37103 PhylomeDB:Q01081 ChiTaRS:U2AF1
EvolutionaryTrace:Q01081 GenomeRNAi:7307 NextBio:28572
ArrayExpress:Q01081 Bgee:Q01081 CleanEx:HS_U2AF1
Genevestigator:Q01081 GermOnline:ENSG00000160201 Uniprot:Q01081
Length = 240
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 51/149 (34%), Positives = 80/149 (53%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H KP+ S+T+ L N + + ++S +
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSA----DGLR 66
Query: 120 LEFDETEMHKYFVEFYDDVLPELRS-LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ EM +++ EF+++V E+ G+V + VC N HL GNVYV + E +A +A
Sbjct: 67 CAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKA 126
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++ G+ I + V + +A C
Sbjct: 127 VIDLNNRWFNGQPIHAELSPVTDFREACC 155
>MGI|MGI:98884 [details] [associations]
symbol:U2af1 "U2 small nuclear ribonucleoprotein auxiliary
factor (U2AF) 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
MGI:MGI:98884 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0016607 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 PANTHER:PTHR12620 CTD:7307
eggNOG:NOG323920 GeneTree:ENSGT00530000063193 HOGENOM:HOG000178619
HOVERGEN:HBG054605 KO:K12836 OrthoDB:EOG4MSD07 ChiTaRS:U2AF1
EMBL:AK008332 EMBL:AK012849 EMBL:AK088979 EMBL:AK150872
EMBL:BC002184 IPI:IPI00318548 RefSeq:NP_001157241.1
RefSeq:NP_077149.2 UniGene:Mm.379289 ProteinModelPortal:Q9D883
SMR:Q9D883 STRING:Q9D883 PaxDb:Q9D883 PRIDE:Q9D883
Ensembl:ENSMUST00000014684 GeneID:108121 KEGG:mmu:108121
InParanoid:Q9D883 NextBio:360106 Bgee:Q9D883 Genevestigator:Q9D883
GermOnline:ENSMUSG00000061613 Uniprot:Q9D883
Length = 239
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 51/149 (34%), Positives = 80/149 (53%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H KP+ S+T+ L N + + ++S +
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSA----DGLR 66
Query: 120 LEFDETEMHKYFVEFYDDVLPELRS-LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ EM +++ EF+++V E+ G+V + VC N HL GNVYV + E +A +A
Sbjct: 67 CAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKA 126
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++ G+ I + V + +A C
Sbjct: 127 VIDLNNRWFNGQPIHAELSPVTDFREACC 155
>ZFIN|ZDB-GENE-020419-1 [details] [associations]
symbol:u2af1 "U2(RNU2) small nuclear RNA auxiliary
factor 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 ZFIN:ZDB-GENE-020419-1
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 PANTHER:PTHR12620 eggNOG:NOG323920
HOGENOM:HOG000178619 HOVERGEN:HBG054605 OrthoDB:EOG4MSD07
EMBL:BC098601 IPI:IPI00501023 UniGene:Dr.18312
ProteinModelPortal:Q4G0A1 SMR:Q4G0A1 STRING:Q4G0A1
InParanoid:Q4G0A1 ArrayExpress:Q4G0A1 Uniprot:Q4G0A1
Length = 250
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 53/149 (35%), Positives = 81/149 (54%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H KP+ S+T+ L N + + + + D +N
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRN---PQNTAQSAD-GLN 66
Query: 120 LEFDETEMHKYFVEFYDDVLPELRS-LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
D EM +++ EF+++V E+ G+V + VC N HL GNVYV + E +A +A
Sbjct: 67 AVSD-VEMREHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKA 125
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++ G+ I + V + +A C
Sbjct: 126 VINLNNRWFNGQPIHAELSPVTDFREACC 154
>UNIPROTKB|Q3T127 [details] [associations]
symbol:U2AF1L4 "Splicing factor U2AF 26 kDa subunit"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 PANTHER:PTHR12620 eggNOG:NOG323920
GeneTree:ENSGT00530000063193 HOGENOM:HOG000178619
HOVERGEN:HBG054605 OrthoDB:EOG4MSD07 EMBL:BC102151 IPI:IPI00689642
RefSeq:NP_001029950.1 UniGene:Bt.13810 ProteinModelPortal:Q3T127
SMR:Q3T127 PRIDE:Q3T127 Ensembl:ENSBTAT00000032279 GeneID:615198
KEGG:bta:615198 CTD:199746 InParanoid:Q3T127 OMA:SERHDRD
NextBio:20899497 Uniprot:Q3T127
Length = 220
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 48/149 (32%), Positives = 81/149 (54%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H KP+ S+T++L N + + + + D +
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRN---PQNTAQTADGS-H 66
Query: 120 LEFDETEMHKYFVEFYDDVLPELRS-LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ E+ +++ F+++V EL+ G++ + VC N HL GNVYV + E +A RA
Sbjct: 67 CHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERA 126
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++ G+ + + V + ++ C
Sbjct: 127 VVELNNRWFNGQAVHAELSPVTDFRESCC 155
>UNIPROTKB|F1PU17 [details] [associations]
symbol:U2AF1L4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 PANTHER:PTHR12620 GeneTree:ENSGT00530000063193
OMA:SERHDRD EMBL:AAEX03001009 ProteinModelPortal:F1PU17
Ensembl:ENSCAFT00000011030 Uniprot:F1PU17
Length = 220
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 48/149 (32%), Positives = 81/149 (54%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H KP+ S+T++L N + + + + D +
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRN---PQNTAQTADGS-H 66
Query: 120 LEFDETEMHKYFVEFYDDVLPELRS-LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ E+ +++ F+++V EL+ G++ + VC N HL GNVYV + E +A RA
Sbjct: 67 CHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERA 126
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++ G+ + + V + ++ C
Sbjct: 127 VAELNNRWFNGQAVHAELSPVTDFRESCC 155
>UNIPROTKB|F1RM65 [details] [associations]
symbol:U2AF1L4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
PANTHER:PTHR12620 GeneTree:ENSGT00530000063193 OMA:GQAVHGE
EMBL:FP243365 Ensembl:ENSSSCT00000003200 ArrayExpress:F1RM65
Uniprot:F1RM65
Length = 232
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 48/149 (32%), Positives = 81/149 (54%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H KP+ S+T++L N + + + + D +
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRN---PQNTAQTADGS-H 66
Query: 120 LEFDETEMHKYFVEFYDDVLPELRS-LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ E+ +++ F+++V EL+ G++ + VC N HL GNVYV + E +A RA
Sbjct: 67 CHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERA 126
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++ G+ + + V + ++ C
Sbjct: 127 VAELNNRWFNGQAVHAELSPVTDFRESCC 155
>UNIPROTKB|G4MRL7 [details] [associations]
symbol:MGG_09948 "Splicing factor U2AF 23 kDa subunit"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CM001231 PANTHER:PTHR12620 KO:K12836 RefSeq:XP_003710052.1
ProteinModelPortal:G4MRL7 EnsemblFungi:MGG_09948T0 GeneID:2680918
KEGG:mgr:MGG_09948 Uniprot:G4MRL7
Length = 209
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 52/148 (35%), Positives = 79/148 (53%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H+KP+ S+T+L+ N + + + D K+ N
Sbjct: 11 TEQDKVNCSFYFKIGACRHGDRCSRKHVKPTYSQTILMPNMYQNPAYDPKN--------N 62
Query: 120 LEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAF 179
+ + + H F FY+D+ EL G++ + VC N + HL GNVY + E A +A
Sbjct: 63 MNASQLQNH--FDAFYEDLWCELCKYGELEELVVCDNNNDHLIGNVYARFKYEDSAQKAC 120
Query: 180 YALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R+Y + I + V + +A C
Sbjct: 121 DELNSRWYAARPIYCELSPVTDFREACC 148
>MGI|MGI:2678374 [details] [associations]
symbol:U2af1l4 "U2 small nuclear RNA auxiliary factor 1-like
4" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 MGI:MGI:2678374 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HSSP:Q01081 PANTHER:PTHR12620 CleanEx:MM_U2AF1L4 eggNOG:NOG323920
GeneTree:ENSGT00530000063193 HOGENOM:HOG000178619
HOVERGEN:HBG054605 KO:K12836 OrthoDB:EOG4MSD07 CTD:199746
OMA:SERHDRD EMBL:AF419339 EMBL:AF419340 EMBL:AK160974 EMBL:BC060972
IPI:IPI00221628 RefSeq:NP_739566.1 UniGene:Mm.34790
ProteinModelPortal:Q8BGJ9 SMR:Q8BGJ9 IntAct:Q8BGJ9 STRING:Q8BGJ9
PhosphoSite:Q8BGJ9 PaxDb:Q8BGJ9 PRIDE:Q8BGJ9
Ensembl:ENSMUST00000043273 Ensembl:ENSMUST00000167042
Ensembl:ENSMUST00000171912 GeneID:233073 KEGG:mmu:233073
UCSC:uc009gfa.1 InParanoid:Q8BGJ9 NextBio:381535 Bgee:Q8BGJ9
Genevestigator:Q8BGJ9 Uniprot:Q8BGJ9
Length = 220
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 48/149 (32%), Positives = 81/149 (54%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H KP+ S+T++L N + + + + D +
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRN---PQNTAQTADGS-H 66
Query: 120 LEFDETEMHKYFVEFYDDVLPELRS-LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ E+ +++ F+++V EL+ G++ + VC N HL GNVYV + E +A RA
Sbjct: 67 CHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERA 126
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++ G+ + + V + ++ C
Sbjct: 127 VAELNNRWFNGQAVHAELSPVTDFRESCC 155
>RGD|1305600 [details] [associations]
symbol:U2af1l4 "U2 small nuclear RNA auxiliary factor 1-like 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
RGD:1305600 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 HSSP:Q01081 PANTHER:PTHR12620 eggNOG:NOG323920
GeneTree:ENSGT00530000063193 HOGENOM:HOG000178619
HOVERGEN:HBG054605 KO:K12836 CTD:199746 OMA:GQAVHGE EMBL:AY325237
EMBL:AY325238 IPI:IPI00365692 IPI:IPI00382197 RefSeq:NP_001008775.1
UniGene:Rn.145185 ProteinModelPortal:Q7TP17 SMR:Q7TP17
STRING:Q7TP17 PhosphoSite:Q7TP17 PRIDE:Q7TP17
Ensembl:ENSRNOT00000038154 Ensembl:ENSRNOT00000046569 GeneID:361542
KEGG:rno:361542 UCSC:RGD:1305600 NextBio:676661
Genevestigator:Q7TP17 Uniprot:Q7TP17
Length = 220
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 48/149 (32%), Positives = 81/149 (54%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR D CSR H KP+ S+T++L N + + + + D +
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRN---PQNTAQTADGS-H 66
Query: 120 LEFDETEMHKYFVEFYDDVLPELRS-LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ E+ +++ F+++V EL+ G++ + VC N HL GNVYV + E +A RA
Sbjct: 67 CHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERA 126
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R++ G+ + + V + ++ C
Sbjct: 127 VAELNNRWFNGQAVHAELSPVTDFRESCC 155
>UNIPROTKB|Q8WU68 [details] [associations]
symbol:U2AF1L4 "Splicing factor U2AF 26 kDa subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR003954 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00361 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HSSP:Q01081 PANTHER:PTHR12620 EMBL:AD000671 CleanEx:HS_U2AF1L4
HOGENOM:HOG000178619 HOVERGEN:HBG054605 CTD:199746 EMBL:AY569437
EMBL:BC021186 IPI:IPI00102851 IPI:IPI00871981 IPI:IPI00872091
RefSeq:NP_001035515.1 RefSeq:NP_659424.2 UniGene:Hs.351558
ProteinModelPortal:Q8WU68 SMR:Q8WU68 IntAct:Q8WU68 STRING:Q8WU68
PhosphoSite:Q8WU68 DMDM:160358766 PaxDb:Q8WU68 PRIDE:Q8WU68
Ensembl:ENST00000292879 Ensembl:ENST00000378975
Ensembl:ENST00000412391 GeneID:199746 KEGG:hsa:199746
UCSC:uc002obe.3 UCSC:uc002obf.3 GeneCards:GC19M036233
HGNC:HGNC:23020 HPA:HPA046378 MIM:601080 neXtProt:NX_Q8WU68
PharmGKB:PA164742763 eggNOG:NOG252826 OMA:GQAVHGE GenomeRNAi:199746
NextBio:89722 ArrayExpress:Q8WU68 Bgee:Q8WU68 Genevestigator:Q8WU68
Uniprot:Q8WU68
Length = 220
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 47/149 (31%), Positives = 81/149 (54%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+G CR D CSR H KP+ S+T++L N + + + + D +
Sbjct: 11 TEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQTIVLLNLYRN---PQNTAQTADGS-H 66
Query: 120 LEFDETEMHKYFVEFYDDVLPELRS-LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ E+ +++ F+++V EL+ G++ + VC N HL GNVYV + E + RA
Sbjct: 67 CHVSDVEVQEHYDSFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERA 126
Query: 179 FYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L+ R++ G+ + G+ V + ++ C
Sbjct: 127 VAELSNRWFNGQAVHGELSPVTDFRESCC 155
>POMBASE|SPAP8A3.06 [details] [associations]
symbol:SPAP8A3.06 "U2AF small subunit, U2AF-23"
species:4896 "Schizosaccharomyces pombe" [GO:0000243 "commitment
complex" evidence=IDA] [GO:0000349 "generation of catalytic
spliceosome for first transesterification step" evidence=IDA]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005686 "U2 snRNP" evidence=TAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR003954 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00361 PomBase:SPAP8A3.06 GO:GO:0005829
EMBL:CU329670 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000243 GO:GO:0000349
GO:GO:0005686 PANTHER:PTHR12620 GO:GO:0045292 eggNOG:NOG323920
HOGENOM:HOG000178619 KO:K12836 EMBL:U48234 PIR:T39243
RefSeq:NP_594945.1 ProteinModelPortal:Q09176 SMR:Q09176
IntAct:Q09176 STRING:Q09176 EnsemblFungi:SPAP8A3.06.1
GeneID:2542482 KEGG:spo:SPAP8A3.06 OMA:HETSECQ OrthoDB:EOG476P88
NextBio:20803537 Uniprot:Q09176
Length = 216
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 51/148 (34%), Positives = 76/148 (51%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDIN 119
T+ DK C FY K+GACR + CSR H+KP+ S+T+L N + + + E +
Sbjct: 11 TEQDKVNCSFYYKIGACRHGERCSRKHVKPNFSQTILCPNMYKN------PIHEPN---G 61
Query: 120 LEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAF 179
+F + E+ + F FY+D+ E G+V Q VC N HL GNVYV + E A A
Sbjct: 62 KKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAI 121
Query: 180 YALTGRFYGGKQIRGQFCNVPLWSKAMC 207
L R+Y + + + V + +A C
Sbjct: 122 DDLNSRWYSQRPVYAELSPVTDFREACC 149
>CGD|CAL0004873 [details] [associations]
symbol:TRY2 species:5476 "Candida albicans" [GO:0044011
"single-species biofilm formation on inanimate substrate"
evidence=IMP] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0010811 "positive
regulation of cell-substrate adhesion" evidence=IMP] [GO:1900189
"positive regulation of cell adhesion involved in single-species
biofilm formation" evidence=IMP] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 CGD:CAL0004873 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0006357 GO:GO:0003723 GO:GO:0010811 GO:GO:1900189
GO:GO:0044011 EMBL:AACQ01000243 EMBL:AACQ01000242 PANTHER:PTHR12620
eggNOG:NOG323920 KO:K12836 RefSeq:XP_710731.1 RefSeq:XP_710740.1
ProteinModelPortal:Q59LX5 GeneID:3647660 GeneID:3647670
KEGG:cal:CaO19.11544 KEGG:cal:CaO19.4062 Uniprot:Q59LX5
Length = 371
Score = 136 (52.9 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 28/103 (27%), Positives = 52/103 (50%)
Query: 105 SMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGN 164
++++ + + + D EF ++ K F +F+ D+ + LGQ+ VC N++ HL GN
Sbjct: 185 NIEDAKLEDTEKDKLPEFTISQSQKDFDQFFQDIFVHISKLGQIRDIAVCENENNHLAGN 244
Query: 165 VYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
VYV + + +A A L ++ GK + V ++ A C
Sbjct: 245 VYVMFESAEDAYNANLQLNQEWFNGKPVYSDLSPVNDFNDACC 287
Score = 121 (47.7 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 66 LCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDN 108
LC FYSK+GACR + CS+ H+KP S+T+LL N + + ++++
Sbjct: 21 LCSFYSKIGACRHGEKCSKKHLKPISSRTILLANLYQNPTLND 63
>UNIPROTKB|Q59LX5 [details] [associations]
symbol:UAF21 "Potential spliceosomal U2AF small subunit"
species:237561 "Candida albicans SC5314" [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0010811 "positive regulation of cell-substrate adhesion"
evidence=IMP] [GO:0044011 "single-species biofilm formation on
inanimate substrate" evidence=IMP] [GO:1900189 "positive regulation
of cell adhesion involved in single-species biofilm formation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642
PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
CGD:CAL0004873 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0003723
GO:GO:0010811 GO:GO:1900189 GO:GO:0044011 EMBL:AACQ01000243
EMBL:AACQ01000242 PANTHER:PTHR12620 eggNOG:NOG323920 KO:K12836
RefSeq:XP_710731.1 RefSeq:XP_710740.1 ProteinModelPortal:Q59LX5
GeneID:3647660 GeneID:3647670 KEGG:cal:CaO19.11544
KEGG:cal:CaO19.4062 Uniprot:Q59LX5
Length = 371
Score = 136 (52.9 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 28/103 (27%), Positives = 52/103 (50%)
Query: 105 SMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGN 164
++++ + + + D EF ++ K F +F+ D+ + LGQ+ VC N++ HL GN
Sbjct: 185 NIEDAKLEDTEKDKLPEFTISQSQKDFDQFFQDIFVHISKLGQIRDIAVCENENNHLAGN 244
Query: 165 VYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSKAMC 207
VYV + + +A A L ++ GK + V ++ A C
Sbjct: 245 VYVMFESAEDAYNANLQLNQEWFNGKPVYSDLSPVNDFNDACC 287
Score = 121 (47.7 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 66 LCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMDN 108
LC FYSK+GACR + CS+ H+KP S+T+LL N + + ++++
Sbjct: 21 LCSFYSKIGACRHGEKCSKKHLKPISSRTILLANLYQNPTLND 63
>CGD|CAL0000603 [details] [associations]
symbol:orf19.53 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IEA] [GO:0000349 "generation of catalytic spliceosome for
first transesterification step" evidence=IEA] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 PRINTS:PR01848
PROSITE:PS50103 SMART:SM00356 CGD:CAL0000603 GO:GO:0005634
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
PANTHER:PTHR12620 EMBL:AACQ01000232 EMBL:AACQ01000231
eggNOG:NOG323920 RefSeq:XP_710852.1 RefSeq:XP_710864.1
ProteinModelPortal:Q59MA7 GeneID:3647530 GeneID:3647542
KEGG:cal:CaO19.53 KEGG:cal:CaO19.7714 Uniprot:Q59MA7
Length = 377
Score = 126 (49.4 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 123 DETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYAL 182
DE ++ K F FY D+ + LGQ+ VC N++ HL G+VY+ +++ +A+ A L
Sbjct: 211 DE-QIQKDFDLFYQDIFVHVAKLGQINDMAVCENEN-HLSGHVYIKFNDYNDAIAANLQL 268
Query: 183 TGRFYGGKQIRGQFCNVPLWSKAMC 207
+Y GK + + V + + A C
Sbjct: 269 NQEWYNGKPVYSELSPVNILADAHC 293
Score = 124 (48.7 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 66 LCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFFTHLSMD 107
LC FY+K+G+CR + CS+ H+KP+++KT+LL N + + D
Sbjct: 15 LCSFYTKIGSCRHGEECSKKHLKPTITKTILLPNLYQNPRFD 56
>TAIR|locus:1006230269 [details] [associations]
symbol:AT3G44785 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 InterPro:IPR009145
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50103 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0008270 GO:GO:0003723
EMBL:AC002534 PANTHER:PTHR12620 eggNOG:NOG323920 KO:K12836
IPI:IPI00522634 RefSeq:NP_974385.1 UniGene:At.65241
ProteinModelPortal:Q3EAP8 SMR:Q3EAP8 STRING:Q3EAP8
EnsemblPlants:AT3G44785.1 GeneID:2745945 KEGG:ath:AT3G44785
TAIR:At3g44785 InParanoid:Q3EAP8 PhylomeDB:Q3EAP8
Genevestigator:Q3EAP8 Uniprot:Q3EAP8
Length = 75
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFF 101
T+ D+ CPFY K+G CR D CSR + KPS+S TLLL+N +
Sbjct: 11 TEKDRVNCPFYFKIGVCRNGDRCSRLYTKPSISPTLLLSNTY 52
>UNIPROTKB|Q29350 [details] [associations]
symbol:U2AF1 "Splicing factor U2AF 35 kDa subunit"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR009145 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 GO:GO:0008380 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
PANTHER:PTHR12620 eggNOG:NOG323920 HOGENOM:HOG000178619
OrthoDB:EOG4MSD07 EMBL:F14757 ProteinModelPortal:Q29350 SMR:Q29350
ArrayExpress:Q29350 Uniprot:Q29350
Length = 82
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLLNNFF-----THLSMDNKSVREY 114
T+ DK C FY K+GACR D CSR H KP+ S+T++L N + T + D
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVS 70
Query: 115 DTDINLEFD 123
D ++ +D
Sbjct: 71 DVEVQEHYD 79
>UNIPROTKB|Q98TR0 [details] [associations]
symbol:U2AF1 "U2snRNP auxiliary factor small subunit
(Truncated)" species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000571 InterPro:IPR009145
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50103 GO:GO:0005634
GO:GO:0008270 GO:GO:0003723 PANTHER:PTHR12620
GeneTree:ENSGT00530000063193 EMBL:AADN02010856 EMBL:AADN02010857
UniGene:Gga.4951 EMBL:AJ291765 IPI:IPI00590217 STRING:Q98TR0
Ensembl:ENSGALT00000026114 HOGENOM:HOG000152077 HOVERGEN:HBG075276
Uniprot:Q98TR0
Length = 49
Score = 105 (42.0 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 60 TKPDKELCPFYSKVGACRFFDHCSRNHIKPSVSKTLLL 97
T+ DK C FY K+GACR D CSR H KP+ S+ +L
Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQEAML 48
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 125 (49.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 83 SRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPEL 142
+RN PS + + NN T+L + N D +I + D +F + +DV E
Sbjct: 750 ARNSFVPSTNN--INNNVTTNLVLSNM-FSSNDENIGSDPD------FFNDILEDVKEEC 800
Query: 143 RSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLW 202
G+V + + ++ G +Y+ YSN E+L++F L GR++GG I F + +W
Sbjct: 801 SKYGKVVNIWL---DTKNIDGKIYIKYSNNDESLKSFQFLNGRYFGGSLINAYFISNDVW 857
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 125 (49.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 83 SRNHIKPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPEL 142
+RN PS + + NN T+L + N D +I + D +F + +DV E
Sbjct: 750 ARNSFVPSTNN--INNNVTTNLVLSNM-FSSNDENIGSDPD------FFNDILEDVKEEC 800
Query: 143 RSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLW 202
G+V + + ++ G +Y+ YSN E+L++F L GR++GG I F + +W
Sbjct: 801 SKYGKVVNIWL---DTKNIDGKIYIKYSNNDESLKSFQFLNGRYFGGSLINAYFISNDVW 857
>WB|WBGene00010233 [details] [associations]
symbol:F58B3.7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01585
PROSITE:PS50102 PROSITE:PS50174 SMART:SM00360 SMART:SM00443
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG317167
KO:K12840 OMA:EEMEKCG InterPro:IPR016967 PIRSF:PIRSF031066
GeneTree:ENSGT00390000008837 EMBL:Z73427 PIR:T22894
RefSeq:NP_502198.1 ProteinModelPortal:Q20966 SMR:Q20966
PaxDb:Q20966 EnsemblMetazoa:F58B3.7.1 EnsemblMetazoa:F58B3.7.2
GeneID:178091 KEGG:cel:CELE_F58B3.7 UCSC:F58B3.7 CTD:178091
WormBase:F58B3.7 HOGENOM:HOG000017949 InParanoid:Q20966
NextBio:899674 Uniprot:Q20966
Length = 371
Score = 111 (44.1 bits), Expect = 0.00030, P = 0.00030
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 133 EFYDDVLPELRSLGQVTQFKVCCNKSPH--LRGNVYVSYSNEREALRAFYALTGRFYGGK 190
EF D++ E+ GQV V ++S + V+V ++N +A++AF + GRF+GG+
Sbjct: 295 EFADEIKEEMEKCGQVVNVIVHVDESQEEDRQVRVFVEFTNNAQAIKAFVMMNGRFFGGR 354
Query: 191 QIRGQFCNV 199
+ F NV
Sbjct: 355 SVSAGFQNV 363
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.139 0.435 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 207 187 0.00085 110 3 11 22 0.41 32
31 0.41 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 48
No. of states in DFA: 606 (64 KB)
Total size of DFA: 188 KB (2107 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.92u 0.10s 19.02t Elapsed: 00:00:05
Total cpu time: 18.93u 0.10s 19.03t Elapsed: 00:00:05
Start: Thu Aug 15 16:18:32 2013 End: Thu Aug 15 16:18:37 2013