BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16562
(445 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 175 bits (443), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 147/290 (50%), Gaps = 27/290 (9%)
Query: 88 KGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMID----REVTLHWHGVYQK 143
V ADG R + +N PGP I KGD ++V N++ + + ++HWHG +QK
Sbjct: 12 NAAVAADGHSRDAVVVNGGTPGPLITGNKGDQFQLNVINNLTNFTMLKSTSVHWHGFFQK 71
Query: 144 VTPWMDGVPMVTQCPIPSSTTFRYKFPA-MPSGTFFYHSHVGLQKMDGLEGSMIIRTPKT 202
T W DG V QCPI + ++F Y F + +GTF+YHSH+ Q DG G ++ P
Sbjct: 72 GTNWADGPAFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLSTQYCDGDRGPFVVYDPN- 130
Query: 203 ADPHAELYDFDLYSHVIIVTDWMHSMTDS--KFPGNTYNDTRIKPDAILINGQNQNPKDN 260
DP A LYD D + VI +TDW H+ + PG DA LINGQ + P
Sbjct: 131 -DPSANLYDVDNLNTVITLTDWYHTAAQNGPAKPGGA--------DATLINGQGRGPS-- 179
Query: 261 SPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTL 320
SP + V KRY R++ SC F+I+ HQ+ +I D V+PLVV + +
Sbjct: 180 SPSADLAVISVTAGKRYRFRLVSNSCDPN-YTFSIDGHQMTIIQVDSINVQPLVVLKIQI 238
Query: 321 FPGDRVDVIIHTNQSNNLYWMQAK------TLCDSITAEAVLQYEGEKLT 364
+ R I++ NQ+ N YW++A + I + A+L+Y G T
Sbjct: 239 YAAQRYSFILNANQAVNNYWIRANPNQGNVGFTNGINS-AILRYSGAAAT 287
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 384 SPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTL 443
SP + V KRY R++ SC F+I+ HQ+ +I D V+PLVV + +
Sbjct: 180 SPSADLAVISVTAGKRYRFRLVSNSCDPN-YTFSIDGHQMTIIQVDSINVQPLVVLKIQI 238
Query: 444 F 444
+
Sbjct: 239 Y 239
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 174 bits (442), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 99/283 (34%), Positives = 147/283 (51%), Gaps = 29/283 (10%)
Query: 91 VTADGFERAILSINRQLPGPSIQVCKGDT----IIVDVKNHMIDREVTLHWHGVYQKVTP 146
+ DGFERA + +N P P I GD ++ + NH + + ++HWHG +QK T
Sbjct: 15 IVPDGFERAAIVVNNVFPAPLITGNMGDNFQLNLVNQMTNHTMLKTTSIHWHGFFQKGTN 74
Query: 147 WMDGVPMVTQCPIPSSTTFRYKF--PAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTAD 204
W DG + QCPI S +F Y F P +GTF+YHSH+ Q DGL G ++ P D
Sbjct: 75 WADGPAFINQCPIASGNSFLYDFQVPGQ-AGTFWYHSHLSTQYCDGLRGPFVVYDPN--D 131
Query: 205 PHAELYDFDLYSHVIIVTDWMH--SMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSP 262
PHA LYD D S VI + DW H + +FP D+ LING + ++P
Sbjct: 132 PHANLYDVDDESTVITLADWYHVAAKLGPRFPKGA--------DSTLINGLGR--STSTP 181
Query: 263 RVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFP 322
+ V + KRY R++ SC F+I+ HQL VI +DG + +P+ VDS+ +F
Sbjct: 182 TADLAVISVTKGKRYRFRLVSLSCDPN-YTFSIDSHQLTVIEADGVSTQPVTVDSIQIFA 240
Query: 323 GDRVDVIIHTNQSNNLYWMQAK------TLCDSITAEAVLQYE 359
R +++ NQ + YW++A D + + A+L+Y+
Sbjct: 241 AQRYSFVLNANQDVDNYWIRANPNFGTTGFADGVNS-AILRYD 282
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 383 NSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVT 442
++P + V + KRY R++ SC F+I+ HQL VI +DG + +P+ VDS+
Sbjct: 179 STPTADLAVISVTKGKRYRFRLVSLSCDPN-YTFSIDSHQLTVIEADGVSTQPVTVDSIQ 237
Query: 443 LF 444
+F
Sbjct: 238 IF 239
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 148/286 (51%), Gaps = 27/286 (9%)
Query: 91 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDV----KNHMIDREVTLHWHGVYQKVTP 146
V+ DGF R + +N P P I KGD ++V NH + + ++HWHG +Q T
Sbjct: 15 VSPDGFLRDAIVVNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTN 74
Query: 147 WMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVGLQKMDGLEGSMIIRTPKTAD 204
W DG V QCPI S +F Y F +P +GTF+YHSH+ Q DGL G ++ PK D
Sbjct: 75 WADGPAFVNQCPIASGHSFLYDF-HVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPK--D 131
Query: 205 PHAELYDFDLYSHVIIVTDWMHSMT--DSKFPGNTYNDTRIKPDAILINGQNQNPKDNSP 262
PHA YD D S VI +TDW H+ +FP + DA LING + ++P
Sbjct: 132 PHASRYDVDNESTVITLTDWYHTAARLGPRFP--------LGADATLINGLGR--SASTP 181
Query: 263 RVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFP 322
+ VQ KRY R++ SC F+I+ H L VI DG +PL+VDS+ +F
Sbjct: 182 TAALAVINVQHGKRYRFRLVSISCDPN-YTFSIDGHNLTVIEVDGINSQPLLVDSIQIFA 240
Query: 323 GDRVDVIIHTNQSNNLYWMQAKTLCDSI-----TAEAVLQYEGEKL 363
R +++ NQ+ YW++A ++ A+L+Y+G +
Sbjct: 241 AQRYSFVLNANQTVGNYWIRANPNFGTVGFAGGINSAILRYQGAPV 286
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 383 NSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVT 442
++P + VQ KRY R++ SC F+I+ H L VI DG +PL+VDS+
Sbjct: 179 STPTAALAVINVQHGKRYRFRLVSISCDPN-YTFSIDGHNLTVIEVDGINSQPLLVDSIQ 237
Query: 443 LF 444
+F
Sbjct: 238 IF 239
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 171 bits (432), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 111/342 (32%), Positives = 172/342 (50%), Gaps = 36/342 (10%)
Query: 91 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMID----REVTLHWHGVYQKVTP 146
VT DGF RA + N PGP I KGD ++V +++ + + T+HWHG++Q T
Sbjct: 15 VTPDGFTRAAVVANGVFPGPLITGNKGDNFQINVIDNLTNATMLKTTTIHWHGLFQHGTN 74
Query: 147 WMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVGLQKMDGLEGSMIIRTPKTAD 204
W DG V QCPI S +F Y F +P +GTF+YHSH+ Q DGL G +++ P +D
Sbjct: 75 WADGPAFVNQCPIASGNSFLYDF-TVPDQAGTFWYHSHLSTQYCDGLRGPLVVYDP--SD 131
Query: 205 PHAELYDFDLYSHVIIVTDWMHSMT--DSKFPGNTYNDTRIKPDAILINGQNQNPKDNSP 262
P+A +YD D + VI ++DW H+ FP N D++LING + N+
Sbjct: 132 PYASMYDVDDDTTVITLSDWYHTAAKLGPAFPPNA--------DSVLINGLGRFAGGNAS 183
Query: 263 RVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFP 322
+ + V+++KRY R++ SC F+I+ H + +I DG EPL VDS+ +F
Sbjct: 184 DLAV--ITVEQNKRYRFRLVSLSCDPN-FTFSIDGHNMTIIEVDGVNHEPLEVDSIQIFA 240
Query: 323 GDRVDVIIHTNQSNNLYWMQAKTLCDSITA-----EAVLQYEGEKLTYVSKRPKSDSFPR 377
R +++ QS + YW++A +I A+L+Y G + P +++
Sbjct: 241 SQRYSFVLNATQSVDNYWIRAIPNTGTIDTTGGLNSAILRYSGADIV----DPTANATTS 296
Query: 378 GKPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIE 419
P + VP+ D ++GG LA L F+
Sbjct: 297 VIPLVETDLVPLDSPAAPGDP-----VVGGVDLAMNLDFSFN 333
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 393 KVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLF 444
V+++KRY R++ SC F+I+ H + +I DG EPL VDS+ +F
Sbjct: 189 TVEQNKRYRFRLVSLSCDPN-FTFSIDGHNMTIIEVDGVNHEPLEVDSIQIF 239
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 144/284 (50%), Gaps = 27/284 (9%)
Query: 90 CVTADGFERAILSINRQLPGPSIQVCKGD----TIIVDVKNHMIDREVTLHWHGVYQKVT 145
V+ DGF R + +N PGP + GD +I ++ NH + + ++HWHG +Q T
Sbjct: 14 AVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGT 73
Query: 146 PWMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVGLQKMDGLEGSMIIRTPKTA 203
W DG + QCPI +F Y F +P +GTF+YHSH+ Q DGL G ++ P
Sbjct: 74 NWADGPAFINQCPISPGHSFLYDF-QVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPN-- 130
Query: 204 DPHAELYDFDLYSHVIIVTDWMHSMT--DSKFPGNTYNDTRIKPDAILINGQNQNPKDNS 261
DPHA YD D VI + DW H+ +FPG DA LING+ + P D+
Sbjct: 131 DPHASRYDVDNDDTVITLADWYHTAAKLGPRFPGGA--------DATLINGKGRAPSDSV 182
Query: 262 PRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLF 321
+ + KV + KRY R++ SC F+I+ H L +I D +PL VDS+ +F
Sbjct: 183 AELSV--IKVTKGKRYRFRLVSLSCNPN-HTFSIDGHNLTIIEVDSVNSQPLEVDSIQIF 239
Query: 322 PGDRVDVIIHTNQSNNLYWMQA-----KTLCDSITAEAVLQYEG 360
R ++ NQ+ + YW++A D A+L+Y+G
Sbjct: 240 AAQRYSFVLDANQAVDNYWIRANPNFGNVGFDGGINSAILRYDG 283
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 393 KVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLF 444
KV + KRY R++ SC F+I+ H L +I D +PL VDS+ +F
Sbjct: 189 KVTKGKRYRFRLVSLSCNPN-HTFSIDGHNLTIIEVDSVNSQPLEVDSIQIF 239
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 144/284 (50%), Gaps = 27/284 (9%)
Query: 90 CVTADGFERAILSINRQLPGPSIQVCKGD----TIIVDVKNHMIDREVTLHWHGVYQKVT 145
V+ DGF R + +N PGP + GD +I ++ NH + + ++HWHG +Q T
Sbjct: 14 AVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGT 73
Query: 146 PWMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVGLQKMDGLEGSMIIRTPKTA 203
W DG + QCPI +F Y F +P +GTF+YHSH+ Q DGL G ++ P
Sbjct: 74 NWADGPAFINQCPISPGHSFLYDF-QVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPN-- 130
Query: 204 DPHAELYDFDLYSHVIIVTDWMHSMT--DSKFPGNTYNDTRIKPDAILINGQNQNPKDNS 261
DPHA YD D VI + DW H+ +FPG DA LING+ + P D+
Sbjct: 131 DPHASRYDVDNDDTVITLADWYHTAAKLGPRFPGGA--------DATLINGKGRAPSDSV 182
Query: 262 PRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLF 321
+ + KV + KRY R++ SC F+I+ H L +I D +PL VDS+ +F
Sbjct: 183 AELSV--IKVTKGKRYRFRLVSLSCNPN-HTFSIDGHNLTIIEVDSVNSQPLEVDSIQIF 239
Query: 322 PGDRVDVIIHTNQSNNLYWMQA-----KTLCDSITAEAVLQYEG 360
R ++ NQ+ + YW++A D A+L+Y+G
Sbjct: 240 AAQRYSFVLDANQAVDNYWIRANPNFGNVGFDGGINSAILRYDG 283
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 393 KVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLF 444
KV + KRY R++ SC F+I+ H L +I D +PL VDS+ +F
Sbjct: 189 KVTKGKRYRFRLVSLSCNPN-HTFSIDGHNLTIIEVDSVNSQPLEVDSIQIF 239
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 148/285 (51%), Gaps = 29/285 (10%)
Query: 91 VTADGFERAILSINRQLPGPSIQVCKGDT----IIVDVKNHMIDREVTLHWHGVYQKVTP 146
V+ DGF RA + +N + GP I+ K D ++ D+ N + R ++HWHG++Q+ T
Sbjct: 16 VSPDGFTRAGILVN-GVHGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTN 74
Query: 147 WMDGVPMVTQCPIPSSTTFRYKF-PAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADP 205
W DG V QCPI F YKF PA +GTF+YHSH G Q DGL G M+I DP
Sbjct: 75 WADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDN--DP 132
Query: 206 HAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRVP 265
HA LYD D + +I + DW H S +PDA LING+ + P
Sbjct: 133 HAALYDEDDENTIITLADWYHIPAPSI-------QGAAQPDATLINGKGR--YVGGPAAE 183
Query: 266 MHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDR 325
+ V++ K+Y MR+I SC F+I+ H+L +I DG EP VD + +F G R
Sbjct: 184 LSIVNVEQGKKYRMRLISLSCDPN-WQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQR 242
Query: 326 VDVIIHTNQSNNLYWMQAK----------TLCDSITAEAVLQYEG 360
++ NQ + YW++A+ T + + + A+L+Y G
Sbjct: 243 YSFVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNS-AILRYAG 286
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 384 SPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTL 443
P + V++ K+Y MR+I SC F+I+ H+L +I DG EP VD + +
Sbjct: 179 GPAAELSIVNVEQGKKYRMRLISLSCDPN-WQFSIDGHELTIIEVDGELTEPHTVDRLQI 237
Query: 444 F 444
F
Sbjct: 238 F 238
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 148/285 (51%), Gaps = 29/285 (10%)
Query: 91 VTADGFERAILSINRQLPGPSIQVCKGDT----IIVDVKNHMIDREVTLHWHGVYQKVTP 146
V+ DGF RA + +N + GP I+ K D ++ D+ N + R ++HWHG++Q+ T
Sbjct: 16 VSPDGFTRAGILVN-GVHGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTN 74
Query: 147 WMDGVPMVTQCPIPSSTTFRYKF-PAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADP 205
W DG V QCPI F YKF PA +GTF+YHSH G Q DGL G M+I DP
Sbjct: 75 WADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDN--DP 132
Query: 206 HAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRVP 265
HA LYD D + +I + DW H S +PDA LING+ + P
Sbjct: 133 HAALYDEDDENTIITLADWYHIPAPSI-------QGAAQPDATLINGKGR--YVGGPAAE 183
Query: 266 MHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDR 325
+ V++ K+Y MR+I SC F+I+ H+L +I DG EP VD + +F G R
Sbjct: 184 LSIVNVEQGKKYRMRLISLSCDPN-WQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQR 242
Query: 326 VDVIIHTNQSNNLYWMQAK----------TLCDSITAEAVLQYEG 360
++ NQ + YW++A+ T + + + A+L+Y G
Sbjct: 243 YSFVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNS-AILRYAG 286
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 384 SPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTL 443
P + V++ K+Y MR+I SC F+I+ H+L +I DG EP VD + +
Sbjct: 179 GPAAELSIVNVEQGKKYRMRLISLSCDPN-WQFSIDGHELTIIEVDGELTEPHTVDRLQI 237
Query: 444 F 444
F
Sbjct: 238 F 238
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 146/288 (50%), Gaps = 27/288 (9%)
Query: 88 KGCVTADGFERAILSINRQLPGPSIQVCKGD----TIIVDVKNHMIDREVTLHWHGVYQK 143
V+ DGF R + +N PGP I GD +I ++ NH + + ++HWHG +QK
Sbjct: 12 NAAVSPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQK 71
Query: 144 VTPWMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVGLQKMDGLEGSMIIRTPK 201
T W DG + QCPI S +F Y F +P +GTF+YHSH+ Q DGL G ++ P
Sbjct: 72 GTNWADGPAFINQCPISSGHSFLYDF-QVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPN 130
Query: 202 TADPHAELYDFDLYSHVIIVTDWMH--SMTDSKFPGNTYNDTRIKPDAILINGQNQNPKD 259
DP A+LYD D VI + DW H + FP + DA LING+ ++P
Sbjct: 131 --DPAADLYDVDNDDTVITLVDWYHVAAKLGPAFP--------LGADATLINGKGRSPST 180
Query: 260 NSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVT 319
+ + + V KRY R++ SC F+I+ H + +I +D PLVVDS+
Sbjct: 181 TTADLSV--ISVTPGKRYRFRLVSLSCDPN-YTFSIDGHNMTIIETDSINTAPLVVDSIQ 237
Query: 320 LFPGDRVDVIIHTNQSNNLYWMQAKTLCDSI-----TAEAVLQYEGEK 362
+F R ++ NQ+ + YW++A ++ A+L+Y+G
Sbjct: 238 IFAAQRYSFVLEANQAVDNYWIRANPNFGNVGFTGGINSAILRYDGAA 285
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 393 KVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLF 444
V KRY R++ SC F+I+ H + +I +D PLVVDS+ +F
Sbjct: 189 SVTPGKRYRFRLVSLSCDPN-YTFSIDGHNMTIIETDSINTAPLVVDSIQIF 239
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 145/284 (51%), Gaps = 27/284 (9%)
Query: 90 CVTADGFERAILSINRQLPGPSIQVCKGD----TIIVDVKNHMIDREVTLHWHGVYQKVT 145
+ DGF R + +N PGP + GD +I ++ NH + + ++HWHG +Q+ T
Sbjct: 14 ATSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGT 73
Query: 146 PWMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVGLQKMDGLEGSMIIRTPKTA 203
W DG + QCPI +F Y F +P +GTF+YHSH+ Q DGL G ++ P
Sbjct: 74 NWADGPAFINQCPISPGHSFLYDF-QVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPN-- 130
Query: 204 DPHAELYDFDLYSHVIIVTDWMHSMT--DSKFPGNTYNDTRIKPDAILINGQNQNPKDNS 261
DPHA YD D VI + DW H+ +FP DA LING+ + P D S
Sbjct: 131 DPHASRYDVDNDDTVITLADWYHTAAKLGPRFPAGA--------DATLINGKGRAPSDTS 182
Query: 262 PRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLF 321
+ + KV + KR R++ SC F+I+ H L +I D + +PL VDS+ +F
Sbjct: 183 AELSV--IKVTKGKRXRFRLVSLSCDPN-FTFSIDGHNLTIIEVDSSNSQPLSVDSIQIF 239
Query: 322 PGDRVDVIIHTNQSNNLYWMQAKTLCDSI-----TAEAVLQYEG 360
R +++ NQ+ + YW++A ++ A+L+Y+G
Sbjct: 240 AAQRYSFVLNANQAVDNYWIRANPNFGNVGFNGGINSAILRYDG 283
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 380 PKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVD 439
P D S + + KV + KR R++ SC F+I+ H L +I D + +PL VD
Sbjct: 178 PSDTSAELSV--IKVTKGKRXRFRLVSLSCDPN-FTFSIDGHNLTIIEVDSSNSQPLSVD 234
Query: 440 SVTLF 444
S+ +F
Sbjct: 235 SIQIF 239
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 161 bits (407), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 143/286 (50%), Gaps = 24/286 (8%)
Query: 88 KGCVTADGFERAILSINRQLPGPSIQVCKGD----TIIVDVKNHMIDREVTLHWHGVYQK 143
G V+ DGF R + +N P P I KGD +I ++ NH + + ++HWHG +Q
Sbjct: 12 NGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQH 71
Query: 144 VTPWMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVGLQKMDGLEGSMIIRTPK 201
T W DG V QCPI + F Y F +P +GTF+YHSH+ Q DGL G +++ P
Sbjct: 72 GTNWADGPAFVNQCPISTGHAFLYDF-QVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPN 130
Query: 202 TADPHAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNS 261
DPHA LYD D S VI + DW H P T DA LING ++ +
Sbjct: 131 --DPHASLYDVDDDSTVITLADWYHLAAKVGAPVPT-------ADATLINGLGRSAA--T 179
Query: 262 PRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLF 321
+ V + KRY R++ SC F+I+ H L VI +D ++P VDS+ +F
Sbjct: 180 LAADLAVITVTKGKRYRFRLVSLSCDPN-YTFSIDGHSLTVIEADSVNLKPHTVDSLQIF 238
Query: 322 PGDRVDVIIHTNQSNNLYWMQAKTLCDSI-----TAEAVLQYEGEK 362
R +++ +Q + YW++A + T A+L+Y+G
Sbjct: 239 AAQRYSFVLNADQDVDNYWIRALPNSGTQNFAGGTNSAILRYDGAA 284
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 394 VQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLF 444
V + KRY R++ SC F+I+ H L VI +D ++P VDS+ +F
Sbjct: 189 VTKGKRYRFRLVSLSCDPN-YTFSIDGHSLTVIEADSVNLKPHTVDSLQIF 238
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 161 bits (407), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 143/286 (50%), Gaps = 24/286 (8%)
Query: 88 KGCVTADGFERAILSINRQLPGPSIQVCKGD----TIIVDVKNHMIDREVTLHWHGVYQK 143
G V+ DGF R + +N P P I KGD +I ++ NH + + ++HWHG +Q
Sbjct: 12 NGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQH 71
Query: 144 VTPWMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVGLQKMDGLEGSMIIRTPK 201
T W DG V QCPI + F Y F +P +GTF+YHSH+ Q DGL G +++ P
Sbjct: 72 GTNWADGPAFVNQCPISTGHAFLYDF-QVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPN 130
Query: 202 TADPHAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNS 261
DPHA LYD D S VI + DW H P T DA LING ++ +
Sbjct: 131 --DPHASLYDVDDDSTVITLADWYHLAAKVGAPVPT-------ADATLINGLGRSAA--T 179
Query: 262 PRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLF 321
+ V + KRY R++ SC F+I+ H L VI +D ++P VDS+ +F
Sbjct: 180 LAADLAVITVTKGKRYRFRLVSLSCDPN-YTFSIDGHSLTVIEADSVNLKPHTVDSLQIF 238
Query: 322 PGDRVDVIIHTNQSNNLYWMQAKTLCDSI-----TAEAVLQYEGEK 362
R +++ +Q + YW++A + T A+L+Y+G
Sbjct: 239 AAQRYSFVLNADQDVDNYWIRALPNSGTQNFAGGTNSAILRYDGAA 284
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 394 VQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLF 444
V + KRY R++ SC F+I+ H L VI +D ++P VDS+ +F
Sbjct: 189 VTKGKRYRFRLVSLSCDPN-YTFSIDGHSLTVIEADSVNLKPHTVDSLQIF 238
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 142/284 (50%), Gaps = 24/284 (8%)
Query: 88 KGCVTADGFERAILSINRQLPGPSIQVCKGD----TIIVDVKNHMIDREVTLHWHGVYQK 143
G V+ DGF R + +N P P I KGD +I ++ NH + + ++HWHG +Q
Sbjct: 12 NGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQH 71
Query: 144 VTPWMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVGLQKMDGLEGSMIIRTPK 201
T W DG V QCPI + F Y F +P +GTF+YHSH+ Q DGL G +++ P+
Sbjct: 72 GTNWADGPAFVNQCPISTGHAFLYDF-QVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPQ 130
Query: 202 TADPHAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNS 261
DPH LYD D S VI + DW H P T DA LING + ++
Sbjct: 131 --DPHKSLYDVDDDSTVITLADWYHLAAKVGSPVPT-------ADATLINGLGR--SIDT 179
Query: 262 PRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLF 321
+ V + KRY R++ SC +F+I+ H L VI +D ++P VDS+ +F
Sbjct: 180 LNADLAVITVTKGKRYRFRLVSLSCDPN-HVFSIDGHSLTVIEADSVNLKPQTVDSIQIF 238
Query: 322 PGDRVDVIIHTNQSNNLYWMQA-----KTLCDSITAEAVLQYEG 360
R +++ +Q YW++A D A+L+Y+G
Sbjct: 239 AAQRYSFVLNADQDVGNYWIRALPNSGTRNFDGGVNSAILRYDG 282
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 394 VQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLF 444
V + KRY R++ SC +F+I+ H L VI +D ++P VDS+ +F
Sbjct: 189 VTKGKRYRFRLVSLSCDPN-HVFSIDGHSLTVIEADSVNLKPQTVDSIQIF 238
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 155 bits (391), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 98/287 (34%), Positives = 142/287 (49%), Gaps = 35/287 (12%)
Query: 91 VTADGFERAILSINRQLPGPSIQVCKGD----TIIVDVKNHMIDREVTLHWHGVYQKVTP 146
V+ DGF R + +N P P I KGD +I + NH + + ++HWHG +Q+ T
Sbjct: 15 VSPDGFAREAVVVNGITPAPLITGNKGDRFQLNVIDQLTNHTMLKTSSIHWHGFFQQGTN 74
Query: 147 WMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVGLQKMDGLEGSMIIRTPKTAD 204
W DG V QCPI S +F Y F +P +GTF+YHSH+ Q DGL G ++ P D
Sbjct: 75 WADGPAFVNQCPIASGHSFLYDF-QVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPN--D 131
Query: 205 PHAELYDFDLYSHVIIVTDWMH--SMTDSKFPGNTYNDTRIKPDAILINGQNQN----PK 258
PHA LYD D VI + DW H + +FP D+ LING + P
Sbjct: 132 PHASLYDIDNDDTVITLADWYHVAAKLGPRFP--------FGSDSTLINGLGRTTGIAPS 183
Query: 259 DNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSV 318
D + KV + KRY R++ SC F+I+ H + +I +D +PL VDS+
Sbjct: 184 D------LAVIKVTQGKRYRFRLVSLSCDPN-HTFSIDNHTMTIIEADSINTQPLEVDSI 236
Query: 319 TLFPGDRVDVIIHTNQSNNLYWMQA-----KTLCDSITAEAVLQYEG 360
+F R ++ +Q + YW++A T A+L+Y+G
Sbjct: 237 QIFAAQRYSFVLDASQPVDNYWIRANPAFGNTGFAGGINSAILRYDG 283
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 393 KVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLF 444
KV + KRY R++ SC F+I+ H + +I +D +PL VDS+ +F
Sbjct: 189 KVTQGKRYRFRLVSLSCDPN-HTFSIDNHTMTIIEADSINTQPLEVDSIQIF 239
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 154 bits (390), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 141/286 (49%), Gaps = 27/286 (9%)
Query: 88 KGCVTADGFERAILSINRQLPGPSIQVCKGD----TIIVDVKNHMIDREVTLHWHGVYQK 143
+ DGF R + +N PGP + GD +I ++ NH + + ++HWHG +Q+
Sbjct: 12 NAATSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQ 71
Query: 144 VTPWMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVGLQKMDGLEGSMIIRTPK 201
T W DG + QCPI +F Y F +P +GTF+YHSH+ Q DGL G ++ P
Sbjct: 72 GTNWADGPAFINQCPISPGHSFLYDF-QVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPN 130
Query: 202 TADPHAELYDFDLYSHVIIVTDWMHSMT--DSKFPGNTYNDTRIKPDAILINGQNQNPKD 259
DPHA YD D I + DW H+ FP D+ LING+ + P D
Sbjct: 131 --DPHASRYDVDNDDTTITLADWYHTAAKLGPAFPNGA--------DSTLINGKGRAPSD 180
Query: 260 NSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVT 319
+S ++ + V + KR R++ SC F+I+ H +I +D +PL DS+
Sbjct: 181 SSAQLSV--VSVTKGKRXRFRLVSLSCDPN-FTFSIDGHNNTIIETDSVNSQPLNTDSIQ 237
Query: 320 LFPGDRVDVIIHTNQSNNLYWMQAKTLCDSI-----TAEAVLQYEG 360
+F R ++ NQ+ + YW++A ++ A+L+Y+G
Sbjct: 238 IFAAQRYSFTLNANQAVDNYWIRANPNFGNVGFNGGINSAILRYDG 283
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 379 KPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVV 438
P D+S ++ + V + KR R++ SC F+I+ H +I +D +PL
Sbjct: 177 APSDSSAQLSV--VSVTKGKRXRFRLVSLSCDPN-FTFSIDGHNNTIIETDSVNSQPLNT 233
Query: 439 DSVTLF 444
DS+ +F
Sbjct: 234 DSIQIF 239
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 154 bits (390), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 138/281 (49%), Gaps = 21/281 (7%)
Query: 91 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMID----REVTLHWHGVYQKVTP 146
+ DGF R ++ PGP I GD + N +I+ + ++HWHG +QK T
Sbjct: 16 IVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTN 75
Query: 147 WMDGVPMVTQCPIPSSTTFRYKF--PAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTAD 204
W DG +TQCPI +F Y F P M +GT++YHSH+ Q DGL G ++ P D
Sbjct: 76 WADGPAFITQCPIIVGNSFSYNFNVPGM-AGTYWYHSHLTTQYCDGLRGPFVVYDPN--D 132
Query: 205 PHAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRV 264
P A LYD D + +I + DW H + G I D+ LI+G + N V
Sbjct: 133 PDANLYDVDDDTTIITLADWYHVLAKEMGAGGA-----ITADSTLIDGLGRT-HVNVAAV 186
Query: 265 PMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGD 324
P+ V+ KRY MR++ SC F+I+ H + +I +DG + L VD + +F
Sbjct: 187 PLSVITVEVGKRYRMRLVSISCDPN-YDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQ 245
Query: 325 RVDVIIHTNQSNNLYWMQAKTLC-----DSITAEAVLQYEG 360
R +++ NQ YW++A D A+L+Y+G
Sbjct: 246 RYSFVLNANQPVGNYWIRANPNSGGEGFDGGINSAILRYDG 286
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 378 GKPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLV 437
G+ N VP+ V+ KRY MR++ SC F+I+ H + +I +DG + L
Sbjct: 177 GRTHVNVAAVPLSVITVEVGKRYRMRLVSISCDPN-YDFSIDGHDMTIIETDGVDSQELT 235
Query: 438 VDSVTLF 444
VD + +F
Sbjct: 236 VDEIQIF 242
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 134/257 (52%), Gaps = 18/257 (7%)
Query: 118 DTIIVDVKNHMID----REVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMP 173
D ++V + + D R ++HWHG +Q T MDG V QCPI + +F Y F +P
Sbjct: 63 DRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDF-VVP 121
Query: 174 --SGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDS 231
+GT++YHSH+ Q DGL G+ ++ P DPH LYD D S VI + DW HS++
Sbjct: 122 GQAGTYWYHSHLSTQYCDGLRGAFVVYDPN--DPHLSLYDVDDASTVITIADWYHSLSTV 179
Query: 232 KFPGNTYNDTRIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPL 291
F N PD LING +N + S + VQ KRY RI+ SC
Sbjct: 180 LF--PNPNKAPPAPDTTLINGLGRNSANPSAG-QLAVVSVQSGKRYRFRIVSTSCFPN-Y 235
Query: 292 IFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQA-----KTL 346
F+I+ H++ VI DG + +PL VDS+T+F G R V++ NQ+ YW++A +
Sbjct: 236 AFSIDGHRMTVIEVDGVSHQPLTVDSLTIFAGQRYSVVVEANQAVGNYWIRANPSNGRNG 295
Query: 347 CDSITAEAVLQYEGEKL 363
A+ +Y+G +
Sbjct: 296 FTGGINSAIFRYQGAAV 312
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 378 GKPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLV 437
G+ N + VQ KRY RI+ SC F+I+ H++ VI DG + +PL
Sbjct: 200 GRNSANPSAGQLAVVSVQSGKRYRFRIVSTSCFPN-YAFSIDGHRMTVIEVDGVSHQPLT 258
Query: 438 VDSVTLF 444
VDS+T+F
Sbjct: 259 VDSLTIF 265
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 137/267 (51%), Gaps = 23/267 (8%)
Query: 97 ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQ 156
E ++ IN Q PGP+I+ GD+++V++ N + V +HWHG+ Q+ TPW DG ++Q
Sbjct: 21 ENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQ 80
Query: 157 CPIPSSTTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDLYS 216
C I TF Y F GTFFYH H+G+Q+ GL GS+I+ P+ E + +D
Sbjct: 81 CAINPGETFFYNFTVDNPGTFFYHGHLGMQRSAGLYGSLIVDPPQGKK---EPFHYDGEI 137
Query: 217 HVIIVTDWMHSMTDSKFPGNTYNDTRI--KPDAILINGQNQ-----NPKDNSPRVPM--- 266
+ ++++DW H + G + R +P IL+NG+ Q K +S P
Sbjct: 138 N-LLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQFDCSIAAKYDSNLEPCKLK 196
Query: 267 -------HFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVT 319
+ F V K Y +RI + LA L F I HQL V+ +DG V+P +
Sbjct: 197 GSESCAPYIFHVSPKKTYRIRIASTTALAA-LNFAIGNHQLLVVEADGNYVQPFYTSDID 255
Query: 320 LFPGDRVDVIIHTNQS-NNLYWMQAKT 345
++ G+ V+I T+Q+ + YW+ T
Sbjct: 256 IYSGESYSVLITTDQNPSENYWVSVGT 282
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 390 HFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLF 444
+ F V K Y +RI + LA L F I HQL V+ +DG V+P + ++
Sbjct: 204 YIFHVSPKKTYRIRIASTTALAA-LNFAIGNHQLLVVEADGNYVQPFYTSDIDIY 257
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 170/362 (46%), Gaps = 44/362 (12%)
Query: 42 KNNLCARPCDNAKPLVCYYSFTLE-NYATVGPACADCLKGNQKACRRKGCVTADGFERAI 100
+ N A ++A C+ ++++ N+ V P + +T DG+ R+
Sbjct: 32 RQNTTASCANSATSRSCWGEYSIDTNWYDVTPTG---VTREYWLSVENSTITPDGYTRSA 88
Query: 101 LSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIP 160
++ N +PGP+I GD +I+ V N++ ++HWHG+ Q + DGVP VTQCPI
Sbjct: 89 MTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQCPIA 148
Query: 161 SSTTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDLYSHVII 220
T YKF GT +YHSH LQ DGL G +II P TAD YD D+ VI
Sbjct: 149 PGDTLTYKFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGPATAD-----YDEDV--GVIF 201
Query: 221 VTDWMHSMTDSKFPGNTYNDTRI-KPDAI---LINGQNQ---------NPKDNSPRVPMH 267
+ DW H +S F ++ R+ P A+ L+NG N N + +
Sbjct: 202 LQDWAH---ESVF--EIWDTARLGAPPALENTLMNGTNTFDCSASTDPNCVGGGKKFELT 256
Query: 268 FFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVD 327
F + +Y +R+I + F I+ H L VIA+D + P D++ + G R D
Sbjct: 257 FVE---GTKYRLRLI-NVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTDTLLIGIGQRYD 312
Query: 328 VIIHTNQSNNLYWMQAK--TLC----DSITAEAVLQYEGEKLTYVSKRPKS-DSFPRGKP 380
VI+ N + + YW++ T C ++ A +L+Y+ + P S + PRG
Sbjct: 313 VIVEANAAADNYWIRGNWGTTCSTNNEAANATGILRYDSSSI----ANPTSVGTTPRGTC 368
Query: 381 KD 382
+D
Sbjct: 369 ED 370
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 170/362 (46%), Gaps = 44/362 (12%)
Query: 42 KNNLCARPCDNAKPLVCYYSFTLE-NYATVGPACADCLKGNQKACRRKGCVTADGFERAI 100
+ N A ++A C+ ++++ N+ V P + +T DG+ R+
Sbjct: 32 RQNTTASCANSATSRSCWGEYSIDTNWYDVTPTG---VTREYWLSVENSTITPDGYTRSA 88
Query: 101 LSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIP 160
++ N +PGP+I GD +I+ V N++ ++HWHG+ Q + DGVP VTQCPI
Sbjct: 89 MTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQCPIA 148
Query: 161 SSTTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDLYSHVII 220
T YKF GT +YHSH LQ DGL G +II P TAD YD D+ VI
Sbjct: 149 PGDTLTYKFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGPATAD-----YDEDV--GVIF 201
Query: 221 VTDWMHSMTDSKFPGNTYNDTRI-KPDAI---LINGQNQ---------NPKDNSPRVPMH 267
+ DW H +S F ++ R+ P A+ L+NG N N + +
Sbjct: 202 LQDWAH---ESVF--EIWDTARLGAPPALENTLMNGTNTFDCSASTDPNCVGGGKKFELT 256
Query: 268 FFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVD 327
F + +Y +R+I + F I+ H L VIA+D + P D++ + G R D
Sbjct: 257 FVE---GTKYRLRLI-NVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTDTLLIGIGQRYD 312
Query: 328 VIIHTNQSNNLYWMQAK--TLC----DSITAEAVLQYEGEKLTYVSKRPKS-DSFPRGKP 380
VI+ N + + YW++ T C ++ A +L+Y+ + P S + PRG
Sbjct: 313 VIVEANAAADNYWIRGNWGTTCSTNNEAANATGILRYDSSSI----ANPTSVGTTPRGTC 368
Query: 381 KD 382
+D
Sbjct: 369 ED 370
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 123/247 (49%), Gaps = 27/247 (10%)
Query: 93 ADGFE-RAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGV 151
DG + R +++ N Q P P I V KGD + + + N M + ++H+HG++Q T MDGV
Sbjct: 16 VDGLKSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGV 75
Query: 152 PMVTQCPIPSSTTFRYKFPA-MPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELY 210
P +TQCPI +T Y F GT++YHSH Q DG++G II+ D Y
Sbjct: 76 PFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIK----DDSFPYDY 131
Query: 211 DFDLYSHVIIVTDWMHSM-TD-SKFPGNTYNDTRIKP---DAILINGQNQNPKDNSPRVP 265
D +L + +++W H + TD +K + YN T +P + I+ N N
Sbjct: 132 DEEL---SLSLSEWYHDLVTDLTKSFMSVYNPTGAEPIPQNLIVNNTMNLT--------- 179
Query: 266 MHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDR 325
++VQ D YL+RI+ F IE H++ V+ DG E V D + + R
Sbjct: 180 ---WEVQPDTTYLLRIVNVGGFVSQY-FWIEDHEMTVVEIDGITTEKNVTDMLYITVAQR 235
Query: 326 VDVIIHT 332
V++HT
Sbjct: 236 YTVLVHT 242
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 392 FKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVD 439
++VQ D YL+RI+ F IE H++ V+ DG E V D
Sbjct: 180 WEVQPDTTYLLRIVNVGGFVSQY-FWIEDHEMTVVEIDGITTEKNVTD 226
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 123/247 (49%), Gaps = 12/247 (4%)
Query: 97 ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQ 156
+ ++ IN + GP+I GDT+ V V N+++ ++HWHG++QK T DG VT+
Sbjct: 54 KEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTE 113
Query: 157 CPIPSSTTFR-YKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDLY 215
CPIP R Y++ A GT +YHSH Q +G+ G++ I P + YD DL
Sbjct: 114 CPIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPASLP-----YDIDL- 167
Query: 216 SHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDK 275
V +TD+ + D T N+ D +LING NP N+ + K
Sbjct: 168 -GVFPITDYYYRAAD-DLVHFTQNNAPPFSDNVLINGTAVNP--NTGEGQYANVTLTPGK 223
Query: 276 RYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQS 335
R+ +RI+ S ++ H + VIA+D V + VDS+ L G R DV+I +++
Sbjct: 224 RHRLRILNTST-ENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRA 282
Query: 336 NNLYWMQ 342
+ YW
Sbjct: 283 PDNYWFN 289
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 123/247 (49%), Gaps = 12/247 (4%)
Query: 97 ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQ 156
+ ++ IN + GP+I GDT+ V V N+++ ++HWHG++QK T DG VT+
Sbjct: 54 KEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTE 113
Query: 157 CPIPSSTTFR-YKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDLY 215
CPIP R Y++ A GT +YHSH Q +G+ G++ I P + YD DL
Sbjct: 114 CPIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPASLP-----YDIDL- 167
Query: 216 SHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDK 275
V +TD+ + D T N+ D +LING NP N+ + K
Sbjct: 168 -GVFPITDYYYRAAD-DLVHFTQNNAPPFSDNVLINGTAVNP--NTGEGQYANVTLTPGK 223
Query: 276 RYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQS 335
R+ +RI+ S ++ H + VIA+D V + VDS+ L G R DV+I +++
Sbjct: 224 RHRLRILNTST-ENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRA 282
Query: 336 NNLYWMQ 342
+ YW
Sbjct: 283 PDNYWFN 289
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 122/247 (49%), Gaps = 12/247 (4%)
Query: 97 ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQ 156
+ ++ IN + GP+I GDT+ V V N+++ ++HWHG+ QK T DG VT+
Sbjct: 54 KEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTE 113
Query: 157 CPIPSSTTFR-YKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDLY 215
CPIP R Y++ A GT +YHSH Q +G+ G++ I P + YD DL
Sbjct: 114 CPIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPASLP-----YDIDL- 167
Query: 216 SHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDK 275
V +TD+ + D T N+ D +LING NP N+ + K
Sbjct: 168 -GVFPITDYYYRAAD-DLVHFTQNNAPPFSDNVLINGTAVNP--NTGEGQYANVTLTPGK 223
Query: 276 RYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQS 335
R+ +RI+ S ++ H + VIA+D V + VDS+ L G R DV+I +++
Sbjct: 224 RHRLRILNTST-ENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRA 282
Query: 336 NNLYWMQ 342
+ YW
Sbjct: 283 PDNYWFN 289
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 133/288 (46%), Gaps = 19/288 (6%)
Query: 85 CRRKGCVTADG-FERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQK 143
++ + DG + ++ +N ++ GP+I+ GD I V V N++ ++HWHG+ Q
Sbjct: 82 TEKENWIGPDGVLKNVVMLVNDKIIGPTIRANWGDNIEVTVINNLKTNGTSMHWHGLRQL 141
Query: 144 VTPWMDGVPMVTQCPIPSSTTFR-YKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKT 202
+ DG VT+CPIP + YKF A GT +YHSH Q +G+ G++ I P +
Sbjct: 142 GNVFNDGANGVTECPIPPKGGRKTYKFRATQYGTSWYHSHFSAQYGNGVVGTIQIDGPAS 201
Query: 203 ADPHAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSP 262
YD DL V + D+ + D + T ++ D +L NG ++P+ +
Sbjct: 202 LP-----YDIDL--GVFPLMDYYYRSAD-ELVHFTQSNGAPPSDNVLFNGTARHPETGAG 253
Query: 263 RVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFP 322
+ + + KR+ +RII S ++ H + VIA+D V V S+ L
Sbjct: 254 Q--WYNVTLTPGKRHRLRIINTST-DNHFQVSLVGHNMTVIATDMVPVNAFTVSSLFLAV 310
Query: 323 GDRVDVIIHTNQSNNLYWMQ---AKTLCDSITAE---AVLQYEGEKLT 364
G R DV I N YW LC S + A+ +Y+G T
Sbjct: 311 GQRYDVTIDANSPVGNYWFNVTFGDGLCGSSNNKFPAAIFRYQGAPAT 358
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 118/245 (48%), Gaps = 24/245 (9%)
Query: 101 LSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIP 160
+ N Q+P P I V +GD + V+V N M T+HWHG+ Q+ T DGVP TQ I
Sbjct: 25 FAFNGQVPAPLIHVMEGDDVTVNVTN-MTTLPHTIHWHGMLQRGTWQSDGVPHATQHAIE 83
Query: 161 SSTTFRYKFPAMPSGTFFYHSHVGLQK---MDGLEGSMIIRTPKTADPHAELYDFDLYSH 217
TF YKF A P+GT +YH HV + + M G+ G +I+ PK P + D +
Sbjct: 84 PGDTFTYKFKAEPAGTMWYHCHVNVNEHVTMRGMWGPLIVE-PKNPLPIEKTVTKD---Y 139
Query: 218 VIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRY 277
+++++DW+ S + G D D IN ++ + P +V++
Sbjct: 140 ILMLSDWVSSWANKPGEGGIPGDVF---DYYTINAKSF--PETQP------IRVKKGDVI 188
Query: 278 LMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVE-PLVVDSVTLFPGDRVDVIIHTNQSN 336
+R+IG + H Q+ DG ++ P+ D+V + PG+R DVI+ N N
Sbjct: 189 RLRLIGAGDHVHAI--HTHGHISQIAFKDGFPLDKPIKGDTVLIGPGERYDVIL--NMDN 244
Query: 337 NLYWM 341
WM
Sbjct: 245 PGLWM 249
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 116/244 (47%), Gaps = 37/244 (15%)
Query: 104 NRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSST 163
N +P P I+V +GD + + VKN + T+HWHGV V P DG P PI +
Sbjct: 76 NGLVPAPKIEVFEGDKLEILVKNKL-KEATTIHWHGV--PVPPDQDGSP---HDPILAGE 129
Query: 164 T--FRYKFPAMPSGTFFYHSH----VGLQKMDGLEGSMIIRTPKTADPHAELYDFDLYSH 217
+R++ P +GT++YH H Q GL G+ +I+ K A H + D
Sbjct: 130 ERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKD------ 183
Query: 218 VIIVTDWMHSMTDSKFPGNTYND--TRIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDK 275
++++D + +++ P N ND + + +LINGQ + P++ K+ ++
Sbjct: 184 -LMISD-LRLDENAQIPNNNLNDWLNGREGEFVLINGQFK------PKI-----KLATNE 230
Query: 276 RYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVV-DSVTLFPGDRVDVIIHTNQ 334
R +RI + A L I+ + ++ +DG +E + + + L P RV+V+I +
Sbjct: 231 R--IRIYNATA-ARYLNLRIQGAKFILVGTDGGLIEKTIYKEELFLSPASRVEVLIDAPK 287
Query: 335 SNNL 338
N
Sbjct: 288 DGNF 291
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 122/256 (47%), Gaps = 32/256 (12%)
Query: 95 GFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMV 154
G +L+ PGP+++V DT+ + ++N + + LHWHG+ ++P +D P +
Sbjct: 32 GQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLPE-PTNLHWHGL--PISPKVDD-PFL 87
Query: 155 TQCPIPSSTTFRYKFPAMPSGTFFYHSH----VGLQKMDGLEGSMIIRTPKTADPHAELY 210
+ P S T+ + P +GTF+YH H V Q GL G++++ + A P EL
Sbjct: 88 -EIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVESSLDAIP--ELR 144
Query: 211 DFDLYSHVIIVTDWMHSMTDSKFPGNTYND--TRIKPDAILINGQNQNPKDNSPRVPMHF 268
+ + H++++ D ++ + +T D + D +L+NG +
Sbjct: 145 EAE--EHLLVLKDL--ALQGGRPAPHTPMDWMNGKEGDLVLVNGA------------LRP 188
Query: 269 FKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAV-EPLVVDSVTLFPGDRVD 327
V + +R++ S A ++ H L +IA+DG + EPL V + L PG+R +
Sbjct: 189 TLVAQKATLRLRLLNASN-ARYYRLALQDHPLYLIAADGGFLEEPLEVSELLLAPGERAE 247
Query: 328 VIIHTNQSNNLYWMQA 343
V++ + + +QA
Sbjct: 248 VLVRLRKEGR-FLLQA 262
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 102 SINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPS 161
S N ++PGP++ +GD + + N T+H+HGV++ MDG P + I
Sbjct: 58 SYNGRIPGPTLWAREGDALRIHFTNAGAHPH-TIHFHGVHRAT---MDGTPGIGAGSIAP 113
Query: 162 STTFRYKFPAMPSGTFFYHSH---VGLQKMDGLEGSMIIRTPKTADPHAE 208
+F Y+F A P GT YH H + GL G I+ PK P A+
Sbjct: 114 GQSFTYEFDATPFGTHLYHCHQSPLAPHIAKGLYGGFIVE-PKEGRPPAD 162
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 109/266 (40%), Gaps = 53/266 (19%)
Query: 89 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWM 148
G T G N L GP++++ +G + VD+ N + + E TLHWHG+ +V +
Sbjct: 27 GQSTFGGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTE-ETTLHWHGL--EVPGEV 83
Query: 149 DGVPMVTQCPIPSSTTFRYKFPA-MPSGTFFYHSH----VGLQKMDGLEGSMIIRTPKTA 203
DG P Q IP P+ T ++H H G Q GL G ++I
Sbjct: 84 DGGP---QGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIED---- 136
Query: 204 DPHAELYDFDLYSHVIIVTDWMHS-----MTDSKFPGNTYNDTRIK---------PDAIL 249
D +++ W + D KF + D ++ D +L
Sbjct: 137 ---------DEILKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLL 187
Query: 250 INGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIF-TIEKHQLQVIASDGT 308
NG P+ +PR + +R++ G C A L F T + L VIASDG
Sbjct: 188 TNGAIY-PQHAAPRGWLR-----------LRLLNG-CNARSLNFATSDNRPLYVIASDGG 234
Query: 309 AV-EPLVVDSVTLFPGDRVDVIIHTN 333
+ EP+ V + + G+R +V++ N
Sbjct: 235 LLPEPVKVSELPVLMGERFEVLVEVN 260
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 110/268 (41%), Gaps = 53/268 (19%)
Query: 89 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWM 148
G T G N L GP++++ +G + VD+ N + + E TLHWHG+ +V +
Sbjct: 27 GQSTFGGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTE-ETTLHWHGL--EVPGEV 83
Query: 149 DGVPMVTQCPIPSSTTFRYKFPA-MPSGTFFYHSH----VGLQKMDGLEGSMIIRTPKTA 203
DG P Q IP P+ T ++H H G Q GL G ++I
Sbjct: 84 DGGP---QGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIED---- 136
Query: 204 DPHAELYDFDLYSHVIIVTDWMHS-----MTDSKFPGNTYNDTRIK---------PDAIL 249
D +++ W + D KF + D ++ D +L
Sbjct: 137 ---------DEILKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLL 187
Query: 250 INGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIF-TIEKHQLQVIASDGT 308
NG P+ +PR + +R++ G C A L F T + L VIASDG
Sbjct: 188 TNGAIY-PQHAAPRGWLR-----------LRLLNG-CNARSLNFATSDNRPLYVIASDGG 234
Query: 309 AV-EPLVVDSVTLFPGDRVDVIIHTNQS 335
+ EP+ V + + G+R +V++ N +
Sbjct: 235 LLPEPVKVSELPVLMGERFEVLVEVNDN 262
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 112/271 (41%), Gaps = 59/271 (21%)
Query: 89 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWM 148
G T G N L GP++++ +G + VD+ N + + E TLHWHG+ +V +
Sbjct: 27 GQSTFGGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTE-ETTLHWHGL--EVPGEV 83
Query: 149 DGVPMVTQCPIP----SSTTFRYKFPAMPSGTFFYHSH----VGLQKMDGLEGSMIIRTP 200
DG P Q IP S T PA T ++H H G Q GL G ++I
Sbjct: 84 DGGP---QGIIPPGGKRSVTLNVDQPA---ATCWFHPHQHGKTGRQVAMGLAGLVVIED- 136
Query: 201 KTADPHAELYDFDLYSHVIIVTDWMHS-----MTDSKFPGNTYNDTRIK---------PD 246
D +++ W + D KF + D ++ D
Sbjct: 137 ------------DEILKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGD 184
Query: 247 AILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIF-TIEKHQLQVIAS 305
+L NG P+ +PR + +R++ G C A L F T + L VIAS
Sbjct: 185 TLLTNGAIY-PQHAAPRGWLR-----------LRLLNG-CNARSLNFATSDNRPLYVIAS 231
Query: 306 DGTAV-EPLVVDSVTLFPGDRVDVIIHTNQS 335
DG + EP+ V + + G+R +V++ N +
Sbjct: 232 DGGLLPEPVKVSELPVLMGERFEVLVEVNDN 262
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 112/271 (41%), Gaps = 59/271 (21%)
Query: 89 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWM 148
G T G N L GP++++ +G + VD+ N + + E TLHWHG+ +V +
Sbjct: 27 GQSTFGGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTE-ETTLHWHGL--EVPGEV 83
Query: 149 DGVPMVTQCPIP----SSTTFRYKFPAMPSGTFFYHSH----VGLQKMDGLEGSMIIRTP 200
DG P Q IP S T PA T ++H H G Q GL G ++I
Sbjct: 84 DGGP---QGIIPPGGKRSVTLNVDQPA---ATCWFHPHQHGKTGRQVAMGLAGLVVIED- 136
Query: 201 KTADPHAELYDFDLYSHVIIVTDWMHS-----MTDSKFPGNTYNDTRIK---------PD 246
D +++ W + D KF + D ++ D
Sbjct: 137 ------------DEILKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGD 184
Query: 247 AILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIF-TIEKHQLQVIAS 305
+L NG P+ +PR + +R++ G C A L F T + L VIAS
Sbjct: 185 TLLTNGAIY-PQHAAPRGWLR-----------LRLLNG-CNARSLNFATSDNRPLYVIAS 231
Query: 306 DGTAV-EPLVVDSVTLFPGDRVDVIIHTNQS 335
DG + EP+ V + + G+R +V++ N +
Sbjct: 232 DGGLLPEPVKVSELPVLMGERFEVLVEVNDN 262
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 111/269 (41%), Gaps = 59/269 (21%)
Query: 89 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWM 148
G T G N L GP++++ +G + VD+ N + + E TLHWHG+ +V +
Sbjct: 27 GQSTFGGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTE-ETTLHWHGL--EVPGEV 83
Query: 149 DGVPMVTQCPIP----SSTTFRYKFPAMPSGTFFYHSH----VGLQKMDGLEGSMIIRTP 200
DG P Q IP S T PA T ++H H G Q GL G ++I
Sbjct: 84 DGGP---QGIIPPGGKRSVTLNVDQPA---ATCWFHPHQHGKTGRQVAMGLAGLVVIED- 136
Query: 201 KTADPHAELYDFDLYSHVIIVTDWMHS-----MTDSKFPGNTYNDTRIK---------PD 246
D +++ W + D KF + D ++ D
Sbjct: 137 ------------DEILKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGD 184
Query: 247 AILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIF-TIEKHQLQVIAS 305
+L NG P+ +PR + +R++ G C A L F T + L VIAS
Sbjct: 185 TLLTNGAIY-PQHAAPRGWLR-----------LRLLNG-CNARSLNFATSDNRPLYVIAS 231
Query: 306 DGTAV-EPLVVDSVTLFPGDRVDVIIHTN 333
DG + EP+ V + + G+R +V++ N
Sbjct: 232 DGGLLPEPVKVSELPVLMGERFEVLVEVN 260
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 112/271 (41%), Gaps = 59/271 (21%)
Query: 89 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWM 148
G T G N L GP++++ +G + VD+ N + + E TLHWHG+ +V +
Sbjct: 27 GQSTFGGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTE-ETTLHWHGL--EVPGEV 83
Query: 149 DGVPMVTQCPIP----SSTTFRYKFPAMPSGTFFYHSH----VGLQKMDGLEGSMIIRTP 200
DG P Q IP S T PA T ++H H G Q GL G ++I
Sbjct: 84 DGGP---QGIIPPGGKRSVTLNVDQPA---ATCWFHPHQHGKTGRQVAMGLAGLVVIED- 136
Query: 201 KTADPHAELYDFDLYSHVIIVTDWMHS-----MTDSKFPGNTYNDTRIK---------PD 246
D +++ W + D KF + D ++ D
Sbjct: 137 ------------DEILKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGD 184
Query: 247 AILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIF-TIEKHQLQVIAS 305
+L NG P+ +PR + +R++ G C A L F T + L VIAS
Sbjct: 185 TLLTNGAIY-PQHAAPRGWLR-----------LRLLNG-CNARSLNFATSDNRPLYVIAS 231
Query: 306 DGTAV-EPLVVDSVTLFPGDRVDVIIHTNQS 335
DG + EP+ V + + G+R +V++ N +
Sbjct: 232 DGGLLPEPVKVSELPVLMGERFEVLVEVNDN 262
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 111/269 (41%), Gaps = 59/269 (21%)
Query: 89 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWM 148
G T G N L GP++++ +G + VD+ N + + E TLHWHG+ +V +
Sbjct: 27 GQSTFGGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTE-ETTLHWHGL--EVPGEV 83
Query: 149 DGVPMVTQCPIP----SSTTFRYKFPAMPSGTFFYHSH----VGLQKMDGLEGSMIIRTP 200
DG P Q IP S T PA T ++H H G Q GL G ++I
Sbjct: 84 DGGP---QGIIPPGGKRSVTLNVDQPA---ATCWFHPHQHGKTGRQVAMGLAGLVVIED- 136
Query: 201 KTADPHAELYDFDLYSHVIIVTDWMHS-----MTDSKFPGNTYNDTRIK---------PD 246
D +++ W + D KF + D ++ D
Sbjct: 137 ------------DEILKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGD 184
Query: 247 AILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIF-TIEKHQLQVIAS 305
+L NG P+ +PR + +R++ G C A L F T + L VIAS
Sbjct: 185 TLLTNGAIY-PQHAAPRGWLR-----------LRLLNG-CNARSLNFATSDNRPLYVIAS 231
Query: 306 DGTAV-EPLVVDSVTLFPGDRVDVIIHTN 333
DG + EP+ V + + G+R +V++ N
Sbjct: 232 DGGLLPEPVKVSELPVLMGERFEVLVEVN 260
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 112/271 (41%), Gaps = 59/271 (21%)
Query: 89 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWM 148
G T G N L GP++++ +G + VD+ N + + E TLHWHG+ +V +
Sbjct: 27 GQSTFGGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTE-ETTLHWHGL--EVPGEV 83
Query: 149 DGVPMVTQCPIP----SSTTFRYKFPAMPSGTFFYHSH----VGLQKMDGLEGSMIIRTP 200
DG P Q IP S T PA T ++H H G Q GL G ++I
Sbjct: 84 DGGP---QGIIPPGGKRSVTLNVDQPA---ATCWFHPHQHGKTGRQVAMGLAGLVVIED- 136
Query: 201 KTADPHAELYDFDLYSHVIIVTDWMHS-----MTDSKFPGNTYNDTRIK---------PD 246
D +++ W + D KF + D ++ D
Sbjct: 137 ------------DEILKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGD 184
Query: 247 AILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIF-TIEKHQLQVIAS 305
+L NG P+ +PR + +R++ G C A L F T + L VIAS
Sbjct: 185 TLLTNGAIY-PQHAAPRGWLR-----------LRLLNG-CNARSLNFATSDNRPLYVIAS 231
Query: 306 DGTAV-EPLVVDSVTLFPGDRVDVIIHTNQS 335
DG + EP+ V + + G+R +V++ N +
Sbjct: 232 DGGLLPEPVKVSELPVLMGERFEVLVEVNDN 262
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 25/149 (16%)
Query: 68 ATVGPACADCLKGNQKACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNH 127
A PA + + A R G G E+ +I PGP I++ +GDT+ ++ +N
Sbjct: 4 AKTAPAGGEVKRIKLYAERLGGGQMGYGLEKGKATI----PGPLIELNEGDTLHIEFENT 59
Query: 128 MIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSST---TFRYKFP---------AMPSG 175
M D V+LH HG+ +++ DG P T T+R P A +G
Sbjct: 60 M-DVPVSLHVHGLDYEIS--SDGTKQSRSDVEPGGTRTYTWRTHVPGRRADGTWRAGSAG 116
Query: 176 TFFYHSH-VGLQK-----MDGLEGSMIIR 198
+ YH H VG + +GL G +I+R
Sbjct: 117 YWHYHDHVVGTEHGTGGIRNGLYGPVIVR 145
>pdb|4GY4|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 278
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 33/147 (22%)
Query: 95 GFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMV 154
GFE+ S+ PGP I+V +GDT+ ++ N M D +LH HG+ +++ DG M
Sbjct: 28 GFEKGKASV----PGPLIEVNEGDTLHIEFTNTM-DVRASLHVHGLDAEISS--DGTAMN 80
Query: 155 TQCPIPSST---TFRYKFPAM---------PSGTFFYHSH-VGLQK-----MDGLEGSMI 196
P T T+R P +G + YH H VG + +GL G +I
Sbjct: 81 KSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVI 140
Query: 197 IRTPKTADPHAELYDFDLYSHVIIVTD 223
+R P A +H I+ D
Sbjct: 141 VRRKGDVLPDA--------THTIVFND 159
>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
Length = 343
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 33/147 (22%)
Query: 95 GFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMV 154
GFE+ S+ PGP I+V +GDT+ ++ N M D +LH HG+ +++ DG M
Sbjct: 66 GFEKGKASV----PGPLIEVNEGDTLHIEFTNTM-DVRASLHVHGLDYEISS--DGTAMN 118
Query: 155 TQCPIPSST---TFRYKFPAM---------PSGTFFYHSH-VGLQK-----MDGLEGSMI 196
P T T+R P +G + YH H VG + +GL G +I
Sbjct: 119 KSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVI 178
Query: 197 IRTPKTADPHAELYDFDLYSHVIIVTD 223
+R P A +H I+ D
Sbjct: 179 VRRKGDVLPDA--------THTIVFND 197
>pdb|3KW8|A Chain A, Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A
Resolution
Length = 276
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 33/147 (22%)
Query: 95 GFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMV 154
GFE+ S+ PGP I+V +GDT+ ++ N M D +LH HG+ +++ DG M
Sbjct: 25 GFEKGKASV----PGPLIEVNEGDTLHIEFTNTM-DVRASLHVHGLDYEISS--DGTAMN 77
Query: 155 TQCPIPSST---TFRYKFPAM---------PSGTFFYHSH-VGLQK-----MDGLEGSMI 196
P T T+R P +G + YH H VG + +GL G +I
Sbjct: 78 KSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVI 137
Query: 197 IRTPKTADPHAELYDFDLYSHVIIVTD 223
+R P A +H I+ D
Sbjct: 138 VRRKGDVLPDA--------THTIVFND 156
>pdb|3T9W|A Chain A, Small Laccase From Amycolatopsis Sp. Atcc 39116
pdb|3TA4|F Chain F, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|D Chain D, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|E Chain E, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
Length = 299
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 107 LPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFR 166
+PGP +++ +GDT+ +D+ N DR ++LH HGV V DG M +P T R
Sbjct: 55 VPGPVLEMWEGDTLEIDLVN-TTDRVLSLHPHGVDYDVNS--DGTLMNGSAVMPGQTR-R 110
Query: 167 YKFPAMPSGTFFYHSHVGLQKMDG 190
Y + SHVG ++ DG
Sbjct: 111 YT----------WRSHVGYRRADG 124
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 33/147 (22%)
Query: 95 GFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMV 154
GFE+ S+ PGP I+V +GDT+ ++ N M D +LH HG+ +++ DG M
Sbjct: 29 GFEKGKASV----PGPLIEVNEGDTLHIEFTNTM-DVRASLHVHGLDFEISS--DGTAMN 81
Query: 155 TQCPIPSST---TFRYKFPAM---------PSGTFFYHSH-VGLQK-----MDGLEGSMI 196
P T T+R P +G + YH H VG + +GL G +I
Sbjct: 82 KSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVI 141
Query: 197 IRTPKTADPHAELYDFDLYSHVIIVTD 223
+R P A +H I+ D
Sbjct: 142 VRRKGDVLPDA--------THTIVFND 160
>pdb|2ZOO|A Chain A, Crystal Structure Of Nitrite Reductase From
Pseudoalteromonas Haloplanktis Tac125
Length = 442
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 85 CRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNH---MIDREVTLHWHGVY 141
R + ADG E S +PG I+V +GD I ++ NH + + LH
Sbjct: 35 TREQVGRIADGVEYVFWSFGETVPGSFIRVREGDEIEFNLSNHPSSKMPHNIDLH----- 89
Query: 142 QKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH---SHVGLQKMDGLEGSMIIR 198
VT G P +ST + F A+ G + YH + VG+ +G+ G +I+
Sbjct: 90 -AVTGPGGGAESSFTAPGHTST---FNFKALNPGLYIYHCATAPVGMHIANGMYG-LILV 144
Query: 199 TPK 201
PK
Sbjct: 145 EPK 147
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 26/147 (17%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDSGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGSMII- 197
T + G + P +T +F A SGTF YH V + G+ G++++
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPSGMVPWHVVSGMSGTLMVL 151
Query: 198 -----RTPKTADPHAE----LYDFDLY 215
+ P A H + + +FDLY
Sbjct: 152 PRDGLKDPAGAPLHYDRAYTIGEFDLY 178
>pdb|2UXT|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXT|B Chain B, Sufi Protein From Escherichia Coli
pdb|2UXV|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXV|B Chain B, Sufi Protein From Escherichia Coli
Length = 451
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 103/256 (40%), Gaps = 38/256 (14%)
Query: 95 GFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMV 154
G ++ IN + GP+I+V KGD + + N + + V++ G+ Q P M G P
Sbjct: 35 GTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTE-NVSMTVAGL-QVPGPLMGG-PAR 91
Query: 155 TQCPIPSSTTFRYKFPAMP----SGTFFYHSH----VGLQKMDGLEGSMIIRTPKTAD-P 205
P P +P + T +YH++ Q +GL G ++ + P
Sbjct: 92 MMSPNADWA------PVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLP 145
Query: 206 HAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPR-- 263
Y D + VII + + ++ N D +L+NG Q+P R
Sbjct: 146 IPNHYGVDDFP-VIIQDKRLDNFGTPEY--NEPGSGGFVGDTLLVNGV-QSPYVEVSRGW 201
Query: 264 VPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASD-GTAVEPLVVDSVTLFP 322
V + +RY +++ G L VI+ D G P+ V ++L P
Sbjct: 202 VRLRLLNASNSRRYQLQMNDG-------------RPLHVISGDQGFLPAPVSVKQLSLAP 248
Query: 323 GDRVDVIIHTNQSNNL 338
G+R ++++ + + +
Sbjct: 249 GERREILVDMSNGDEV 264
>pdb|2JFC|A Chain A, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|B Chain B, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|C Chain C, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|D Chain D, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|E Chain E, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|F Chain F, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
Length = 335
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 40 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 93
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH V + GL G+ M++
Sbjct: 94 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPEGMVPWHVVSGLSGTLMVL 150
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 151 PRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 210
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 211 IVFNGK 216
>pdb|2BP0|A Chain A, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH V + GL G+ M++
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPEGMVPWHVVSGLSGTLMVL 151
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 152 PRDGLKDPEGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 212 IVFNGK 217
>pdb|2BP0|B Chain B, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH V + GL G+ M++
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPEGMVPWHVVSGLSGTLMVL 151
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 152 PRDGLKDPEGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 212 IVFNGK 217
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes Xylosoxidans
Nitrite Reductase
Length = 336
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVNFH------ 94
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH V + G+ G+ M++
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVL 151
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 152 PRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 212 IVFNGK 217
>pdb|1OE2|A Chain A, Atomic Resolution Structure Of D92e Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVEFH------ 94
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH V + G+ G+ M++
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVL 151
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 152 PRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 212 IVFNGK 217
>pdb|4AKO|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498l Mutant
Length = 507
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 104/271 (38%), Gaps = 58/271 (21%)
Query: 100 ILSINRQLPGPSIQVCKGDTIIVDVKNHM-------IDREV----------TLHWHGVYQ 142
+ N PGP+I+V + + + V N++ ID + +H HG
Sbjct: 48 LWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSEEPEVKTVVHLHG--- 104
Query: 143 KVTP-WMDGVPMVT-----QCPIPSSTTFRYKFPAMPSGT-FFYHSH-VGLQKMD---GL 191
VTP DG P + P Y +P G +YH H + L +++ GL
Sbjct: 105 GVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGL 164
Query: 192 EGSMIIRTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKF-------PGNTYNDTRIK 244
G+ II PK ++D+ +++TD + S F P + + I
Sbjct: 165 VGAYIIHDPKEKRLKLPSDEYDV---PLLITDRTINEDGSLFYPSAPENPSPSLPNPSIV 221
Query: 245 P----DAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQL 300
P + IL+NG+ + PR +Y R+I S +
Sbjct: 222 PAFCGETILVNGKVWPYLEVEPR------------KYRFRVINASNTRTYNLSLDNGGDF 269
Query: 301 QVIASDGTAVEPLV-VDSVTLFPGDRVDVII 330
I SDG + V ++S +L P +R D+II
Sbjct: 270 IQIGSDGGLLPRSVKLNSFSLAPAERYDIII 300
>pdb|2BO0|A Chain A, Crystal Structure Of The C130a Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 73/186 (39%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH----VGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH+ V + G+ G+ M++
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHAAPEGMVPWHVVSGMSGTLMVL 151
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 152 PRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 212 IVFNGK 217
>pdb|1WA1|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
pdb|1WA2|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase With Nitrite Bound
Length = 336
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH V + G+ G+ M++
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVL 151
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 152 PRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 212 IVFNGK 217
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH V + G+ G+ M++
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVL 151
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 152 PRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 212 IVFNGK 217
>pdb|2XXF|A Chain A, Cu Metallated H254f Mutant Of Nitrite Reductase
pdb|2XXF|B Chain B, Cu Metallated H254f Mutant Of Nitrite Reductase
Length = 336
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH V + G+ G+ M++
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVL 151
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 152 PRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 212 IVFNGK 217
>pdb|2XX0|A Chain A, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
pdb|2XX0|B Chain B, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFH------ 94
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH V + G+ G+ M++
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVL 151
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 152 PRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 212 IVFNGK 217
>pdb|2XXG|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
pdb|2XXG|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
Length = 336
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFH------ 94
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH V + G+ G+ M++
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVL 151
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 152 PRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 212 IVFNGK 217
>pdb|1OE1|A Chain A, Atomic Resolution Structure Of The Wildtype Native Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1OE3|A Chain A, Atomic Resolution Structure Of 'half Apo' Nir
Length = 336
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH V + G+ G+ M++
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVL 151
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 152 PRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 212 IVFNGK 217
>pdb|2XX1|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|B Chain B, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|D Chain D, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|E Chain E, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|F Chain F, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFH------ 94
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH V + G+ G+ M++
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVL 151
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 152 PRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 212 IVFNGK 217
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9 A Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
pdb|2VM3|A Chain A, Structure Of Alcaligenes Xylosoxidans In Space Group R3 -
1 Of 2
pdb|2VM4|A Chain A, Structure Of Alcaligenes Xylosoxidans Nitrite Reductase In
Space Group R3 - 2 Of 2
pdb|2VW4|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW4|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW6|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW6|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW7|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2VW7|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2ZON|A Chain A, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|B Chain B, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|C Chain C, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
Length = 336
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH V + G+ G+ M++
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVL 151
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 152 PRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 212 IVFNGK 217
>pdb|2VN3|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 337
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 42 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 95
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH V + G+ G+ M++
Sbjct: 96 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVL 152
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 153 PRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 212
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 213 IVFNGK 218
>pdb|2XWZ|A Chain A, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|B Chain B, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|C Chain C, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|D Chain D, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|E Chain E, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|F Chain F, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH V + G+ G+ M++
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVL 151
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 152 PRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 212 IVFNGK 217
>pdb|1BQ5|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
Length = 342
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 47 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 100
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH V + G+ G+ M++
Sbjct: 101 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVL 157
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 158 PRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 217
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 218 IVFNGK 223
>pdb|1WA0|X Chain X, Crystal Structure Of W138h Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH V + G+ G+ M++
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPEGMVPHHVVSGMSGTLMVL 151
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 152 PRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 212 IVFNGK 217
>pdb|4AKQ|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498d Mutant
Length = 513
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 104/275 (37%), Gaps = 62/275 (22%)
Query: 100 ILSINRQLPGPSIQVCKGDTIIVDVKNHM-------IDREV--------------TLHWH 138
+ N PGP+I+V + + + V N++ ID + +H H
Sbjct: 48 LWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLH 107
Query: 139 GVYQKVTP-WMDGVPMVT-----QCPIPSSTTFRYKFPAMPSGT-FFYHSH-VGLQKMD- 189
G VTP DG P + P Y +P G +YH H + L +++
Sbjct: 108 G---GVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNV 164
Query: 190 --GLEGSMIIRTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKF-------PGNTYND 240
GL G+ II PK ++D+ +++TD + S F P + +
Sbjct: 165 YAGLVGAYIIHDPKEKRLKLPSDEYDV---PLLITDRTINEDGSLFYPSAPENPSPSLPN 221
Query: 241 TRIKP----DAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIE 296
I P + IL+NG+ + PR +Y R+I S +
Sbjct: 222 PSIVPAFCGETILVNGKVWPYLEVEPR------------KYRFRVINASNTRTYNLSLDN 269
Query: 297 KHQLQVIASDGTAVEPLV-VDSVTLFPGDRVDVII 330
I SDG + V ++S +L P +R D+II
Sbjct: 270 GGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIII 304
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH V + G G+ M++
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPEGMVPWHVVSGASGTLMVL 151
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 152 PRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 212 IVFNGK 217
>pdb|2WSD|A Chain A, Proximal Mutations At The Type 1 Cu Site Of Cota-Laccase:
I494a Mutant
Length = 513
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 104/275 (37%), Gaps = 62/275 (22%)
Query: 100 ILSINRQLPGPSIQVCKGDTIIVDVKNHM-------IDREV--------------TLHWH 138
+ N PGP+I+V + + + V N++ ID + +H H
Sbjct: 48 LWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLH 107
Query: 139 GVYQKVTP-WMDGVPMVT-----QCPIPSSTTFRYKFPAMPSGT-FFYHSH-VGLQKMD- 189
G VTP DG P + P Y +P G +YH H + L +++
Sbjct: 108 G---GVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNV 164
Query: 190 --GLEGSMIIRTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKF-------PGNTYND 240
GL G+ II PK ++D+ +++TD + S F P + +
Sbjct: 165 YAGLVGAYIIHDPKEKRLKLPSDEYDV---PLLITDRTINEDGSLFYPSAPENPSPSLPN 221
Query: 241 TRIKP----DAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIE 296
I P + IL+NG+ + PR +Y R+I S +
Sbjct: 222 PSIVPAFCGETILVNGKVWPYLEVEPR------------KYRFRVINASNTRTYNLSLDN 269
Query: 297 KHQLQVIASDGTAVEPLV-VDSVTLFPGDRVDVII 330
I SDG + V ++S +L P +R D+II
Sbjct: 270 GGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIII 304
>pdb|1GSK|A Chain A, Crystal Structure Of Cota, An Endospore Coat Protein From
Bacillus Subtilis
pdb|1OF0|A Chain A, Crystal Structure Of Bacillus Subtilis Cota After 1h
Soaking With Ebs
pdb|1W6L|A Chain A, 3d Structure Of Cota Incubated With Cucl2
pdb|1W6W|A Chain A, 3d Structure Of Cota Incubated With Sodium Azide
pdb|1W8E|A Chain A, 3d Structure Of Cota Incubated With Hydrogen Peroxide
pdb|2BHF|A Chain A, 3d Structure Of The Reduced Form Of Cota
pdb|2X88|A Chain A, Crystal Structure Of Holocota
pdb|3ZDW|A Chain A, Substrate And Dioxygen Binding To The Endospore Coat
Laccase Cota From Bacillus Subtilis
Length = 513
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 104/275 (37%), Gaps = 62/275 (22%)
Query: 100 ILSINRQLPGPSIQVCKGDTIIVDVKNHM-------IDREV--------------TLHWH 138
+ N PGP+I+V + + + V N++ ID + +H H
Sbjct: 48 LWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLH 107
Query: 139 GVYQKVTP-WMDGVPMVT-----QCPIPSSTTFRYKFPAMPSGT-FFYHSH-VGLQKMD- 189
G VTP DG P + P Y +P G +YH H + L +++
Sbjct: 108 G---GVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNV 164
Query: 190 --GLEGSMIIRTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKF-------PGNTYND 240
GL G+ II PK ++D+ +++TD + S F P + +
Sbjct: 165 YAGLVGAYIIHDPKEKRLKLPSDEYDV---PLLITDRTINEDGSLFYPSAPENPSPSLPN 221
Query: 241 TRIKP----DAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIE 296
I P + IL+NG+ + PR +Y R+I S +
Sbjct: 222 PSIVPAFCGETILVNGKVWPYLEVEPR------------KYRFRVINASNTRTYNLSLDN 269
Query: 297 KHQLQVIASDGTAVEPLV-VDSVTLFPGDRVDVII 330
I SDG + V ++S +L P +R D+II
Sbjct: 270 GGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIII 304
>pdb|2X87|A Chain A, Crystal Structure Of The Reconstituted Cota
Length = 513
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 104/275 (37%), Gaps = 62/275 (22%)
Query: 100 ILSINRQLPGPSIQVCKGDTIIVDVKNHM-------IDREV--------------TLHWH 138
+ N PGP+I+V + + + V N++ ID + +H H
Sbjct: 48 LWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLH 107
Query: 139 GVYQKVTP-WMDGVPMVT-----QCPIPSSTTFRYKFPAMPSGT-FFYHSH-VGLQKMD- 189
G VTP DG P + P Y +P G +YH H + L +++
Sbjct: 108 G---GVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNV 164
Query: 190 --GLEGSMIIRTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKF-------PGNTYND 240
GL G+ II PK ++D+ +++TD + S F P + +
Sbjct: 165 YAGLVGAYIIHDPKEKRLKLPSDEYDV---PLLITDRTINEDGSLFYPSAPENPSPSLPN 221
Query: 241 TRIKP----DAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIE 296
I P + IL+NG+ + PR +Y R+I S +
Sbjct: 222 PSIVPAFCGETILVNGKVWPYLEVEPR------------KYRFRVINASNTRTYNLSLDN 269
Query: 297 KHQLQVIASDGTAVEPLV-VDSVTLFPGDRVDVII 330
I SDG + V ++S +L P +R D+II
Sbjct: 270 GGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIII 304
>pdb|4AKP|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site:e498t Mutant
Length = 513
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 104/275 (37%), Gaps = 62/275 (22%)
Query: 100 ILSINRQLPGPSIQVCKGDTIIVDVKNHM-------IDREV--------------TLHWH 138
+ N PGP+I+V + + + V N++ ID + +H H
Sbjct: 48 LWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLH 107
Query: 139 GVYQKVTP-WMDGVPMVT-----QCPIPSSTTFRYKFPAMPSGT-FFYHSH-VGLQKMD- 189
G VTP DG P + P Y +P G +YH H + L +++
Sbjct: 108 G---GVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNV 164
Query: 190 --GLEGSMIIRTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKF-------PGNTYND 240
GL G+ II PK ++D+ +++TD + S F P + +
Sbjct: 165 YAGLVGAYIIHDPKEKRLKLPSDEYDV---PLLITDRTINEDGSLFYPSAPENPSPSLPN 221
Query: 241 TRIKP----DAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIE 296
I P + IL+NG+ + PR +Y R+I S +
Sbjct: 222 PSIVPAFCGETILVNGKVWPYLEVEPR------------KYRFRVINASNTRTYNLSLDN 269
Query: 297 KHQLQVIASDGTAVEPLV-VDSVTLFPGDRVDVII 330
I SDG + V ++S +L P +R D+II
Sbjct: 270 GGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIII 304
>pdb|2DV6|A Chain A, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|B Chain B, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|C Chain C, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|D Chain D, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|E Chain E, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|F Chain F, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
Length = 447
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 70 VGPACADCLKGNQKACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNH 127
+GP A ++ + + KG + D + N ++PGP ++V GDT+ + +KNH
Sbjct: 156 IGPRQAKTVRIDLETVEVKGQLD-DNTTYTYWTFNGKVPGPFLRVRVGDTVELHLKNH 212
>pdb|1KBW|A Chain A, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|B Chain B, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|C Chain C, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|D Chain D, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|E Chain E, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|F Chain F, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBV|A Chain A, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|B Chain B, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|C Chain C, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|D Chain D, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|E Chain E, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|F Chain F, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
Length = 327
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Query: 94 DGFERAILSINRQLPGPSIQVCKGDTIIVDVKNH---MIDREVTLHWHGVYQKVTPWMDG 150
DG E + + +PG I+V +GDT+ V+ N+ + V H
Sbjct: 54 DGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFT 113
Query: 151 VPMVTQCPIPSSTTFRYKFPAMPSGTFFYH---SHVGLQKMDGLEGSMIIRTPKTADP 205
P T +TF +K A+ G + YH + VG+ +G+ G +I+ PK P
Sbjct: 114 APGRT-------STFSFK--ALQPGLYIYHCAVAPVGMHIANGMYG-LILVEPKEGLP 161
>pdb|2BP8|A Chain A, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH V + G G+ M++
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPEGMVPWHVVSGQSGTLMVL 151
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 152 PRDGLKDPEGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 212 IVFNGK 217
>pdb|2BP8|B Chain B, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF YH V + G G+ M++
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHCAPEGMVPWHVVSGQSGTLMVL 151
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 152 PRDGLKDPEGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 212 IVFNGK 217
>pdb|2VMJ|A Chain A, Type 1 Copper-Binding Loop Of Nitrite Reductase Mutant:
130- Capegmvpwhvvsgm-144 To 130-Ctphpfm-136
Length = 329
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 42 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 95
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 180
T + G + P +T +F A SGTF YH
Sbjct: 96 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 130
>pdb|1WAE|A Chain A, Crystal Structure Of H129v Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 27/186 (14%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFY----HSHVGLQKMDGLEGS-MII 197
T + G + P +T +F A SGTF Y V + G+ G+ M++
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYVCAPEGMVPWHVVSGMSGTLMVL 151
Query: 198 RTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFP-----GNTYNDT-----RIKPDA 247
DP + +D + ++ D K+ +Y DT + P
Sbjct: 152 PRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
Query: 248 ILINGQ 253
I+ NG+
Sbjct: 212 IVFNGK 217
>pdb|1NDR|A Chain A, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|B Chain B, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|C Chain C, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|A Chain A, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|B Chain B, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|C Chain C, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 330
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 16/119 (13%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 142
+K DG ++ N +PGP++ V +GD I +V+ + + V H
Sbjct: 37 EKKMVADDDGTTAQAMTFNGSVPGPTLVVHEGDYIELTLVNPATNSMPHNVDFHAATGAL 96
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGSMII 197
VP R+K A SGTF YH V + G+ G++++
Sbjct: 97 GGAGLTQVVPG-------QEAVLRFK--ADRSGTFVYHCAPAGMVPWHVVSGMNGALMV 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,060,674
Number of Sequences: 62578
Number of extensions: 602072
Number of successful extensions: 1369
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1163
Number of HSP's gapped (non-prelim): 117
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)