RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16559
(207 letters)
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 57.4 bits (138), Expect = 9e-12
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 92 SKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRS-LGQVTQ 150
S+T+ L N + + ++ + + + EM +++ EF+++V E+ G+V +
Sbjct: 1 SQTIALLNIYRN----PQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEE 56
Query: 151 FKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFC 197
VC N HL GNVYV + E +A +A L R++ G+ I +
Sbjct: 57 MNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 50.4 bits (120), Expect = 4e-09
Identities = 18/116 (15%), Positives = 43/116 (37%), Gaps = 22/116 (18%)
Query: 92 SKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQF 151
++ L L N + + + E++E +DV E G V
Sbjct: 4 TEVLCLMNMVLPEELLD----------DEEYEE---------IVEDVRDECSKYGLVKSI 44
Query: 152 KV---CCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCNVPLWSK 204
++ G ++V +++ + +A LTGR + + + ++C+ + +
Sbjct: 45 EIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHR 100
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 44.9 bits (106), Expect = 3e-07
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 21/111 (18%)
Query: 88 KPSVSKTLLLNNFFTHLSMDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQ 147
+ + +++ N F + + + E +D+ E GQ
Sbjct: 4 RMRHERVVIIKNMFHPMDFE------------------DDPLVLNEIREDLRVECSKFGQ 45
Query: 148 VTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198
+ + + H G VS+ + EA L GR++GG+QI Q +
Sbjct: 46 IRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWD 93
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 34.5 bits (79), Expect = 0.001
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 12/81 (14%)
Query: 117 DINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVC-CNKSPHLRGNVYVSYSNEREA 175
D++ + E +++ F G + +VC + G YV++ +A
Sbjct: 7 DLHPDVTEAMLYEKFSPA-----------GPILSIRVCRDMITRRSLGYAYVNFQQPADA 55
Query: 176 LRAFYALTGRFYGGKQIRGQF 196
RA + GK +R +
Sbjct: 56 ERALDTMNFDVIKGKPVRIMW 76
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 33.1 bits (75), Expect = 0.007
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 11/80 (13%)
Query: 119 NLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
NL + T +++ G + Q +P RG YV Y + +A A
Sbjct: 14 NLPYKITA---------EEMYDIFGKYGPIRQI--RVGNTPETRGTAYVVYEDIFDAKNA 62
Query: 179 FYALTGRFYGGKQIRGQFCN 198
L+G + + + N
Sbjct: 63 CDHLSGFNVCNRYLVVLYYN 82
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 33.1 bits (76), Expect = 0.013
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 8 EKEQKRLRDIEEKNRQEKEEREAQEKEFKKSIEDFI-EGVCN---ELPDGFR 55
+KEQK+ +EK +Q + ERE E+++K D E V N E PD FR
Sbjct: 104 QKEQKKQLTSQEK-KQIRLEREKFEEDYKFCELDGRREQVGNFKVEPPDLFR 154
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 31.1 bits (70), Expect = 0.017
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 128 HKYFV-----EFYDDVLPELRS--LGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFY 180
HK F+ DD + EL + V + + +G + Y + +A
Sbjct: 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
Query: 181 ALTGRFYGGKQIR 193
L G G K++
Sbjct: 62 GLNGMQLGDKKLL 74
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 32.8 bits (75), Expect = 0.018
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 8 EKEQKRLRDIEEKNRQEKEEREAQEKEFKKSIEDFI-EGVCN---ELPDGFR 55
+ E ++ EEK + KEE E KE+ I D E + N E P FR
Sbjct: 112 QTEARKQMSKEEK-LKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFR 162
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 30.8 bits (69), Expect = 0.034
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 11/78 (14%)
Query: 119 NLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
NL D D+ G + + +V + + R+A A
Sbjct: 21 NLPPDIRT---------KDIEDVFYKYGAIRD--IDLKNRRGGPPFAFVEFEDPRDAEDA 69
Query: 179 FYALTGRFYGGKQIRGQF 196
Y G Y G ++R +F
Sbjct: 70 VYGRDGYDYDGYRLRVEF 87
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 30.4 bits (68), Expect = 0.045
Identities = 8/58 (13%), Positives = 22/58 (37%)
Query: 141 ELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQFCN 198
EL+ + + ++ +G Y+ + +E +A + G G+ + +
Sbjct: 32 ELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89
>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980
{Cryptosporidium parvum [TaxId: 5807]}
Length = 223
Score = 31.4 bits (71), Expect = 0.059
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 17 IEEKNRQEK---EEREAQEKEFKKSIEDFIEGVCNELPDGFRTNVETKPDKELCPFYSKV 73
EEK R+EK E ++ K+ E+ I ++ N+ ++ F K+
Sbjct: 43 QEEKLRKEKSLNNEFIQVIEDIKRDFEESILLESEDVIRIIDDNLLMYSEEGARAFCIKL 102
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 28.9 bits (64), Expect = 0.11
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 10/76 (13%)
Query: 118 INLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALR 177
++L E ++ + F ++ V +S RG +V + N +A
Sbjct: 17 LSLYTTERDLREVFSKYGP----------IADVSIVYDQQSRRSRGFAFVYFENVDDAKE 66
Query: 178 AFYALTGRFYGGKQIR 193
A G G++IR
Sbjct: 67 AKERANGMELDGRRIR 82
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 28.4 bits (63), Expect = 0.23
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 10/88 (11%)
Query: 106 MDNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNV 165
+ KS Y +++ E ++++ F + D G
Sbjct: 3 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGD----------IKKIIMGLDKMKKTACGFC 52
Query: 166 YVSYSNEREALRAFYALTGRFYGGKQIR 193
+V Y + +A A + G + IR
Sbjct: 53 FVEYYSRADAENAMRYINGTRLDDRIIR 80
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 27.0 bits (59), Expect = 0.40
Identities = 6/40 (15%), Positives = 14/40 (35%)
Query: 154 CCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIR 193
+ +G +V + + A +A AL + +
Sbjct: 32 LDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK 71
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 27.0 bits (59), Expect = 0.79
Identities = 13/56 (23%), Positives = 18/56 (32%)
Query: 141 ELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIRGQF 196
L L V + + N V ++ +A A L G GK IR
Sbjct: 19 SLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 74
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 26.7 bits (58), Expect = 0.87
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 154 CCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIR 193
S + YV+Y +ALRA + G+ ++
Sbjct: 48 SYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK 87
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 26.6 bits (58), Expect = 0.95
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 151 FKVCCNKSPHLRGNVYVSYSNEREALRAFYALTGRFYGGKQIR 193
+ N+ G V++ + EA A L R G ++++
Sbjct: 40 VCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 82
>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4,
KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 433
Score = 27.7 bits (61), Expect = 1.0
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 1 LLIQEEWEKEQKRLRDIEEKNRQEKEEREAQEKEFK 36
+ ++ K ++EE R+ ++E EA+ ++
Sbjct: 322 AIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQ 357
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 25.8 bits (56), Expect = 1.3
Identities = 11/75 (14%), Positives = 19/75 (25%), Gaps = 16/75 (21%)
Query: 119 NLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVYVSYSNEREALRA 178
+ T + F F + R +V+Y A +A
Sbjct: 12 GEDMTPTLLRGAFSPFG----------------NIIDLSMDPPRNCAFVTYEKMESADQA 55
Query: 179 FYALTGRFYGGKQIR 193
L G Q++
Sbjct: 56 VAELNGTQVESVQLK 70
>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase
8, USH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 26.4 bits (58), Expect = 1.6
Identities = 10/32 (31%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 3 IQEEWEKEQKRLRDIEEKNRQEKEEREAQEKE 34
++ +E+ + R + +EEK+RQE+ +R Q+++
Sbjct: 104 LKLRYEEAEVRKK-LEEKDRQEEAQRLQQKRQ 134
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 25.7 bits (56), Expect = 2.0
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 16/87 (18%)
Query: 107 DNKSVREYDTDINLEFDETEMHKYFVEFYDDVLPELRSLGQVTQFKVCCNKSPHLRGNVY 166
K+ Y I + M + F F GQ+ + +V +G +
Sbjct: 15 SPKNCTVYCGGIASGLTDQLMRQTFSPF-----------GQIMEIRV-----FPEKGYSF 58
Query: 167 VSYSNEREALRAFYALTGRFYGGKQIR 193
V +S A A ++ G G ++
Sbjct: 59 VRFSTHESAAHAIVSVNGTTIEGHVVK 85
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component
SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 129
Score = 25.9 bits (57), Expect = 2.4
Identities = 5/28 (17%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 8 EKEQ-KRLRDIEEKNRQEKEEREAQEKE 34
+EQ +++ +++K + ++E+ K+
Sbjct: 86 AEEQLRKIDMLQKKLVEVEDEKIEAIKK 113
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 40
Score = 23.9 bits (52), Expect = 2.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 65 ELCPFYSKVGACRFFDHCSRNH 86
ELC YS+ G CR+ C H
Sbjct: 10 ELCRTYSESGRCRYGAKCQFAH 31
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 23.9 bits (52), Expect = 2.9
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 65 ELCPFYSKVGACRFFDHCSRNH 86
ELC + + G C++ + C H
Sbjct: 7 ELCRPFEESGTCKYGEKCQFAH 28
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 26.5 bits (58), Expect = 2.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 5 EEWEKEQKRLRDIEEKNRQEKEEREAQEKE 34
+ KE ++ R+ EEK R+ K +E EKE
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKE 330
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 25.0 bits (54), Expect = 6.9
Identities = 4/38 (10%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 4 QEEWEKEQKRLRDIEEKNRQEKEEREAQEKEFKKSIED 41
Q ++ I + ++R+A+ + ++
Sbjct: 228 QTRYQAYAAERDRIAAQGLAP-QDRDARIAQLRQQTFT 264
Score = 25.0 bits (54), Expect = 7.5
Identities = 4/33 (12%), Positives = 11/33 (33%)
Query: 2 LIQEEWEKEQKRLRDIEEKNRQEKEEREAQEKE 34
L ++ + +LR E + ++
Sbjct: 246 LAPQDRDARIAQLRQQTFTAPGEAIRAASLDRG 278
>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId:
9606]}
Length = 78
Score = 23.8 bits (51), Expect = 7.8
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 31 QEKEFKKSIEDFIEGVCNELPDGFRTN 57
F +++ + ++ C+ L G
Sbjct: 20 TNSTFVQALVEHVKEECDRLGPGMADI 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.416
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 809,118
Number of extensions: 38135
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 64
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)