Query psy16562
Match_columns 445
No_of_seqs 328 out of 2321
Neff 7.8
Searched_HMMs 46136
Date Sat Aug 17 00:22:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02835 oxidoreductase 100.0 1.6E-69 3.4E-74 568.9 40.2 266 55-361 27-297 (539)
2 PLN02991 oxidoreductase 100.0 1.5E-68 3.3E-73 559.3 40.5 268 55-362 26-298 (543)
3 PLN02168 copper ion binding / 100.0 2.4E-68 5.2E-73 558.7 41.9 270 55-362 24-301 (545)
4 PLN02354 copper ion binding / 100.0 2.2E-68 4.9E-73 561.0 38.8 275 55-362 25-303 (552)
5 PLN00044 multi-copper oxidase- 100.0 6.8E-68 1.5E-72 557.6 40.3 279 55-362 25-318 (596)
6 PLN02792 oxidoreductase 100.0 1.4E-67 3E-72 552.7 40.5 270 56-362 15-289 (536)
7 TIGR03389 laccase laccase, pla 100.0 4.8E-67 1E-71 553.7 41.1 278 56-362 2-287 (539)
8 TIGR03388 ascorbase L-ascorbat 100.0 3.4E-66 7.3E-71 547.0 41.6 278 57-361 1-300 (541)
9 PLN02191 L-ascorbate oxidase 100.0 1.5E-65 3.3E-70 542.9 41.7 281 55-362 21-324 (574)
10 TIGR03390 ascorbOXfungal L-asc 100.0 3.6E-65 7.8E-70 537.9 42.0 264 90-361 19-301 (538)
11 PLN02604 oxidoreductase 100.0 1.5E-64 3.3E-69 536.1 41.2 281 54-361 21-321 (566)
12 KOG1263|consensus 100.0 7.1E-63 1.5E-67 514.3 38.8 273 54-360 25-307 (563)
13 TIGR01480 copper_res_A copper- 100.0 2.8E-61 6.1E-66 508.7 39.2 264 57-361 45-352 (587)
14 PRK10965 multicopper oxidase; 100.0 1.6E-60 3.4E-65 499.2 41.1 328 94-445 61-483 (523)
15 PRK10883 FtsI repressor; Provi 100.0 1.5E-57 3.3E-62 472.6 39.2 325 93-444 60-428 (471)
16 TIGR02376 Cu_nitrite_red nitri 100.0 2.3E-47 5E-52 376.9 26.9 265 53-362 23-299 (311)
17 COG2132 SufI Putative multicop 100.0 3.7E-45 8E-50 380.4 37.5 332 88-445 42-412 (451)
18 PF07732 Cu-oxidase_3: Multico 100.0 1.3E-36 2.7E-41 258.3 10.8 109 91-200 7-116 (117)
19 PF00394 Cu-oxidase: Multicopp 99.9 7.2E-26 1.6E-30 203.3 15.0 145 216-361 2-159 (159)
20 PLN02354 copper ion binding / 99.9 2.5E-22 5.3E-27 212.2 16.4 183 242-445 43-261 (552)
21 PLN02168 copper ion binding / 99.9 4.9E-22 1.1E-26 209.2 15.8 183 242-445 42-255 (545)
22 PLN02835 oxidoreductase 99.9 9E-22 2E-26 207.6 17.3 180 243-445 46-256 (539)
23 PLN02792 oxidoreductase 99.9 6.4E-22 1.4E-26 208.2 16.1 183 242-445 32-247 (536)
24 PLN00044 multi-copper oxidase- 99.9 1.1E-21 2.4E-26 207.6 17.6 181 245-445 48-271 (596)
25 TIGR03389 laccase laccase, pla 99.9 1.6E-21 3.5E-26 206.9 18.3 185 242-445 19-241 (539)
26 PLN02991 oxidoreductase 99.9 9.7E-22 2.1E-26 206.7 16.3 182 242-445 44-256 (543)
27 PLN02191 L-ascorbate oxidase 99.9 4E-21 8.7E-26 204.3 18.9 184 242-445 39-280 (574)
28 TIGR03388 ascorbase L-ascorbat 99.9 7.9E-21 1.7E-25 201.6 18.5 185 241-445 16-257 (541)
29 PLN02604 oxidoreductase 99.9 9E-21 2E-25 201.8 18.8 184 242-445 40-278 (566)
30 TIGR03390 ascorbOXfungal L-asc 99.8 1.9E-20 4.1E-25 198.3 17.0 186 242-445 24-253 (538)
31 KOG1263|consensus 99.8 5.2E-20 1.1E-24 193.0 18.6 181 244-445 46-263 (563)
32 TIGR03095 rusti_cyanin rusticy 99.8 5E-20 1.1E-24 162.4 10.9 106 92-198 35-148 (148)
33 TIGR01480 copper_res_A copper- 99.8 2E-19 4.3E-24 190.9 16.7 182 244-445 63-314 (587)
34 PRK10965 multicopper oxidase; 99.8 3.5E-18 7.6E-23 179.9 16.0 176 245-445 65-278 (523)
35 PRK10883 FtsI repressor; Provi 99.7 4.4E-17 9.5E-22 170.0 17.9 177 244-445 64-275 (471)
36 TIGR02376 Cu_nitrite_red nitri 99.7 1.6E-16 3.5E-21 157.3 15.2 181 243-445 45-258 (311)
37 COG2132 SufI Putative multicop 99.5 1.5E-12 3.2E-17 136.0 17.2 179 244-445 51-253 (451)
38 PF07732 Cu-oxidase_3: Multico 99.2 6.4E-12 1.4E-16 106.8 5.2 95 245-357 14-114 (117)
39 TIGR03096 nitroso_cyanin nitro 99.1 7.6E-10 1.6E-14 94.9 10.2 97 55-183 22-120 (135)
40 PF07731 Cu-oxidase_2: Multico 98.8 5.8E-09 1.3E-13 91.0 6.2 90 108-199 32-136 (138)
41 PF00394 Cu-oxidase: Multicopp 98.8 5.4E-09 1.2E-13 93.8 5.9 56 389-445 59-114 (159)
42 PF07731 Cu-oxidase_2: Multico 98.7 2.9E-07 6.2E-12 80.3 11.5 78 266-346 33-121 (138)
43 TIGR03095 rusti_cyanin rusticy 98.3 4.7E-06 1E-10 73.7 9.6 99 241-356 37-147 (148)
44 TIGR02656 cyanin_plasto plasto 98.2 5.4E-06 1.2E-10 68.3 8.3 84 107-198 14-99 (99)
45 PF00127 Copper-bind: Copper b 98.1 1.1E-05 2.4E-10 66.3 6.9 83 109-198 16-99 (99)
46 PRK02710 plastocyanin; Provisi 98.0 3.5E-05 7.6E-10 65.7 8.6 76 107-198 44-119 (119)
47 TIGR03096 nitroso_cyanin nitro 97.8 5.4E-05 1.2E-09 65.2 7.2 72 246-346 49-121 (135)
48 PF13473 Cupredoxin_1: Cupredo 97.7 4.1E-05 8.9E-10 63.5 4.9 83 97-197 22-104 (104)
49 TIGR02657 amicyanin amicyanin. 97.7 0.00023 4.9E-09 56.6 8.5 74 109-198 10-83 (83)
50 PRK02888 nitrous-oxide reducta 97.7 0.00019 4E-09 76.4 10.2 96 91-199 534-634 (635)
51 TIGR02375 pseudoazurin pseudoa 97.4 0.00088 1.9E-08 56.7 8.1 76 109-201 14-90 (116)
52 TIGR03094 sulfo_cyanin sulfocy 97.2 0.0038 8.3E-08 56.0 10.5 96 101-200 75-187 (195)
53 TIGR03102 halo_cynanin halocya 97.2 0.0026 5.7E-08 53.7 9.0 77 107-198 39-115 (115)
54 COG3794 PetE Plastocyanin [Ene 97.1 0.0034 7.3E-08 53.8 8.4 75 110-199 54-128 (128)
55 PF06525 SoxE: Sulfocyanin (So 97.0 0.0088 1.9E-07 54.7 10.8 101 99-200 74-188 (196)
56 PF13473 Cupredoxin_1: Cupredo 96.5 0.015 3.3E-07 48.0 8.4 61 267-346 35-95 (104)
57 TIGR02656 cyanin_plasto plasto 96.3 0.019 4.1E-07 47.1 7.6 79 266-353 16-95 (99)
58 PRK02888 nitrous-oxide reducta 95.5 0.062 1.3E-06 57.7 9.2 67 264-347 552-619 (635)
59 PF06525 SoxE: Sulfocyanin (So 95.2 0.17 3.6E-06 46.4 9.7 88 247-346 75-172 (196)
60 PRK02710 plastocyanin; Provisi 94.5 0.21 4.5E-06 42.4 7.9 70 266-354 46-116 (119)
61 PF00127 Copper-bind: Copper b 93.5 0.19 4.2E-06 41.0 5.8 77 264-355 14-97 (99)
62 COG4454 Uncharacterized copper 92.2 0.74 1.6E-05 40.6 7.7 76 266-346 62-143 (158)
63 PF00116 COX2: Cytochrome C ox 92.1 1.7 3.6E-05 37.0 9.7 61 267-347 46-106 (120)
64 PF00116 COX2: Cytochrome C ox 90.7 1.6 3.6E-05 37.0 8.3 72 109-197 45-119 (120)
65 PF12690 BsuPI: Intracellular 90.3 2.2 4.8E-05 33.7 8.2 65 277-343 4-82 (82)
66 TIGR02375 pseudoazurin pseudoa 89.4 1.7 3.6E-05 36.8 7.2 74 265-359 13-87 (116)
67 COG3794 PetE Plastocyanin [Ene 89.3 2.1 4.4E-05 36.8 7.7 70 266-353 53-123 (128)
68 TIGR02657 amicyanin amicyanin. 88.5 1.4 3.1E-05 34.6 6.0 64 266-346 10-73 (83)
69 TIGR03102 halo_cynanin halocya 88.0 3.7 8.1E-05 34.6 8.4 73 264-354 39-112 (115)
70 TIGR02695 azurin azurin. Azuri 85.7 5.4 0.00012 34.0 8.0 86 109-196 15-124 (125)
71 TIGR02695 azurin azurin. Azuri 84.7 9.4 0.0002 32.6 9.0 76 267-346 16-113 (125)
72 TIGR03094 sulfo_cyanin sulfocy 83.5 10 0.00022 34.5 9.1 77 267-346 85-171 (195)
73 COG4454 Uncharacterized copper 82.7 4.4 9.5E-05 35.8 6.5 88 106-198 59-157 (158)
74 PRK10378 inactive ferrous ion 78.8 17 0.00036 37.2 10.1 80 103-200 37-118 (375)
75 TIGR02866 CoxB cytochrome c ox 77.1 9 0.0002 35.5 7.2 61 267-347 117-177 (201)
76 TIGR02866 CoxB cytochrome c ox 76.5 8.4 0.00018 35.7 6.8 75 110-200 117-193 (201)
77 COG1622 CyoA Heme/copper-type 71.9 15 0.00033 35.3 7.4 77 110-201 137-214 (247)
78 COG1622 CyoA Heme/copper-type 70.6 26 0.00057 33.7 8.7 61 267-347 137-197 (247)
79 COG4263 NosZ Nitrous oxide red 64.5 10 0.00023 39.2 4.8 77 111-198 559-636 (637)
80 PRK05461 apaG CO2+/MG2+ efflux 61.5 21 0.00045 30.7 5.5 51 276-330 32-86 (127)
81 PF10633 NPCBM_assoc: NPCBM-as 60.2 75 0.0016 24.2 8.3 64 272-344 2-74 (78)
82 PF04151 PPC: Bacterial pre-pe 60.1 59 0.0013 24.2 7.3 65 267-344 5-69 (70)
83 PF11614 FixG_C: IG-like fold 59.1 38 0.00081 28.2 6.7 49 275-332 33-82 (118)
84 PRK10378 inactive ferrous ion 58.5 28 0.00061 35.6 6.7 76 266-361 43-118 (375)
85 PRK13202 ureB urease subunit b 53.5 47 0.001 27.3 5.9 63 268-332 12-84 (104)
86 MTH00047 COX2 cytochrome c oxi 50.9 71 0.0015 29.5 7.5 60 268-347 117-176 (194)
87 PF14874 PapD-like: Flagellar- 49.6 1.3E+02 0.0029 23.9 9.7 60 271-341 16-82 (102)
88 PF04379 DUF525: Protein of un 49.2 39 0.00086 27.1 4.9 51 276-330 15-69 (90)
89 PF12690 BsuPI: Intracellular 48.6 78 0.0017 24.8 6.4 57 111-179 17-80 (82)
90 PF14344 DUF4397: Domain of un 46.2 1.7E+02 0.0037 24.2 11.0 20 313-332 62-81 (122)
91 PF05506 DUF756: Domain of unk 45.5 1.5E+02 0.0032 23.3 9.4 58 275-344 20-77 (89)
92 PF01835 A2M_N: MG2 domain; I 45.3 1.5E+02 0.0033 23.4 8.7 68 271-345 11-85 (99)
93 PF07705 CARDB: CARDB; InterP 44.9 1.5E+02 0.0032 23.1 9.2 67 270-346 14-84 (101)
94 TIGR03079 CH4_NH3mon_ox_B meth 44.3 44 0.00096 33.8 5.3 25 150-174 331-355 (399)
95 TIGR00192 urease_beta urease, 43.4 81 0.0017 25.9 5.8 63 268-332 12-83 (101)
96 TIGR01433 CyoA cytochrome o ub 40.5 73 0.0016 30.2 6.1 61 267-347 139-199 (226)
97 PRK13203 ureB urease subunit b 40.4 93 0.002 25.6 5.7 63 268-332 12-83 (102)
98 PF05938 Self-incomp_S1: Plant 39.5 1.6E+02 0.0035 24.0 7.4 69 121-200 2-71 (110)
99 MTH00140 COX2 cytochrome c oxi 39.1 92 0.002 29.5 6.6 61 267-347 140-200 (228)
100 TIGR02745 ccoG_rdxA_fixG cytoc 38.1 88 0.0019 32.7 6.7 51 275-333 348-398 (434)
101 PF05506 DUF756: Domain of unk 37.8 1.6E+02 0.0035 23.1 6.9 57 108-172 7-66 (89)
102 cd00407 Urease_beta Urease bet 37.5 1.1E+02 0.0025 25.0 5.8 63 268-332 12-83 (101)
103 TIGR01432 QOXA cytochrome aa3 36.7 92 0.002 29.2 6.1 60 268-347 131-190 (217)
104 PF04744 Monooxygenase_B: Mono 36.5 40 0.00087 34.1 3.7 78 119-196 266-377 (381)
105 PRK13198 ureB urease subunit b 35.9 1.1E+02 0.0024 27.0 5.8 63 268-332 40-111 (158)
106 COG1188 Ribosome-associated he 34.4 28 0.00061 28.5 1.9 31 99-129 34-64 (100)
107 TIGR03079 CH4_NH3mon_ox_B meth 33.5 1.1E+02 0.0023 31.1 6.1 68 246-329 88-168 (399)
108 PRK13204 ureB urease subunit b 32.5 1.4E+02 0.003 26.4 5.9 63 268-332 35-106 (159)
109 smart00758 PA14 domain in bact 32.3 2.9E+02 0.0063 23.1 8.2 64 268-337 51-115 (136)
110 PF07691 PA14: PA14 domain; I 31.7 3E+02 0.0065 23.1 8.2 61 268-334 53-120 (145)
111 MTH00047 COX2 cytochrome c oxi 31.4 2.9E+02 0.0062 25.5 8.3 74 111-200 117-192 (194)
112 PF14016 DUF4232: Protein of u 31.3 2E+02 0.0043 24.3 6.9 56 275-334 20-82 (131)
113 cd00918 Der-p2_like Several gr 30.8 2.2E+02 0.0047 24.0 6.9 17 155-171 71-87 (120)
114 MTH00008 COX2 cytochrome c oxi 30.1 1.6E+02 0.0034 28.0 6.5 60 268-347 141-200 (228)
115 PRK13201 ureB urease subunit b 29.2 1.8E+02 0.0039 25.1 5.9 63 268-332 12-83 (136)
116 cd00916 Npc2_like Niemann-Pick 27.6 1.6E+02 0.0035 24.8 5.6 17 155-171 75-91 (123)
117 MTH00129 COX2 cytochrome c oxi 26.7 1.9E+02 0.0041 27.4 6.4 60 268-347 141-200 (230)
118 PRK13205 ureB urease subunit b 26.7 2E+02 0.0043 25.4 5.9 63 268-332 12-83 (162)
119 PTZ00047 cytochrome c oxidase 26.4 3.1E+02 0.0067 24.6 7.2 60 268-347 74-133 (162)
120 MTH00098 COX2 cytochrome c oxi 26.2 2E+02 0.0043 27.3 6.4 60 268-347 141-200 (227)
121 COG3354 FlaG Putative archaeal 25.7 2.5E+02 0.0054 24.6 6.3 53 275-332 70-130 (154)
122 PF05775 AfaD: Enterobacteria 24.1 2.7E+02 0.0059 23.3 6.0 53 289-345 54-108 (111)
123 PF14451 Ub-Mut7C: Mut7-C ubiq 23.9 53 0.0011 25.8 1.7 28 96-123 47-74 (81)
124 PF06399 GFRP: GTP cyclohydrol 23.5 38 0.00081 26.5 0.8 18 8-25 17-34 (83)
125 PF09394 Inhibitor_I42: Chagas 22.6 2.1E+02 0.0046 22.2 5.2 73 269-345 1-73 (92)
126 PF11611 DUF4352: Domain of un 22.3 4.3E+02 0.0093 21.4 9.0 63 277-343 40-112 (123)
127 KOG4387|consensus 22.2 35 0.00076 30.9 0.5 28 114-142 73-100 (191)
128 PF07385 DUF1498: Protein of u 21.6 2.8E+02 0.0062 26.2 6.3 60 269-339 112-171 (225)
129 MTH00051 COX2 cytochrome c oxi 21.6 2.5E+02 0.0055 26.6 6.2 60 268-347 145-204 (234)
130 PF11142 DUF2917: Protein of u 21.1 3.5E+02 0.0076 20.0 5.8 47 269-328 2-48 (63)
131 MTH00154 COX2 cytochrome c oxi 20.9 3.8E+02 0.0083 25.3 7.3 60 268-347 141-200 (227)
132 MTH00185 COX2 cytochrome c oxi 20.8 3.4E+02 0.0073 25.8 6.9 61 267-347 140-200 (230)
133 PRK13211 N-acetylglucosamine-b 20.3 2E+02 0.0042 30.6 5.6 60 216-287 168-231 (478)
No 1
>PLN02835 oxidoreductase
Probab=100.00 E-value=1.6e-69 Score=568.94 Aligned_cols=266 Identities=29% Similarity=0.510 Sum_probs=230.5
Q ss_pred CceEEEEEEEEEeeecCccccccCCCcccccccceeecCCCeEEEEEEECCCCCCCeEEEEcCCEEEEEEEecCCCCCce
Q psy16562 55 PLVCYYSFTLENYATVGPACADCLKGNQKACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVT 134 (445)
Q Consensus 55 p~~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~~~ts 134 (445)
.++++|+|+|++. .+.+||+++.+|+|||++|||+|++++||+|+|+|+|+|+ ++|+
T Consensus 27 ~~~~~y~~~v~~~----------------------~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~-~~tt 83 (539)
T PLN02835 27 DPYKYYTWTVTYG----------------------TISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLD-QPFL 83 (539)
T ss_pred CcEEEEEEEEEEE----------------------EeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCC-CCCc
Confidence 4789999999974 3568999999999999999999999999999999999998 8999
Q ss_pred EeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEec-CCCcceEEecccchhhhcCceeEEEEeCCCCCCCCCCcc-cc
Q psy16562 135 LHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPA-MPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELY-DF 212 (445)
Q Consensus 135 iHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~-~~~GT~wYH~H~~~q~~~Gl~G~lIV~~~~~~~p~~~~~-d~ 212 (445)
|||||++|++++||||+++ |||||+||++|+|+|++ +++||||||||++.|+++||+|+|||++++.. +. +| .+
T Consensus 84 iHWHGl~~~~~~~~DGv~~-tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~-~~--p~~~~ 159 (539)
T PLN02835 84 LTWNGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRI-PI--PFPLP 159 (539)
T ss_pred EEeCCcccCCCCCCCCCcc-CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCC-Cc--CCCCC
Confidence 9999999999999999999 99999999999999997 48999999999999999999999999865322 21 12 12
Q ss_pred CCcceEEEEeeeeccCCCCccCCCC-CCCCCCCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeE
Q psy16562 213 DLYSHVIIVTDWMHSMTDSKFPGNT-YNDTRIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPL 291 (445)
Q Consensus 213 d~~e~~l~l~D~~~~~~~~~~~~~~-~~~~~~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~ 291 (445)
| .|++|+|+||++..... +...+ .......++++||||+.. +.++|++|++|||||||++.. ..+
T Consensus 160 d-~e~~l~l~Dw~~~~~~~-~~~~~~~g~~~~~~d~~liNG~~~-----------~~~~v~~G~~yRlRliNa~~~-~~~ 225 (539)
T PLN02835 160 D-GDFTLLVGDWYKTSHKT-LQQRLDSGKVLPFPDGVLINGQTQ-----------STFSGDQGKTYMFRISNVGLS-TSL 225 (539)
T ss_pred C-ceEEEEeeccccCCHHH-HHHHhhcCCCCCCCceEEEccccC-----------ceEEECCCCEEEEEEEEcCCC-ccE
Confidence 3 37999999999986533 21111 122235789999999965 379999999999999999987 489
Q ss_pred EEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEec--CCCceeeEEEEEcCC
Q psy16562 292 IFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTL--CDSITAEAVLQYEGE 361 (445)
Q Consensus 292 ~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~--~~~~~~~ail~y~~~ 361 (445)
.|+|+||.|+||++||++++|..++.+.|++||||||+|++++.+|+|||++... +....+.|+|+|.+.
T Consensus 226 ~f~i~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~~~~~~~ail~Y~~~ 297 (539)
T PLN02835 226 NFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTRQILTATAVLHYSNS 297 (539)
T ss_pred EEEECCCEEEEEEECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccCCCcceEEEEEECCC
Confidence 9999999999999999999999999999999999999999999889999998654 455678999999875
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=1.5e-68 Score=559.32 Aligned_cols=268 Identities=22% Similarity=0.442 Sum_probs=232.4
Q ss_pred CceEEEEEEEEEeeecCccccccCCCcccccccceeecCCCeEEEEEEECCCCCCCeEEEEcCCEEEEEEEecCCCCCce
Q psy16562 55 PLVCYYSFTLENYATVGPACADCLKGNQKACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVT 134 (445)
Q Consensus 55 p~~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~~~ts 134 (445)
.++++|+|+|++. .+++||++|.+++|||++|||+|++++||+|+|+|+|+|+ ++|+
T Consensus 26 ~~~~~~~~~vt~~----------------------~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~-~~tt 82 (543)
T PLN02991 26 DPYRFFEWHVTYG----------------------NISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLD-EPFL 82 (543)
T ss_pred CceEEEEEEEEEE----------------------EeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCC-CCcc
Confidence 4688999999975 3678999999999999999999999999999999999998 8999
Q ss_pred EeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecC-CCcceEEecccchhhhcCceeEEEEeCCCCCCCCCCcc-cc
Q psy16562 135 LHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAM-PSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELY-DF 212 (445)
Q Consensus 135 iHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~-~~GT~wYH~H~~~q~~~Gl~G~lIV~~~~~~~p~~~~~-d~ 212 (445)
|||||++|.+++||||+++ |||||+||++|+|+|++. ++||||||||.+.|+.+||+|+|||++++.. +. ++ .+
T Consensus 83 iHWHGi~q~~~~~~DGv~~-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~-~~--p~~~~ 158 (543)
T PLN02991 83 ISWSGIRNWRNSYQDGVYG-TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLI-PV--PFPAP 158 (543)
T ss_pred EEECCcccCCCccccCCCC-CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCccc-Cc--ccccc
Confidence 9999999999999999998 999999999999999995 8999999999999999999999999987432 21 12 22
Q ss_pred CCcceEEEEeeeeccCCCCccCCCCC-CCCCCCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeE
Q psy16562 213 DLYSHVIIVTDWMHSMTDSKFPGNTY-NDTRIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPL 291 (445)
Q Consensus 213 d~~e~~l~l~D~~~~~~~~~~~~~~~-~~~~~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~ 291 (445)
| .|++|+|+||++..... +...+. ......++++||||++.+ +.++|++|++|||||||++... .+
T Consensus 159 d-~d~~i~l~DW~~~~~~~-~~~~~~~~~~~~~~d~~liNG~~~~----------~~~~v~~G~~yRlRiINa~~~~-~~ 225 (543)
T PLN02991 159 A-DDYTVLIGDWYKTNHKD-LRAQLDNGGKLPLPDGILINGRGSG----------ATLNIEPGKTYRLRISNVGLQN-SL 225 (543)
T ss_pred c-ceeEEEecceecCCHHH-HHHHhhcCCCCCCCCEEEEccCCCC----------ceEEECCCCEEEEEEEeccCCe-eE
Confidence 2 37999999999986433 221111 112347899999999653 4799999999999999999874 79
Q ss_pred EEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEec--CCCceeeEEEEEcCCC
Q psy16562 292 IFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTL--CDSITAEAVLQYEGEK 362 (445)
Q Consensus 292 ~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~--~~~~~~~ail~y~~~~ 362 (445)
.|+|++|.|+||++||.+++|..++++.|++||||||+|++++++|+|||++... .....+.|||+|++..
T Consensus 226 ~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~ 298 (543)
T PLN02991 226 NFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQPAKDYYIVVSSRFTSKILITTGVLHYSNSA 298 (543)
T ss_pred EEEECCCEEEEEEeCCccccceeeeEEEEcCCcEEEEEEECCCCCCcEEEEEeeccCCCCcceEEEEEeCCCC
Confidence 9999999999999999999999999999999999999999999999999999864 3445678999998763
No 3
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=2.4e-68 Score=558.69 Aligned_cols=270 Identities=24% Similarity=0.434 Sum_probs=231.7
Q ss_pred CceEEEEEEEEEeeecCccccccCCCcccccccceeecCCCeEEEEEEECCCCCCCeEEEEcCCEEEEEEEecCCCCCce
Q psy16562 55 PLVCYYSFTLENYATVGPACADCLKGNQKACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVT 134 (445)
Q Consensus 55 p~~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~~~ts 134 (445)
.++++|+|+|++. .+++||+++.+++|||++|||+|++++||+|+|+|+|+|+ ++|+
T Consensus 24 a~~~~~~~~vt~~----------------------~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~-~~tt 80 (545)
T PLN02168 24 APIVSYQWVVSYS----------------------QRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLT-EPFL 80 (545)
T ss_pred ccEEEEEEEEEEE----------------------EecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCC-CCcc
Confidence 4789999999974 3678999999999999999999999999999999999998 8999
Q ss_pred EeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecC-CCcceEEecccchhhhcCceeEEEEeCCCCCCCCCCccccC
Q psy16562 135 LHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAM-PSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFD 213 (445)
Q Consensus 135 iHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~-~~GT~wYH~H~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d~d 213 (445)
|||||++|.+++||||+|+ |||||+||++|+|+|++. ++||||||||.+.|+.+||+|+|||++++........++.
T Consensus 81 iHWHGl~~~~~~~~DGv~g-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~- 158 (545)
T PLN02168 81 MTWNGLQLRKNSWQDGVRG-TNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDE- 158 (545)
T ss_pred EeeCCccCCCCCCcCCCCC-CcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccc-
Confidence 9999999999999999999 999999999999999995 8999999999999999999999999987542211112333
Q ss_pred CcceEEEEeeeeccCCCCccCCCCC-CCCCCCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEE
Q psy16562 214 LYSHVIIVTDWMHSMTDSKFPGNTY-NDTRIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLI 292 (445)
Q Consensus 214 ~~e~~l~l~D~~~~~~~~~~~~~~~-~~~~~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~ 292 (445)
|++|+|+||++.+... +..... ......++++||||++.. .++++|++|++|||||||++... .+.
T Consensus 159 --e~~l~l~Dw~~~~~~~-~~~~~~~g~~~~~~d~~liNG~~~~---------~~~~~v~~G~~yRlRiiNa~~~~-~~~ 225 (545)
T PLN02168 159 --EYDILIGDWFYADHTV-MRASLDNGHSLPNPDGILFNGRGPE---------ETFFAFEPGKTYRLRISNVGLKT-CLN 225 (545)
T ss_pred --eeeEEEEecCCCCHHH-HHhhhhcCCCCCCCCEEEEeccCCC---------cceEEeCCCCEEEEEEEeccCCc-eEE
Confidence 6899999999875432 111111 112346899999999643 25899999999999999999874 799
Q ss_pred EEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCC-c---eEEEEEEec--CCCceeeEEEEEcCCC
Q psy16562 293 FTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSN-N---LYWMQAKTL--CDSITAEAVLQYEGEK 362 (445)
Q Consensus 293 ~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~-G---~y~~~~~~~--~~~~~~~ail~y~~~~ 362 (445)
|+|++|.|+||++||.+++|..++++.|++||||||+|++++++ | +|||++... +....+.|||+|.++.
T Consensus 226 ~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~ 301 (545)
T PLN02168 226 FRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSP 301 (545)
T ss_pred EEECCcEEEEEEECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCCCcceEEEEEECCCC
Confidence 99999999999999999999999999999999999999998654 4 899999875 5667788999998753
No 4
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=2.2e-68 Score=560.97 Aligned_cols=275 Identities=26% Similarity=0.497 Sum_probs=233.8
Q ss_pred CceEEEEEEEEEeeecCccccccCCCcccccccceeecCCCeEEEEEEECCCCCCCeEEEEcCCEEEEEEEecCCCCCce
Q psy16562 55 PLVCYYSFTLENYATVGPACADCLKGNQKACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVT 134 (445)
Q Consensus 55 p~~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~~~ts 134 (445)
.++.+|+|+|++. ...+||++|.+++|||++|||+|+|++||+|+|+|+|+|+ ++|+
T Consensus 25 ~~~~~y~~~v~~~----------------------~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~-~~tt 81 (552)
T PLN02354 25 DPYFFFTWNVTYG----------------------TASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLD-EPFL 81 (552)
T ss_pred ccEEEEEEEEEEE----------------------EecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCC-CCcc
Confidence 4688999999974 3568999999999999999999999999999999999998 8999
Q ss_pred EeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecC-CCcceEEecccchhhhcCceeEEEEeCCCCCCCCCCccccC
Q psy16562 135 LHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAM-PSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFD 213 (445)
Q Consensus 135 iHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~-~~GT~wYH~H~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d~d 213 (445)
|||||++|++++||||+|+ |||||+||++|+|+|++. ++||||||||++.|+.+||+|+|||+++... + .+|+..
T Consensus 82 iHWHGi~q~~~~~~DGv~~-TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~-~--~p~~~~ 157 (552)
T PLN02354 82 LTWSGIQQRKNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLI-P--VPYADP 157 (552)
T ss_pred cccccccCCCCcccCCCcC-CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCC-C--CCCCCc
Confidence 9999999999999999999 999999999999999985 8999999999999999999999999987422 1 124321
Q ss_pred CcceEEEEeeeeccCCCCccCCCCC-CCCCCCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEE
Q psy16562 214 LYSHVIIVTDWMHSMTDSKFPGNTY-NDTRIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLI 292 (445)
Q Consensus 214 ~~e~~l~l~D~~~~~~~~~~~~~~~-~~~~~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~ 292 (445)
..|++|+|+||+++.... +..... ......++++||||++.... ....+.|+|++|++|||||||++... .+.
T Consensus 158 d~e~~l~l~Dw~~~~~~~-~~~~~~~g~~~~~~d~~liNG~~~~~~----~~~~~~~~v~~Gk~yRlRiINa~~~~-~~~ 231 (552)
T PLN02354 158 EDDYTVLIGDWYTKSHTA-LKKFLDSGRTLGRPDGVLINGKSGKGD----GKDEPLFTMKPGKTYRYRICNVGLKS-SLN 231 (552)
T ss_pred CceEEEEeeeeccCCHHH-HHHHHhcCCCCCCCCeEEEeCCcCCCC----CCCceEEEECCCCEEEEEEEecCCCc-eEE
Confidence 237999999999986433 111111 11123579999999964321 01246899999999999999999884 899
Q ss_pred EEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEec--CCCceeeEEEEEcCCC
Q psy16562 293 FTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTL--CDSITAEAVLQYEGEK 362 (445)
Q Consensus 293 ~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~--~~~~~~~ail~y~~~~ 362 (445)
|+|+||.|+||++||++++|..++.+.|++||||||+|++++++|+|||++... +....+.|||+|.++.
T Consensus 232 f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~ 303 (552)
T PLN02354 232 FRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGK 303 (552)
T ss_pred EEECCceEEEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccCCCccEEEEEEECCCC
Confidence 999999999999999999999999999999999999999999889999999864 5566788999998763
No 5
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=6.8e-68 Score=557.56 Aligned_cols=279 Identities=25% Similarity=0.477 Sum_probs=232.9
Q ss_pred CceEEEEEEEEEeeecCccccccCCCcccccccceeecCCC--eEEEEEEECCCCCCCeEEEEcCCEEEEEEEecCCCCC
Q psy16562 55 PLVCYYSFTLENYATVGPACADCLKGNQKACRRKGCVTADG--FERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDRE 132 (445)
Q Consensus 55 p~~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG--~~~~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~~~ 132 (445)
..+++|+|+|++. .+++|| ..+.+++|||++|||+|++++||+|+|+|+|+|+ ++
T Consensus 25 ~~~~~y~~~v~~~----------------------~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~-~~ 81 (596)
T PLN00044 25 DPYAYYDWEVSYV----------------------SAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALD-EP 81 (596)
T ss_pred CceEEEEEEEEEE----------------------EEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCC-CC
Confidence 4578999999974 356888 5679999999999999999999999999999998 89
Q ss_pred ceEeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecC-CCcceEEecccchhhhcCceeEEEEeCCCCCCCCCCccc
Q psy16562 133 VTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAM-PSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYD 211 (445)
Q Consensus 133 tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~-~~GT~wYH~H~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d 211 (445)
|+|||||++|+.++||||+++ |||||+||++|+|+|+++ ++||||||||++.|+++||+|+|||++++.. + .+|+
T Consensus 82 ttIHWHGl~q~~t~w~DGv~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~-~--~P~~ 157 (596)
T PLN00044 82 LLLTWHGVQQRKSAWQDGVGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVI-P--IPFG 157 (596)
T ss_pred ccEEECCccCCCCccccCCCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccc-c--cccc
Confidence 999999999999999999998 999999999999999995 8999999999999999999999999987432 1 1222
Q ss_pred c-CCcceEEEEeeeeccCCCCccCCCCC-CCCCCCCCeEEEccccCCCCCCC---CCcccceEEEecCcEEEEEEEccCC
Q psy16562 212 F-DLYSHVIIVTDWMHSMTDSKFPGNTY-NDTRIKPDAILINGQNQNPKDNS---PRVPMHFFKVQRDKRYLMRIIGGSC 286 (445)
Q Consensus 212 ~-d~~e~~l~l~D~~~~~~~~~~~~~~~-~~~~~~~~~~lING~~~~~~~~~---~~~p~~~i~v~~G~~~rlRliN~~~ 286 (445)
. |..|.+|+|+||++.+... +..... ......+++++|||++....+.. .....+.|+|++|++|||||||++.
T Consensus 158 ~~~~~e~~i~l~DW~~~~~~~-~~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~ 236 (596)
T PLN00044 158 FPDGGDITLFIADWYARDHRA-LRRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGV 236 (596)
T ss_pred CCcccceEEEecccccCCHHH-HHHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccC
Confidence 2 2237999999999976443 111111 11124579999999976521111 1234568999999999999999998
Q ss_pred CceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCc-eEEEEEEec---C---CCceeeEEEEEc
Q psy16562 287 LACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNN-LYWMQAKTL---C---DSITAEAVLQYE 359 (445)
Q Consensus 287 ~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G-~y~~~~~~~---~---~~~~~~ail~y~ 359 (445)
. +.+.|+|++|.|+||++||.+++|..++.+.|++||||||+|+++|+++ +|||++... | +...+.|||+|.
T Consensus 237 ~-~~~~fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~ 315 (596)
T PLN00044 237 A-TSLNFRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYS 315 (596)
T ss_pred C-ceEEEEECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEEEEC
Confidence 7 5899999999999999999999999999999999999999999999765 899998653 2 456788999998
Q ss_pred CCC
Q psy16562 360 GEK 362 (445)
Q Consensus 360 ~~~ 362 (445)
+..
T Consensus 316 ~~~ 318 (596)
T PLN00044 316 NSQ 318 (596)
T ss_pred CCC
Confidence 754
No 6
>PLN02792 oxidoreductase
Probab=100.00 E-value=1.4e-67 Score=552.67 Aligned_cols=270 Identities=25% Similarity=0.433 Sum_probs=231.2
Q ss_pred ceEEEEEEEEEeeecCccccccCCCcccccccceeecCCCeEEEEEEECCCCCCCeEEEEcCCEEEEEEEecCCCCCceE
Q psy16562 56 LVCYYSFTLENYATVGPACADCLKGNQKACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTL 135 (445)
Q Consensus 56 ~~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~~~tsi 135 (445)
++.+|+|+|++. .+.+||++|.+++|||++|||+|++++||+|+|+|+|+|+ ++++|
T Consensus 15 ~~~~~~~~vt~~----------------------~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~-~~tti 71 (536)
T PLN02792 15 DTLFYNWRVTYG----------------------NISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLD-EPFLL 71 (536)
T ss_pred CeEEEEEEEEEE----------------------EeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCC-CCcCE
Confidence 346899999975 3568999999999999999999999999999999999998 99999
Q ss_pred eeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecC-CCcceEEecccchhhhcCceeEEEEeCCCCCCCCCCccccCC
Q psy16562 136 HWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAM-PSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDL 214 (445)
Q Consensus 136 HwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~-~~GT~wYH~H~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d~d~ 214 (445)
||||++|++++||||+++ |||||+||++|+|+|+++ ++||||||||.+.|+.+||+|+|||++++.. +. +++...
T Consensus 72 HWHGl~q~~~~~~DGv~~-tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~-~~--p~~~~d 147 (536)
T PLN02792 72 SWNGVHMRKNSYQDGVYG-TTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRI-PV--PFPEPA 147 (536)
T ss_pred eCCCcccCCCCccCCCCC-CcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCccc-Cc--CCCccc
Confidence 999999999999999988 999999999999999995 8999999999999999999999999875332 21 222112
Q ss_pred cceEEEEeeeeccCCCCccCCCCCC--CCCCCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEE
Q psy16562 215 YSHVIIVTDWMHSMTDSKFPGNTYN--DTRIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLI 292 (445)
Q Consensus 215 ~e~~l~l~D~~~~~~~~~~~~~~~~--~~~~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~ 292 (445)
.|++|+|+||++..... +...... ..+..++++||||++... .+.|+|++|++|||||||++.. +.+.
T Consensus 148 ~e~~i~l~Dw~~~~~~~-~~~~~~~g~~~~~~~d~~liNG~~~~~--------~~~~~v~~Gk~yRlRliNa~~~-~~~~ 217 (536)
T PLN02792 148 GDFTFLIGDWYRRNHTT-LKKILDGGRKLPLMPDGVMINGQGVSY--------VYSITVDKGKTYRFRISNVGLQ-TSLN 217 (536)
T ss_pred ceeEEEecccccCCHHH-HHHHhhccCcCCCCCCEEEEeccCCCC--------cceEEECCCCEEEEEEEEcCCC-ceEE
Confidence 37899999999986543 1111111 112378999999997642 2589999999999999999987 4899
Q ss_pred EEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEec--CCCceeeEEEEEcCCC
Q psy16562 293 FTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTL--CDSITAEAVLQYEGEK 362 (445)
Q Consensus 293 ~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~--~~~~~~~ail~y~~~~ 362 (445)
|+|+||.|+||++||++++|..++.+.|+|||||||+|++++++|+|||++... +....+.|||+|.++.
T Consensus 218 f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~ 289 (536)
T PLN02792 218 FEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSK 289 (536)
T ss_pred EEECCcEEEEEEeCCccCCCcceeEEEEccCceEEEEEEcCCCCceEEEEEEeccCCCCCceEEEEEECCCC
Confidence 999999999999999999999999999999999999999999889999999875 5567788999998753
No 7
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=4.8e-67 Score=553.67 Aligned_cols=278 Identities=29% Similarity=0.521 Sum_probs=231.4
Q ss_pred ceEEEEEEEEEeeecCccccccCCCcccccccceeecCCCeEEEEEEECCCCCCCeEEEEcCCEEEEEEEecCCCCCceE
Q psy16562 56 LVCYYSFTLENYATVGPACADCLKGNQKACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTL 135 (445)
Q Consensus 56 ~~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~~~tsi 135 (445)
++++|+|+|++. .+++||++|.+|+|||++|||+|++++||+|+|+|+|+|+ ++|+|
T Consensus 2 ~~r~y~~~it~~----------------------~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~-~~tsi 58 (539)
T TIGR03389 2 EVRHYTFDVQEK----------------------NVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQ-YNVTI 58 (539)
T ss_pred ceEEEEEEEEEE----------------------EeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCC-CCeeE
Confidence 578999999974 3578999999999999999999999999999999999999 89999
Q ss_pred eeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecC-CCcceEEecccchhhhcCceeEEEEeCCCCCCCCCCccccCC
Q psy16562 136 HWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAM-PSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDL 214 (445)
Q Consensus 136 HwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~-~~GT~wYH~H~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d~d~ 214 (445)
||||++|.+++||||+|++|||||+||++|+|+|++. ++||||||||...|+ +||+|+|||+++.+.. . +++...
T Consensus 59 HwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~-~--~~~~~d 134 (539)
T TIGR03389 59 HWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVP-Y--PFPKPD 134 (539)
T ss_pred ecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCC-C--CCCCCC
Confidence 9999999999999999999999999999999999995 999999999998765 5999999999875321 1 121112
Q ss_pred cceEEEEeeeeccCCCCccCCCCC-CCCCCCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEE
Q psy16562 215 YSHVIIVTDWMHSMTDSKFPGNTY-NDTRIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIF 293 (445)
Q Consensus 215 ~e~~l~l~D~~~~~~~~~~~~~~~-~~~~~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~ 293 (445)
.|++|+|+||++......+..... ......++++||||+..+...+. ....+.|+|++|++|||||||++.. +.+.|
T Consensus 135 ~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~-~~~~~~i~v~~G~~~RlRlINa~~~-~~~~~ 212 (539)
T TIGR03389 135 REVPIILGEWWNADVEAVINQANQTGGAPNVSDAYTINGHPGPLYNCS-SKDTFKLTVEPGKTYLLRIINAALN-DELFF 212 (539)
T ss_pred ceEEEEecccccCCHHHHHHHHHhcCCCCCccceEEECCCcCCCCCCC-CCCceEEEECCCCEEEEEEEeccCC-ceEEE
Confidence 378999999999765432211111 11123568999999965321111 1234689999999999999999986 58999
Q ss_pred EecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEec--C----CCceeeEEEEEcCCC
Q psy16562 294 TIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTL--C----DSITAEAVLQYEGEK 362 (445)
Q Consensus 294 ~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~--~----~~~~~~ail~y~~~~ 362 (445)
+|++|.|+||++||.+++|..++++.|++||||||+|++++.+|+|||++... | ....+.|||+|.+..
T Consensus 213 ~idgH~~~VIa~DG~~~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~ 287 (539)
T TIGR03389 213 AIANHTLTVVEVDATYTKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTS 287 (539)
T ss_pred EECCCeEEEEEeCCcccCceEeCeEEecCCCEEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCC
Confidence 99999999999999999999999999999999999999999889999999865 3 235688999998753
No 8
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=3.4e-66 Score=547.02 Aligned_cols=278 Identities=33% Similarity=0.624 Sum_probs=232.7
Q ss_pred eEEEEEEEEEeeecCccccccCCCcccccccceeecCCCeEEEEEEECCCCCCCeEEEEcCCEEEEEEEecCCCCCceEe
Q psy16562 57 VCYYSFTLENYATVGPACADCLKGNQKACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLH 136 (445)
Q Consensus 57 ~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~~~tsiH 136 (445)
+++|+|+|++. .+++||++|.+|+|||++|||+|++++||+|+|+|+|+|..++++||
T Consensus 1 ~~~y~~~vt~~----------------------~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iH 58 (541)
T TIGR03388 1 IRHYKWEVEYE----------------------FWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIH 58 (541)
T ss_pred CEEEEEEEEEE----------------------EecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEE
Confidence 47899999974 46799999999999999999999999999999999999976789999
Q ss_pred eCCcccCCCCCCCCCCcccccCCCCCCceEEEEecCCCcceEEecccchhhhcCceeEEEEeCCCCCCCCCCccccCCcc
Q psy16562 137 WHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDLYS 216 (445)
Q Consensus 137 wHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~~~GT~wYH~H~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d~d~~e 216 (445)
|||++|.+++||||+|++|||+|+||++|+|+|++.++||||||||.+.|+++||+|+|||+++.... .++++| .|
T Consensus 59 wHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~---~p~~~d-~e 134 (541)
T TIGR03388 59 WHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEK---EPFHYD-GE 134 (541)
T ss_pred ecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhccceEEEEEecCCCCC---CCcccc-ce
Confidence 99999999999999999999999999999999999999999999999999999999999999875321 234455 37
Q ss_pred eEEEEeeeeccCCCCccCCCCC-C-CCCCCCCeEEEccccCCCCCCC----------------CCcccceEEEecCcEEE
Q psy16562 217 HVIIVTDWMHSMTDSKFPGNTY-N-DTRIKPDAILINGQNQNPKDNS----------------PRVPMHFFKVQRDKRYL 278 (445)
Q Consensus 217 ~~l~l~D~~~~~~~~~~~~~~~-~-~~~~~~~~~lING~~~~~~~~~----------------~~~p~~~i~v~~G~~~r 278 (445)
++|+|+||+++...+....... . .....++++||||++...+... .......|+|++|++||
T Consensus 135 ~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~R 214 (541)
T TIGR03388 135 FNLLLSDWWHKSIHEQEVGLSSKPMRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYR 214 (541)
T ss_pred EEEEeecccCCCHHHHHhhcccCCCcCCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEE
Confidence 9999999999865332111111 0 1113578999999986532100 01123468999999999
Q ss_pred EEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCC-ceEEEEEEec--C-CCceeeE
Q psy16562 279 MRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSN-NLYWMQAKTL--C-DSITAEA 354 (445)
Q Consensus 279 lRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~-G~y~~~~~~~--~-~~~~~~a 354 (445)
|||||++.. +.+.|+|++|.|+|||+||++++|..++.+.|+|||||||+|++++.+ |+|||++... + ....+.|
T Consensus 215 lRliNa~~~-~~~~~~id~h~~~VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~~~~~~~a 293 (541)
T TIGR03388 215 LRIASTTAL-AALNFAIEGHKLTVVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKPNTPPGLT 293 (541)
T ss_pred EEEEccccc-ceEEEEECCCEEEEEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCCCCccEEE
Confidence 999999977 589999999999999999999999999999999999999999999866 5899998776 2 2345789
Q ss_pred EEEEcCC
Q psy16562 355 VLQYEGE 361 (445)
Q Consensus 355 il~y~~~ 361 (445)
||+|.+.
T Consensus 294 iL~Y~~~ 300 (541)
T TIGR03388 294 VLNYYPN 300 (541)
T ss_pred EEEECCC
Confidence 9999864
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=1.5e-65 Score=542.94 Aligned_cols=281 Identities=31% Similarity=0.564 Sum_probs=232.7
Q ss_pred CceEEEEEEEEEeeecCccccccCCCcccccccceeecCCCeEEEEEEECCCCCCCeEEEEcCCEEEEEEEecCCCCCce
Q psy16562 55 PLVCYYSFTLENYATVGPACADCLKGNQKACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVT 134 (445)
Q Consensus 55 p~~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~~~ts 134 (445)
.++++|+|+|++. .+.+||++|.+++|||++|||+|++++||+|+|+|+|+|+.++|+
T Consensus 21 ~~~~~~~~~vt~~----------------------~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~ts 78 (574)
T PLN02191 21 AAVREYTWEVEYK----------------------YWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLV 78 (574)
T ss_pred cceEEEEEEEEEE----------------------EeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCcc
Confidence 5788999999974 467899999999999999999999999999999999999867899
Q ss_pred EeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecCCCcceEEecccchhhhcCceeEEEEeCCCCCCCCCCccccCC
Q psy16562 135 LHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDL 214 (445)
Q Consensus 135 iHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~~~GT~wYH~H~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d~d~ 214 (445)
|||||++|.+++||||+|++|||||+||++|+|+|+++++||||||||.+.|+.+||+|+|||+++... . .++.+|.
T Consensus 79 iHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~--~-~~~~~d~ 155 (574)
T PLN02191 79 IHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGP--K-ERLRYDG 155 (574)
T ss_pred EECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCCCEEEEEEccCCCC--C-CCCCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999875322 1 1233443
Q ss_pred cceEEEEeeeeccCCCCccCCCC--CCCCCCCCCeEEEccccCCCCCCC-----------------CCcccceEEEecCc
Q psy16562 215 YSHVIIVTDWMHSMTDSKFPGNT--YNDTRIKPDAILINGQNQNPKDNS-----------------PRVPMHFFKVQRDK 275 (445)
Q Consensus 215 ~e~~l~l~D~~~~~~~~~~~~~~--~~~~~~~~~~~lING~~~~~~~~~-----------------~~~p~~~i~v~~G~ 275 (445)
|++|+|+||++........... .......++++||||++...+... ......+|+|++|+
T Consensus 156 -e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~ 234 (574)
T PLN02191 156 -EFNLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNK 234 (574)
T ss_pred -eEEEeeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCC
Confidence 7899999999975332111100 001124578999999986532100 01122369999999
Q ss_pred EEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCC-ceEEEEEEec--C-CCce
Q psy16562 276 RYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSN-NLYWMQAKTL--C-DSIT 351 (445)
Q Consensus 276 ~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~-G~y~~~~~~~--~-~~~~ 351 (445)
+|||||||+++. +.+.|+|++|.|+|||+||++++|..++.+.|++||||||+|++++.+ ++|||++... | ....
T Consensus 235 ~yRlRiINa~~~-~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~~~~~ 313 (574)
T PLN02191 235 TYRIRLASTTAL-ASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKPNTTQ 313 (574)
T ss_pred EEEEEEEecCCc-eeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCCCCCC
Confidence 999999999987 589999999999999999999999999999999999999999999976 5899999765 3 2334
Q ss_pred eeEEEEEcCCC
Q psy16562 352 AEAVLQYEGEK 362 (445)
Q Consensus 352 ~~ail~y~~~~ 362 (445)
..|||+|.+..
T Consensus 314 ~~ail~Y~~~~ 324 (574)
T PLN02191 314 ALTILNYVTAP 324 (574)
T ss_pred ceEEEEECCCC
Confidence 57999997644
No 10
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=3.6e-65 Score=537.91 Aligned_cols=264 Identities=29% Similarity=0.540 Sum_probs=222.5
Q ss_pred eecCCCeEEEEEEECCCCCCCeEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCcccccCCCCCCceEEEE
Q psy16562 90 CVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKF 169 (445)
Q Consensus 90 ~~~~dG~~~~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f 169 (445)
.+++||++|.+|+|||++|||+|++++||+|+|+|+|+|+.++|+|||||++|++++||||+|++|||||+||++|+|+|
T Consensus 19 ~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f 98 (538)
T TIGR03390 19 NIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEI 98 (538)
T ss_pred EeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEEEE
Confidence 46789999999999999999999999999999999999987899999999999999999999999999999999999999
Q ss_pred ecC--CCcceEEecccchhhhcCceeEEEEeCCCCCCCCCCccccCCcceEEEEeeeeccCCCCccCCCCCC--CCCCCC
Q psy16562 170 PAM--PSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYN--DTRIKP 245 (445)
Q Consensus 170 ~~~--~~GT~wYH~H~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d~d~~e~~l~l~D~~~~~~~~~~~~~~~~--~~~~~~ 245 (445)
++. ++||||||||.+.|+. ||+|+|||++++.. ++++|. |++|+|+||++....+........ .....+
T Consensus 99 ~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~~-----~~~~d~-e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~ 171 (538)
T TIGR03390 99 KPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEPP-----PYKYDD-ERILLVSDFFSATDEEIEQGLLSTPFTWSGET 171 (538)
T ss_pred EecCCCCeeeEEecCCchhhh-cceeEEEEccCCcc-----CCCccC-cEEEEEeCCCCCCHHHHHhhhhccCCccCCCC
Confidence 974 8999999999999987 59999999976321 244553 799999999998654422111111 112356
Q ss_pred CeEEEccccCCCCCC-----CCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccc-eEEEccCCCcceeeEecEEE
Q psy16562 246 DAILINGQNQNPKDN-----SPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQ-LQVIASDGTAVEPLVVDSVT 319 (445)
Q Consensus 246 ~~~lING~~~~~~~~-----~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~-~~via~DG~~v~P~~~~~~~ 319 (445)
+++||||++.+.... ......+.++|++|++|||||||++.. +.+.|+|++|. |+|||+||++++|..++.+.
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~-~~~~~~idgH~~~~VIa~DG~~~~P~~v~~l~ 250 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATAL-SLISLGIEDHENLTIIEADGSYTKPAKIDHLQ 250 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCc-eEEEEEECCCCeEEEEEeCCCCCCceEeCeEE
Confidence 899999997543210 112345789999999999999999987 48999999999 99999999999999999999
Q ss_pred ecCCceEEEEEecCCC-------CceEEEEEEec--CCCceeeEEEEEcCC
Q psy16562 320 LFPGDRVDVIIHTNQS-------NNLYWMQAKTL--CDSITAEAVLQYEGE 361 (445)
Q Consensus 320 I~pGeR~dv~v~~~~~-------~G~y~~~~~~~--~~~~~~~ail~y~~~ 361 (445)
|++||||||+|++++. +|+|||++... +....+.|||+|.+.
T Consensus 251 l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~ 301 (538)
T TIGR03390 251 LGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSD 301 (538)
T ss_pred EccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCC
Confidence 9999999999999975 48999999765 455678999999654
No 11
>PLN02604 oxidoreductase
Probab=100.00 E-value=1.5e-64 Score=536.11 Aligned_cols=281 Identities=32% Similarity=0.625 Sum_probs=236.8
Q ss_pred CCceEEEEEEEEEeeecCccccccCCCcccccccceeecCCCeEEEEEEECCCCCCCeEEEEcCCEEEEEEEecCCCCCc
Q psy16562 54 KPLVCYYSFTLENYATVGPACADCLKGNQKACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREV 133 (445)
Q Consensus 54 ~p~~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~~~t 133 (445)
.+++++|+|+|++. .+++||++|.+|+|||++|||+|++++||+|+|+|+|+|..+++
T Consensus 21 ~~~~~~y~~~vt~~----------------------~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~ 78 (566)
T PLN02604 21 EARIRRYKWEVKYE----------------------YKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENV 78 (566)
T ss_pred cCcEEEEEEEEEEE----------------------EECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCC
Confidence 47899999999974 46799999999999999999999999999999999999865799
Q ss_pred eEeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecCCCcceEEecccchhhhcCceeEEEEeCCCCCCCCCCccccC
Q psy16562 134 TLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFD 213 (445)
Q Consensus 134 siHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~~~GT~wYH~H~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d~d 213 (445)
+|||||+++.+++||||++++|||+|+||++|+|+|+++++||||||||.+.|+.+||+|+|||+++.... .++++|
T Consensus 79 ~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~---~p~~~d 155 (566)
T PLN02604 79 AIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKS---EPFSYD 155 (566)
T ss_pred CEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCC---CccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999874321 123444
Q ss_pred CcceEEEEeeeeccCCCCccCCCCC--CCCCCCCCeEEEccccCCCCCC------------C--CCcccceEEEecCcEE
Q psy16562 214 LYSHVIIVTDWMHSMTDSKFPGNTY--NDTRIKPDAILINGQNQNPKDN------------S--PRVPMHFFKVQRDKRY 277 (445)
Q Consensus 214 ~~e~~l~l~D~~~~~~~~~~~~~~~--~~~~~~~~~~lING~~~~~~~~------------~--~~~p~~~i~v~~G~~~ 277 (445)
. |.+|+|+||++....+.+..... ......+++++|||++.+.+.. . .....+.|+|++|++|
T Consensus 156 ~-d~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~ 234 (566)
T PLN02604 156 Y-DRSIILTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTY 234 (566)
T ss_pred c-ceEEEeeccccCCHHHHHHhhccCCCccCCCCCceEEcCCCCCCCccccCccccccccccCCCCCCceEEEecCCCEE
Confidence 3 68999999999765332221111 0112367999999998764210 0 1123458999999999
Q ss_pred EEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCc-eEEEEEEec--C-CCceee
Q psy16562 278 LMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNN-LYWMQAKTL--C-DSITAE 353 (445)
Q Consensus 278 rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G-~y~~~~~~~--~-~~~~~~ 353 (445)
||||||++.. +.+.|+|++|.|+|||+||++++|..++.+.|++||||||+|++++.+| +|||++... | ....+.
T Consensus 235 RlRlINa~~~-~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~~~~~~~ 313 (566)
T PLN02604 235 RLRISSLTAL-SALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNNTTPPGL 313 (566)
T ss_pred EEEEEecccc-ceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCCCCccee
Confidence 9999999987 5899999999999999999999999999999999999999999998765 899998755 3 356789
Q ss_pred EEEEEcCC
Q psy16562 354 AVLQYEGE 361 (445)
Q Consensus 354 ail~y~~~ 361 (445)
|||+|.+.
T Consensus 314 aIL~Y~~~ 321 (566)
T PLN02604 314 AIFNYYPN 321 (566)
T ss_pred EEEEECCC
Confidence 99999864
No 12
>KOG1263|consensus
Probab=100.00 E-value=7.1e-63 Score=514.26 Aligned_cols=273 Identities=30% Similarity=0.569 Sum_probs=236.7
Q ss_pred CCceEEEEEEEEEeeecCccccccCCCcccccccceeecCCCeEEEEEEECCCCCCCeEEEEcCCEEEEEEEecCCCCCc
Q psy16562 54 KPLVCYYSFTLENYATVGPACADCLKGNQKACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREV 133 (445)
Q Consensus 54 ~p~~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~~~t 133 (445)
..++|.|.|++++. ++.++|.++.+++|||+||||+|+|++||+|+|+|.|++. +++
T Consensus 25 ~~~~~~~~~~v~~~----------------------~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~-~~~ 81 (563)
T KOG1263|consen 25 EAPIRFHTWKVTYG----------------------TASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLD-EPF 81 (563)
T ss_pred cCceEEEEeeEEee----------------------eeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCC-Cce
Confidence 47899999999985 4567777999999999999999999999999999999998 999
Q ss_pred eEeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecC-CCcceEEecccchhhhcCceeEEEEeCCCCCCCCCCcccc
Q psy16562 134 TLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAM-PSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDF 212 (445)
Q Consensus 134 siHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~-~~GT~wYH~H~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d~ 212 (445)
+|||||++|..++|+|| +++|||||+||++|+|+|+++ +.||||||+|+++|+++|++|+|||+++.... -+++.
T Consensus 82 sihWhGv~q~kn~w~DG-~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p---~pf~~ 157 (563)
T KOG1263|consen 82 SIHWHGVRQRKNPWQDG-VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLP---VPFPK 157 (563)
T ss_pred EEEeccccccCCccccC-CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCC---CCCCC
Confidence 99999999999999999 999999999999999999998 99999999999999999999999999875432 23333
Q ss_pred CCcceEEEEeeeecc-CCCCccCCCCCCCC--CCCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCce
Q psy16562 213 DLYSHVIIVTDWMHS-MTDSKFPGNTYNDT--RIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLAC 289 (445)
Q Consensus 213 d~~e~~l~l~D~~~~-~~~~~~~~~~~~~~--~~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~ 289 (445)
...|++|+|+||+++ .... +...+...+ ...+|.++|||+..+... . .+.++|++||+|||||+|++...
T Consensus 158 pd~E~~ill~dW~~~~~~~~-l~~~~~~~~~~p~~~D~~~iNg~~g~~~~----~-~~~l~v~pGktY~lRiiN~g~~~- 230 (563)
T KOG1263|consen 158 PDKEFTILLGDWYKNLNHKN-LKNFLDRTGALPNPSDGVLINGRSGFLYN----C-TPTLTVEPGKTYRLRIINAGLNT- 230 (563)
T ss_pred CCceeEEEeEeeccccCHHH-HHHhhccCCCCCCCCCceEECCCCCcccC----c-eeEEEEcCCCEEEEEEEcccccc-
Confidence 345999999999996 3332 222222111 223899999999854211 1 47899999999999999999875
Q ss_pred eEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEec--CC----CceeeEEEEEcC
Q psy16562 290 PLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTL--CD----SITAEAVLQYEG 360 (445)
Q Consensus 290 ~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~--~~----~~~~~ail~y~~ 360 (445)
.+.|+|++|.|+||++||.+++|..++++.|.|||||+|+++++|.+++|||.+... +. ...+.++++|.+
T Consensus 231 ~l~F~I~~H~ltvVe~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~ 307 (563)
T KOG1263|consen 231 SLNFSIANHQLTVVEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSG 307 (563)
T ss_pred ceEEEECCeEEEEEEecceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeC
Confidence 678999999999999999999999999999999999999999999999999999887 44 788999999998
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=2.8e-61 Score=508.68 Aligned_cols=264 Identities=29% Similarity=0.481 Sum_probs=217.5
Q ss_pred eEEEEEEEEEeeecCccccccCCCcccccccceeecCCCeEEEEEEECCCCCCCeEEEEcCCEEEEEEEecCCCCCceEe
Q psy16562 57 VCYYSFTLENYATVGPACADCLKGNQKACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLH 136 (445)
Q Consensus 57 ~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~~~tsiH 136 (445)
-.+|+|+++.. .+..+|+.+.+|+|||++|||+|++++||+|+|+|+|+|+ ++|+||
T Consensus 45 ~~~~~L~v~~~----------------------~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~-~~tsiH 101 (587)
T TIGR01480 45 GTEFDLTIGET----------------------MVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLP-EDTSIH 101 (587)
T ss_pred CceEEEEEEEE----------------------EEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCC-CCceEE
Confidence 36899999864 3456899999999999999999999999999999999999 899999
Q ss_pred eCCcccCCCCCCCCCCcccccCCCCCCceEEEEecCCCcceEEecccchhhhcCceeEEEEeCCCCCCCCCCccccCCcc
Q psy16562 137 WHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDLYS 216 (445)
Q Consensus 137 wHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~~~GT~wYH~H~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d~d~~e 216 (445)
|||+++.. +|||+|++|||+|+||++|+|+|++.++||||||||.+.|+..||+|+|||++++. + ++++|. |
T Consensus 102 wHGl~~~~--~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~-~----p~~~D~-E 173 (587)
T TIGR01480 102 WHGILLPF--QMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLYGPLIIDPAEP-D----PVRADR-E 173 (587)
T ss_pred cCCCcCCc--cccCCCcccccccCCCCeEEEEEECCCCeeEEEecCchhHhhccceEEEEECCCcc-c----cCCCCc-e
Confidence 99999864 79999999999999999999999999999999999999999999999999986532 2 234553 7
Q ss_pred eEEEEeeeeccCCCCccCC--------------------CCCCCC------------------C------CCCCeEEEcc
Q psy16562 217 HVIIVTDWMHSMTDSKFPG--------------------NTYNDT------------------R------IKPDAILING 252 (445)
Q Consensus 217 ~~l~l~D~~~~~~~~~~~~--------------------~~~~~~------------------~------~~~~~~lING 252 (445)
++|+|+||++......+.. .....+ . .....+||||
T Consensus 174 ~vl~L~Dw~~~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG 253 (587)
T TIGR01480 174 HVVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNG 253 (587)
T ss_pred EEEEeeecccCCHHHHHHhhhcccccccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcC
Confidence 9999999997543221100 000000 0 0112478999
Q ss_pred ccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEec
Q psy16562 253 QNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHT 332 (445)
Q Consensus 253 ~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~ 332 (445)
+.... .+++.+++|++|||||||+++. +.+.|+|++|.|+||++||.+++|..++.+.|+|||||||+|++
T Consensus 254 ~~~~~--------~~~~~v~~G~rvRLR~INas~~-~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~ 324 (587)
T TIGR01480 254 TTPAG--------NWTGLFRPGEKVRLRFINGSAM-TYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEP 324 (587)
T ss_pred ccCCC--------CceEEECCCCEEEEEEEecCCC-ceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEec
Confidence 85421 3578999999999999999987 58999999999999999999999999999999999999999998
Q ss_pred CCCCceEEEEEEecCCCceeeEEEEEcCC
Q psy16562 333 NQSNNLYWMQAKTLCDSITAEAVLQYEGE 361 (445)
Q Consensus 333 ~~~~G~y~~~~~~~~~~~~~~ail~y~~~ 361 (445)
++ .|.|++.+.......+..++|.+.+.
T Consensus 325 ~~-~g~~~i~a~~~~~~~~~~~~l~~~~~ 352 (587)
T TIGR01480 325 TG-DDAFTIFAQDSDRTGYARGTLAVRLG 352 (587)
T ss_pred CC-CceEEEEEEecCCCceEEEEEecCCC
Confidence 75 58999998765444566777777643
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=1.6e-60 Score=499.19 Aligned_cols=328 Identities=22% Similarity=0.310 Sum_probs=249.5
Q ss_pred CCeEEEEEEECCCCCCCeEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecC-
Q psy16562 94 DGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAM- 172 (445)
Q Consensus 94 dG~~~~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~- 172 (445)
+|....+|+|||++|||+|++++||+|+|+|+|+|+ ++|+|||||+++.+ .+||+| ||+|+||++|+|+|+++
T Consensus 61 ~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~-~~ttiHwHGl~~~~--~~DG~p---q~~I~PG~s~~Y~f~~~q 134 (523)
T PRK10965 61 GKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLP-EETTLHWHGLEVPG--EVDGGP---QGIIAPGGKRTVTFTVDQ 134 (523)
T ss_pred CCceeEEEEECCCCCCceEEEECCCEEEEEEEECCC-CCccEEcccccCCC--ccCCCC---CCCCCCCCEEEEEeccCC
Confidence 455667999999999999999999999999999999 89999999999976 599987 89999999999999998
Q ss_pred CCcceEEeccc----chhhhcCceeEEEEeCCCCCC-CCCCccccCCcceEEEEeeeeccCCCCccCC-C-CCCCCCCCC
Q psy16562 173 PSGTFFYHSHV----GLQKMDGLEGSMIIRTPKTAD-PHAELYDFDLYSHVIIVTDWMHSMTDSKFPG-N-TYNDTRIKP 245 (445)
Q Consensus 173 ~~GT~wYH~H~----~~q~~~Gl~G~lIV~~~~~~~-p~~~~~d~d~~e~~l~l~D~~~~~~~~~~~~-~-~~~~~~~~~ 245 (445)
++||||||||. +.|+++||+|+|||+++.+.. +....|+.+ |++|+|+||+++..+..... . .....+..+
T Consensus 135 ~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~--d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~g 212 (523)
T PRK10965 135 PAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVD--DIPVILQDKRFSADGQIDYQLDVMTAAVGWFG 212 (523)
T ss_pred CCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCc--eeeEEEEeeeeCCCCceeccccccccccCccC
Confidence 48999999995 799999999999999875432 112234444 79999999999766542211 1 112234678
Q ss_pred CeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEe-cccceEEEccCCCcc-eeeEecEEEecCC
Q psy16562 246 DAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTI-EKHQLQVIASDGTAV-EPLVVDSVTLFPG 323 (445)
Q Consensus 246 ~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i-~gh~~~via~DG~~v-~P~~~~~~~I~pG 323 (445)
+.++|||+.++ .+.++ +++|||||+|++.. +.+.|++ ++|.|+|||+||+++ +|..++.+.|+||
T Consensus 213 d~~lVNG~~~p-----------~~~v~-~~~~RlRliNas~~-r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lapG 279 (523)
T PRK10965 213 DTLLTNGAIYP-----------QHAAP-RGWLRLRLLNGCNA-RSLNLATSDGRPLYVIASDGGLLAEPVKVSELPILMG 279 (523)
T ss_pred CeEEECCcccc-----------eeecC-CCEEEEEEEeccCC-ceEEEEEcCCceEEEEEeCCCcccCccEeCeEEECcc
Confidence 99999999664 56665 67999999999976 5789998 899999999999997 5999999999999
Q ss_pred ceEEEEEecCCCCceEEEEEEec---C----CCceeeEEEEEcCCCC-----CC-----CCCCCCCC-------CC-CC-
Q psy16562 324 DRVDVIIHTNQSNNLYWMQAKTL---C----DSITAEAVLQYEGEKL-----TY-----VSKRPKSD-------SF-PR- 377 (445)
Q Consensus 324 eR~dv~v~~~~~~G~y~~~~~~~---~----~~~~~~ail~y~~~~~-----~~-----~~~~P~~~-------~~-~~- 377 (445)
|||||+|++++ .+.|++..... . .......++++..... .| ..+.|... .+ ..
T Consensus 280 eR~dvlv~~~~-~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~ 358 (523)
T PRK10965 280 ERFEVLVDTSD-GKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDP 358 (523)
T ss_pred ceEEEEEEcCC-CceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeecc
Confidence 99999999987 57888877533 1 0111234444442211 00 01111100 00 00
Q ss_pred --------------------CC---------------------------------CCCCCCCCcc--ceeEeeCCcEEEE
Q psy16562 378 --------------------GK---------------------------------PKDNSPRVPM--HFFKVQRDKRYLM 402 (445)
Q Consensus 378 --------------------~~---------------------------------~~~~~~~~~~--~~~~v~~G~~~~~ 402 (445)
.. -..|+..++. ..++++.|++++|
T Consensus 359 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~~~~~~~~~~G~~e~w 438 (523)
T PRK10965 359 RLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDMNKPMFAAKKGQYERW 438 (523)
T ss_pred ccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECCCCCcceecCCCCEEEE
Confidence 00 0133333332 2367999999999
Q ss_pred EEEcCCC-CccceEEEEeCeeEEEEecCCccCC---CeEEeEEEecC
Q psy16562 403 RIIGGSC-LACPLIFTIEKHQLQVIASDGTAVE---PLVVDSVTLFP 445 (445)
Q Consensus 403 rliN~s~-~~Hp~~~hihgh~f~Vi~~dG~~~~---p~~~Dtv~v~p 445 (445)
+|+|.+. +.||| ||||++|||+++||.++. +.|+|||.|.|
T Consensus 439 ~i~N~~~~~~Hp~--HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~ 483 (523)
T PRK10965 439 VISGVGDMMLHPF--HIHGTQFRILSENGKPPAAHRAGWKDTVRVEG 483 (523)
T ss_pred EEEeCCCCCccCe--EEeCcEEEEEEecCCCCCccccccccEEEECC
Confidence 9999985 68998 999999999999999876 47999999965
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=1.5e-57 Score=472.55 Aligned_cols=325 Identities=18% Similarity=0.264 Sum_probs=244.5
Q ss_pred CCCeEEEEEEECCCCCCCeEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecC
Q psy16562 93 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAM 172 (445)
Q Consensus 93 ~dG~~~~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~ 172 (445)
..|..+.+|+|||++|||+|++++||+|+|+|+|+|+ ++|+|||||++++.. .+||++ ++|+||++|+|+|.+.
T Consensus 60 ~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~-~~ttiHwHGl~~~~~-~~~g~~----~~I~PG~~~~y~f~~~ 133 (471)
T PRK10883 60 TGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLT-EPVSMTVSGLQVPGP-LMGGPA----RMMSPNADWAPVLPIR 133 (471)
T ss_pred cCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCC-CCCceeECCccCCCC-CCCCcc----ccCCCCCeEEEEEecC
Confidence 3467889999999999999999999999999999998 899999999999875 577764 5899999999999887
Q ss_pred -CCcceEEeccc----chhhhcCceeEEEEeCCCCCC-CCCCccccCCcceEEEEeeeeccCCCCccCCCCCCCCCCCCC
Q psy16562 173 -PSGTFFYHSHV----GLQKMDGLEGSMIIRTPKTAD-PHAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPD 246 (445)
Q Consensus 173 -~~GT~wYH~H~----~~q~~~Gl~G~lIV~~~~~~~-p~~~~~d~d~~e~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~ 246 (445)
++||||||||. +.|+++||+|+|||+++.+.. +....|+.+ |++|+|+||+++........ .....+..++
T Consensus 134 ~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~--d~~l~l~D~~~~~~g~~~~~-~~~~~g~~gd 210 (471)
T PRK10883 134 QNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVD--DFPVIIQDKRLDNFGTPEYN-EPGSGGFVGD 210 (471)
T ss_pred CCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCc--ceeEEeeeeeeccCCCcccc-ccccCCccCC
Confidence 59999999995 469999999999999875432 222334444 89999999998765442221 1123456789
Q ss_pred eEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEe-cccceEEEccCCCcc-eeeEecEEEecCCc
Q psy16562 247 AILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTI-EKHQLQVIASDGTAV-EPLVVDSVTLFPGD 324 (445)
Q Consensus 247 ~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i-~gh~~~via~DG~~v-~P~~~~~~~I~pGe 324 (445)
.++|||+.+ |.++|++| +|||||||++.. +.+.|+| ++|.|+||++||+++ +|..++++.|+|||
T Consensus 211 ~~lvNG~~~-----------p~~~v~~~-~~RlRliNas~~-~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGe 277 (471)
T PRK10883 211 TLLVNGVQS-----------PYVEVSRG-WVRLRLLNASNA-RRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGE 277 (471)
T ss_pred eeEECCccC-----------CeEEecCC-EEEEEEEEccCC-ceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCC
Confidence 999999965 37899875 899999999987 5899999 899999999997776 59999999999999
Q ss_pred eEEEEEecCCCCceEEEEEEec-C-----CC-c------eeeEEEEEcCCC--CCCCCCCCCC---------C-----CC
Q psy16562 325 RVDVIIHTNQSNNLYWMQAKTL-C-----DS-I------TAEAVLQYEGEK--LTYVSKRPKS---------D-----SF 375 (445)
Q Consensus 325 R~dv~v~~~~~~G~y~~~~~~~-~-----~~-~------~~~ail~y~~~~--~~~~~~~P~~---------~-----~~ 375 (445)
||||+|++++ .+.+.+++-.. . .. . ....+++..... ......+|.. . .+
T Consensus 278 R~dvlVd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~ 356 (471)
T PRK10883 278 RREILVDMSN-GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPLVTDNLPMRLLPDEIMEGSPIRSREI 356 (471)
T ss_pred eEEEEEECCC-CceEEEECCCccccccccccccCCccccccceeEEEEccccccCCCCcCChhhcCCCCCCCCCcceEEE
Confidence 9999999977 45666655211 0 00 0 112334433221 1001111110 0 00
Q ss_pred -CCC-CCCCCCCCCccc--eeEeeCCcEEEEEEEcCCCCccceEEEEeCeeEEEEecCCccCCC---eEEeEEEec
Q psy16562 376 -PRG-KPKDNSPRVPMH--FFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEP---LVVDSVTLF 444 (445)
Q Consensus 376 -~~~-~~~~~~~~~~~~--~~~v~~G~~~~~rliN~s~~~Hp~~~hihgh~f~Vi~~dG~~~~p---~~~Dtv~v~ 444 (445)
... ....|+..+... .++++.|++|+|+|.|. +.||| |||+|+|||+++||.+..| .|+|||.|.
T Consensus 357 ~l~~~~~~INg~~~~~~~~~~~~~~g~~e~W~~~n~--~~HP~--HlHg~~FqVl~~~G~~~~~~~~gwkDTV~v~ 428 (471)
T PRK10883 357 SLGDDLPGINGALWDMNRIDVTAQQGTWERWTVRAD--MPQAF--HIEGVMFLIRNVNGAMPFPEDRGWKDTVWVD 428 (471)
T ss_pred EecCCcCccCCcccCCCcceeecCCCCEEEEEEECC--CCcCE--eECCccEEEEEecCCCCCccccCcCcEEEcC
Confidence 011 112455544433 36799999999999886 57998 9999999999999997654 799999984
No 16
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=2.3e-47 Score=376.89 Aligned_cols=265 Identities=18% Similarity=0.233 Sum_probs=215.3
Q ss_pred CCCceEEEEEEEEEeeecCccccccCCCcccccccceeecCCCeEEEEEEECCCCCCCeEEEEcCCEEEEEEEecCCC-C
Q psy16562 53 AKPLVCYYSFTLENYATVGPACADCLKGNQKACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMID-R 131 (445)
Q Consensus 53 ~~p~~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~-~ 131 (445)
+.+++++|+|++++.. ...++|..+.+|+|||++|||+|++++||+|+|+|+|++.. .
T Consensus 23 ~~~~~~~~~l~a~~~~---------------------~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~ 81 (311)
T TIGR02376 23 SGPKVVEVTMTIEEKK---------------------MVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTM 81 (311)
T ss_pred CCCcEEEEEEEEEEEE---------------------EEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCC
Confidence 3578999999999753 23358999999999999999999999999999999999852 4
Q ss_pred CceEeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecCCCcceEEecc----cchhhhcCceeEEEEeCCCCCCCCC
Q psy16562 132 EVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH----VGLQKMDGLEGSMIIRTPKTADPHA 207 (445)
Q Consensus 132 ~tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~~~GT~wYH~H----~~~q~~~Gl~G~lIV~~~~~~~p~~ 207 (445)
++++||||.. ++||++.++| |+||++++|+|+++++|||||||| ++.|+..||+|+|||++++.. +
T Consensus 82 ~h~~h~H~~~-----~~dg~~~~~~--I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~-~-- 151 (311)
T TIGR02376 82 PHNVDFHAAT-----GALGGAALTQ--VNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGL-P-- 151 (311)
T ss_pred ceeeeecCCC-----ccCCCCccee--ECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCC-c--
Confidence 7899999862 5899988887 999999999999999999999999 468999999999999976321 1
Q ss_pred CccccCCcceEEEEeeeeccCCCCc---cCCCCCCCCCCCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEcc
Q psy16562 208 ELYDFDLYSHVIIVTDWMHSMTDSK---FPGNTYNDTRIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGG 284 (445)
Q Consensus 208 ~~~d~d~~e~~l~l~D~~~~~~~~~---~~~~~~~~~~~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~ 284 (445)
++|. |++|+++||+++..... +...........++.++|||+.... .+.+++++|+++||||+|+
T Consensus 152 ---~~d~-e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~--------~~~~~v~~G~~~RlRiiNa 219 (311)
T TIGR02376 152 ---EYDK-EYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGAL--------TGDNALTAGVGERVLFVHS 219 (311)
T ss_pred ---Ccce-eEEEeeeeEeccccccccccccchHHHHhcCCCCEEEECCccCCC--------CCCcccccCCcEEEEEEcC
Confidence 3343 79999999998754321 1111111123567899999995421 1357899999999999999
Q ss_pred CCCceeEEEEecccceEEEccCCCcceee--EecEEEecCCceEEEEEecCCCCceEEEEEEec--CCCceeeEEEEEcC
Q psy16562 285 SCLACPLIFTIEKHQLQVIASDGTAVEPL--VVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTL--CDSITAEAVLQYEG 360 (445)
Q Consensus 285 ~~~~~~~~~~i~gh~~~via~DG~~v~P~--~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~--~~~~~~~ail~y~~ 360 (445)
+.. +.+.|++++|.+.+|+.||.++.+. .++++.|+||||+|++|++++ +|.|++++|.. .......++|.|.+
T Consensus 220 ~~~-~~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG~y~~~~~~~~~~~~~g~~~~i~~~g 297 (311)
T TIGR02376 220 QPN-RDSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQ-PGVYAYVDHNLIEAFEKGAAAQVKVEG 297 (311)
T ss_pred CCC-CCCCCeEecCCceEEEECCcccCCCCCCcceEEECCCceEEEEEEeCC-CeEEEEECcHHHHHHhCCCEEEEEECC
Confidence 975 4678999999999999999999854 489999999999999999998 79999999876 22445778999987
Q ss_pred CC
Q psy16562 361 EK 362 (445)
Q Consensus 361 ~~ 362 (445)
..
T Consensus 298 ~~ 299 (311)
T TIGR02376 298 AW 299 (311)
T ss_pred CC
Confidence 54
No 17
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.7e-45 Score=380.42 Aligned_cols=332 Identities=26% Similarity=0.374 Sum_probs=247.3
Q ss_pred ceeecCCCeEEEEEEECCCCCCCeEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCcccccCCCCCCceEE
Q psy16562 88 KGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRY 167 (445)
Q Consensus 88 ~~~~~~dG~~~~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y 167 (445)
.++...++.....|.+||++|||+|++++||++.|+++|+|. ++|++||||+..++ .+||++..+|+++.||++++|
T Consensus 42 ~~~~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~-~~t~vh~HG~~~p~--~~dG~~~~~~~~~~~~~~~~y 118 (451)
T COG2132 42 AQLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLL-VDTSVHWHGLPVPG--EMDGVPPLTQIPPGPGETPTY 118 (451)
T ss_pred cceeeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCC-CCceEEEcCcccCc--cccCCCcccccCCCCCCcEEE
Confidence 345667788889999999999999999999999999999998 45999999988874 899999999999999999999
Q ss_pred EEecCCCcceEEecccchhhhcCceeEEEEeCCCCCCCCCCccccCCcceEEEEeeeeccCCCCccCCCCCCCCCCCCCe
Q psy16562 168 KFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDA 247 (445)
Q Consensus 168 ~f~~~~~GT~wYH~H~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d~d~~e~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~ 247 (445)
.|+.+.+||||||+|.+.|+++||+|++||+++.+.. +++|. +.+++..+|....... +........+...+.
T Consensus 119 ~f~~~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~-----~~~d~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~g~~ 191 (451)
T COG2132 119 TFTQDVPGTYWYHPHTHGQVYDGLAGALIIEDENSEP-----LGVDD-EPVILQDDWLDEDGTD-LYQEGPAMGGFPGDT 191 (451)
T ss_pred eecCCCCcceEeccCCCchhhcccceeEEEeCCCCCC-----CCCCc-eEEEEEeeeecCCCCc-cccCCccccCCCCCe
Confidence 9999988899999999889999999999999874432 36663 4455555566554443 322233446678899
Q ss_pred EEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEE
Q psy16562 248 ILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVD 327 (445)
Q Consensus 248 ~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~d 327 (445)
.+|||+..+ +...++.+||||++|++.. +.+++++.++.|+||++||.+++|..++.+.|+||||||
T Consensus 192 ~~vnG~~~p------------~~~~~~g~~rlRl~n~~~~-~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~ 258 (451)
T COG2132 192 LLVNGAILP------------FKAVPGGVVRLRLLNAGNA-RTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYE 258 (451)
T ss_pred EEECCCccc------------eeecCCCeEEEEEEecCCc-eEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEE
Confidence 999997543 4444566799999999954 367888889999999999999999899999999999999
Q ss_pred EEEecCCCCceEEEEEEecCCCceeeEEE-----------EEcCCCCCCCCC----C-----------CC--CC---CCC
Q psy16562 328 VIIHTNQSNNLYWMQAKTLCDSITAEAVL-----------QYEGEKLTYVSK----R-----------PK--SD---SFP 376 (445)
Q Consensus 328 v~v~~~~~~G~y~~~~~~~~~~~~~~ail-----------~y~~~~~~~~~~----~-----------P~--~~---~~~ 376 (445)
+++++++ .+.+.+.+...+......+.. .+......+... . |. .. .+.
T Consensus 259 v~v~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (451)
T COG2132 259 VLVDMND-GGAVTLTALGEDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLI 337 (451)
T ss_pred EEEEcCC-CCeEEEEeccccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCCcccccccchhh
Confidence 9999987 678888776521000001111 011100000000 0 00 00 000
Q ss_pred ---CCC-CCCCCCCCcc--ceeEeeCCcEEEEEEEcCCCCccceEEEEeCeeEEEEecCCccC--CCeEEeEEEecC
Q psy16562 377 ---RGK-PKDNSPRVPM--HFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAV--EPLVVDSVTLFP 445 (445)
Q Consensus 377 ---~~~-~~~~~~~~~~--~~~~v~~G~~~~~rliN~s~~~Hp~~~hihgh~f~Vi~~dG~~~--~p~~~Dtv~v~p 445 (445)
... -..++..++. ..+.++.|++++|++.|.+.+.||| ||||+.|+|++.|.... .+.|+||+.|.|
T Consensus 338 ~~~~~~~~~~n~~~~~~~~~~~~~~~G~~~~~~i~n~~~~~HP~--HlHg~~F~v~~~~~~~~~~~~~~kDTv~v~~ 412 (451)
T COG2132 338 GGIGGYVWAINGKAFDDNRVTLIAKAGTRERWVLTNDTPMPHPF--HLHGHFFQVLSGDAPAPGAAPGWKDTVLVAP 412 (451)
T ss_pred cccccccccccCccCCCCcCceeecCCCEEEEEEECCCCCccCe--EEcCceEEEEecCCCcccccCccceEEEeCC
Confidence 001 1123333332 3578999999999999999999998 99999999999992222 268999999976
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=1.3e-36 Score=258.31 Aligned_cols=109 Identities=47% Similarity=0.909 Sum_probs=102.0
Q ss_pred ecCCCeEEEEEEECCCCCCCeEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEe
Q psy16562 91 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFP 170 (445)
Q Consensus 91 ~~~dG~~~~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~ 170 (445)
+..+|..+.+|+|||++|||+|+|++||+|+|+|.|+|. ++++|||||+++...+|+||+++++||+|+||++|+|+|+
T Consensus 7 ~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~ 85 (117)
T PF07732_consen 7 VSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLD-EPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFT 85 (117)
T ss_dssp EETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESS-SGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEE
T ss_pred EEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccc-cccccccceeeeeeeeecCCcccccceeEEeecceeeeEe
Confidence 445665699999999999999999999999999999997 8999999999999988999999999999999999999999
Q ss_pred cCC-CcceEEecccchhhhcCceeEEEEeCC
Q psy16562 171 AMP-SGTFFYHSHVGLQKMDGLEGSMIIRTP 200 (445)
Q Consensus 171 ~~~-~GT~wYH~H~~~q~~~Gl~G~lIV~~~ 200 (445)
+.+ +||||||||...|..+||+|+|||+++
T Consensus 86 ~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 86 ANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp ESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 997 999999999987888999999999976
No 19
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.94 E-value=7.2e-26 Score=203.31 Aligned_cols=145 Identities=32% Similarity=0.544 Sum_probs=118.7
Q ss_pred ceEEEEeeeeccCCCCccCCCCCC-----CCCCCCCeEEEccccCCCCCC--CCCcccceEEEecCcEEEEEEEccCCCc
Q psy16562 216 SHVIIVTDWMHSMTDSKFPGNTYN-----DTRIKPDAILINGQNQNPKDN--SPRVPMHFFKVQRDKRYLMRIIGGSCLA 288 (445)
Q Consensus 216 e~~l~l~D~~~~~~~~~~~~~~~~-----~~~~~~~~~lING~~~~~~~~--~~~~p~~~i~v~~G~~~rlRliN~~~~~ 288 (445)
|++|+++||+++.....+...... .....+++++|||++...+.. ......+.+++++|++|||||||+++.
T Consensus 2 e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~- 80 (159)
T PF00394_consen 2 EYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGAS- 80 (159)
T ss_dssp GGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS-
T ss_pred eEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCC-
Confidence 799999999988776543322221 125789999999998764322 223557899999999999999999987
Q ss_pred eeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEec------CCCceeeEEEEEcCC
Q psy16562 289 CPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTL------CDSITAEAVLQYEGE 361 (445)
Q Consensus 289 ~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~------~~~~~~~ail~y~~~ 361 (445)
+.+.|+|++|.|+|||+||.+++|..++++.|+|||||||+|++++++|+|||++... .....+.|+|+|.++
T Consensus 81 ~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~~ 159 (159)
T PF00394_consen 81 TSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDGA 159 (159)
T ss_dssp -BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETTS
T ss_pred eeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECCC
Confidence 4899999999999999999999999999999999999999999998789999999532 256778999999863
No 20
>PLN02354 copper ion binding / oxidoreductase
Probab=99.88 E-value=2.5e-22 Score=212.25 Aligned_cols=183 Identities=17% Similarity=0.199 Sum_probs=137.6
Q ss_pred CCCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEc---cCCCcceeeEecEE
Q psy16562 242 RIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIA---SDGTAVEPLVVDSV 318 (445)
Q Consensus 242 ~~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via---~DG~~v~P~~~~~~ 318 (445)
+.....++|||+ .|+|.|++++||++++++.|.... .++||||++.+.. .||. .. +++
T Consensus 43 G~~r~~~~iNGq----------~PGP~I~~~~GD~v~V~v~N~l~~----~ttiHWHGi~q~~~~~~DGv----~~-TQc 103 (552)
T PLN02354 43 GVPQQVILINGQ----------FPGPNINSTSNNNIVINVFNNLDE----PFLLTWSGIQQRKNSWQDGV----PG-TNC 103 (552)
T ss_pred CeEEEEEEECCC----------CcCCcEEEeCCCEEEEEEEECCCC----CcccccccccCCCCcccCCC----cC-CcC
Confidence 345678999999 889999999999999999999854 4569999999865 5994 23 899
Q ss_pred EecCCceEEEEEecCCCCceEEEEEEec---CCCceeeEEEEEcCCCCCCCCCCCCCC--C------------C----CC
Q psy16562 319 TLFPGDRVDVIIHTNQSNNLYWMQAKTL---CDSITAEAVLQYEGEKLTYVSKRPKSD--S------------F----PR 377 (445)
Q Consensus 319 ~I~pGeR~dv~v~~~~~~G~y~~~~~~~---~~~~~~~ail~y~~~~~~~~~~~P~~~--~------------~----~~ 377 (445)
+|.||++|.|.|++.+++|+||||+|.. ++++.+..||+-......+.. .++.+ . + ..
T Consensus 104 pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~ 182 (552)
T PLN02354 104 PIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYA-DPEDDYTVLIGDWYTKSHTALKKFLDS 182 (552)
T ss_pred CCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCC-CcCceEEEEeeeeccCCHHHHHHHHhc
Confidence 9999999999999864489999999987 577877777653221111100 00000 0 0 00
Q ss_pred C-------CCCCCCCC-----CccceeEeeCCcEEEEEEEcCCCCccceEEEEeCeeEEEEecCCccCCCeEEeEEEecC
Q psy16562 378 G-------KPKDNSPR-----VPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFP 445 (445)
Q Consensus 378 ~-------~~~~~~~~-----~~~~~~~v~~G~~~~~rliN~s~~~Hp~~~hihgh~f~Vi~~dG~~~~p~~~Dtv~v~p 445 (445)
+ ....|+.. .....++|++||+|||||||++... .+.|+|+||+|+||+.||.+++|..+|++.|+|
T Consensus 183 g~~~~~~d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~-~~~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~ 261 (552)
T PLN02354 183 GRTLGRPDGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKS-SLNFRIQGHKMKLVEMEGSHVLQNDYDSLDVHV 261 (552)
T ss_pred CCCCCCCCeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCc-eEEEEECCceEEEEEeCCcccCCcceeEEEEcc
Confidence 0 00112221 1123689999999999999999988 799999999999999999999999999999875
No 21
>PLN02168 copper ion binding / pectinesterase
Probab=99.88 E-value=4.9e-22 Score=209.24 Aligned_cols=183 Identities=17% Similarity=0.219 Sum_probs=138.3
Q ss_pred CCCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEcc---CCCcceeeEecEE
Q psy16562 242 RIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIAS---DGTAVEPLVVDSV 318 (445)
Q Consensus 242 ~~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~---DG~~v~P~~~~~~ 318 (445)
+.....++|||+ .|+|.|++++||++++++.|...+ ..+||||++.+... ||++ . +++
T Consensus 42 G~~~~~~~vNG~----------~PGP~I~~~~GD~v~V~v~N~L~~----~ttiHWHGl~~~~~~~~DGv~----g-tQc 102 (545)
T PLN02168 42 GGNKQVIVINDM----------FPGPLLNATANDVINVNIFNNLTE----PFLMTWNGLQLRKNSWQDGVR----G-TNC 102 (545)
T ss_pred CeEEEEEEECCc----------CCCCcEEEECCCEEEEEEEeCCCC----CccEeeCCccCCCCCCcCCCC----C-CcC
Confidence 445678999999 889999999999999999999965 35689999999755 9943 3 789
Q ss_pred EecCCceEEEEEecCCCCceEEEEEEec---CCCceeeEEEEEcCCCCCCCCCCCCCC--CC----------------CC
Q psy16562 319 TLFPGDRVDVIIHTNQSNNLYWMQAKTL---CDSITAEAVLQYEGEKLTYVSKRPKSD--SF----------------PR 377 (445)
Q Consensus 319 ~I~pGeR~dv~v~~~~~~G~y~~~~~~~---~~~~~~~ail~y~~~~~~~~~~~P~~~--~~----------------~~ 377 (445)
+|.||++|.|.|++++++|+||||+|.. ++++.+..|++-......+.. .++.+ .+ ..
T Consensus 103 pI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~ 181 (545)
T PLN02168 103 PILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFP-KPDEEYDILIGDWFYADHTVMRASLDN 181 (545)
T ss_pred CCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcC-cccceeeEEEEecCCCCHHHHHhhhhc
Confidence 9999999999999964489999999987 578888877754322111100 00000 00 00
Q ss_pred CC-------CCCCCCCCccceeEeeCCcEEEEEEEcCCCCccceEEEEeCeeEEEEecCCccCCCeEEeEEEecC
Q psy16562 378 GK-------PKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFP 445 (445)
Q Consensus 378 ~~-------~~~~~~~~~~~~~~v~~G~~~~~rliN~s~~~Hp~~~hihgh~f~Vi~~dG~~~~p~~~Dtv~v~p 445 (445)
+. ...|+.......+++++|++|||||||++... .+.|+|+||.|+||+.||.+++|..+|+|.|+|
T Consensus 182 g~~~~~~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~-~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~ 255 (545)
T PLN02168 182 GHSLPNPDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKT-CLNFRIQDHDMLLVETEGTYVQKRVYSSLDIHV 255 (545)
T ss_pred CCCCCCCCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCc-eEEEEECCcEEEEEEECCeECCCceeeEEEEcC
Confidence 00 01122211123689999999999999999887 688999999999999999999999999999876
No 22
>PLN02835 oxidoreductase
Probab=99.88 E-value=9e-22 Score=207.62 Aligned_cols=180 Identities=18% Similarity=0.220 Sum_probs=136.6
Q ss_pred CCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEc---cCCCcceeeEecEEE
Q psy16562 243 IKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIA---SDGTAVEPLVVDSVT 319 (445)
Q Consensus 243 ~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via---~DG~~v~P~~~~~~~ 319 (445)
.....++|||+ .|+|+|++++||++++++.|...+ ..+||||++.+.. .||++ . ++++
T Consensus 46 ~~~~~~~~NG~----------~PGP~I~~~~GD~v~v~v~N~L~~----~ttiHWHGl~~~~~~~~DGv~----~-tQ~p 106 (539)
T PLN02835 46 VPQQVILINGQ----------FPGPRLDVVTNDNIILNLINKLDQ----PFLLTWNGIKQRKNSWQDGVL----G-TNCP 106 (539)
T ss_pred eEEEEEEECCc----------CCCCCEEEECCCEEEEEEEeCCCC----CCcEEeCCcccCCCCCCCCCc----c-CcCC
Confidence 45678999999 889999999999999999999865 3459999999974 59952 2 6899
Q ss_pred ecCCceEEEEEecCCCCceEEEEEEec---CCCceeeEEEEEcCCCCCCCCCCCCCC--CCC----------------CC
Q psy16562 320 LFPGDRVDVIIHTNQSNNLYWMQAKTL---CDSITAEAVLQYEGEKLTYVSKRPKSD--SFP----------------RG 378 (445)
Q Consensus 320 I~pGeR~dv~v~~~~~~G~y~~~~~~~---~~~~~~~ail~y~~~~~~~~~~~P~~~--~~~----------------~~ 378 (445)
|.||++|+|.|++.+++|+||||+|.. ++++.+..||+-......+. ..++.+ .++ .+
T Consensus 107 I~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~-~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g 185 (539)
T PLN02835 107 IPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPF-PLPDGDFTLLVGDWYKTSHKTLQQRLDSG 185 (539)
T ss_pred CCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCC-CCCCceEEEEeeccccCCHHHHHHHhhcC
Confidence 999999999999754589999999976 57788887775322211110 001110 000 00
Q ss_pred C-------CCCCCCCCccceeEeeCCcEEEEEEEcCCCCccceEEEEeCeeEEEEecCCccCCCeEEeEEEecC
Q psy16562 379 K-------PKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFP 445 (445)
Q Consensus 379 ~-------~~~~~~~~~~~~~~v~~G~~~~~rliN~s~~~Hp~~~hihgh~f~Vi~~dG~~~~p~~~Dtv~v~p 445 (445)
. ...|+... ..+++++|++|||||||++... .+.|+|+||.|+||+.||.+++|..+|+|.|+|
T Consensus 186 ~~~~~~d~~liNG~~~--~~~~v~~G~~yRlRliNa~~~~-~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i~~ 256 (539)
T PLN02835 186 KVLPFPDGVLINGQTQ--STFSGDQGKTYMFRISNVGLST-SLNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHV 256 (539)
T ss_pred CCCCCCceEEEccccC--ceEEECCCCEEEEEEEEcCCCc-cEEEEECCCEEEEEEECCccCCCceeeEEEECc
Confidence 0 01122211 2588999999999999999887 799999999999999999999999999999875
No 23
>PLN02792 oxidoreductase
Probab=99.88 E-value=6.4e-22 Score=208.20 Aligned_cols=183 Identities=19% Similarity=0.213 Sum_probs=137.2
Q ss_pred CCCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEc---cCCCcceeeEecEE
Q psy16562 242 RIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIA---SDGTAVEPLVVDSV 318 (445)
Q Consensus 242 ~~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via---~DG~~v~P~~~~~~ 318 (445)
+.....++|||+ .|+|+|++++||++++++.|...+ .++||||++.+.. .||++ .+++
T Consensus 32 g~~~~~~~vNGq----------~PGP~I~~~~GD~v~V~v~N~L~~----~ttiHWHGl~q~~~~~~DGv~-----~tqc 92 (536)
T PLN02792 32 TLPRRGILINGQ----------FPGPEIRSLTNDNLVINVHNDLDE----PFLLSWNGVHMRKNSYQDGVY-----GTTC 92 (536)
T ss_pred CeEEEEEEECCC----------CCCCcEEEECCCEEEEEEEeCCCC----CcCEeCCCcccCCCCccCCCC-----CCcC
Confidence 345678999999 889999999999999999999865 4469999999976 69942 2679
Q ss_pred EecCCceEEEEEecCCCCceEEEEEEec---CCCceeeEEEEEcCCCCCCCCCCCCCC--C----------------CCC
Q psy16562 319 TLFPGDRVDVIIHTNQSNNLYWMQAKTL---CDSITAEAVLQYEGEKLTYVSKRPKSD--S----------------FPR 377 (445)
Q Consensus 319 ~I~pGeR~dv~v~~~~~~G~y~~~~~~~---~~~~~~~ail~y~~~~~~~~~~~P~~~--~----------------~~~ 377 (445)
+|.||++|.|.|++++++|+||||+|.. ++++.+..||+-......+.. .++.+ . +..
T Consensus 93 PI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~-~~d~e~~i~l~Dw~~~~~~~~~~~~~~ 171 (536)
T PLN02792 93 PIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFP-EPAGDFTFLIGDWYRRNHTTLKKILDG 171 (536)
T ss_pred ccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCC-cccceeEEEecccccCCHHHHHHHhhc
Confidence 9999999999999964489999999987 467777766654222111100 01100 0 000
Q ss_pred CC--C------CCCCCCC-ccceeEeeCCcEEEEEEEcCCCCccceEEEEeCeeEEEEecCCccCCCeEEeEEEecC
Q psy16562 378 GK--P------KDNSPRV-PMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFP 445 (445)
Q Consensus 378 ~~--~------~~~~~~~-~~~~~~v~~G~~~~~rliN~s~~~Hp~~~hihgh~f~Vi~~dG~~~~p~~~Dtv~v~p 445 (445)
+. . ..|+... ....++|++|++|||||||++... .+.|+|+||.|+||+.||.+++|..+|+|.|+|
T Consensus 172 g~~~~~~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~-~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~ 247 (536)
T PLN02792 172 GRKLPLMPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQT-SLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHV 247 (536)
T ss_pred cCcCCCCCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCc-eEEEEECCcEEEEEEeCCccCCCcceeEEEEcc
Confidence 00 0 0122211 123589999999999999999887 789999999999999999999999999999876
No 24
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=99.88 E-value=1.1e-21 Score=207.61 Aligned_cols=181 Identities=15% Similarity=0.156 Sum_probs=136.0
Q ss_pred CCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEc---cCCCcceeeEecEEEec
Q psy16562 245 PDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIA---SDGTAVEPLVVDSVTLF 321 (445)
Q Consensus 245 ~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via---~DG~~v~P~~~~~~~I~ 321 (445)
...++|||+ +|+|+|++++||++++++.|.... .++||||++.+.. .||+ | .++++|.
T Consensus 48 ~~vi~vNGq----------~PGPtI~~~~GD~v~V~V~N~L~~----~ttIHWHGl~q~~t~w~DGv---~--~TQcPI~ 108 (596)
T PLN00044 48 QEAIGINGQ----------FPGPALNVTTNWNLVVNVRNALDE----PLLLTWHGVQQRKSAWQDGV---G--GTNCAIP 108 (596)
T ss_pred eEEEEEcCc----------CCCCcEEEECCCEEEEEEEeCCCC----CccEEECCccCCCCccccCC---C--CCcCCcC
Confidence 367999999 889999999999999999999864 4569999998864 5994 2 2789999
Q ss_pred CCceEEEEEecCCCCceEEEEEEec---CCCceeeEEEEEcCCCCCCCC-----CC----CCC-----------------
Q psy16562 322 PGDRVDVIIHTNQSNNLYWMQAKTL---CDSITAEAVLQYEGEKLTYVS-----KR----PKS----------------- 372 (445)
Q Consensus 322 pGeR~dv~v~~~~~~G~y~~~~~~~---~~~~~~~ail~y~~~~~~~~~-----~~----P~~----------------- 372 (445)
||++|+|.|++++++|+||||+|.. ++++.+..||+-......+.. .. -+|
T Consensus 109 PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~~~~l~~g~~ 188 (596)
T PLN00044 109 AGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRALRRALDAGDL 188 (596)
T ss_pred CCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHHHHHHhcCCC
Confidence 9999999999965589999999987 577888766654321111100 00 000
Q ss_pred ----C-CCCCCCCC--CCC----CCCccceeEeeCCcEEEEEEEcCCCCccceEEEEeCeeEEEEecCCccCCCeEEeEE
Q psy16562 373 ----D-SFPRGKPK--DNS----PRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSV 441 (445)
Q Consensus 373 ----~-~~~~~~~~--~~~----~~~~~~~~~v~~G~~~~~rliN~s~~~Hp~~~hihgh~f~Vi~~dG~~~~p~~~Dtv 441 (445)
+ .+.++... .+. .......++|++|++|||||||++... .+.|+|+||+|+||+.||.+++|..+|.|
T Consensus 189 ~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~-~~~fsIdgH~mtVIa~DG~~v~P~~vd~i 267 (596)
T PLN00044 189 LGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVAT-SLNFRIQGHNLLLVEAEGSYTSQQNYTNL 267 (596)
T ss_pred CCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCc-eEEEEECCCEEEEEEeCCcccCceeeeeE
Confidence 0 00111100 000 011223689999999999999999887 79999999999999999999999999999
Q ss_pred EecC
Q psy16562 442 TLFP 445 (445)
Q Consensus 442 ~v~p 445 (445)
.|.|
T Consensus 268 ~I~~ 271 (596)
T PLN00044 268 DIHV 271 (596)
T ss_pred EEcC
Confidence 9976
No 25
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.87 E-value=1.6e-21 Score=206.87 Aligned_cols=185 Identities=17% Similarity=0.233 Sum_probs=137.6
Q ss_pred CCCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEc---cCCCcceeeEecEE
Q psy16562 242 RIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIA---SDGTAVEPLVVDSV 318 (445)
Q Consensus 242 ~~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via---~DG~~v~P~~~~~~ 318 (445)
|.....++|||+ .|+|.|++++||++++++.|.... ..+||||++.+.. .||. ..++++
T Consensus 19 G~~~~~~~~NG~----------~PGP~i~~~~GD~v~v~v~N~l~~----~tsiHwHGl~q~~~~~~DGv----~~vTq~ 80 (539)
T TIGR03389 19 CSTKSILTVNGK----------FPGPTLYAREGDTVIVNVTNNVQY----NVTIHWHGVRQLRNGWADGP----AYITQC 80 (539)
T ss_pred CcEeEEEEECCc----------ccCCEEEEEcCCEEEEEEEeCCCC----CeeEecCCCCCCCCCCCCCC----cccccC
Confidence 456678999999 789999999999999999999865 3569999999875 4994 468999
Q ss_pred EecCCceEEEEEecCCCCceEEEEEEec--CCCceeeEEEEEcCCCCCCCC----C----CCCCCC----------CCCC
Q psy16562 319 TLFPGDRVDVIIHTNQSNNLYWMQAKTL--CDSITAEAVLQYEGEKLTYVS----K----RPKSDS----------FPRG 378 (445)
Q Consensus 319 ~I~pGeR~dv~v~~~~~~G~y~~~~~~~--~~~~~~~ail~y~~~~~~~~~----~----~P~~~~----------~~~~ 378 (445)
+|.||+++.|.|++.+++|+||||+|.. ..++.+..||+-......+.. . +-++.. ...+
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 9999999999999965589999999987 355666655553222111100 0 001100 0000
Q ss_pred -------CCCCCCCC--------CccceeEeeCCcEEEEEEEcCCCCccceEEEEeCeeEEEEecCCccCCCeEEeEEEe
Q psy16562 379 -------KPKDNSPR--------VPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTL 443 (445)
Q Consensus 379 -------~~~~~~~~--------~~~~~~~v~~G~~~~~rliN~s~~~Hp~~~hihgh~f~Vi~~dG~~~~p~~~Dtv~v 443 (445)
....|++. .....++|++|++|||||||++... ++.|||+||.|+||++||.+++|..+|+|.|
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~-~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i 239 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALND-ELFFAIANHTLTVVEVDATYTKPFKTKTIVI 239 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCc-eEEEEECCCeEEEEEeCCcccCceEeCeEEe
Confidence 00112221 1123689999999999999998876 7889999999999999999999999999999
Q ss_pred cC
Q psy16562 444 FP 445 (445)
Q Consensus 444 ~p 445 (445)
+|
T Consensus 240 ~~ 241 (539)
T TIGR03389 240 GP 241 (539)
T ss_pred cC
Confidence 76
No 26
>PLN02991 oxidoreductase
Probab=99.87 E-value=9.7e-22 Score=206.70 Aligned_cols=182 Identities=15% Similarity=0.166 Sum_probs=137.0
Q ss_pred CCCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEc---cCCCcceeeEecEE
Q psy16562 242 RIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIA---SDGTAVEPLVVDSV 318 (445)
Q Consensus 242 ~~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via---~DG~~v~P~~~~~~ 318 (445)
+.....++|||+ .|+|.|++++||++++++.|.... ..+||||++.+.. .||++ . +++
T Consensus 44 G~~r~~~~vNG~----------~PGP~I~~~~GD~v~V~V~N~L~~----~ttiHWHGi~q~~~~~~DGv~---~--tQc 104 (543)
T PLN02991 44 GVAQQGILINGK----------FPGPDIISVTNDNLIINVFNHLDE----PFLISWSGIRNWRNSYQDGVY---G--TTC 104 (543)
T ss_pred CEEEEEEEEcCC----------CCCCcEEEECCCEEEEEecCCCCC----CccEEECCcccCCCccccCCC---C--CCC
Confidence 445678999999 889999999999999999999864 4569999999853 59952 2 689
Q ss_pred EecCCceEEEEEecCCCCceEEEEEEec---CCCceeeEEEEEcCCCCCCCCCCCCCC--CCC----------------C
Q psy16562 319 TLFPGDRVDVIIHTNQSNNLYWMQAKTL---CDSITAEAVLQYEGEKLTYVSKRPKSD--SFP----------------R 377 (445)
Q Consensus 319 ~I~pGeR~dv~v~~~~~~G~y~~~~~~~---~~~~~~~ail~y~~~~~~~~~~~P~~~--~~~----------------~ 377 (445)
+|.||++|.|.|++++++|+||||+|.. ++++.+..|++-......+.. .++.+ .++ .
T Consensus 105 pI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~-~~d~d~~i~l~DW~~~~~~~~~~~~~~ 183 (543)
T PLN02991 105 PIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFP-APADDYTVLIGDWYKTNHKDLRAQLDN 183 (543)
T ss_pred ccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccc-cccceeEEEecceecCCHHHHHHHhhc
Confidence 9999999999999964489999999986 467777766653321111110 01100 000 0
Q ss_pred CC-------CCCCCCCCccceeEeeCCcEEEEEEEcCCCCccceEEEEeCeeEEEEecCCccCCCeEEeEEEecC
Q psy16562 378 GK-------PKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFP 445 (445)
Q Consensus 378 ~~-------~~~~~~~~~~~~~~v~~G~~~~~rliN~s~~~Hp~~~hihgh~f~Vi~~dG~~~~p~~~Dtv~v~p 445 (445)
+. ...|++.. ...++|++|++|||||||++... .|.|+|+||.|+||+.||.+++|..+|++.|+|
T Consensus 184 ~~~~~~~d~~liNG~~~-~~~~~v~~G~~yRlRiINa~~~~-~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~ 256 (543)
T PLN02991 184 GGKLPLPDGILINGRGS-GATLNIEPGKTYRLRISNVGLQN-SLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHV 256 (543)
T ss_pred CCCCCCCCEEEEccCCC-CceEEECCCCEEEEEEEeccCCe-eEEEEECCCEEEEEEeCCccccceeeeEEEEcC
Confidence 00 01122211 13689999999999999999987 589999999999999999999999999999876
No 27
>PLN02191 L-ascorbate oxidase
Probab=99.87 E-value=4e-21 Score=204.32 Aligned_cols=184 Identities=15% Similarity=0.276 Sum_probs=137.8
Q ss_pred CCCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEc---cCCCcceeeEecEE
Q psy16562 242 RIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIA---SDGTAVEPLVVDSV 318 (445)
Q Consensus 242 ~~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via---~DG~~v~P~~~~~~ 318 (445)
+.....++|||+ .|+|.|++++|+++++++.|..... ..+||||++.+.. .||+ ..++++
T Consensus 39 G~~~~v~~vNg~----------~pGP~i~~~~Gd~v~v~v~N~l~~~---~tsiHwHGl~~~~~~~~DGv----~gvtq~ 101 (574)
T PLN02191 39 CKEGAVMTVNGQ----------FPGPTIDAVAGDTIVVHLTNKLTTE---GLVIHWHGIRQKGSPWADGA----AGVTQC 101 (574)
T ss_pred CceeeEEEECCc----------CCCCeEEEEcCCEEEEEEEECCCCC---CccEECCCCCCCCCccccCC----CccccC
Confidence 345679999999 7889999999999999999997532 3569999998865 4884 347889
Q ss_pred EecCCceEEEEEecCCCCceEEEEEEec---CCCceeeEEEEEcCCCCCCC---------------C-------------
Q psy16562 319 TLFPGDRVDVIIHTNQSNNLYWMQAKTL---CDSITAEAVLQYEGEKLTYV---------------S------------- 367 (445)
Q Consensus 319 ~I~pGeR~dv~v~~~~~~G~y~~~~~~~---~~~~~~~ail~y~~~~~~~~---------------~------------- 367 (445)
+|.||+++.|.|+++| +|+||||+|.. .+++.+..|++-......+. .
T Consensus 102 pI~PG~s~~Y~f~~~~-~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 180 (574)
T PLN02191 102 AINPGETFTYKFTVEK-PGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERLRYDGEFNLLLSDWWHESIPSQELGLSSKP 180 (574)
T ss_pred CcCCCCeEEEEEECCC-CeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCCCCCeeEEEeeeccccCChHHHHHhhccCC
Confidence 9999999999999987 89999999987 57788887775211111000 0
Q ss_pred ----CCCCCCCCCCCCC-CCCC--------C-----------CCccceeEeeCCcEEEEEEEcCCCCccceEEEEeCeeE
Q psy16562 368 ----KRPKSDSFPRGKP-KDNS--------P-----------RVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQL 423 (445)
Q Consensus 368 ----~~P~~~~~~~~~~-~~~~--------~-----------~~~~~~~~v~~G~~~~~rliN~s~~~Hp~~~hihgh~f 423 (445)
..|+. .+.+++. ..+. . ......++|++|++|||||||++... .|.|+|+||.|
T Consensus 181 ~~~~~~~d~-~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~-~~~~~idgH~~ 258 (574)
T PLN02191 181 MRWIGEAQS-ILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALA-SLNLAVQGHKL 258 (574)
T ss_pred CCcCCCCCc-eEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCce-eEEEEECCCeE
Confidence 00110 1111111 1000 0 00112589999999999999999887 79999999999
Q ss_pred EEEecCCccCCCeEEeEEEecC
Q psy16562 424 QVIASDGTAVEPLVVDSVTLFP 445 (445)
Q Consensus 424 ~Vi~~dG~~~~p~~~Dtv~v~p 445 (445)
+||+.||.+++|..+|+|.|+|
T Consensus 259 tVIa~DG~~v~P~~v~~l~i~~ 280 (574)
T PLN02191 259 VVVEADGNYITPFTTDDIDIYS 280 (574)
T ss_pred EEEEcCCeeccceEeeeEEEcC
Confidence 9999999999999999999876
No 28
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.86 E-value=7.9e-21 Score=201.58 Aligned_cols=185 Identities=23% Similarity=0.346 Sum_probs=136.8
Q ss_pred CCCCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEc---cCCCcceeeEecE
Q psy16562 241 TRIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIA---SDGTAVEPLVVDS 317 (445)
Q Consensus 241 ~~~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via---~DG~~v~P~~~~~ 317 (445)
.|.....++|||+ .|+|.|++++|++++++|.|..... ..+||||++.+.. .||.+ .+++
T Consensus 16 dG~~~~~~~~Ng~----------~pGP~i~~~~Gd~v~v~v~N~l~~~---~t~iHwHGl~~~~~~~~DG~~----~vtq 78 (541)
T TIGR03388 16 DCFEKLVIGINGQ----------FPGPTIRAQAGDTIVVELTNKLHTE---GVVIHWHGIRQIGTPWADGTA----GVTQ 78 (541)
T ss_pred CCeEeeEEEECCc----------CCCCeEEEEcCCEEEEEEEECCCCC---CccEEecCcCCcCCcccCCCC----cccc
Confidence 3456678999999 7789999999999999999997531 3458888888754 48843 3688
Q ss_pred EEecCCceEEEEEecCCCCceEEEEEEec---CCCceeeEEEEEcCCCCCCCC-------------------------C-
Q psy16562 318 VTLFPGDRVDVIIHTNQSNNLYWMQAKTL---CDSITAEAVLQYEGEKLTYVS-------------------------K- 368 (445)
Q Consensus 318 ~~I~pGeR~dv~v~~~~~~G~y~~~~~~~---~~~~~~~ail~y~~~~~~~~~-------------------------~- 368 (445)
+.|.||+++.|.|++++ +|+||||+|.. .+++.+..|++-......+.. .
T Consensus 79 ~~I~PG~s~~y~f~~~~-~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~ 157 (541)
T TIGR03388 79 CAINPGETFIYNFVVDR-PGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPFHYDGEFNLLLSDWWHKSIHEQEVGLSSK 157 (541)
T ss_pred CCcCCCCEEEEEEEcCC-CEEEEEEecchHHhhccceEEEEEecCCCCCCCccccceEEEEeecccCCCHHHHHhhcccC
Confidence 99999999999999987 89999999976 477888777764321110000 0
Q ss_pred ------CCCCCCCCCCCC-CCCC------------------CCCccceeEeeCCcEEEEEEEcCCCCccceEEEEeCeeE
Q psy16562 369 ------RPKSDSFPRGKP-KDNS------------------PRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQL 423 (445)
Q Consensus 369 ------~P~~~~~~~~~~-~~~~------------------~~~~~~~~~v~~G~~~~~rliN~s~~~Hp~~~hihgh~f 423 (445)
.|+. .+.+++. ..+. .......++|++|++|||||||++... .+.|+|++|.|
T Consensus 158 ~~~~~~~~d~-~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~-~~~~~id~h~~ 235 (541)
T TIGR03388 158 PMRWIGEPQS-LLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALA-ALNFAIEGHKL 235 (541)
T ss_pred CCcCCCCCcc-eEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccc-eEEEEECCCEE
Confidence 0000 0111111 1000 001112488999999999999998877 79999999999
Q ss_pred EEEecCCccCCCeEEeEEEecC
Q psy16562 424 QVIASDGTAVEPLVVDSVTLFP 445 (445)
Q Consensus 424 ~Vi~~dG~~~~p~~~Dtv~v~p 445 (445)
+||+.||.+++|..+|.|.|+|
T Consensus 236 ~VIa~DG~~v~P~~v~~l~i~~ 257 (541)
T TIGR03388 236 TVVEADGNYVEPFTVKDIDIYS 257 (541)
T ss_pred EEEEeCCEecccceeCeEEecC
Confidence 9999999999999999999876
No 29
>PLN02604 oxidoreductase
Probab=99.86 E-value=9e-21 Score=201.84 Aligned_cols=184 Identities=24% Similarity=0.330 Sum_probs=135.8
Q ss_pred CCCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEc---cCCCcceeeEecEE
Q psy16562 242 RIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIA---SDGTAVEPLVVDSV 318 (445)
Q Consensus 242 ~~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via---~DG~~v~P~~~~~~ 318 (445)
|.....++|||+ .|+|.|+++.|++++++|.|..... ..+||+|++.+.. .||. ..++++
T Consensus 40 G~~r~~~~~Ng~----------~pgP~i~~~~Gd~v~v~v~N~l~~~---~~~iH~HG~~~~~~~~~DG~----~~~tq~ 102 (566)
T PLN02604 40 CFKKLVITINGR----------SPGPTILAQQGDTVIVELKNSLLTE---NVAIHWHGIRQIGTPWFDGT----EGVTQC 102 (566)
T ss_pred CceeeEEEECCc----------cCCCcEEEECCCEEEEEEEeCCCCC---CCCEEeCCCCCCCCccccCC----CccccC
Confidence 456678999999 6789999999999999999997421 2347888887654 4884 346889
Q ss_pred EecCCceEEEEEecCCCCceEEEEEEec---CCCceeeEEEEEcCCCCCCCC-------------------------C--
Q psy16562 319 TLFPGDRVDVIIHTNQSNNLYWMQAKTL---CDSITAEAVLQYEGEKLTYVS-------------------------K-- 368 (445)
Q Consensus 319 ~I~pGeR~dv~v~~~~~~G~y~~~~~~~---~~~~~~~ail~y~~~~~~~~~-------------------------~-- 368 (445)
.|.||+++.|.|++++ +|+||||+|.. .+++.+..|++-......+.. .
T Consensus 103 ~i~pg~s~~y~f~~~~-~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~d~d~~l~l~Dw~~~~~~~~~~~~~~~~ 181 (566)
T PLN02604 103 PILPGETFTYEFVVDR-PGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPFSYDYDRSIILTDWYHKSTYEQALGLSSIP 181 (566)
T ss_pred ccCCCCeEEEEEEcCC-CEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCccccCcceEEEeeccccCCHHHHHHhhccCC
Confidence 9999999999999986 89999999987 477877777764321110000 0
Q ss_pred -----CCCCCCCCCCCC-CCCC----------------CCCccceeEeeCCcEEEEEEEcCCCCccceEEEEeCeeEEEE
Q psy16562 369 -----RPKSDSFPRGKP-KDNS----------------PRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVI 426 (445)
Q Consensus 369 -----~P~~~~~~~~~~-~~~~----------------~~~~~~~~~v~~G~~~~~rliN~s~~~Hp~~~hihgh~f~Vi 426 (445)
.|+. .+.+++. ..+. .......+++++|++|||||||++... .+.|+|++|.|+||
T Consensus 182 ~~~~~~~d~-~liNG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~-~~~~sidgH~~~VI 259 (566)
T PLN02604 182 FDWVGEPQS-LLIQGKGRYNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALS-ALSFQIEGHNMTVV 259 (566)
T ss_pred CccCCCCCc-eEEcCCCCCCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccc-eEEEEECCCEEEEE
Confidence 0010 0111111 1000 001223588999999999999999887 89999999999999
Q ss_pred ecCCccCCCeEEeEEEecC
Q psy16562 427 ASDGTAVEPLVVDSVTLFP 445 (445)
Q Consensus 427 ~~dG~~~~p~~~Dtv~v~p 445 (445)
+.||.+++|..+|.|.|+|
T Consensus 260 a~DG~~v~P~~v~~l~l~~ 278 (566)
T PLN02604 260 EADGHYVEPFVVKNLFIYS 278 (566)
T ss_pred EeCCEecccceeeeEEEcc
Confidence 9999999999999999875
No 30
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.85 E-value=1.9e-20 Score=198.28 Aligned_cols=186 Identities=19% Similarity=0.270 Sum_probs=134.5
Q ss_pred CCCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEc---cCCCcceeeEecEE
Q psy16562 242 RIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIA---SDGTAVEPLVVDSV 318 (445)
Q Consensus 242 ~~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via---~DG~~v~P~~~~~~ 318 (445)
+.....++|||+ .|+|+|++++|+++++++.|..... ..+||||++.+.. .||++ .++++
T Consensus 24 g~~r~~~~~NG~----------~PGP~I~~~~GD~v~V~v~N~L~~~---~ttiHwHGi~~~~~~~~DGvp----~vTQc 86 (538)
T TIGR03390 24 CSSRYSVVVNGT----------SPGPEIRLQEGQTTWIRVYNDIPDN---NVTMHWHGLTQRTAPFSDGTP----LASQW 86 (538)
T ss_pred CeEEEEEEECCc----------CCCCeEEEeCCCEEEEEEEECCCCC---CceEECCCCCCCCCCCCCCCc----ccccC
Confidence 334578999999 8899999999999999999998532 3569999998754 59954 47899
Q ss_pred EecCCceEEEEEecC-CCCceEEEEEEec--CCCceeeEEEEEcCCCCCCC-CC----CCCC------------------
Q psy16562 319 TLFPGDRVDVIIHTN-QSNNLYWMQAKTL--CDSITAEAVLQYEGEKLTYV-SK----RPKS------------------ 372 (445)
Q Consensus 319 ~I~pGeR~dv~v~~~-~~~G~y~~~~~~~--~~~~~~~ail~y~~~~~~~~-~~----~P~~------------------ 372 (445)
+|.||+.|+|.|+++ +++|+||||+|.. ..++.+..||+-........ .. +-++
T Consensus 87 pI~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~ 166 (538)
T TIGR03390 87 PIPPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPPYKYDDERILLVSDFFSATDEEIEQGLLSTPFT 166 (538)
T ss_pred CCCCCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccCCCccCcEEEEEeCCCCCCHHHHHhhhhccCCc
Confidence 999999999999975 3589999999986 23366665554221110000 00 0000
Q ss_pred -----C-CCCCCCCC-CC------C-CCCccceeEeeCCcEEEEEEEcCCCCccceEEEEeCee-EEEEecCCccCCCeE
Q psy16562 373 -----D-SFPRGKPK-DN------S-PRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQ-LQVIASDGTAVEPLV 437 (445)
Q Consensus 373 -----~-~~~~~~~~-~~------~-~~~~~~~~~v~~G~~~~~rliN~s~~~Hp~~~hihgh~-f~Vi~~dG~~~~p~~ 437 (445)
+ .+.+++.. .. . .......++|++|++|||||||++... .+.|+|++|. |+||++||.+++|..
T Consensus 167 ~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~-~~~~~idgH~~~~VIa~DG~~~~P~~ 245 (538)
T TIGR03390 167 WSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALS-LISLGIEDHENLTIIEADGSYTKPAK 245 (538)
T ss_pred cCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCce-EEEEEECCCCeEEEEEeCCCCCCceE
Confidence 0 01111110 00 0 001124689999999999999999887 7899999999 999999999999999
Q ss_pred EeEEEecC
Q psy16562 438 VDSVTLFP 445 (445)
Q Consensus 438 ~Dtv~v~p 445 (445)
+|+|.|+|
T Consensus 246 v~~l~l~~ 253 (538)
T TIGR03390 246 IDHLQLGG 253 (538)
T ss_pred eCeEEEcc
Confidence 99999876
No 31
>KOG1263|consensus
Probab=99.84 E-value=5.2e-20 Score=193.04 Aligned_cols=181 Identities=20% Similarity=0.334 Sum_probs=136.0
Q ss_pred CCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEcc---CCCcceeeEecEEEe
Q psy16562 244 KPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIAS---DGTAVEPLVVDSVTL 320 (445)
Q Consensus 244 ~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~---DG~~v~P~~~~~~~I 320 (445)
....++|||+ +|+|.|.++.|+++.++++|.... .++||||++.+... ||. .+++|+|
T Consensus 46 ~~~vi~iNG~----------fPGP~I~~~~gD~ivV~v~N~~~~----~~sihWhGv~q~kn~w~DG~-----~~TqCPI 106 (563)
T KOG1263|consen 46 EKQVITINGQ----------FPGPTINAEEGDTIVVNVVNRLDE----PFSIHWHGVRQRKNPWQDGV-----YITQCPI 106 (563)
T ss_pred cceeEeecCC----------CCCCeEEEEeCCEEEEEEEeCCCC----ceEEEeccccccCCccccCC-----ccccCCc
Confidence 5578999999 889999999999999999999753 56799999888753 992 3699999
Q ss_pred cCCceEEEEEecCCCCceEEEEEEec---CCCceeeEEEEEcCCCCCCCCCCCCCC--CC--------------------
Q psy16562 321 FPGDRVDVIIHTNQSNNLYWMQAKTL---CDSITAEAVLQYEGEKLTYVSKRPKSD--SF-------------------- 375 (445)
Q Consensus 321 ~pGeR~dv~v~~~~~~G~y~~~~~~~---~~~~~~~ail~y~~~~~~~~~~~P~~~--~~-------------------- 375 (445)
.|||.|.|.|++++..|+||||+|.. +.+..+..++.-......+. +.|+-+ .+
T Consensus 107 ~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf-~~pd~E~~ill~dW~~~~~~~~l~~~~~~~ 185 (563)
T KOG1263|consen 107 QPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPF-PKPDKEFTILLGDWYKNLNHKNLKNFLDRT 185 (563)
T ss_pred CCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCC-CCCCceeEEEeEeeccccCHHHHHHhhccC
Confidence 99999999999997789999999998 34455554443332211111 112111 00
Q ss_pred ---CC--CCCCCCCCCCc----cceeEeeCCcEEEEEEEcCCCCccceEEEEeCeeEEEEecCCccCCCeEEeEEEecC
Q psy16562 376 ---PR--GKPKDNSPRVP----MHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFP 445 (445)
Q Consensus 376 ---~~--~~~~~~~~~~~----~~~~~v~~G~~~~~rliN~s~~~Hp~~~hihgh~f~Vi~~dG~~~~p~~~Dtv~v~p 445 (445)
+. +....|+.... ...+++++||+|+|||+|++... .+.|.|.+|+|+||++||.+++|...|++.|.|
T Consensus 186 ~~~p~~~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~-~l~F~I~~H~ltvVe~Dg~y~~p~~~~~l~i~~ 263 (563)
T KOG1263|consen 186 GALPNPSDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNT-SLNFSIANHQLTVVEVDGAYTKPFTTDSLDIHP 263 (563)
T ss_pred CCCCCCCCceEECCCCCcccCceeEEEEcCCCEEEEEEEcccccc-ceEEEECCeEEEEEEecceEEeeeeeceEEEcC
Confidence 00 00011222211 14689999999999999999887 466999999999999999999999999999876
No 32
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.82 E-value=5e-20 Score=162.42 Aligned_cols=106 Identities=19% Similarity=0.290 Sum_probs=85.6
Q ss_pred cCCCeEEEEEEECCCCCCCeEEEEcCCEEEEEEEecCC--CCCceEeeCCcccCCCCCCCCCCcccccCCCCC---C-c-
Q psy16562 92 TADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMI--DREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSS---T-T- 164 (445)
Q Consensus 92 ~~dG~~~~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~--~~~tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG---~-~- 164 (445)
.+++....-+.++| ++||+|++++||+|+|+|.|.+. .....||+||...+..+.|||++.++||+|.|+ . .
T Consensus 35 ~~~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~ 113 (148)
T TIGR03095 35 PMPGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFG 113 (148)
T ss_pred cCCCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccc
Confidence 44566666778888 77999999999999999999964 245667777766555556999999999999884 1 1
Q ss_pred -eEEEEecCCCcceEEecccchhhhcCceeEEEEe
Q psy16562 165 -FRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIR 198 (445)
Q Consensus 165 -~~Y~f~~~~~GT~wYH~H~~~q~~~Gl~G~lIV~ 198 (445)
.++.|+++++||||||||...|+.+||+|+|||+
T Consensus 114 ~~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 114 YTDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred eeEEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 2455666699999999999999999999999995
No 33
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.82 E-value=2e-19 Score=190.90 Aligned_cols=182 Identities=19% Similarity=0.237 Sum_probs=132.9
Q ss_pred CCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEc-cCCCcceeeEecEEEecC
Q psy16562 244 KPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIA-SDGTAVEPLVVDSVTLFP 322 (445)
Q Consensus 244 ~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via-~DG~~v~P~~~~~~~I~p 322 (445)
....++|||+ .|+|+|++++|++++++|.|.... ..+||||++.+-. .||++- ++++.|.|
T Consensus 63 ~~~~~~~Ng~----------~PGP~ir~~~Gd~v~v~v~N~l~~----~tsiHwHGl~~~~~~DGvP~----vt~~~I~P 124 (587)
T TIGR01480 63 ARPAITVNGS----------IPGPLLRWREGDTVRLRVTNTLPE----DTSIHWHGILLPFQMDGVPG----VSFAGIAP 124 (587)
T ss_pred EEEEEEECCc----------cCCceEEEECCCEEEEEEEcCCCC----CceEEcCCCcCCccccCCCc----ccccccCC
Confidence 3467999998 778999999999999999999865 3458999988754 599643 56788999
Q ss_pred CceEEEEEecCCCCceEEEEEEec---CCCceeeEEEEEcCCCCCCC-CC----CCCCC---------------------
Q psy16562 323 GDRVDVIIHTNQSNNLYWMQAKTL---CDSITAEAVLQYEGEKLTYV-SK----RPKSD--------------------- 373 (445)
Q Consensus 323 GeR~dv~v~~~~~~G~y~~~~~~~---~~~~~~~ail~y~~~~~~~~-~~----~P~~~--------------------- 373 (445)
|++++|.|++.+ +|+||||+|.. ..++.+..||+-........ .. +-+|.
T Consensus 125 G~s~~Y~f~~~~-~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~~~~~ 203 (587)
T TIGR01480 125 GETFTYRFPVRQ-SGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPVRADREHVVLLSDWTDLDPAALFRKLKVMAGHDNYY 203 (587)
T ss_pred CCeEEEEEECCC-CeeEEEecCchhHhhccceEEEEECCCccccCCCCceEEEEeeecccCCHHHHHHhhhccccccccc
Confidence 999999999987 89999999986 46677776664321111000 00 00000
Q ss_pred -----CCC----C-CC--------CC---------------------CCCCCCc-cceeEeeCCcEEEEEEEcCCCCccc
Q psy16562 374 -----SFP----R-GK--------PK---------------------DNSPRVP-MHFFKVQRDKRYLMRIIGGSCLACP 413 (445)
Q Consensus 374 -----~~~----~-~~--------~~---------------------~~~~~~~-~~~~~v~~G~~~~~rliN~s~~~Hp 413 (445)
.+. . +. .+ .|+.... ...+.+++|+++||||||++... .
T Consensus 204 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~-~ 282 (587)
T TIGR01480 204 KRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMT-Y 282 (587)
T ss_pred ccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccCCCCceEEECCCCEEEEEEEecCCCc-e
Confidence 000 0 00 00 1111110 11378999999999999999888 7
Q ss_pred eEEEEeCeeEEEEecCCccCCCeEEeEEEecC
Q psy16562 414 LIFTIEKHQLQVIASDGTAVEPLVVDSVTLFP 445 (445)
Q Consensus 414 ~~~hihgh~f~Vi~~dG~~~~p~~~Dtv~v~p 445 (445)
|.|+|+||.|+||+.||.+++|..+|++.|+|
T Consensus 283 f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~p 314 (587)
T TIGR01480 283 FDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAP 314 (587)
T ss_pred EEEEECCCEEEEEEcCCcCcCceEeCeEEEcC
Confidence 99999999999999999999999999999976
No 34
>PRK10965 multicopper oxidase; Provisional
Probab=99.77 E-value=3.5e-18 Score=179.87 Aligned_cols=176 Identities=19% Similarity=0.227 Sum_probs=127.1
Q ss_pred CCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEc-cCCCcceeeEecEEEecCC
Q psy16562 245 PDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIA-SDGTAVEPLVVDSVTLFPG 323 (445)
Q Consensus 245 ~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via-~DG~~v~P~~~~~~~I~pG 323 (445)
...+.+||+ .|+|+|++++|+++++++.|..... .+||||++.+-+ .||++ ++.|.||
T Consensus 65 t~~~~yNg~----------~PGPtIr~~~Gd~v~v~~~N~L~~~----ttiHwHGl~~~~~~DG~p-------q~~I~PG 123 (523)
T PRK10965 65 TATWGYNGN----------LLGPAVRLQRGKAVTVDITNQLPEE----TTLHWHGLEVPGEVDGGP-------QGIIAPG 123 (523)
T ss_pred eEEEEECCC----------CCCceEEEECCCEEEEEEEECCCCC----ccEEcccccCCCccCCCC-------CCCCCCC
Confidence 357999998 7889999999999999999998753 458999998864 59953 6779999
Q ss_pred ceEEEEEecCCCCceEEEEEEec-------CCCceeeEEEEEcCCCCCCCCC---CCCCCCCCCC---------------
Q psy16562 324 DRVDVIIHTNQSNNLYWMQAKTL-------CDSITAEAVLQYEGEKLTYVSK---RPKSDSFPRG--------------- 378 (445)
Q Consensus 324 eR~dv~v~~~~~~G~y~~~~~~~-------~~~~~~~ail~y~~~~~~~~~~---~P~~~~~~~~--------------- 378 (445)
++++|.|+++|++|+||||+|.. ..++.+..||+-......+.+. .-+...+++.
T Consensus 124 ~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~~~~ 203 (523)
T PRK10965 124 GKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQLDV 203 (523)
T ss_pred CEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceeccccc
Confidence 99999999998789999999963 3677777666543221100000 0000000000
Q ss_pred ----------CCCCCCCCCccceeEeeCCcEEEEEEEcCCCCccceEEEE-eCeeEEEEecCCccC-CCeEEeEEEecC
Q psy16562 379 ----------KPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTI-EKHQLQVIASDGTAV-EPLVVDSVTLFP 445 (445)
Q Consensus 379 ----------~~~~~~~~~~~~~~~v~~G~~~~~rliN~s~~~Hp~~~hi-hgh~f~Vi~~dG~~~-~p~~~Dtv~v~p 445 (445)
....|+...+ .+.+ ++++|||||+|++... .+.|.+ ++|.|+||+.||.++ +|..+++|.|+|
T Consensus 204 ~~~~~g~~gd~~lVNG~~~p--~~~v-~~~~~RlRliNas~~r-~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lap 278 (523)
T PRK10965 204 MTAAVGWFGDTLLTNGAIYP--QHAA-PRGWLRLRLLNGCNAR-SLNLATSDGRPLYVIASDGGLLAEPVKVSELPILM 278 (523)
T ss_pred cccccCccCCeEEECCcccc--eeec-CCCEEEEEEEeccCCc-eEEEEEcCCceEEEEEeCCCcccCccEeCeEEECc
Confidence 0011222222 3444 5779999999998876 688887 899999999999986 699999999886
No 35
>PRK10883 FtsI repressor; Provisional
Probab=99.74 E-value=4.4e-17 Score=169.96 Aligned_cols=177 Identities=18% Similarity=0.215 Sum_probs=125.2
Q ss_pred CCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEcc-CCCcceeeEecEEEecC
Q psy16562 244 KPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIAS-DGTAVEPLVVDSVTLFP 322 (445)
Q Consensus 244 ~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~-DG~~v~P~~~~~~~I~p 322 (445)
....+.+||+ .|+|+|++++|+++++++.|..... .++|||++.+-+. ||.+. ..|.|
T Consensus 64 ~~~v~~~ng~----------~pGPtir~~~Gd~v~v~v~N~L~~~----ttiHwHGl~~~~~~~~g~~-------~~I~P 122 (471)
T PRK10883 64 KASVWGINGR----------YLGPTIRVWKGDDVKLIYSNRLTEP----VSMTVSGLQVPGPLMGGPA-------RMMSP 122 (471)
T ss_pred eeeEEEECCc----------ccCCeEEEECCCEEEEEEEeCCCCC----CceeECCccCCCCCCCCcc-------ccCCC
Confidence 3467899998 7789999999999999999999753 3489999988654 44321 34899
Q ss_pred CceEEEEEecCCCCceEEEEEEec-------CCCceeeEEEEEcCCCCCCCCC---CCCCCCCCC-------CC------
Q psy16562 323 GDRVDVIIHTNQSNNLYWMQAKTL-------CDSITAEAVLQYEGEKLTYVSK---RPKSDSFPR-------GK------ 379 (445)
Q Consensus 323 GeR~dv~v~~~~~~G~y~~~~~~~-------~~~~~~~ail~y~~~~~~~~~~---~P~~~~~~~-------~~------ 379 (445)
|++|+|.|..++++|+||||+|.. ..++.+..||+-..+...+.+. ..+...+++ +.
T Consensus 123 G~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~~~ 202 (471)
T PRK10883 123 NADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYNEP 202 (471)
T ss_pred CCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccccc
Confidence 999999999888899999999964 2567676666533221111000 001100000 00
Q ss_pred ---------CCCCCCCCccceeEeeCCcEEEEEEEcCCCCccceEEEE-eCeeEEEEecCCccC-CCeEEeEEEecC
Q psy16562 380 ---------PKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTI-EKHQLQVIASDGTAV-EPLVVDSVTLFP 445 (445)
Q Consensus 380 ---------~~~~~~~~~~~~~~v~~G~~~~~rliN~s~~~Hp~~~hi-hgh~f~Vi~~dG~~~-~p~~~Dtv~v~p 445 (445)
...|+...+ .+++++| +|||||+|++... .+.|+| ++|.|+||+.||..+ +|...+.+.|+|
T Consensus 203 ~~~g~~gd~~lvNG~~~p--~~~v~~~-~~RlRliNas~~~-~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~p 275 (471)
T PRK10883 203 GSGGFVGDTLLVNGVQSP--YVEVSRG-WVRLRLLNASNAR-RYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAP 275 (471)
T ss_pred ccCCccCCeeEECCccCC--eEEecCC-EEEEEEEEccCCc-eEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECC
Confidence 011222222 5788875 7999999999877 789999 899999999997765 699999999886
No 36
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.71 E-value=1.6e-16 Score=157.33 Aligned_cols=181 Identities=9% Similarity=0.062 Sum_probs=121.4
Q ss_pred CCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecC
Q psy16562 243 IKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFP 322 (445)
Q Consensus 243 ~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~p 322 (445)
...+.+++||+ .|+|.|++++|+++++++.|......++.+++|++. +.||... + ..|.|
T Consensus 45 ~~~~~~~~nG~----------~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~----~--~~I~P 104 (311)
T TIGR02376 45 VTYQAMTFDGS----------VPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA----L--TQVNP 104 (311)
T ss_pred eEEEEEEECCc----------ccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc----c--eeECC
Confidence 34578999998 678999999999999999999742235566677653 4577431 1 23899
Q ss_pred CceEEEEEecCCCCceEEEEEEec-------CCCceeeEEEEEcCCCCCCCCC----CCCCC-----C----CC------
Q psy16562 323 GDRVDVIIHTNQSNNLYWMQAKTL-------CDSITAEAVLQYEGEKLTYVSK----RPKSD-----S----FP------ 376 (445)
Q Consensus 323 GeR~dv~v~~~~~~G~y~~~~~~~-------~~~~~~~ail~y~~~~~~~~~~----~P~~~-----~----~~------ 376 (445)
|+++.|.|++++ +|+||||||.. ..++.+..++.-.......... +-++. . ..
T Consensus 105 G~t~ty~F~~~~-~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~ 183 (311)
T TIGR02376 105 GETATLRFKATR-PGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLPEYDKEYYIGESDLYTPKDEGEGGAYEDDVAAM 183 (311)
T ss_pred CCeEEEEEEcCC-CEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCcCcceeEEEeeeeEeccccccccccccchHHHH
Confidence 999999999987 89999999942 3566666555432110000000 00000 0 00
Q ss_pred CCC----CCCCCCCCcc-ceeEeeCCcEEEEEEEcCCCCccceEEEEeCeeEEEEecCCccCCCe--EEeEEEecC
Q psy16562 377 RGK----PKDNSPRVPM-HFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPL--VVDSVTLFP 445 (445)
Q Consensus 377 ~~~----~~~~~~~~~~-~~~~v~~G~~~~~rliN~s~~~Hp~~~hihgh~f~Vi~~dG~~~~p~--~~Dtv~v~p 445 (445)
... ...|+...+. ..+++++|+++||||+|++... .+.||+++++|.+|+.||.++.+. ..|++.|+|
T Consensus 184 ~~~~~~~~~iNG~~~~~~~~~~v~~G~~~RlRiiNa~~~~-~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~P 258 (311)
T TIGR02376 184 RTLTPTHVVFNGAVGALTGDNALTAGVGERVLFVHSQPNR-DSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPG 258 (311)
T ss_pred hcCCCCEEEECCccCCCCCCcccccCCcEEEEEEcCCCCC-CCCCeEecCCceEEEECCcccCCCCCCcceEEECC
Confidence 000 0123321111 1357999999999999998654 466799999999999999999864 379999886
No 37
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.46 E-value=1.5e-12 Score=135.99 Aligned_cols=179 Identities=20% Similarity=0.290 Sum_probs=126.6
Q ss_pred CCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEE-ccCCCcceeeEecEEEecC
Q psy16562 244 KPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVI-ASDGTAVEPLVVDSVTLFP 322 (445)
Q Consensus 244 ~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~vi-a~DG~~v~P~~~~~~~I~p 322 (445)
......+||. .++|.|++++|++++++++|..... .++|||++.+- +.||. ....++.+.+
T Consensus 51 ~~~~~~~~g~----------~~gP~i~~~~Gd~v~l~~~N~l~~~----t~vh~HG~~~p~~~dG~----~~~~~~~~~~ 112 (451)
T COG2132 51 GATVWGYNGA----------LPGPTIRVKKGDTVTLDLTNRLLVD----TSVHWHGLPVPGEMDGV----PPLTQIPPGP 112 (451)
T ss_pred CceeEEeccc----------ccCceEEEecCCEEEEEEEeCCCCC----ceEEEcCcccCccccCC----CcccccCCCC
Confidence 4567778883 6679999999999999999997652 45888987775 56884 2357788999
Q ss_pred CceEEEEEecCCCCceEEEEEEec---CCCceeeEEEEEcCCCCCCCCCCCCC--------------------CCCCCCC
Q psy16562 323 GDRVDVIIHTNQSNNLYWMQAKTL---CDSITAEAVLQYEGEKLTYVSKRPKS--------------------DSFPRGK 379 (445)
Q Consensus 323 GeR~dv~v~~~~~~G~y~~~~~~~---~~~~~~~ail~y~~~~~~~~~~~P~~--------------------~~~~~~~ 379 (445)
|+.+++.|+.++ +|+||||.|.. .+++.+..|+.-...........|.. ...+...
T Consensus 113 ~~~~~y~f~~~~-~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (451)
T COG2132 113 GETPTYTFTQDV-PGTYWYHPHTHGQVYDGLAGALIIEDENSEPLGVDDEPVILQDDWLDEDGTDLYQEGPAMGGFPGDT 191 (451)
T ss_pred CCcEEEeecCCC-CcceEeccCCCchhhcccceeEEEeCCCCCCCCCCceEEEEEeeeecCCCCccccCCccccCCCCCe
Confidence 999999999987 56999999986 36777777776554332100000000 0000000
Q ss_pred CCCCCCCCccceeEeeCCcEEEEEEEcCCCCccceEEEEeCeeEEEEecCCccCCCeEEeEEEecC
Q psy16562 380 PKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFP 445 (445)
Q Consensus 380 ~~~~~~~~~~~~~~v~~G~~~~~rliN~s~~~Hp~~~hihgh~f~Vi~~dG~~~~p~~~Dtv~v~p 445 (445)
...++... .+...++.+|||||+|++... ++.+++.++.|+|+++||.+++|..+|.+.|.|
T Consensus 192 ~~vnG~~~---p~~~~~~g~~rlRl~n~~~~~-~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p 253 (451)
T COG2132 192 LLVNGAIL---PFKAVPGGVVRLRLLNAGNAR-TYHLALGGGPLTVIAVDGGPLPPVSVDELYLAP 253 (451)
T ss_pred EEECCCcc---ceeecCCCeEEEEEEecCCce-EEEEEecCceEEEEEeCCcCcCceeeeeEEecC
Confidence 01111111 355566777999999998555 577888899999999999999998889988875
No 38
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=99.25 E-value=6.4e-12 Score=106.79 Aligned_cols=95 Identities=18% Similarity=0.278 Sum_probs=78.1
Q ss_pred CCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEc---cCCCcceeeEecEEEec
Q psy16562 245 PDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIA---SDGTAVEPLVVDSVTLF 321 (445)
Q Consensus 245 ~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via---~DG~~v~P~~~~~~~I~ 321 (445)
...+++||+ .|+|+|++++||++++++.|..... .+||+|++.+.. .||.+- +.+..|.
T Consensus 14 ~~~~~~ng~----------~pGPtI~v~~Gd~v~i~~~N~l~~~----~siH~HG~~~~~~~~~DG~~~----~~~~~i~ 75 (117)
T PF07732_consen 14 RKVWTYNGQ----------FPGPTIRVREGDTVRITVTNNLDEP----TSIHWHGLHQPPSPWMDGVPG----VTQCPIA 75 (117)
T ss_dssp EEEEEETTB----------SSEEEEEEETTEEEEEEEEEESSSG----BSEEEETSBSTTGGGGSGGTT----TSGSSBS
T ss_pred EEEEEECCC----------CCCCEEEEEcCCeeEEEEEeccccc----cccccceeeeeeeeecCCccc----ccceeEE
Confidence 578999999 7889999999999999999999653 337788877754 588543 4567799
Q ss_pred CCceEEEEEecCCCCceEEEEEEec---CCCceeeEEEE
Q psy16562 322 PGDRVDVIIHTNQSNNLYWMQAKTL---CDSITAEAVLQ 357 (445)
Q Consensus 322 pGeR~dv~v~~~~~~G~y~~~~~~~---~~~~~~~ail~ 357 (445)
||++++|.|.+++++|+||||+|.. ..++.+..|++
T Consensus 76 pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~ 114 (117)
T PF07732_consen 76 PGESFTYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVE 114 (117)
T ss_dssp TTEEEEEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE
T ss_pred eecceeeeEeeeccccceeEeeCCCchhcCcCEEEEEEc
Confidence 9999999999998889999999987 36677776664
No 39
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.08 E-value=7.6e-10 Score=94.94 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=72.9
Q ss_pred CceEEEEEEEEEeeecCccccccCCCcccccccceeecCCCeEEEEE-EECCCCCCCeEEEEcCCEEEEEEEecCCC-CC
Q psy16562 55 PLVCYYSFTLENYATVGPACADCLKGNQKACRRKGCVTADGFERAIL-SINRQLPGPSIQVCKGDTIIVDVKNHMID-RE 132 (445)
Q Consensus 55 p~~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~-~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~-~~ 132 (445)
...++|+.+|+.|.+..+ .....|+....+ +.|+++..+.|+|++||+|.++|.|..+. ..
T Consensus 22 ~~~~~f~~~i~~~~~~~~-----------------~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~ 84 (135)
T TIGR03096 22 AAEQSFTVVINAYDTTIP-----------------ELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEG 84 (135)
T ss_pred hccceeEEEEeccccEee-----------------EEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccc
Confidence 345589999997754332 123567766666 99999999999999999999999998751 22
Q ss_pred ceEeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecCCCcceEEeccc
Q psy16562 133 VTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV 183 (445)
Q Consensus 133 tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~~~GT~wYH~H~ 183 (445)
.++++||+ +-.|+||++.+|+|.+.++|+|||||-.
T Consensus 85 f~i~~~gi---------------s~~I~pGet~TitF~adKpG~Y~y~C~~ 120 (135)
T TIGR03096 85 FSIDAYGI---------------SEVIKAGETKTISFKADKAGAFTIWCQL 120 (135)
T ss_pred eEECCCCc---------------ceEECCCCeEEEEEECCCCEEEEEeCCC
Confidence 23333321 1258999999999999999999999964
No 40
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.83 E-value=5.8e-09 Score=91.02 Aligned_cols=90 Identities=21% Similarity=0.352 Sum_probs=72.1
Q ss_pred CCCeEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCc---------------ccccCCCCCCceEEEEecC
Q psy16562 108 PGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM---------------VTQCPIPSSTTFRYKFPAM 172 (445)
Q Consensus 108 PGPtI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~---------------~tq~pI~pG~~~~Y~f~~~ 172 (445)
-.+.+.++.|+.+++.+.|... .+..+|+||....... .++.+. .--..|+||+..+.+|.++
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~~-~~Hp~HlHG~~F~vl~-~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~ 109 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNGS-MPHPFHLHGHSFQVLG-RGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD 109 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECTT-SSEEEEETTSEEEEEE-ETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET
T ss_pred CcceEEEeCCCEEEEEEECCCC-CccceEEEeeEEEeee-cCCcccccccccccccccCcccccccccceeEEEEEEEee
Confidence 3569999999999999999877 7999999999864221 222221 0112478999999999999
Q ss_pred CCcceEEecccchhhhcCceeEEEEeC
Q psy16562 173 PSGTFFYHSHVGLQKMDGLEGSMIIRT 199 (445)
Q Consensus 173 ~~GT~wYH~H~~~q~~~Gl~G~lIV~~ 199 (445)
.+|.|.||||...+...||++.+.|.+
T Consensus 110 ~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 110 NPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp STEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred cceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 999999999999999999999999964
No 41
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.82 E-value=5.4e-09 Score=93.80 Aligned_cols=56 Identities=38% Similarity=0.651 Sum_probs=50.3
Q ss_pred cceeEeeCCcEEEEEEEcCCCCccceEEEEeCeeEEEEecCCccCCCeEEeEEEecC
Q psy16562 389 MHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFP 445 (445)
Q Consensus 389 ~~~~~v~~G~~~~~rliN~s~~~Hp~~~hihgh~f~Vi~~dG~~~~p~~~Dtv~v~p 445 (445)
...+++++|+++||||||++... .+.|+|+||.|+||+.||.+++|...|++.|+|
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~~~-~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~ 114 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGAST-SFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAP 114 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESSS--BEEEEETTBCEEEEEETTEEEEEEEESBEEE-T
T ss_pred cceEEEcCCcEEEEEEEeccCCe-eEEEEeeccceeEeeeccccccccccceEEeeC
Confidence 44799999999999999998876 688899999999999999999999999999876
No 42
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.65 E-value=2.9e-07 Score=80.26 Aligned_cols=78 Identities=18% Similarity=0.306 Sum_probs=70.3
Q ss_pred cceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcc-----------eeeEecEEEecCCceEEEEEecCC
Q psy16562 266 MHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAV-----------EPLVVDSVTLFPGDRVDVIIHTNQ 334 (445)
Q Consensus 266 ~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v-----------~P~~~~~~~I~pGeR~dv~v~~~~ 334 (445)
...+.++.|+.++|+|.|.+.. .+.|++|||.|.|++.++... .|...|++.|.||++..+.+.++.
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~--~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~ 110 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSM--PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN 110 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTS--SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS
T ss_pred cceEEEeCCCEEEEEEECCCCC--ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeec
Confidence 4689999999999999998876 467889999999999988773 477899999999999999999985
Q ss_pred CCceEEEEEEec
Q psy16562 335 SNNLYWMQAKTL 346 (445)
Q Consensus 335 ~~G~y~~~~~~~ 346 (445)
+|.|.+|||..
T Consensus 111 -~G~w~~HCHi~ 121 (138)
T PF07731_consen 111 -PGPWLFHCHIL 121 (138)
T ss_dssp -TEEEEEEESSH
T ss_pred -ceEEEEEEchH
Confidence 89999999987
No 43
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.28 E-value=4.7e-06 Score=73.69 Aligned_cols=99 Identities=15% Similarity=0.185 Sum_probs=66.1
Q ss_pred CCCCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEE---EccCCCcceeeEecE
Q psy16562 241 TRIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQV---IASDGTAVEPLVVDS 317 (445)
Q Consensus 241 ~~~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~v---ia~DG~~v~P~~~~~ 317 (445)
.++....+.+||... |.|++++|++++|++.|.+.. ..+.|.|+++.... -..||.+. ..+
T Consensus 37 ~~~~~~~f~~~~~~~-----------P~I~v~~Gd~V~v~v~N~~~~-~~H~~~I~~~g~~~~~~p~mdG~~~----~~~ 100 (148)
T TIGR03095 37 PGPSMYSFEIHDLKN-----------PTIVIPEGVTVHFTVINTDTD-SGHNFDISKRGPPYPYMPGMDGLGF----VAG 100 (148)
T ss_pred CCCCceeEEecCCCC-----------CEEEEcCCCEEEEEEEeCCCC-ccccEEeecCCCccccccccCCCCc----ccc
Confidence 345677899999744 699999999999999999763 24556666554322 13577432 223
Q ss_pred EEecC----Cce--EEEEEecCCCCceEEEEEEecC---CCceeeEEE
Q psy16562 318 VTLFP----GDR--VDVIIHTNQSNNLYWMQAKTLC---DSITAEAVL 356 (445)
Q Consensus 318 ~~I~p----GeR--~dv~v~~~~~~G~y~~~~~~~~---~~~~~~ail 356 (445)
..+.| |+. .++.+++++ +|+|||||+..| .++.+..++
T Consensus 101 ~~i~p~~~~g~~~~~~~tf~f~~-aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 101 TGFLPPPKSGKFGYTDFTYHFST-AGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred CcccCCCCCCccceeEEEEECCC-CeEEEEEcCChhHHHCCCEEEEEE
Confidence 33333 433 478888876 899999998762 456655443
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.24 E-value=5.4e-06 Score=68.28 Aligned_cols=84 Identities=12% Similarity=0.203 Sum_probs=56.4
Q ss_pred CCCCeEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCcc--cccCCCCCCceEEEEecCCCcceEEecccc
Q psy16562 107 LPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMV--TQCPIPSSTTFRYKFPAMPSGTFFYHSHVG 184 (445)
Q Consensus 107 ~PGPtI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~~--tq~pI~pG~~~~Y~f~~~~~GT~wYH~H~~ 184 (445)
|--..|++++||+| ++.|.-. .++++..+....... ..+..+.. +.--+.||+++++.|.. +|+|.|||.
T Consensus 14 F~P~~i~v~~G~~V--~~~N~~~-~~H~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pG~t~~~tF~~--~G~y~y~C~-- 85 (99)
T TIGR02656 14 FEPAKISIAAGDTV--EWVNNKG-GPHNVVFDEDAVPAG-VKELAKSLSHKDLLNSPGESYEVTFST--PGTYTFYCE-- 85 (99)
T ss_pred EeCCEEEECCCCEE--EEEECCC-CCceEEECCCCCccc-hhhhcccccccccccCCCCEEEEEeCC--CEEEEEEcC--
Confidence 33468999999986 5668654 567776654321110 00001111 12246899999998885 999999998
Q ss_pred hhhhcCceeEEEEe
Q psy16562 185 LQKMDGLEGSMIIR 198 (445)
Q Consensus 185 ~q~~~Gl~G~lIV~ 198 (445)
.+...||.|.|+|+
T Consensus 86 ~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 86 PHRGAGMVGKITVE 99 (99)
T ss_pred CccccCCEEEEEEC
Confidence 67888999999984
No 45
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.07 E-value=1.1e-05 Score=66.33 Aligned_cols=83 Identities=19% Similarity=0.207 Sum_probs=53.4
Q ss_pred CCeEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCC-CCCcccccCCCCCCceEEEEecCCCcceEEecccchhh
Q psy16562 109 GPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMD-GVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQK 187 (445)
Q Consensus 109 GPtI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~D-Gvp~~tq~pI~pG~~~~Y~f~~~~~GT~wYH~H~~~q~ 187 (445)
-+.|++++||+|. +.|... .++++.+=--........+ ..+......+.||+++++.|+ .+|+|.|+|- - |.
T Consensus 16 P~~i~V~~G~tV~--~~n~~~-~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~--~~G~y~y~C~-P-H~ 88 (99)
T PF00127_consen 16 PSEITVKAGDTVT--FVNNDS-MPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT--KPGTYEYYCT-P-HY 88 (99)
T ss_dssp SSEEEEETTEEEE--EEEESS-SSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE--SSEEEEEEET-T-TG
T ss_pred CCEEEECCCCEEE--EEECCC-CCceEEEecccccccccccccCccccceecCCCCEEEEEeC--CCeEEEEEcC-C-Cc
Confidence 3789999999865 666533 4566655321000000000 000001124789999999998 8999999998 4 88
Q ss_pred hcCceeEEEEe
Q psy16562 188 MDGLEGSMIIR 198 (445)
Q Consensus 188 ~~Gl~G~lIV~ 198 (445)
..||.|.|+|+
T Consensus 89 ~~GM~G~i~V~ 99 (99)
T PF00127_consen 89 EAGMVGTIIVE 99 (99)
T ss_dssp GTTSEEEEEEE
T ss_pred ccCCEEEEEEC
Confidence 88999999995
No 46
>PRK02710 plastocyanin; Provisional
Probab=97.99 E-value=3.5e-05 Score=65.67 Aligned_cols=76 Identities=14% Similarity=0.330 Sum_probs=55.0
Q ss_pred CCCCeEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecCCCcceEEecccchh
Q psy16562 107 LPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQ 186 (445)
Q Consensus 107 ~PGPtI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~~~GT~wYH~H~~~q 186 (445)
|--+.|++++||+| ++.|... .++++.+.|.. +.. .+.-.+.||++++|.|.. +|+|-|+|- .|
T Consensus 44 F~P~~i~v~~Gd~V--~~~N~~~-~~H~v~~~~~~--------~~~-~~~~~~~pg~t~~~tF~~--~G~y~y~C~--~H 107 (119)
T PRK02710 44 FEPSTLTIKAGDTV--KWVNNKL-APHNAVFDGAK--------ELS-HKDLAFAPGESWEETFSE--AGTYTYYCE--PH 107 (119)
T ss_pred EeCCEEEEcCCCEE--EEEECCC-CCceEEecCCc--------ccc-ccccccCCCCEEEEEecC--CEEEEEEcC--CC
Confidence 33478999999985 5678754 57777765431 110 111247899999999986 899999997 56
Q ss_pred hhcCceeEEEEe
Q psy16562 187 KMDGLEGSMIIR 198 (445)
Q Consensus 187 ~~~Gl~G~lIV~ 198 (445)
...||.|.|+|+
T Consensus 108 ~~~gM~G~I~V~ 119 (119)
T PRK02710 108 RGAGMVGKITVE 119 (119)
T ss_pred ccCCcEEEEEEC
Confidence 678999999984
No 47
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.84 E-value=5.4e-05 Score=65.24 Aligned_cols=72 Identities=13% Similarity=0.159 Sum_probs=57.1
Q ss_pred CeE-EEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCc
Q psy16562 246 DAI-LINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGD 324 (445)
Q Consensus 246 ~~~-lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGe 324 (445)
..+ ..||+..| +.|+|++|+++.|++.|.... ++.+.++++++ +..|.||+
T Consensus 49 ~~i~a~n~~~~P----------~~I~VkaGD~Vtl~vtN~d~~--~H~f~i~~~gi----------------s~~I~pGe 100 (135)
T TIGR03096 49 KNIRAFNVLNEP----------EALVVKKGTPVKVTVENKSPI--SEGFSIDAYGI----------------SEVIKAGE 100 (135)
T ss_pred EEEEeeeeEEcC----------CEEEECCCCEEEEEEEeCCCC--ccceEECCCCc----------------ceEECCCC
Confidence 344 66777444 689999999999999998863 56666766531 45689999
Q ss_pred eEEEEEecCCCCceEEEEEEec
Q psy16562 325 RVDVIIHTNQSNNLYWMQAKTL 346 (445)
Q Consensus 325 R~dv~v~~~~~~G~y~~~~~~~ 346 (445)
+..+.|.+++ +|.|+|+|...
T Consensus 101 t~TitF~adK-pG~Y~y~C~~H 121 (135)
T TIGR03096 101 TKTISFKADK-AGAFTIWCQLH 121 (135)
T ss_pred eEEEEEECCC-CEEEEEeCCCC
Confidence 9999999998 89999999765
No 48
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=97.74 E-value=4.1e-05 Score=63.50 Aligned_cols=83 Identities=14% Similarity=0.243 Sum_probs=46.5
Q ss_pred EEEEEEECCCCCCCeEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecCCCcc
Q psy16562 97 ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGT 176 (445)
Q Consensus 97 ~~~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~~~GT 176 (445)
...+..-|+.|=-..|+++.|++++|.+.|... ..+.+...++... -.|.||++.++.|.+.++|+
T Consensus 22 ~v~I~~~~~~f~P~~i~v~~G~~v~l~~~N~~~-~~h~~~i~~~~~~-------------~~l~~g~~~~~~f~~~~~G~ 87 (104)
T PF13473_consen 22 TVTITVTDFGFSPSTITVKAGQPVTLTFTNNDS-RPHEFVIPDLGIS-------------KVLPPGETATVTFTPLKPGE 87 (104)
T ss_dssp --------EEEES-EEEEETTCEEEEEEEE-SS-S-EEEEEGGGTEE-------------EEE-TT-EEEEEEEE-S-EE
T ss_pred cccccccCCeEecCEEEEcCCCeEEEEEEECCC-CcEEEEECCCceE-------------EEECCCCEEEEEEcCCCCEE
Confidence 334444456665569999999999999999976 4544444442211 25899999999999999999
Q ss_pred eEEecccchhhhcCceeEEEE
Q psy16562 177 FFYHSHVGLQKMDGLEGSMII 197 (445)
Q Consensus 177 ~wYH~H~~~q~~~Gl~G~lIV 197 (445)
|=|+|-... . |.|-|||
T Consensus 88 y~~~C~~~~---~-m~G~liV 104 (104)
T PF13473_consen 88 YEFYCTMHP---N-MKGTLIV 104 (104)
T ss_dssp EEEB-SSS----T-TB-----
T ss_pred EEEEcCCCC---c-ceecccC
Confidence 999998554 2 6677765
No 49
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.71 E-value=0.00023 Score=56.56 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=49.0
Q ss_pred CCeEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecCCCcceEEecccchhhh
Q psy16562 109 GPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQKM 188 (445)
Q Consensus 109 GPtI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~~~GT~wYH~H~~~q~~ 188 (445)
-+.|+++.||+|. +.|... .+++++.....-.. .+ ..-..+.||+++++.| .++|+|-|||-...
T Consensus 10 P~~i~v~~GdtVt--~~N~d~-~~Hnv~~~~g~~~~---~~----~~~~~~~~g~~~~~tf--~~~G~y~y~C~~Hp--- 74 (83)
T TIGR02657 10 TPELHVKVGDTVT--WINREA-MPHNVHFVAGVLGE---AA----LKGPMMKKEQAYSLTF--TEAGTYDYHCTPHP--- 74 (83)
T ss_pred CCEEEECCCCEEE--EEECCC-CCccEEecCCCCcc---cc----ccccccCCCCEEEEEC--CCCEEEEEEcCCCC---
Confidence 4789999999975 678765 67777765432111 11 0001256787777655 57999999996432
Q ss_pred cCceeEEEEe
Q psy16562 189 DGLEGSMIIR 198 (445)
Q Consensus 189 ~Gl~G~lIV~ 198 (445)
+|.|.|+|+
T Consensus 75 -~M~G~v~V~ 83 (83)
T TIGR02657 75 -FMRGKVVVE 83 (83)
T ss_pred -CCeEEEEEC
Confidence 489999985
No 50
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.70 E-value=0.00019 Score=76.40 Aligned_cols=96 Identities=25% Similarity=0.323 Sum_probs=68.6
Q ss_pred ecCCCeEE--EEEEECCCCCCCeEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCcccccCCCCCCceEEE
Q psy16562 91 VTADGFER--AILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYK 168 (445)
Q Consensus 91 ~~~dG~~~--~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~ 168 (445)
+..+|.+. .+....-.|=-+.|+|++||.|.++++|.-..+-.+ ||+...+. |+-. -+.||++.+..
T Consensus 534 v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi---HGF~Ip~~----nI~~----dv~PG~t~svt 602 (635)
T PRK02888 534 VIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT---HGFAIPNY----GVNM----EVAPQATASVT 602 (635)
T ss_pred eEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc---cceeeccc----CccE----EEcCCceEEEE
Confidence 44566433 455555566556899999999999999953211122 77766431 1211 47799999999
Q ss_pred EecCCCcceEEeccc---chhhhcCceeEEEEeC
Q psy16562 169 FPAMPSGTFFYHSHV---GLQKMDGLEGSMIIRT 199 (445)
Q Consensus 169 f~~~~~GT~wYH~H~---~~q~~~Gl~G~lIV~~ 199 (445)
|++.++|+|||||.. ..|. +|.|-|+|++
T Consensus 603 F~adkPGvy~~~CtefCGa~H~--~M~G~~iVep 634 (635)
T PRK02888 603 FTADKPGVYWYYCTWFCHALHM--EMRGRMLVEP 634 (635)
T ss_pred EEcCCCEEEEEECCcccccCcc--cceEEEEEEe
Confidence 999999999999985 3443 8999999975
No 51
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.37 E-value=0.00088 Score=56.66 Aligned_cols=76 Identities=12% Similarity=0.164 Sum_probs=49.5
Q ss_pred CCeEEEEcCCEEEEEEEecCCCCCceEee-CCcccCCCCCCCCCCcccccCCCCCCceEEEEecCCCcceEEecccchhh
Q psy16562 109 GPSIQVCKGDTIIVDVKNHMIDREVTLHW-HGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQK 187 (445)
Q Consensus 109 GPtI~v~~GD~v~V~v~N~l~~~~tsiHw-HG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~~~GT~wYH~H~~~q~ 187 (445)
...|.|++||+|+....|. ++++.+ .+. .-+|.... .-.+|+++++.| +.+|+|-|+|- .|.
T Consensus 14 P~~v~V~~GdTV~f~n~d~----~Hnv~~~~~~------~p~g~~~~---~s~~g~~~~~tF--~~~G~Y~Y~C~--pH~ 76 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK----GHNVETIKGM------IPEGAEAF---KSKINEEYTVTV--TEEGVYGVKCT--PHY 76 (116)
T ss_pred CCEEEECCCCEEEEEECCC----CeeEEEccCC------CcCCcccc---cCCCCCEEEEEe--CCCEEEEEEcC--CCc
Confidence 4689999999977555443 344443 221 11222211 123566655555 58999999997 678
Q ss_pred hcCceeEEEEeCCC
Q psy16562 188 MDGLEGSMIIRTPK 201 (445)
Q Consensus 188 ~~Gl~G~lIV~~~~ 201 (445)
..||.|.|+|.++.
T Consensus 77 ~~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 77 GMGMVALIQVGDPP 90 (116)
T ss_pred cCCCEEEEEECCCC
Confidence 88999999998753
No 52
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.20 E-value=0.0038 Score=55.96 Aligned_cols=96 Identities=16% Similarity=0.121 Sum_probs=67.9
Q ss_pred EEECCCCCC-CeEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCC-------CCCCCCcc----c-----ccCCCCCC
Q psy16562 101 LSINRQLPG-PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTP-------WMDGVPMV----T-----QCPIPSST 163 (445)
Q Consensus 101 ~~~Ng~~PG-PtI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~-------~~DGvp~~----t-----q~pI~pG~ 163 (445)
+-+||+-.| |+|.+-.|-+|.|+++|.-. .++++-. -+..++ ..||.... + -..|.+|+
T Consensus 75 fNfnGts~G~mtIyiPaGw~V~V~f~N~e~-~pHnl~i---v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gq 150 (195)
T TIGR03094 75 FNFNGTSYGAMTIYLPAGWNVYVTFTNYES-LPHNLKL---LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGH 150 (195)
T ss_pred ccccCccCCceEEEEeCCCEEEEEEEcCCC-CCccEEE---ecCCCCCCCccccccCceeEeecccccCccccccccccc
Confidence 456676555 69999999999999999864 4544333 333332 24554322 1 12356788
Q ss_pred ceEEEEecCCCcceEEecccchhhhcCceeEEEEeCC
Q psy16562 164 TFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTP 200 (445)
Q Consensus 164 ~~~Y~f~~~~~GT~wYH~H~~~q~~~Gl~G~lIV~~~ 200 (445)
+-.-.|..-++|+|||-|-...|..+||+|-+||-..
T Consensus 151 s~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 151 SRSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred eeEEEeccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 8555566669999999999999999999999999654
No 53
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.19 E-value=0.0026 Score=53.68 Aligned_cols=77 Identities=18% Similarity=0.288 Sum_probs=50.5
Q ss_pred CCCCeEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecCCCcceEEecccchh
Q psy16562 107 LPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQ 186 (445)
Q Consensus 107 ~PGPtI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~~~GT~wYH~H~~~q 186 (445)
|=-..|.|++||+|. +.|+....++++..-+ ...+ | .......+|++|+|.|. ++|+|-|+|- .|
T Consensus 39 F~P~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~f-~----s~~~~~~~G~t~s~Tf~--~~G~Y~Y~C~--pH 103 (115)
T TIGR03102 39 FDPPAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGDL-D----ESERVSEEGTTYEHTFE--EPGIYLYVCV--PH 103 (115)
T ss_pred EeCCEEEECCCCEEE--EEECCCCCCEEEEECC----CCCc-c----ccccccCCCCEEEEEec--CCcEEEEEcc--CC
Confidence 334689999999977 6654332455554311 0001 1 01112578998888884 7999999996 45
Q ss_pred hhcCceeEEEEe
Q psy16562 187 KMDGLEGSMIIR 198 (445)
Q Consensus 187 ~~~Gl~G~lIV~ 198 (445)
...||.|.|+|+
T Consensus 104 ~~~gM~G~I~V~ 115 (115)
T TIGR03102 104 EALGMKGAVVVE 115 (115)
T ss_pred CCCCCEEEEEEC
Confidence 667999999984
No 54
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.05 E-value=0.0034 Score=53.81 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=50.8
Q ss_pred CeEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecCCCcceEEecccchhhhc
Q psy16562 110 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQKMD 189 (445)
Q Consensus 110 PtI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~~~GT~wYH~H~~~q~~~ 189 (445)
-.|+|.+||+|+ +.|... ..++++.=+..- .+|.-.+ .-.+|++|++.|. .+|+|-|+|- .|+.+
T Consensus 54 A~v~v~pGDTVt--w~~~d~-~~Hnv~~~~~~~-----~~g~~~~---~~~~~~s~~~Tfe--~~G~Y~Y~C~--PH~~~ 118 (128)
T COG3794 54 AEVTVKPGDTVT--WVNTDS-VGHNVTAVGGMD-----PEGSGTL---KAGINESFTHTFE--TPGEYTYYCT--PHPGM 118 (128)
T ss_pred cEEEECCCCEEE--EEECCC-CCceEEEeCCCC-----ccccccc---ccCCCcceEEEec--ccceEEEEec--cCCCC
Confidence 389999999955 777765 466666554331 1233221 2344577776665 4999999995 35778
Q ss_pred CceeEEEEeC
Q psy16562 190 GLEGSMIIRT 199 (445)
Q Consensus 190 Gl~G~lIV~~ 199 (445)
||.|.|+|++
T Consensus 119 gM~G~IvV~~ 128 (128)
T COG3794 119 GMKGKIVVGE 128 (128)
T ss_pred CcEEEEEeCC
Confidence 9999999964
No 55
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.97 E-value=0.0088 Score=54.66 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=70.8
Q ss_pred EEEEECCCCCC-CeEEEEcCCEEEEEEEecCCCCCceEee--CCcccCC--CCCCCCCCc---------ccccCCCCCCc
Q psy16562 99 AILSINRQLPG-PSIQVCKGDTIIVDVKNHMIDREVTLHW--HGVYQKV--TPWMDGVPM---------VTQCPIPSSTT 164 (445)
Q Consensus 99 ~~~~~Ng~~PG-PtI~v~~GD~v~V~v~N~l~~~~tsiHw--HG~~~~~--~~~~DGvp~---------~tq~pI~pG~~ 164 (445)
..+.|||..=| ++|.+-.|-+|.|+++|.-. .++++-. -+..++. .-..||..- .+-..|.+|++
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~-l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s 152 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQES-LPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQS 152 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCC-CCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCce
Confidence 36788887554 69999999999999999743 3322221 1111111 113444221 11235789999
Q ss_pred eEEEEecCCCcceEEecccchhhhcCceeEEEEeCC
Q psy16562 165 FRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTP 200 (445)
Q Consensus 165 ~~Y~f~~~~~GT~wYH~H~~~q~~~Gl~G~lIV~~~ 200 (445)
..-.|..-++|+||+=|-...|...||++-|||.+.
T Consensus 153 ~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 153 ASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred eeEEEccCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 987787779999999999999999999999999764
No 56
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.53 E-value=0.015 Score=48.02 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=42.1
Q ss_pred ceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEec
Q psy16562 267 HFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTL 346 (445)
Q Consensus 267 ~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~ 346 (445)
..+++++|++++|.+.|.+.. .+.|.+.+.. ....|.||++..+.|.+.+ +|+|-++|...
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~--~h~~~i~~~~----------------~~~~l~~g~~~~~~f~~~~-~G~y~~~C~~~ 95 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSR--PHEFVIPDLG----------------ISKVLPPGETATVTFTPLK-PGEYEFYCTMH 95 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS---EEEEEGGGT----------------EEEEE-TT-EEEEEEEE-S--EEEEEB-SSS
T ss_pred CEEEEcCCCeEEEEEEECCCC--cEEEEECCCc----------------eEEEECCCCEEEEEEcCCC-CEEEEEEcCCC
Confidence 489999999999999999876 3566665511 2256899999999997766 89999988653
No 57
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=96.29 E-value=0.019 Score=47.07 Aligned_cols=79 Identities=9% Similarity=0.072 Sum_probs=46.2
Q ss_pred cceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEe
Q psy16562 266 MHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKT 345 (445)
Q Consensus 266 ~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~ 345 (445)
...|+|++|++|+|. |.+.. ++.+.++.-.+..-+.+.. .....+.+.+.||+++++.|+. +|+|.|+|..
T Consensus 16 P~~i~v~~G~~V~~~--N~~~~--~H~~~~~~~~~~~~~~~~~--~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~~ 86 (99)
T TIGR02656 16 PAKISIAAGDTVEWV--NNKGG--PHNVVFDEDAVPAGVKELA--KSLSHKDLLNSPGESYEVTFST---PGTYTFYCEP 86 (99)
T ss_pred CCEEEECCCCEEEEE--ECCCC--CceEEECCCCCccchhhhc--ccccccccccCCCCEEEEEeCC---CEEEEEEcCC
Confidence 458999999998765 76643 3454443221110000000 0111255778999999997764 7999999974
Q ss_pred c-CCCceee
Q psy16562 346 L-CDSITAE 353 (445)
Q Consensus 346 ~-~~~~~~~ 353 (445)
. ..++.+.
T Consensus 87 H~~aGM~G~ 95 (99)
T TIGR02656 87 HRGAGMVGK 95 (99)
T ss_pred ccccCCEEE
Confidence 4 2344444
No 58
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.52 E-value=0.062 Score=57.66 Aligned_cols=67 Identities=13% Similarity=0.268 Sum_probs=49.4
Q ss_pred cccceEEEecCcEEEEEEEccCC-CceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEE
Q psy16562 264 VPMHFFKVQRDKRYLMRIIGGSC-LACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQ 342 (445)
Q Consensus 264 ~p~~~i~v~~G~~~rlRliN~~~-~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~ 342 (445)
+....|+|+.|+.|.|+|.|... ..-.+.|.|.++.+ .+.+.||+.-.+.|++++ ||.||++
T Consensus 552 f~p~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI----------------~~dv~PG~t~svtF~adk-PGvy~~~ 614 (635)
T PRK02888 552 FGLREFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV----------------NMEVAPQATASVTFTADK-PGVYWYY 614 (635)
T ss_pred cCCceEEecCCCEEEEEEEeCCcccccccceeecccCc----------------cEEEcCCceEEEEEEcCC-CEEEEEE
Confidence 45568999999999999999643 11133444433332 235779999999999998 8999999
Q ss_pred EEecC
Q psy16562 343 AKTLC 347 (445)
Q Consensus 343 ~~~~~ 347 (445)
|.-.|
T Consensus 615 CtefC 619 (635)
T PRK02888 615 CTWFC 619 (635)
T ss_pred CCccc
Confidence 98776
No 59
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.22 E-value=0.17 Score=46.43 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=57.7
Q ss_pred eEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEec--cc---ceEEEccCCCcce-----eeEec
Q psy16562 247 AILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIE--KH---QLQVIASDGTAVE-----PLVVD 316 (445)
Q Consensus 247 ~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~--gh---~~~via~DG~~v~-----P~~~~ 316 (445)
.+-+||...- -.+|.|..|-+|.|+++|.+... ++|-|- +- ....++.||..+. +....
T Consensus 75 ~~nfnGts~G---------~m~i~VPAGw~V~i~f~N~~~l~--Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~ 143 (196)
T PF06525_consen 75 PFNFNGTSNG---------QMTIYVPAGWNVQITFTNQESLP--HNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYT 143 (196)
T ss_pred ceeeecccCC---------cEEEEEcCCCEEEEEEEcCCCCC--eeEEEEeCCCCCCCccccCCCCceeeeccCCCCccc
Confidence 4556775332 25899999999999999998654 444442 21 2345667886552 11112
Q ss_pred EEEecCCceEEEEEecCCCCceEEEEEEec
Q psy16562 317 SVTLFPGDRVDVIIHTNQSNNLYWMQAKTL 346 (445)
Q Consensus 317 ~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~ 346 (445)
.--|.+||+....+..-. +|.||+.|--.
T Consensus 144 ~~GI~~G~s~~~~~~~l~-aG~YwlvC~ip 172 (196)
T PF06525_consen 144 SNGISSGQSASGVYNDLP-AGYYWLVCGIP 172 (196)
T ss_pred cCCccCCceeeEEEccCC-CceEEEEccCC
Confidence 235679999997775433 89999998554
No 60
>PRK02710 plastocyanin; Provisional
Probab=94.45 E-value=0.21 Score=42.40 Aligned_cols=70 Identities=7% Similarity=0.110 Sum_probs=44.8
Q ss_pred cceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEe
Q psy16562 266 MHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKT 345 (445)
Q Consensus 266 ~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~ 345 (445)
...|++++|++|+| +|.... ++++.+++. ++ .....+.+.||+++++.|+. +|.|.|+|..
T Consensus 46 P~~i~v~~Gd~V~~--~N~~~~--~H~v~~~~~-------~~-----~~~~~~~~~pg~t~~~tF~~---~G~y~y~C~~ 106 (119)
T PRK02710 46 PSTLTIKAGDTVKW--VNNKLA--PHNAVFDGA-------KE-----LSHKDLAFAPGESWEETFSE---AGTYTYYCEP 106 (119)
T ss_pred CCEEEEcCCCEEEE--EECCCC--CceEEecCC-------cc-----ccccccccCCCCEEEEEecC---CEEEEEEcCC
Confidence 35899999998776 476543 345544421 11 11234568999999988764 7999999965
Q ss_pred c-CCCceeeE
Q psy16562 346 L-CDSITAEA 354 (445)
Q Consensus 346 ~-~~~~~~~a 354 (445)
. ..++.+..
T Consensus 107 H~~~gM~G~I 116 (119)
T PRK02710 107 HRGAGMVGKI 116 (119)
T ss_pred CccCCcEEEE
Confidence 4 33444443
No 61
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=93.52 E-value=0.19 Score=41.03 Aligned_cols=77 Identities=16% Similarity=0.216 Sum_probs=46.2
Q ss_pred cccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcc--e----eeEecEEEecCCceEEEEEecCCCCc
Q psy16562 264 VPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAV--E----PLVVDSVTLFPGDRVDVIIHTNQSNN 337 (445)
Q Consensus 264 ~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v--~----P~~~~~~~I~pGeR~dv~v~~~~~~G 337 (445)
+....|+|++|++|+| +|.... .+++.+ .. |+.+. + +..-....+.||+.+++.|+ .+|
T Consensus 14 F~P~~i~V~~G~tV~~--~n~~~~--~Hnv~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G 78 (99)
T PF00127_consen 14 FDPSEITVKAGDTVTF--VNNDSM--PHNVVF-------VA-DGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPG 78 (99)
T ss_dssp EESSEEEEETTEEEEE--EEESSS--SBEEEE-------ET-TSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSE
T ss_pred EeCCEEEECCCCEEEE--EECCCC--CceEEE-------ec-ccccccccccccCccccceecCCCCEEEEEeC---CCe
Confidence 4456899999998765 554332 223332 22 32211 1 11115677999999999887 379
Q ss_pred eEEEEEEec-CCCceeeEE
Q psy16562 338 LYWMQAKTL-CDSITAEAV 355 (445)
Q Consensus 338 ~y~~~~~~~-~~~~~~~ai 355 (445)
+|.|.|... ..++.+..+
T Consensus 79 ~y~y~C~PH~~~GM~G~i~ 97 (99)
T PF00127_consen 79 TYEYYCTPHYEAGMVGTII 97 (99)
T ss_dssp EEEEEETTTGGTTSEEEEE
T ss_pred EEEEEcCCCcccCCEEEEE
Confidence 999999643 234445443
No 62
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=92.15 E-value=0.74 Score=40.58 Aligned_cols=76 Identities=20% Similarity=0.247 Sum_probs=53.6
Q ss_pred cceEEEecCcEEEEEEEccCCCceeEEEEec--c----cceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceE
Q psy16562 266 MHFFKVQRDKRYLMRIIGGSCLACPLIFTIE--K----HQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLY 339 (445)
Q Consensus 266 ~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~--g----h~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y 339 (445)
...+.++.|+++|+-+.|.+... +.|.+. + |.-..+.+| ..+-.....+.|.||++-.+++.+.+ +|.|
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el~--hef~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s~elvv~ft~-~g~y 136 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGELK--HEFTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKSGELVVVFTG-AGKY 136 (158)
T ss_pred CCcccccCCcEEeeeecCcccce--EEEeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCcEEEEEEecC-CccE
Confidence 44789999999999999999654 444444 1 211122223 11223457899999999999999987 7999
Q ss_pred EEEEEec
Q psy16562 340 WMQAKTL 346 (445)
Q Consensus 340 ~~~~~~~ 346 (445)
.+.|...
T Consensus 137 e~~C~iP 143 (158)
T COG4454 137 EFACNIP 143 (158)
T ss_pred EEEecCC
Confidence 9988654
No 63
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=92.10 E-value=1.7 Score=37.00 Aligned_cols=61 Identities=13% Similarity=0.249 Sum_probs=47.2
Q ss_pred ceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEec
Q psy16562 267 HFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTL 346 (445)
Q Consensus 267 ~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~ 346 (445)
..+.++.|+.++|++.+... .+.|+|...++. +.+-||+.-.+.+++++ +|.|+++|.-.
T Consensus 46 ~~l~lp~g~~v~~~ltS~DV---iHsf~ip~~~~k----------------~d~~PG~~~~~~~~~~~-~G~y~~~C~e~ 105 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSEDV---IHSFWIPELGIK----------------MDAIPGRTNSVTFTPDK-PGTYYGQCAEY 105 (120)
T ss_dssp SEEEEETTSEEEEEEEESSS----EEEEETTCTEE----------------EEEBTTCEEEEEEEESS-SEEEEEEE-SS
T ss_pred ceecccccceEeEEEEcCCc---cccccccccCcc----------------cccccccceeeeeeecc-CCcEEEcCccc
Confidence 47999999999999999764 356667655443 34578888889999987 89999999877
Q ss_pred C
Q psy16562 347 C 347 (445)
Q Consensus 347 ~ 347 (445)
|
T Consensus 106 C 106 (120)
T PF00116_consen 106 C 106 (120)
T ss_dssp S
T ss_pred c
Confidence 6
No 64
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=90.74 E-value=1.6 Score=37.01 Aligned_cols=72 Identities=14% Similarity=0.244 Sum_probs=49.3
Q ss_pred CCeEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecCCCcceEEeccc--c-h
Q psy16562 109 GPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV--G-L 185 (445)
Q Consensus 109 GPtI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~~~GT~wYH~H~--~-~ 185 (445)
.+.|.+..|++|++.+++..- - ||...+.. | + +.-+-||..-...|+++++|+|++.|.- | .
T Consensus 45 ~~~l~lp~g~~v~~~ltS~DV--i-----Hsf~ip~~----~---~-k~d~~PG~~~~~~~~~~~~G~y~~~C~e~CG~g 109 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSEDV--I-----HSFWIPEL----G---I-KMDAIPGRTNSVTFTPDKPGTYYGQCAEYCGAG 109 (120)
T ss_dssp SSEEEEETTSEEEEEEEESSS--------EEEEETTC----T---E-EEEEBTTCEEEEEEEESSSEEEEEEE-SSSSTT
T ss_pred cceecccccceEeEEEEcCCc--c-----cccccccc----C---c-ccccccccceeeeeeeccCCcEEEcCccccCcC
Confidence 468999999999999999753 2 45544321 1 1 1236789999999999999999999984 3 2
Q ss_pred hhhcCceeEEEE
Q psy16562 186 QKMDGLEGSMII 197 (445)
Q Consensus 186 q~~~Gl~G~lIV 197 (445)
|. -|.|-++|
T Consensus 110 H~--~M~~~v~V 119 (120)
T PF00116_consen 110 HS--FMPGKVIV 119 (120)
T ss_dssp GG--G-EEEEEE
T ss_pred cC--CCeEEEEE
Confidence 22 25565554
No 65
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=90.33 E-value=2.2 Score=33.66 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=32.3
Q ss_pred EEEEEEccCCCceeEEEEe-cccceE--EEccCCCcce--------eeEecEEEecCCceEEEEEecCCC---CceEEEE
Q psy16562 277 YLMRIIGGSCLACPLIFTI-EKHQLQ--VIASDGTAVE--------PLVVDSVTLFPGDRVDVIIHTNQS---NNLYWMQ 342 (445)
Q Consensus 277 ~rlRliN~~~~~~~~~~~i-~gh~~~--via~DG~~v~--------P~~~~~~~I~pGeR~dv~v~~~~~---~G~y~~~ 342 (445)
+.|.+.|.+... +.|.+ .|+.+. |...+|..+- ........|.|||...+..+.+.. +|+|.+.
T Consensus 4 ~~l~v~N~s~~~--v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 4 FTLTVTNNSDEP--VTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EEEEEEE-SSS---EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EEEEEEeCCCCe--EEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 455666666542 33333 344332 2333454431 123467899999999999988764 6999875
Q ss_pred E
Q psy16562 343 A 343 (445)
Q Consensus 343 ~ 343 (445)
+
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 4
No 66
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=89.41 E-value=1.7 Score=36.79 Aligned_cols=74 Identities=8% Similarity=0.117 Sum_probs=41.8
Q ss_pred ccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEE
Q psy16562 265 PMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAK 344 (445)
Q Consensus 265 p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~ 344 (445)
....|+|++|++|+|...+.+ +.... +.+. .-|| .+.+...+|+.|++.| ++ +|+|-|.|.
T Consensus 13 ~P~~v~V~~GdTV~f~n~d~~---Hnv~~-~~~~-----~p~g-------~~~~~s~~g~~~~~tF--~~-~G~Y~Y~C~ 73 (116)
T TIGR02375 13 EPAYIRAAPGDTVTFVPTDKG---HNVET-IKGM-----IPEG-------AEAFKSKINEEYTVTV--TE-EGVYGVKCT 73 (116)
T ss_pred eCCEEEECCCCEEEEEECCCC---eeEEE-ccCC-----CcCC-------cccccCCCCCEEEEEe--CC-CEEEEEEcC
Confidence 346899999999999887753 21110 1110 0022 1223334677776665 44 799999997
Q ss_pred ec-CCCceeeEEEEEc
Q psy16562 345 TL-CDSITAEAVLQYE 359 (445)
Q Consensus 345 ~~-~~~~~~~ail~y~ 359 (445)
.. ..++. +.|.+.
T Consensus 74 pH~~~GM~--G~V~Vg 87 (116)
T TIGR02375 74 PHYGMGMV--ALIQVG 87 (116)
T ss_pred CCccCCCE--EEEEEC
Confidence 65 33343 444443
No 67
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=89.29 E-value=2.1 Score=36.85 Aligned_cols=70 Identities=9% Similarity=0.009 Sum_probs=44.5
Q ss_pred cceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEe
Q psy16562 266 MHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKT 345 (445)
Q Consensus 266 ~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~ 345 (445)
...++|++|++|+| +|..... ++. .+.++. .|.....+.-.+++.|.+.|+. +|.|.|.|..
T Consensus 53 PA~v~v~pGDTVtw--~~~d~~~--Hnv---------~~~~~~--~~~g~~~~~~~~~~s~~~Tfe~---~G~Y~Y~C~P 114 (128)
T COG3794 53 PAEVTVKPGDTVTW--VNTDSVG--HNV---------TAVGGM--DPEGSGTLKAGINESFTHTFET---PGEYTYYCTP 114 (128)
T ss_pred CcEEEECCCCEEEE--EECCCCC--ceE---------EEeCCC--CcccccccccCCCcceEEEecc---cceEEEEecc
Confidence 45899999999877 5555432 222 222221 2344566666777888887765 7999999977
Q ss_pred c-CCCceee
Q psy16562 346 L-CDSITAE 353 (445)
Q Consensus 346 ~-~~~~~~~ 353 (445)
. ..++.+.
T Consensus 115 H~~~gM~G~ 123 (128)
T COG3794 115 HPGMGMKGK 123 (128)
T ss_pred CCCCCcEEE
Confidence 5 3444444
No 68
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=88.55 E-value=1.4 Score=34.58 Aligned_cols=64 Identities=8% Similarity=0.041 Sum_probs=38.6
Q ss_pred cceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEe
Q psy16562 266 MHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKT 345 (445)
Q Consensus 266 ~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~ 345 (445)
.+.|++++|+++.| .|.... ++++.+... .++ ........+.+|+.|.+.+ ++ +|.|-|+|..
T Consensus 10 P~~i~v~~GdtVt~--~N~d~~--~Hnv~~~~g------~~~----~~~~~~~~~~~g~~~~~tf--~~-~G~y~y~C~~ 72 (83)
T TIGR02657 10 TPELHVKVGDTVTW--INREAM--PHNVHFVAG------VLG----EAALKGPMMKKEQAYSLTF--TE-AGTYDYHCTP 72 (83)
T ss_pred CCEEEECCCCEEEE--EECCCC--CccEEecCC------CCc----cccccccccCCCCEEEEEC--CC-CEEEEEEcCC
Confidence 46899999999987 466543 233222110 111 1111223468899999766 34 7999999865
Q ss_pred c
Q psy16562 346 L 346 (445)
Q Consensus 346 ~ 346 (445)
.
T Consensus 73 H 73 (83)
T TIGR02657 73 H 73 (83)
T ss_pred C
Confidence 3
No 69
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=87.98 E-value=3.7 Score=34.62 Aligned_cols=73 Identities=7% Similarity=0.009 Sum_probs=43.4
Q ss_pred cccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEE
Q psy16562 264 VPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQA 343 (445)
Q Consensus 264 ~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~ 343 (445)
+....|+|++|++|+|.--..+. ++.+. +.++.. .....+.+.+|++|++.|+ + +|.|-|+|
T Consensus 39 F~P~~ltV~~GdTVtw~~~~d~~---~HnV~---------s~~~~~---f~s~~~~~~~G~t~s~Tf~--~-~G~Y~Y~C 100 (115)
T TIGR03102 39 FDPPAIRVDPGTTVVWEWTGEGG---GHNVV---------SDGDGD---LDESERVSEEGTTYEHTFE--E-PGIYLYVC 100 (115)
T ss_pred EeCCEEEECCCCEEEEEECCCCC---CEEEE---------ECCCCC---ccccccccCCCCEEEEEec--C-CcEEEEEc
Confidence 33468999999999975433221 22322 222211 1123345678999999884 3 79999999
Q ss_pred Eec-CCCceeeE
Q psy16562 344 KTL-CDSITAEA 354 (445)
Q Consensus 344 ~~~-~~~~~~~a 354 (445)
... ..++.+..
T Consensus 101 ~pH~~~gM~G~I 112 (115)
T TIGR03102 101 VPHEALGMKGAV 112 (115)
T ss_pred cCCCCCCCEEEE
Confidence 765 23444443
No 70
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=85.70 E-value=5.4 Score=34.03 Aligned_cols=86 Identities=17% Similarity=0.134 Sum_probs=52.4
Q ss_pred CCeEEEEcC-CEEEEEEEecCCCCCceEeeCCcccCCCCCCC---------C-----CC----cc--cccCCCCCCceEE
Q psy16562 109 GPSIQVCKG-DTIIVDVKNHMIDREVTLHWHGVYQKVTPWMD---------G-----VP----MV--TQCPIPSSTTFRY 167 (445)
Q Consensus 109 GPtI~v~~G-D~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~D---------G-----vp----~~--tq~pI~pG~~~~Y 167 (445)
-..|.|..+ ..|.|+|.|... .+-..--|.+-.....-++ | +| .+ .-.-|.||++-+.
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~-lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~sv 93 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGK-LPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSV 93 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCc-CchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEE
Confidence 357888874 789999999743 2222222322111100011 1 11 11 1123789999999
Q ss_pred EEecC--CCcc-eEEecccchhhhcCceeEEE
Q psy16562 168 KFPAM--PSGT-FFYHSHVGLQKMDGLEGSMI 196 (445)
Q Consensus 168 ~f~~~--~~GT-~wYH~H~~~q~~~Gl~G~lI 196 (445)
.|+++ ++|+ |-|-|-...|.. .|.|.|.
T Consensus 94 tF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 94 TFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 99987 6886 999999876665 6888775
No 71
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=84.69 E-value=9.4 Score=32.59 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=50.1
Q ss_pred ceEEEec-CcEEEEEEEccCCCceeEEEEecccceEEE--------c-------cCCCccee----eEecEEEecCCceE
Q psy16562 267 HFFKVQR-DKRYLMRIIGGSCLACPLIFTIEKHQLQVI--------A-------SDGTAVEP----LVVDSVTLFPGDRV 326 (445)
Q Consensus 267 ~~i~v~~-G~~~rlRliN~~~~~~~~~~~i~gh~~~vi--------a-------~DG~~v~P----~~~~~~~I~pGeR~ 326 (445)
..|+|++ ++.+.+.|.|.+... -. .=+|.+-+. + .|-.++++ +...+-.|.+||..
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lp--k~--~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~ 91 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLP--KA--VMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKT 91 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCc--hh--ccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceE
Confidence 4899998 489999999998532 00 123333222 1 24455643 23466789999999
Q ss_pred EEEEecCC-CCc-eEEEEEEec
Q psy16562 327 DVIIHTNQ-SNN-LYWMQAKTL 346 (445)
Q Consensus 327 dv~v~~~~-~~G-~y~~~~~~~ 346 (445)
++.|+++. .+| +|.+.|.-.
T Consensus 92 svtF~~~~l~~g~~Y~f~CSFP 113 (125)
T TIGR02695 92 SVTFDVSKLSAGEDYTFFCSFP 113 (125)
T ss_pred EEEEECCCCCCCCcceEEEcCC
Confidence 99999874 356 599888543
No 72
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=83.51 E-value=10 Score=34.52 Aligned_cols=77 Identities=9% Similarity=0.091 Sum_probs=50.1
Q ss_pred ceEEEecCcEEEEEEEccCCCceeEEEEe--ccc---ceEEEccCCCcce-eeEecE----EEecCCceEEEEEecCCCC
Q psy16562 267 HFFKVQRDKRYLMRIIGGSCLACPLIFTI--EKH---QLQVIASDGTAVE-PLVVDS----VTLFPGDRVDVIIHTNQSN 336 (445)
Q Consensus 267 ~~i~v~~G~~~rlRliN~~~~~~~~~~~i--~gh---~~~via~DG~~v~-P~~~~~----~~I~pGeR~dv~v~~~~~~ 336 (445)
++|-+..|-++.+.++|..... +++-| .+- .--.++.||..+. +-.... --|.+|++....++.-+ +
T Consensus 85 mtIyiPaGw~V~V~f~N~e~~p--Hnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~~~-~ 161 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNYESLP--HNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWNDTS-A 161 (195)
T ss_pred eEEEEeCCCEEEEEEEcCCCCC--ccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEeccCC-C
Confidence 6899999999999999999653 44433 111 1122455775542 211211 23568899887777665 8
Q ss_pred ceEEEEEEec
Q psy16562 337 NLYWMQAKTL 346 (445)
Q Consensus 337 G~y~~~~~~~ 346 (445)
|.||+.|.-.
T Consensus 162 G~YwlvCgip 171 (195)
T TIGR03094 162 GKYWLVCGIT 171 (195)
T ss_pred eeEEEEcccC
Confidence 9999998554
No 73
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=82.66 E-value=4.4 Score=35.82 Aligned_cols=88 Identities=13% Similarity=0.117 Sum_probs=64.2
Q ss_pred CCCCCeEEEEcCCEEEEEEEecCCCCCceEeeCCcccC-----------CCCCCCCCCcccccCCCCCCceEEEEecCCC
Q psy16562 106 QLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQK-----------VTPWMDGVPMVTQCPIPSSTTFRYKFPAMPS 174 (445)
Q Consensus 106 ~~PGPtI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~-----------~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~~~ 174 (445)
.|++-.++++.|.+++..+.|... ..|=-.+.+. ..+.|++-.. .---+.||+|-+..|..+.+
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~e----l~hef~~~~~~~~~~~~~~~~~~~Dme~d~~-~~v~L~PG~s~elvv~ft~~ 133 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGE----LKHEFTMDAPDKNLEHVTHMILADDMEHDDP-NTVTLAPGKSGELVVVFTGA 133 (158)
T ss_pred ccCCCcccccCCcEEeeeecCccc----ceEEEeccCccccchhHHHhhhCCccccCCc-ceeEeCCCCcEEEEEEecCC
Confidence 467788999999999988888754 2232222211 1112333211 11248999999999999999
Q ss_pred cceEEecccchhhhcCceeEEEEe
Q psy16562 175 GTFFYHSHVGLQKMDGLEGSMIIR 198 (445)
Q Consensus 175 GT~wYH~H~~~q~~~Gl~G~lIV~ 198 (445)
|.|-.-|-...|+..||.|-|.|.
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeC
Confidence 999999999999999999999885
No 74
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=78.83 E-value=17 Score=37.18 Aligned_cols=80 Identities=20% Similarity=0.344 Sum_probs=54.4
Q ss_pred ECCCCCCCeEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCcc--cccCCCCCCceEEEEecCCCcceEEe
Q psy16562 103 INRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMV--TQCPIPSSTTFRYKFPAMPSGTFFYH 180 (445)
Q Consensus 103 ~Ng~~PGPtI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~~--tq~pI~pG~~~~Y~f~~~~~GT~wYH 180 (445)
=++.+--..+.|..|+ +++.|+|... .++. |-= .+|+ .+ -.-.|.||.+..+.+++ .+|||-|+
T Consensus 37 ~d~~c~p~~~tVpAG~-~~f~V~N~~~-~~~E--fe~--------~~~~-~vv~e~EnIaPG~s~~l~~~L-~pGtY~~~ 102 (375)
T PRK10378 37 NDKQCEPMTLTVNAGK-TQFIIQNHSQ-KALE--WEI--------LKGV-MVVEERENIAPGFSQKMTANL-QPGEYDMT 102 (375)
T ss_pred ECCccccCceeeCCCC-EEEEEEeCCC-Ccce--EEe--------eccc-cccccccccCCCCceEEEEec-CCceEEee
Confidence 3556766799999996 8999999975 3322 210 0111 00 11258999999887776 79999999
Q ss_pred cccchhhhcCceeEEEEeCC
Q psy16562 181 SHVGLQKMDGLEGSMIIRTP 200 (445)
Q Consensus 181 ~H~~~q~~~Gl~G~lIV~~~ 200 (445)
| +.+ ..+.|.|+|..+
T Consensus 103 C--~~~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 103 C--GLL--TNPKGKLIVKGE 118 (375)
T ss_pred c--CcC--CCCCceEEEeCC
Confidence 9 443 335899999865
No 75
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=77.13 E-value=9 Score=35.52 Aligned_cols=61 Identities=13% Similarity=0.297 Sum_probs=44.6
Q ss_pred ceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEec
Q psy16562 267 HFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTL 346 (445)
Q Consensus 267 ~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~ 346 (445)
..+.++.|+.++|++.+.... |+|.+-+.. -+....||..-.+.+++++ +|.|...|.-.
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV~----------Hsf~ip~~~---------~k~da~PG~~~~~~~~~~~-~G~y~~~c~e~ 176 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDVI----------HSFWVPELG---------GKIDAIPGQYNALWFNADE-PGVYYGYCAEL 176 (201)
T ss_pred CEEEEEcCCEEEEEEEeCchh----------hcccccccC---------ceEEecCCcEEEEEEEeCC-CEEEEEEehhh
Confidence 379999999999998875532 333332222 2345678999999999887 79999999776
Q ss_pred C
Q psy16562 347 C 347 (445)
Q Consensus 347 ~ 347 (445)
|
T Consensus 177 c 177 (201)
T TIGR02866 177 C 177 (201)
T ss_pred C
Confidence 5
No 76
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=76.49 E-value=8.4 Score=35.72 Aligned_cols=75 Identities=12% Similarity=0.150 Sum_probs=54.9
Q ss_pred CeEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecCCCcceEEeccc--chhh
Q psy16562 110 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV--GLQK 187 (445)
Q Consensus 110 PtI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~~~GT~wYH~H~--~~q~ 187 (445)
..|.+..|+.|++++++..- + ||...+. . |+ |.-.-||..-+..|+++++|+|...|.- |..-
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV-----~--Hsf~ip~---~-~~----k~da~PG~~~~~~~~~~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDV-----I--HSFWVPE---L-GG----KIDAIPGQYNALWFNADEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCch-----h--hcccccc---c-Cc----eEEecCCcEEEEEEEeCCCEEEEEEehhhCCcCc
Confidence 48999999999999998632 2 6665533 1 11 2235689998999999999999999974 3221
Q ss_pred hcCceeEEEEeCC
Q psy16562 188 MDGLEGSMIIRTP 200 (445)
Q Consensus 188 ~~Gl~G~lIV~~~ 200 (445)
..|.+-++|.++
T Consensus 182 -~~M~~~v~v~~~ 193 (201)
T TIGR02866 182 -SLMLFKVVVVER 193 (201)
T ss_pred -cCCeEEEEEECH
Confidence 468888988765
No 77
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=71.88 E-value=15 Score=35.26 Aligned_cols=77 Identities=9% Similarity=0.002 Sum_probs=55.7
Q ss_pred CeEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecCCCcceEEeccc-chhhh
Q psy16562 110 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV-GLQKM 188 (445)
Q Consensus 110 PtI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~~~GT~wYH~H~-~~q~~ 188 (445)
..|.+..|.+|++.++-..- .||...+... .|--.-||...+..++++++|+|.-+|+- ....-
T Consensus 137 n~l~lPv~~~V~f~ltS~DV-------iHsF~IP~l~--------~k~d~iPG~~~~~~~~~~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 137 NELVLPVGRPVRFKLTSADV-------IHSFWIPQLG--------GKIDAIPGMTTELWLTANKPGTYRGICAEYCGPGH 201 (247)
T ss_pred ceEEEeCCCeEEEEEEechh-------ceeEEecCCC--------ceeeecCCceEEEEEecCCCeEEEEEcHhhcCCCc
Confidence 89999999999999986632 2555543311 11135688899999999999999999984 22223
Q ss_pred cCceeEEEEeCCC
Q psy16562 189 DGLEGSMIIRTPK 201 (445)
Q Consensus 189 ~Gl~G~lIV~~~~ 201 (445)
..|.|.++|.+++
T Consensus 202 ~~M~~~v~vvs~~ 214 (247)
T COG1622 202 SFMRFKVIVVSQE 214 (247)
T ss_pred ccceEEEEEEcHH
Confidence 3688999998763
No 78
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=70.61 E-value=26 Score=33.67 Aligned_cols=61 Identities=11% Similarity=0.213 Sum_probs=46.7
Q ss_pred ceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEec
Q psy16562 267 HFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTL 346 (445)
Q Consensus 267 ~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~ 346 (445)
..|.+..|++|+|++.-+.. .+.|.|.+-+ -++..-||...+..+++++ +|+|..+|...
T Consensus 137 n~l~lPv~~~V~f~ltS~DV---iHsF~IP~l~----------------~k~d~iPG~~~~~~~~~~~-~G~Y~g~Cae~ 196 (247)
T COG1622 137 NELVLPVGRPVRFKLTSADV---IHSFWIPQLG----------------GKIDAIPGMTTELWLTANK-PGTYRGICAEY 196 (247)
T ss_pred ceEEEeCCCeEEEEEEechh---ceeEEecCCC----------------ceeeecCCceEEEEEecCC-CeEEEEEcHhh
Confidence 47999999999999987753 3455553333 3455678899999999988 79999999877
Q ss_pred C
Q psy16562 347 C 347 (445)
Q Consensus 347 ~ 347 (445)
|
T Consensus 197 C 197 (247)
T COG1622 197 C 197 (247)
T ss_pred c
Confidence 5
No 79
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=64.55 E-value=10 Score=39.16 Aligned_cols=77 Identities=23% Similarity=0.202 Sum_probs=49.2
Q ss_pred eEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecCCCcceEEecccc-hhhhc
Q psy16562 111 SIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVG-LQKMD 189 (445)
Q Consensus 111 tI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~~~GT~wYH~H~~-~q~~~ 189 (445)
++.|++||.|.+.++|-.. ..-=.||.-.+. -|+.+ -+.|-++-.|.|.++.+|.+||-|--. ..+-+
T Consensus 559 ef~Vkq~DEVt~l~tnld~---Ved~thgfv~p~----~~v~~----~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~ 627 (637)
T COG4263 559 EFKVKQGDEVTVLTTNLDE---VEDLTHGFVIPN----YGVNM----EVKPQRTASVTFYADKPGVAWYYCSWFCHALHM 627 (637)
T ss_pred EEEEecCcEEEEEecccce---eccccceeeecc----CceEE----EEccCCceEEEEEccCCeeeehhhhhHHHHHHH
Confidence 6778888888888777643 111224444322 23332 378888999999999999999987532 22223
Q ss_pred CceeEEEEe
Q psy16562 190 GLEGSMIIR 198 (445)
Q Consensus 190 Gl~G~lIV~ 198 (445)
=|.|-++|+
T Consensus 628 em~~rmlve 636 (637)
T COG4263 628 EMAGRMLVE 636 (637)
T ss_pred hhccceeec
Confidence 356777775
No 80
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=61.54 E-value=21 Score=30.67 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=32.6
Q ss_pred EEEEEEEccCCCceeEEEEecccceEEEccCCCcce---e-eEecEEEecCCceEEEEE
Q psy16562 276 RYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVE---P-LVVDSVTLFPGDRVDVII 330 (445)
Q Consensus 276 ~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~---P-~~~~~~~I~pGeR~dv~v 330 (445)
.|++||.|.+...+ . +-...+.+...||...+ + +...+=.|.|||.|.|.=
T Consensus 32 ~Y~ItI~N~~~~~v--Q--L~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y~S 86 (127)
T PRK05461 32 AYTITIENLGRVPV--Q--LLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEYTS 86 (127)
T ss_pred EEEEEEEECCCCCE--E--EEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEEeC
Confidence 58899999886532 2 44455566666665332 1 233566799999888753
No 81
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=60.19 E-value=75 Score=24.24 Aligned_cols=64 Identities=16% Similarity=0.268 Sum_probs=28.7
Q ss_pred ecCcE--EEEEEEccCCCc-eeEEEEecccceEEEccCCCcc--eeeEecEEEecCCceEEEEEe--cCC--CCceEEEE
Q psy16562 272 QRDKR--YLMRIIGGSCLA-CPLIFTIEKHQLQVIASDGTAV--EPLVVDSVTLFPGDRVDVIIH--TNQ--SNNLYWMQ 342 (445)
Q Consensus 272 ~~G~~--~rlRliN~~~~~-~~~~~~i~gh~~~via~DG~~v--~P~~~~~~~I~pGeR~dv~v~--~~~--~~G~y~~~ 342 (445)
++|+. +.+.+.|.+... ..+.+++ -.-+|=.+ .|..+. .|.||+...+.|+ .+. .+|+|.+.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l-------~~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSL-------SLPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEE-------E--TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEE-------eCCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEEE
Confidence 34544 457888988542 1233332 22233221 233333 7899987665555 333 47999887
Q ss_pred EE
Q psy16562 343 AK 344 (445)
Q Consensus 343 ~~ 344 (445)
+.
T Consensus 73 ~~ 74 (78)
T PF10633_consen 73 VT 74 (78)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 82
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=60.08 E-value=59 Score=24.22 Aligned_cols=65 Identities=18% Similarity=0.231 Sum_probs=36.3
Q ss_pred ceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEE
Q psy16562 267 HFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAK 344 (445)
Q Consensus 267 ~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~ 344 (445)
..|+++.|+++++.+-+..... . +.+...+|..+....-.. -..+..-.+.+++.+ +|+|.++..
T Consensus 5 y~f~v~ag~~l~i~l~~~~~d~---d-------l~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~~-~GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSGDA---D-------LYLYDSNGNSLASYDDSS--QSGGNDESITFTAPA-AGTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTSSE---E-------EEEEETTSSSCEECCCCT--CETTSEEEEEEEESS-SEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCCCe---E-------EEEEcCCCCchhhheecC--CCCCCccEEEEEcCC-CEEEEEEEE
Confidence 4789999999999987666431 2 445555553321110000 112333444455655 799998864
No 83
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=59.08 E-value=38 Score=28.24 Aligned_cols=49 Identities=12% Similarity=0.290 Sum_probs=29.6
Q ss_pred cEEEEEEEccCCCceeEEEEeccc-ceEEEccCCCcceeeEecEEEecCCceEEEEEec
Q psy16562 275 KRYLMRIIGGSCLACPLIFTIEKH-QLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHT 332 (445)
Q Consensus 275 ~~~rlRliN~~~~~~~~~~~i~gh-~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~ 332 (445)
-.|+++|+|.+.....+.+++.|. ++.+.. ....+.|.||+..++.|..
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~---------~~~~i~v~~g~~~~~~v~v 82 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQG---------PENTITVPPGETREVPVFV 82 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE-E---------S--EEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEEC---------CCcceEECCCCEEEEEEEE
Confidence 368999999998877888887764 344311 1367888999988766653
No 84
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=58.49 E-value=28 Score=35.57 Aligned_cols=76 Identities=22% Similarity=0.213 Sum_probs=47.6
Q ss_pred cceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEe
Q psy16562 266 MHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKT 345 (445)
Q Consensus 266 ~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~ 345 (445)
...++|+.|+ ++|.+.|.+... ..|. ++ +|+.+ ....=.|.||.+..+.+.+ .+|+|-+.|..
T Consensus 43 p~~~tVpAG~-~~f~V~N~~~~~--~Efe-------~~--~~~~v---v~e~EnIaPG~s~~l~~~L--~pGtY~~~C~~ 105 (375)
T PRK10378 43 PMTLTVNAGK-TQFIIQNHSQKA--LEWE-------IL--KGVMV---VEERENIAPGFSQKMTANL--QPGEYDMTCGL 105 (375)
T ss_pred cCceeeCCCC-EEEEEEeCCCCc--ceEE-------ee--ccccc---cccccccCCCCceEEEEec--CCceEEeecCc
Confidence 3578999995 999999999764 2332 22 22211 0012269999988887777 38999999844
Q ss_pred cCCCceeeEEEEEcCC
Q psy16562 346 LCDSITAEAVLQYEGE 361 (445)
Q Consensus 346 ~~~~~~~~ail~y~~~ 361 (445)
.. .. .+.|...|.
T Consensus 106 ~~-~~--~g~l~Vtg~ 118 (375)
T PRK10378 106 LT-NP--KGKLIVKGE 118 (375)
T ss_pred CC-CC--CceEEEeCC
Confidence 21 12 344555553
No 85
>PRK13202 ureB urease subunit beta; Reviewed
Probab=53.48 E-value=47 Score=27.30 Aligned_cols=63 Identities=21% Similarity=0.171 Sum_probs=46.4
Q ss_pred eEEEecC--cEEEEEEEccCCCceeEEEEecccceEEEc--------cCCCcceeeEecEEEecCCceEEEEEec
Q psy16562 268 FFKVQRD--KRYLMRIIGGSCLACPLIFTIEKHQLQVIA--------SDGTAVEPLVVDSVTLFPGDRVDVIIHT 332 (445)
Q Consensus 268 ~i~v~~G--~~~rlRliN~~~~~~~~~~~i~gh~~~via--------~DG~~v~P~~~~~~~I~pGeR~dv~v~~ 332 (445)
.|.+.+| +++.+++.|.+.. ++++.-|-|-+.+-. +=|..+.-...+.+...||+.-+|.+..
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDR--PIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDR--PVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCC--ceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE
Confidence 4788888 4889999999975 677777777666542 2355555344678889999999988764
No 86
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=50.87 E-value=71 Score=29.53 Aligned_cols=60 Identities=12% Similarity=0.277 Sum_probs=43.9
Q ss_pred eEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEecC
Q psy16562 268 FFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTLC 347 (445)
Q Consensus 268 ~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~~ 347 (445)
.+.+..|+.+||++..... .+.|.+...+. +...-||..-.+.+++++ +|.|...|.-.|
T Consensus 117 ~l~lp~g~~v~~~ltS~DV---iHsf~vp~l~~----------------k~d~~PG~~~~~~~~~~~-~G~y~g~C~e~C 176 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSDV---IHSFSVPDLNL----------------KMDAIPGRINHLFFCPDR-HGVFVGYCSELC 176 (194)
T ss_pred eEEEeCCCEEEeeeecCcc---ccceeccccCc----------------eeecCCCceEEEEEEcCC-CEEEEEEeehhh
Confidence 5889999999999987664 23455543332 233458888888888887 799999997775
No 87
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=49.63 E-value=1.3e+02 Score=23.91 Aligned_cols=60 Identities=17% Similarity=0.167 Sum_probs=35.3
Q ss_pred EecCcEE--EEEEEccCCCceeEEEEecc---cceEEEccCCCcceeeEecEEEecCCceEEEEEecC--CCCceEEE
Q psy16562 271 VQRDKRY--LMRIIGGSCLACPLIFTIEK---HQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTN--QSNNLYWM 341 (445)
Q Consensus 271 v~~G~~~--rlRliN~~~~~~~~~~~i~g---h~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~--~~~G~y~~ 341 (445)
+..|++| .+.|.|.+...+.+++.... ..|.+-- ..-.|.||+..++.+.+. +..|.|.-
T Consensus 16 v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~-----------~~g~l~PG~~~~~~V~~~~~~~~g~~~~ 82 (102)
T PF14874_consen 16 VFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEP-----------PSGFLAPGESVELEVTFSPTKPLGDYEG 82 (102)
T ss_pred EccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEEC-----------CCCEECCCCEEEEEEEEEeCCCCceEEE
Confidence 3445555 58999999765444444322 1122221 233599999999888876 33576643
No 88
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=49.19 E-value=39 Score=27.10 Aligned_cols=51 Identities=22% Similarity=0.286 Sum_probs=26.9
Q ss_pred EEEEEEEccCCCceeEEEEecccceEEEccCCCcce---e-eEecEEEecCCceEEEEE
Q psy16562 276 RYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVE---P-LVVDSVTLFPGDRVDVII 330 (445)
Q Consensus 276 ~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~---P-~~~~~~~I~pGeR~dv~v 330 (445)
.|++||.|.+... .. |-...+.+...||...+ + +...+=.|.|||.|.|.=
T Consensus 15 ~Y~I~I~N~~~~~--vq--L~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y~S 69 (90)
T PF04379_consen 15 AYRIRIENHSDES--VQ--LLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEYTS 69 (90)
T ss_dssp EEEEEEEE-SSS---EE--EEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEEE
T ss_pred EEEEEEEECCCCC--EE--EEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEEcC
Confidence 5899999999763 22 33444555555553221 1 112455689999887753
No 89
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=48.62 E-value=78 Score=24.83 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=31.3
Q ss_pred eEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCcc---cccCCCCCCceEEEEecC--C--CcceEE
Q psy16562 111 SIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMV---TQCPIPSSTTFRYKFPAM--P--SGTFFY 179 (445)
Q Consensus 111 tI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~~---tq~pI~pG~~~~Y~f~~~--~--~GT~wY 179 (445)
+|+-.-|.+..+.|.|.-. ...| .|++|-... .+-.|+||++.+|++..+ . +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~~g----~~vw--------rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEG----KEVW--------RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-TT------EEE--------ETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECCCC----CEEE--------EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 5666667777777776533 1112 278887542 334589999999999886 3 788753
No 90
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=46.15 E-value=1.7e+02 Score=24.18 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=10.5
Q ss_pred eEecEEEecCCceEEEEEec
Q psy16562 313 LVVDSVTLFPGDRVDVIIHT 332 (445)
Q Consensus 313 ~~~~~~~I~pGeR~dv~v~~ 332 (445)
.....+.|.+|..|.+.+.-
T Consensus 62 l~~~~i~l~~g~~yTl~~~g 81 (122)
T PF14344_consen 62 LLSTTITLEAGKSYTLFAVG 81 (122)
T ss_pred EEeccEEEcCCCEEEEEEEC
Confidence 33445555555555555543
No 91
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=45.48 E-value=1.5e+02 Score=23.30 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=34.8
Q ss_pred cEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEE
Q psy16562 275 KRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAK 344 (445)
Q Consensus 275 ~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~ 344 (445)
..++|.|.|.+... ..|.+..... . .....++.|.+|++.++.+......|-|-+..+
T Consensus 20 g~l~l~l~N~g~~~--~~~~v~~~~y----~------~~~~~~~~v~ag~~~~~~w~l~~s~gwYDl~v~ 77 (89)
T PF05506_consen 20 GNLRLTLSNPGSAA--VTFTVYDNAY----G------GGGPWTYTVAAGQTVSLTWPLAASGGWYDLTVT 77 (89)
T ss_pred CEEEEEEEeCCCCc--EEEEEEeCCc----C------CCCCEEEEECCCCEEEEEEeecCCCCcEEEEEE
Confidence 48999999999764 3444432110 0 011356777888888877776544455555554
No 92
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=45.25 E-value=1.5e+02 Score=23.40 Aligned_cols=68 Identities=16% Similarity=0.048 Sum_probs=39.2
Q ss_pred EecCcEEEEEEE--ccCCCceeEEEEeccc--ceEEEccCCCcceeeEecEE-EecCCceEEEEEecCCC--CceEEEEE
Q psy16562 271 VQRDKRYLMRII--GGSCLACPLIFTIEKH--QLQVIASDGTAVEPLVVDSV-TLFPGDRVDVIIHTNQS--NNLYWMQA 343 (445)
Q Consensus 271 v~~G~~~rlRli--N~~~~~~~~~~~i~gh--~~~via~DG~~v~P~~~~~~-~I~pGeR~dv~v~~~~~--~G~y~~~~ 343 (445)
-+||+++.||++ +......+ ..++ .+.+..-+|..+. .... .......++..+..++. .|.|.+.+
T Consensus 11 YrPGetV~~~~~~~~~~~~~~~----~~~~~~~v~i~dp~g~~v~---~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~ 83 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDNDFKP----PANSPVTVTIKDPSGNEVF---RWSVNTTNENGIFSGSFQLPDDAPLGTYTIRV 83 (99)
T ss_dssp E-TTSEEEEEEEEEEECTTCSC----ESSEEEEEEEEETTSEEEE---EEEEEETTCTTEEEEEEE--SS---EEEEEEE
T ss_pred cCCCCEEEEEEEEecccccccc----ccCCceEEEEECCCCCEEE---EEEeeeeCCCCEEEEEEECCCCCCCEeEEEEE
Confidence 478999999999 55421101 1222 2555666775442 1222 33567788888887664 59999988
Q ss_pred Ee
Q psy16562 344 KT 345 (445)
Q Consensus 344 ~~ 345 (445)
..
T Consensus 84 ~~ 85 (99)
T PF01835_consen 84 KT 85 (99)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 93
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=44.86 E-value=1.5e+02 Score=23.09 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=37.0
Q ss_pred EEecCcEEE--EEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEE-EecCCceEEEEEecCC-CCceEEEEEEe
Q psy16562 270 KVQRDKRYL--MRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSV-TLFPGDRVDVIIHTNQ-SNNLYWMQAKT 345 (445)
Q Consensus 270 ~v~~G~~~r--lRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~-~I~pGeR~dv~v~~~~-~~G~y~~~~~~ 345 (445)
.+..|+.++ +.|.|.|... .-.+.+. +-.||..+ ....+ .|.||+...+.|.... .+|.|.+.+..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~-~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTAD-AENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS--BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCC-CCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 345566554 6788998653 1222222 23355433 33344 7899999888887543 47999887755
Q ss_pred c
Q psy16562 346 L 346 (445)
Q Consensus 346 ~ 346 (445)
.
T Consensus 84 D 84 (101)
T PF07705_consen 84 D 84 (101)
T ss_dssp S
T ss_pred e
Confidence 3
No 94
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=44.30 E-value=44 Score=33.76 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=18.8
Q ss_pred CCCcccccCCCCCCceEEEEecCCC
Q psy16562 150 GVPMVTQCPIPSSTTFRYKFPAMPS 174 (445)
Q Consensus 150 Gvp~~tq~pI~pG~~~~Y~f~~~~~ 174 (445)
|....-+.||+|||+.+.+.+++.+
T Consensus 331 GL~v~d~~pI~PGETr~v~v~aqdA 355 (399)
T TIGR03079 331 GLEVDDQSAIAPGETVEVKMEAKDA 355 (399)
T ss_pred cceeCCCCCcCCCcceEEEEEEehh
Confidence 4443446689999999999988643
No 95
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=43.39 E-value=81 Score=25.86 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=45.6
Q ss_pred eEEEecC-cEEEEEEEccCCCceeEEEEecccceEEEc--------cCCCcceeeEecEEEecCCceEEEEEec
Q psy16562 268 FFKVQRD-KRYLMRIIGGSCLACPLIFTIEKHQLQVIA--------SDGTAVEPLVVDSVTLFPGDRVDVIIHT 332 (445)
Q Consensus 268 ~i~v~~G-~~~rlRliN~~~~~~~~~~~i~gh~~~via--------~DG~~v~P~~~~~~~I~pGeR~dv~v~~ 332 (445)
.|.+.+| +++.+.+.|.+.. ++++.-|-|-+.+-. +=|..+.-...+.+...||+.-+|.+..
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDR--PIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 83 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTGDR--PIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVA 83 (101)
T ss_pred CEEeCCCCcEEEEEEEeCCCc--ceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 4677777 6778999999975 677776777666542 2355555344678889999999988764
No 96
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=40.50 E-value=73 Score=30.17 Aligned_cols=61 Identities=10% Similarity=0.164 Sum_probs=43.0
Q ss_pred ceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEec
Q psy16562 267 HFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTL 346 (445)
Q Consensus 267 ~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~ 346 (445)
..+.+..|+.+||++.....- |.|.| |.-.-+...-||..-.+.+++++ +|.|...|.-.
T Consensus 139 nel~lP~g~pV~~~ltS~DVi----------HSF~V---------P~l~~K~DaiPG~~n~~~~~~~~-~G~y~g~CaE~ 198 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSVM----------NSFFI---------PQLGSQIYAMAGMQTKLHLIANE-PGVYDGISANY 198 (226)
T ss_pred ceEEEECCCEEEEEEEECchh----------hhhhh---------hhcCCeeecCCCceEEEEEEeCC-CEEEEEEchhh
Confidence 368899999999998876632 23333 22223344558888888899887 79999988766
Q ss_pred C
Q psy16562 347 C 347 (445)
Q Consensus 347 ~ 347 (445)
|
T Consensus 199 C 199 (226)
T TIGR01433 199 S 199 (226)
T ss_pred c
Confidence 5
No 97
>PRK13203 ureB urease subunit beta; Reviewed
Probab=40.44 E-value=93 Score=25.57 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=45.4
Q ss_pred eEEEecC-cEEEEEEEccCCCceeEEEEecccceEEEc--------cCCCcceeeEecEEEecCCceEEEEEec
Q psy16562 268 FFKVQRD-KRYLMRIIGGSCLACPLIFTIEKHQLQVIA--------SDGTAVEPLVVDSVTLFPGDRVDVIIHT 332 (445)
Q Consensus 268 ~i~v~~G-~~~rlRliN~~~~~~~~~~~i~gh~~~via--------~DG~~v~P~~~~~~~I~pGeR~dv~v~~ 332 (445)
.|.+.+| +++.+++.|.+.. ++++.-|-|-+.+-. +=|..+.-...+.+...||+..+|.+..
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDR--PIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 83 (102)
T PRK13203 12 EIELNAGRETVTLTVANTGDR--PIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVP 83 (102)
T ss_pred CEEeCCCCCEEEEEEEeCCCC--ceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 3667776 6778999999975 678777777666642 2355555344678889999999988764
No 98
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=39.53 E-value=1.6e+02 Score=24.04 Aligned_cols=69 Identities=16% Similarity=0.117 Sum_probs=43.0
Q ss_pred EEEEEecCCCCCceEeeCCcccCCCCCCC-CCCcccccCCCCCCceEEEEecCCCcceEEecccchhhhcCceeEEEEeC
Q psy16562 121 IVDVKNHMIDREVTLHWHGVYQKVTPWMD-GVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRT 199 (445)
Q Consensus 121 ~V~v~N~l~~~~tsiHwHG~~~~~~~~~D-Gvp~~tq~pI~pG~~~~Y~f~~~~~GT~wYH~H~~~q~~~Gl~G~lIV~~ 199 (445)
.|.++|.|. ....|..|=-.- .-| |. -.+.||+++...|...--|+-.|.|+... .......-+.|..
T Consensus 2 ~V~I~N~L~-~~~~L~vhC~S~----d~Dlg~-----~~l~~g~~~~~~F~~~~~~~t~f~C~~~~-~~~~~~~~f~vy~ 70 (110)
T PF05938_consen 2 HVVIINNLG-PGKILTVHCKSK----DDDLGW-----HVLKPGQSYSFSFRDNFFGTTLFWCHFRW-PGGKYHHSFDVYR 70 (110)
T ss_pred EEEEEECCC-CCCeEEEEeeCC----CccCCC-----EECCCCCEEEEEEecCcCCceeEEEEEEE-CCccEEEEEEEEe
Confidence 488999995 344444442211 122 32 25899999999998776688888899766 1111356666654
Q ss_pred C
Q psy16562 200 P 200 (445)
Q Consensus 200 ~ 200 (445)
.
T Consensus 71 ~ 71 (110)
T PF05938_consen 71 S 71 (110)
T ss_pred c
Confidence 4
No 99
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.13 E-value=92 Score=29.48 Aligned_cols=61 Identities=10% Similarity=0.224 Sum_probs=43.7
Q ss_pred ceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEec
Q psy16562 267 HFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTL 346 (445)
Q Consensus 267 ~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~ 346 (445)
..+.+..|+.+||++.+... .+.|.+...++. ...-||..-.+.+++++ +|.|+..|.-.
T Consensus 140 n~l~lP~~~~v~~~~ts~DV---iHsf~ip~~~~k----------------~d~~Pg~~~~~~~~~~~-~g~y~~~C~e~ 199 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSADV---IHSWTVPSLGVK----------------VDAIPGRLNQLSFEPKR-PGVFYGQCSEI 199 (228)
T ss_pred CeEEEeeCcEEEEEEEcCcc---ccceeccccCce----------------eECCCCcceeEEEEeCC-CEEEEEECccc
Confidence 36889999999999998653 234444333322 33468888888888877 79999888766
Q ss_pred C
Q psy16562 347 C 347 (445)
Q Consensus 347 ~ 347 (445)
|
T Consensus 200 C 200 (228)
T MTH00140 200 C 200 (228)
T ss_pred c
Confidence 5
No 100
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=38.07 E-value=88 Score=32.73 Aligned_cols=51 Identities=12% Similarity=0.249 Sum_probs=34.4
Q ss_pred cEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecC
Q psy16562 275 KRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTN 333 (445)
Q Consensus 275 ~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~ 333 (445)
-.|++++.|.+...+.+.+++.|. +|..++- ..+.+.+.||+..++.|...
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~-------~~~~~~~-~~~~i~v~~g~~~~~~v~v~ 398 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGL-------PGIKIEG-PGAPIHVKAGEKVKLPVFLR 398 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecC-------CCcEEEc-CCceEEECCCCEEEEEEEEE
Confidence 479999999998777778777663 2222210 01378999999987666543
No 101
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=37.80 E-value=1.6e+02 Score=23.06 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=36.4
Q ss_pred CCCeEEEEc---CCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecC
Q psy16562 108 PGPSIQVCK---GDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAM 172 (445)
Q Consensus 108 PGPtI~v~~---GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~ 172 (445)
+.|.+.++. ...|.|++.|... .+..+....... ..+.+ .+-.|+||++.+..|...
T Consensus 7 ~~~~v~~~~~~~~g~l~l~l~N~g~-~~~~~~v~~~~y-----~~~~~--~~~~v~ag~~~~~~w~l~ 66 (89)
T PF05506_consen 7 YAPEVTARYDPATGNLRLTLSNPGS-AAVTFTVYDNAY-----GGGGP--WTYTVAAGQTVSLTWPLA 66 (89)
T ss_pred CCCEEEEEEECCCCEEEEEEEeCCC-CcEEEEEEeCCc-----CCCCC--EEEEECCCCEEEEEEeec
Confidence 345555542 3589999999965 566666554221 11212 334689999999999873
No 102
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=37.48 E-value=1.1e+02 Score=25.02 Aligned_cols=63 Identities=13% Similarity=0.177 Sum_probs=44.8
Q ss_pred eEEEecC-cEEEEEEEccCCCceeEEEEecccceEEEc--------cCCCcceeeEecEEEecCCceEEEEEec
Q psy16562 268 FFKVQRD-KRYLMRIIGGSCLACPLIFTIEKHQLQVIA--------SDGTAVEPLVVDSVTLFPGDRVDVIIHT 332 (445)
Q Consensus 268 ~i~v~~G-~~~rlRliN~~~~~~~~~~~i~gh~~~via--------~DG~~v~P~~~~~~~I~pGeR~dv~v~~ 332 (445)
.|.+.+| +++.+.+.|.+.. ++++.-|-|-+.+-. +=|..+.-...+.+...||+..+|.+..
T Consensus 12 ~I~lN~gr~~~~l~V~NtGDR--pIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 83 (101)
T cd00407 12 DIELNAGREAVTLKVKNTGDR--PIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVP 83 (101)
T ss_pred CeEeCCCCCEEEEEEEeCCCc--ceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEE
Confidence 4666666 5778999999975 677777777666642 2355555334678888999999988764
No 103
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=36.68 E-value=92 Score=29.20 Aligned_cols=60 Identities=12% Similarity=0.248 Sum_probs=43.1
Q ss_pred eEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEecC
Q psy16562 268 FFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTLC 347 (445)
Q Consensus 268 ~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~~ 347 (445)
.+.+..|+.+||++..+..- +.|.+. .-.-+...-||..-.+.+++++ +|.|+..|.-.|
T Consensus 131 ~l~iP~g~~v~~~ltS~DVi---Hsf~vP----------------~l~~k~daiPG~~~~~~~~~~~-~G~y~g~Cae~C 190 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSADTM---TSFWIP----------------QLGGQKYAMTGMTMNWYLQADQ-VGTYRGRNANFN 190 (217)
T ss_pred cEEEECCCEEEEEEECCchh---hhhhch----------------hhCceeecCCCceEEEEEEeCC-CEEEEEEehhhc
Confidence 58899999999999877642 233332 2223344458888888999887 799999987665
No 104
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=36.49 E-value=40 Score=34.11 Aligned_cols=78 Identities=17% Similarity=0.266 Sum_probs=0.0
Q ss_pred EEEEEEEecCCC-------CCceEeeCCcccCCCC--------CCCCCCcccccCCCCCCceEEEEecCCC---------
Q psy16562 119 TIIVDVKNHMID-------REVTLHWHGVYQKVTP--------WMDGVPMVTQCPIPSSTTFRYKFPAMPS--------- 174 (445)
Q Consensus 119 ~v~V~v~N~l~~-------~~tsiHwHG~~~~~~~--------~~DGvp~~tq~pI~pG~~~~Y~f~~~~~--------- 174 (445)
++.++|+|+... ...+++|-.-...... ..+|.-..-..||+||++.+.+.+++.+
T Consensus 266 ~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~PGETrtl~V~a~dA~WeveRL~~ 345 (381)
T PF04744_consen 266 TMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIAPGETRTLTVEAQDAAWEVERLSD 345 (381)
T ss_dssp EEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-TT-EEEEEEEEE-HHHHHTTGGG
T ss_pred EEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcCCCceEEEEEEeehhHHHHhhhhh
Q ss_pred ----------cceEEecccchhhhcCceeEEE
Q psy16562 175 ----------GTFFYHSHVGLQKMDGLEGSMI 196 (445)
Q Consensus 175 ----------GT~wYH~H~~~q~~~Gl~G~lI 196 (445)
|.+++.+-.+.....-+.|++|
T Consensus 346 l~~D~dsrfgGLLff~d~~G~r~i~~I~gpvI 377 (381)
T PF04744_consen 346 LIYDPDSRFGGLLFFFDASGNRYISEIAGPVI 377 (381)
T ss_dssp GGGSSS-EEEEEEEEEETTS-EEEEEEEEE-E
T ss_pred hhcCcccceeEEEEEEcCCCCEEEEeccCccc
No 105
>PRK13198 ureB urease subunit beta; Reviewed
Probab=35.86 E-value=1.1e+02 Score=26.98 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=45.5
Q ss_pred eEEEecC-cEEEEEEEccCCCceeEEEEecccceEEEc--------cCCCcceeeEecEEEecCCceEEEEEec
Q psy16562 268 FFKVQRD-KRYLMRIIGGSCLACPLIFTIEKHQLQVIA--------SDGTAVEPLVVDSVTLFPGDRVDVIIHT 332 (445)
Q Consensus 268 ~i~v~~G-~~~rlRliN~~~~~~~~~~~i~gh~~~via--------~DG~~v~P~~~~~~~I~pGeR~dv~v~~ 332 (445)
.|.+.+| +++.|++.|.+.. ++++.-|-|-+.+-. +=|..+.-...+.+...||+.-+|.+..
T Consensus 40 ~I~lN~gr~~~~l~V~NtGDR--PIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~ 111 (158)
T PRK13198 40 PITFNENKPVTKVKVRNTGDR--PIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLIP 111 (158)
T ss_pred CeEeCCCCcEEEEEEEeCCCC--ceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEEE
Confidence 4777777 6778999999975 677776777666542 2355555334678888999999888764
No 106
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=34.38 E-value=28 Score=28.52 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=27.3
Q ss_pred EEEEECCCCCCCeEEEEcCCEEEEEEEecCC
Q psy16562 99 AILSINRQLPGPSIQVCKGDTIIVDVKNHMI 129 (445)
Q Consensus 99 ~~~~~Ng~~PGPtI~v~~GD~v~V~v~N~l~ 129 (445)
.-..|||+.-=|.=.|+.||.|.|++.|.+-
T Consensus 34 GrV~vNG~~aKpS~~VK~GD~l~i~~~~~~~ 64 (100)
T COG1188 34 GRVKVNGQRAKPSKEVKVGDILTIRFGNKEF 64 (100)
T ss_pred CeEEECCEEcccccccCCCCEEEEEeCCcEE
Confidence 4467899998999999999999999999864
No 107
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=33.55 E-value=1.1e+02 Score=31.12 Aligned_cols=68 Identities=12% Similarity=0.174 Sum_probs=41.6
Q ss_pred CeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEcc-CCCcce-ee----------
Q psy16562 246 DAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIAS-DGTAVE-PL---------- 313 (445)
Q Consensus 246 ~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~-DG~~v~-P~---------- 313 (445)
...-|||+..+. .+.++.|+.|-|+++..+...- .+|--..+.+ ||+++- |-
T Consensus 88 ~~t~lng~~~~~----------S~~LelG~dYefkv~lkaR~pG------~~hvh~m~Nv~~~GpiiGPg~w~~I~Gs~~ 151 (399)
T TIGR03079 88 LSTKVNGMPVFI----------SGPLEIGRDYEFEVTLQARIPG------RHHMHAMLNVKDAGPIAGPGKWMNITGSWD 151 (399)
T ss_pred eeEEECCEeecc----------eeEeecCCceeEEEEEeeccCC------cccceeEEEeccCCCCcCCceEEEeecchh
Confidence 455689986553 4778999999999999885431 2232222332 666652 21
Q ss_pred -EecEEEecCCceEEEE
Q psy16562 314 -VVDSVTLFPGDRVDVI 329 (445)
Q Consensus 314 -~~~~~~I~pGeR~dv~ 329 (445)
.++-+..--||..|..
T Consensus 152 dFtnpVttLtG~TIDLE 168 (399)
T TIGR03079 152 DFTNPIKDLTGNTIDLE 168 (399)
T ss_pred hcCCcceeccCcEEeee
Confidence 1234556667877755
No 108
>PRK13204 ureB urease subunit beta; Reviewed
Probab=32.48 E-value=1.4e+02 Score=26.43 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=45.4
Q ss_pred eEEEecC-cEEEEEEEccCCCceeEEEEecccceEEEc--------cCCCcceeeEecEEEecCCceEEEEEec
Q psy16562 268 FFKVQRD-KRYLMRIIGGSCLACPLIFTIEKHQLQVIA--------SDGTAVEPLVVDSVTLFPGDRVDVIIHT 332 (445)
Q Consensus 268 ~i~v~~G-~~~rlRliN~~~~~~~~~~~i~gh~~~via--------~DG~~v~P~~~~~~~I~pGeR~dv~v~~ 332 (445)
.|.+.+| +++.|.+.|.+.. ++++.-|-|-+.+-. +=|..+.-...+.+...||+.-+|.+..
T Consensus 35 ~I~lN~gr~~~~l~V~NtGDR--PIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~ 106 (159)
T PRK13204 35 PIEINQGRPRTTLTVRNTGDR--PIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLVP 106 (159)
T ss_pred CeEeCCCCcEEEEEEEeCCCC--ceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEEE
Confidence 4677777 6678999999975 678777777666642 2355555344678888999999888764
No 109
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=32.27 E-value=2.9e+02 Score=23.08 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=39.3
Q ss_pred eEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcc-eeeEecEEEecCCceEEEEEecCCCCc
Q psy16562 268 FFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAV-EPLVVDSVTLFPGDRVDVIIHTNQSNN 337 (445)
Q Consensus 268 ~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v-~P~~~~~~~I~pGeR~dv~v~~~~~~G 337 (445)
.|++.....|+|.+...+. ..+.|++. .|++.++..- .+.....+.+..|+.|.+.|...+..+
T Consensus 51 ~i~~~~~G~y~f~~~~~~~----~~l~Idg~--~vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~~ 115 (136)
T smart00758 51 YLKPPEDGEYTFSITSDDG----ARLWIDGK--LVIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAGT 115 (136)
T ss_pred EEECCCCccEEEEEEcCCc----EEEEECCc--EEEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCCC
Confidence 3666666679999864442 46778875 3444433221 123345688889999998888655433
No 110
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=31.68 E-value=3e+02 Score=23.07 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=40.7
Q ss_pred eEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcc-------eeeEecEEEecCCceEEEEEecCC
Q psy16562 268 FFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAV-------EPLVVDSVTLFPGDRVDVIIHTNQ 334 (445)
Q Consensus 268 ~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v-------~P~~~~~~~I~pGeR~dv~v~~~~ 334 (445)
.|++.....|+|++...+ ...+.|+|..+ +..++..- .+.....+.+..|.+|.+.|...+
T Consensus 53 ~~~~~~~G~y~f~~~~~d----~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD----GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEEESSSEEEEEEEEESS----EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EEecccCceEEEEEEecc----cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 378877789999999444 34677887654 44444322 345567888999999999998644
No 111
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.37 E-value=2.9e+02 Score=25.52 Aligned_cols=74 Identities=9% Similarity=0.006 Sum_probs=49.0
Q ss_pred eEEEEcCCEEEEEEEecCCCCCceEeeCCcccCCCCCCCCCCcccccCCCCCCceEEEEecCCCcceEEeccc--chhhh
Q psy16562 111 SIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV--GLQKM 188 (445)
Q Consensus 111 tI~v~~GD~v~V~v~N~l~~~~tsiHwHG~~~~~~~~~DGvp~~tq~pI~pG~~~~Y~f~~~~~GT~wYH~H~--~~q~~ 188 (445)
.+.+..|.+++++++-..- + |+...+.- ++.+. .-||..-...|+++++|+|.--|.- |..-
T Consensus 117 ~l~lp~g~~v~~~ltS~DV-----i--Hsf~vp~l-------~~k~d-~~PG~~~~~~~~~~~~G~y~g~C~e~CG~~H- 180 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSDV-----I--HSFSVPDL-------NLKMD-AIPGRINHLFFCPDRHGVFVGYCSELCGVGH- 180 (194)
T ss_pred eEEEeCCCEEEeeeecCcc-----c--cceecccc-------Cceee-cCCCceEEEEEEcCCCEEEEEEeehhhCcCc-
Confidence 4888899999999875532 2 44444321 11122 3478888889999999999988873 3221
Q ss_pred cCceeEEEEeCC
Q psy16562 189 DGLEGSMIIRTP 200 (445)
Q Consensus 189 ~Gl~G~lIV~~~ 200 (445)
..|.+-+.|.++
T Consensus 181 ~~M~~~v~v~~~ 192 (194)
T MTH00047 181 SYMPIVIEVVDV 192 (194)
T ss_pred ccCcEEEEEEcC
Confidence 246777777765
No 112
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=31.25 E-value=2e+02 Score=24.31 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=39.5
Q ss_pred cEEEEEEEccCCCceeEEEEecccc-eEEEccCCCcce-e-----eEecEEEecCCceEEEEEecCC
Q psy16562 275 KRYLMRIIGGSCLACPLIFTIEKHQ-LQVIASDGTAVE-P-----LVVDSVTLFPGDRVDVIIHTNQ 334 (445)
Q Consensus 275 ~~~rlRliN~~~~~~~~~~~i~gh~-~~via~DG~~v~-P-----~~~~~~~I~pGeR~dv~v~~~~ 334 (445)
..++|.+.|.+...|. |.|.. +.....||..+. + .....+.|.||++..+.|....
T Consensus 20 ~~~~l~~tN~s~~~C~----l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 20 RHATLTFTNTSDTPCT----LYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred cEEEEEEEECCCCcEE----eccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 3678999999988775 45543 555677887542 1 1345799999999988887654
No 113
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=30.76 E-value=2.2e+02 Score=24.05 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=15.1
Q ss_pred cccCCCCCCceEEEEec
Q psy16562 155 TQCPIPSSTTFRYKFPA 171 (445)
Q Consensus 155 tq~pI~pG~~~~Y~f~~ 171 (445)
..||+.+|+.++|.+..
T Consensus 71 l~CPl~~G~~~~y~~~~ 87 (120)
T cd00918 71 VKCPIKKGQHYDIKYTW 87 (120)
T ss_pred EeCCCcCCcEEEEEEee
Confidence 47999999999999875
No 114
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=30.14 E-value=1.6e+02 Score=27.96 Aligned_cols=60 Identities=10% Similarity=0.198 Sum_probs=42.6
Q ss_pred eEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEecC
Q psy16562 268 FFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTLC 347 (445)
Q Consensus 268 ~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~~ 347 (445)
.+.+..|+.+||++.+... .+.+.+.+.++. ...-||..-.+.+.+++ +|.|+..|.-.|
T Consensus 141 ~lvlP~~~~v~~~~tS~DV---iHsf~vP~~~~k----------------~daiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (228)
T MTH00008 141 RAVLPMQTEIRVLVTAADV---IHSWTVPSLGVK----------------VDAVPGRLNQIGFTITR-PGVFYGQCSEIC 200 (228)
T ss_pred eEEEecCCEEEEEEEeCCc---cccccccccCcc----------------eecCCCceEEEEEEeCC-CEEEEEEChhhc
Confidence 6888999999999998653 234444443333 22357888888888877 799988886665
No 115
>PRK13201 ureB urease subunit beta; Reviewed
Probab=29.24 E-value=1.8e+02 Score=25.07 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=45.3
Q ss_pred eEEEecC-cEEEEEEEccCCCceeEEEEecccceEEEc--------cCCCcceeeEecEEEecCCceEEEEEec
Q psy16562 268 FFKVQRD-KRYLMRIIGGSCLACPLIFTIEKHQLQVIA--------SDGTAVEPLVVDSVTLFPGDRVDVIIHT 332 (445)
Q Consensus 268 ~i~v~~G-~~~rlRliN~~~~~~~~~~~i~gh~~~via--------~DG~~v~P~~~~~~~I~pGeR~dv~v~~ 332 (445)
.|.+.+| +++.|.+.|.+.. ++++.-|-|-+.+-. +=|..+.-...+.+...||+.-+|.+..
T Consensus 12 ~I~lN~gr~~~~l~V~NtGDR--PIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~ 83 (136)
T PRK13201 12 EVEINNHHPETVIEVENTGDR--PIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLVE 83 (136)
T ss_pred CeEeCCCCCEEEEEEEeCCCc--ceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 4677777 6778999999975 778777777666542 2355555334678889999999988764
No 116
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=27.64 E-value=1.6e+02 Score=24.83 Aligned_cols=17 Identities=24% Similarity=0.694 Sum_probs=15.3
Q ss_pred cccCCCCCCceEEEEec
Q psy16562 155 TQCPIPSSTTFRYKFPA 171 (445)
Q Consensus 155 tq~pI~pG~~~~Y~f~~ 171 (445)
+.||+.+|+.++|.+.+
T Consensus 75 ~~CPl~~G~~~~y~~~~ 91 (123)
T cd00916 75 TSCPLSAGEDVTYTLSL 91 (123)
T ss_pred CCCCCcCCcEEEEEEee
Confidence 67999999999999975
No 117
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.74 E-value=1.9e+02 Score=27.44 Aligned_cols=60 Identities=8% Similarity=0.196 Sum_probs=42.3
Q ss_pred eEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEecC
Q psy16562 268 FFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTLC 347 (445)
Q Consensus 268 ~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~~ 347 (445)
.+.+..|+.+||++.-... .+.+.+...++. ...-||..-.+.+.+++ +|.|+..|.-.|
T Consensus 141 ~lvlP~~~~v~~~~tS~DV---iHsf~ip~~~~k----------------~da~PG~~~~~~~~~~~-~G~~~g~C~e~C 200 (230)
T MTH00129 141 RMVVPVESPIRVLVSAEDV---LHSWAVPALGVK----------------MDAVPGRLNQTAFIASR-PGVFYGQCSEIC 200 (230)
T ss_pred eEEEecCcEEEEEEEeCcc---ccceeccccCCc----------------cccCCCceEEEEEEeCC-ceEEEEEChhhc
Confidence 6888999999999876653 234444433322 22358888888888887 799998887665
No 118
>PRK13205 ureB urease subunit beta; Reviewed
Probab=26.72 E-value=2e+02 Score=25.42 Aligned_cols=63 Identities=19% Similarity=0.130 Sum_probs=46.1
Q ss_pred eEEEecC-cEEEEEEEccCCCceeEEEEecccceEEEc--------cCCCcceeeEecEEEecCCceEEEEEec
Q psy16562 268 FFKVQRD-KRYLMRIIGGSCLACPLIFTIEKHQLQVIA--------SDGTAVEPLVVDSVTLFPGDRVDVIIHT 332 (445)
Q Consensus 268 ~i~v~~G-~~~rlRliN~~~~~~~~~~~i~gh~~~via--------~DG~~v~P~~~~~~~I~pGeR~dv~v~~ 332 (445)
.|.+.+| +++.|.+.|.+.. ++++.-|-|-+.+-. +=|..+.-...+.+...||+.-+|.+..
T Consensus 12 ~IelN~GR~~i~L~V~NtGDR--PIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV~ 83 (162)
T PRK13205 12 SLTGNVGREAKTIEIINTGDR--PVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLVA 83 (162)
T ss_pred CeEeCCCCcEEEEEEEeCCCC--ceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 4677777 6778999999975 778777777666542 2355565344678899999999998864
No 119
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=26.45 E-value=3.1e+02 Score=24.63 Aligned_cols=60 Identities=8% Similarity=0.209 Sum_probs=40.7
Q ss_pred eEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEecC
Q psy16562 268 FFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTLC 347 (445)
Q Consensus 268 ~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~~ 347 (445)
.+.+..|..+||++.-+.. .+.|+|...++.+ -.-||..-.+.+.++. +|.|+..|.-.|
T Consensus 74 ~LvLP~g~~Vr~~lTS~DV---IHSF~VP~lgvK~----------------DavPGr~n~l~~~~~~-~G~y~gqCsElC 133 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATDV---IHSWSVPSLGIKA----------------DAIPGRLHKINTFILR-EGVFYGQCSEMC 133 (162)
T ss_pred CEEEeCCCEEEEEEEeCcc---ceeeeccccCcee----------------eccCCceEEEEEecCC-CeEEEEEcchhc
Confidence 4778889999998876653 2345554444333 2346666667777766 799999997775
No 120
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=26.21 E-value=2e+02 Score=27.26 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=41.6
Q ss_pred eEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEecC
Q psy16562 268 FFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTLC 347 (445)
Q Consensus 268 ~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~~ 347 (445)
.+.+..|+.+||++.-... .+.+.+...+.. ...-||..-.+.+.+++ +|.|+..|.-.|
T Consensus 141 ~lvlP~~~~v~~~~tS~DV---iHsf~ip~lg~k----------------~daiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (227)
T MTH00098 141 RVVLPMEMPIRMLISSEDV---LHSWAVPSLGLK----------------TDAIPGRLNQTTLMSTR-PGLYYGQCSEIC 200 (227)
T ss_pred eEEecCCCEEEEEEEECcc---cccccccccccc----------------eecCCCceEEEEEecCC-cEEEEEECcccc
Confidence 6788999999998886653 234444333332 23357888888888877 799998887665
No 121
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=25.71 E-value=2.5e+02 Score=24.65 Aligned_cols=53 Identities=25% Similarity=0.412 Sum_probs=37.4
Q ss_pred cEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEe-------cEEEecCCceE-EEEEec
Q psy16562 275 KRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVV-------DSVTLFPGDRV-DVIIHT 332 (445)
Q Consensus 275 ~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~-------~~~~I~pGeR~-dv~v~~ 332 (445)
.+|-|-+-|.|... +.++.-.++|+ +||+.+.|..+ +.+.|.|||-- .+.+..
T Consensus 70 ~t~t~yiKNtG~~~----~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~ 130 (154)
T COG3354 70 YTYTFYIKNTGSDS----IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNE 130 (154)
T ss_pred eEEEEEEecCCCcc----cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEecc
Confidence 57999999999863 33677777776 69987765433 45668899987 454443
No 122
>PF05775 AfaD: Enterobacteria AfaD invasin protein; InterPro: IPR008394 This family consists of several AfaD and related proteins from Escherichia coli and Salmonella bacteria. The afa gene clusters encode an afimbrial adhesive sheath produced by E. coli. The adhesive sheath is composed of two proteins, AfaD and AfaE, which are independently exposed at the bacterial cell surface. AfaE is required for bacterial adhesion to HeLa cells and AfaD for the uptake of adherent bacteria into these cells [].; GO: 0009289 pilus; PDB: 3UIZ_F 3UIY_A 2AXW_A 2IXQ_A 2FVN_A.
Probab=24.14 E-value=2.7e+02 Score=23.32 Aligned_cols=53 Identities=17% Similarity=0.067 Sum_probs=26.8
Q ss_pred eeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCC--CCceEEEEEEe
Q psy16562 289 CPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQ--SNNLYWMQAKT 345 (445)
Q Consensus 289 ~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~--~~G~y~~~~~~ 345 (445)
+.+.+.|.+.++.--..+|..- +-.-...-.+-||++++-+| ++++|.+....
T Consensus 54 h~LrVRlgg~gW~pd~~~g~~G----iv~~~~e~~~~Fdvv~DGnQ~v~~d~Y~~sv~g 108 (111)
T PF05775_consen 54 HELRVRLGGEGWQPDVREGGQG----IVSHGGEEQAIFDVVADGNQRVPPDEYVLSVSG 108 (111)
T ss_dssp -EEEEEEETTT-EE--STTSSS----EEEETTSSEEEEEEEECSSSE--SCEEEEEEEE
T ss_pred ceEEEEeCCCCcccccccCceE----EEEeccccccEEEEEEeCCEecCCCEEEEEEEE
Confidence 4566667766666655444211 00000112345788887777 47889887654
No 123
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=23.88 E-value=53 Score=25.81 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=24.9
Q ss_pred eEEEEEEECCCCCCCeEEEEcCCEEEEE
Q psy16562 96 FERAILSINRQLPGPSIQVCKGDTIIVD 123 (445)
Q Consensus 96 ~~~~~~~~Ng~~PGPtI~v~~GD~v~V~ 123 (445)
.+..++.+||+.-++.=+++.||+|.|.
T Consensus 47 tEV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 47 TEVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HHeEEEEECCEECCCcccCCCCCEEEEE
Confidence 3678899999999999999999999874
No 124
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=23.47 E-value=38 Score=26.53 Aligned_cols=18 Identities=50% Similarity=0.875 Sum_probs=13.9
Q ss_pred eeccccCChhhHhhcCCC
Q psy16562 8 RVGREDADPDLMKYLQPN 25 (445)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~ 25 (445)
-||.|..||+||++|--.
T Consensus 17 ~vGD~~sDP~LM~~LgA~ 34 (83)
T PF06399_consen 17 IVGDESSDPELMAYLGAK 34 (83)
T ss_dssp EEEETTS-HHHHHHHT-E
T ss_pred ccCCccCCHHHHHHhcCc
Confidence 489999999999999743
No 125
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=22.57 E-value=2.1e+02 Score=22.22 Aligned_cols=73 Identities=4% Similarity=0.033 Sum_probs=37.5
Q ss_pred EEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEe
Q psy16562 269 FKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKT 345 (445)
Q Consensus 269 i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~ 345 (445)
|+++.|+.+.++|--....-....++.+...+.++..+ +.+...-.. .++.+-...+.|++.+ +|+..+....
T Consensus 1 I~v~~g~~~~I~L~~npstGY~W~~~~~~~~l~l~~~~--~~~~~~~~~-~vG~~g~~~f~f~a~~-~G~~~i~~~y 73 (92)
T PF09394_consen 1 ITVKVGDTFEIELPENPSTGYSWSLSSDSDGLQLVSEE--YIPDNSPSG-LVGAPGTRTFTFKALK-PGTTTIKFEY 73 (92)
T ss_dssp -EEETTSEEEEEEEEBCCGTBEEEECTSTTTEEEEEEE--EEESSTSST-SSTSSEEEEEEEEESS-SEEEEEEEEE
T ss_pred CeecCCCEEEEEECCCCCCCeEEEEecCCCeEEEcCCc--EEeCCCCcC-CCCCCcEEEEEEEEec-CeeEEEEEEE
Confidence 57888999998888766543233333333445544321 111000001 3344444457777776 6777665543
No 126
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=22.30 E-value=4.3e+02 Score=21.44 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=31.8
Q ss_pred EEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEe--------cEEEecCCceEEEEE--ecCCCCceEEEEE
Q psy16562 277 YLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVV--------DSVTLFPGDRVDVII--HTNQSNNLYWMQA 343 (445)
Q Consensus 277 ~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~--------~~~~I~pGeR~dv~v--~~~~~~G~y~~~~ 343 (445)
+.+++.|.+... +. +....|.++..||...++... ..-.|.||+.....+ .+++....|.+..
T Consensus 40 v~v~v~N~~~~~--~~--~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~vp~~~~~~~l~~ 112 (123)
T PF11611_consen 40 VDVTVKNNGDEP--LD--FSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEVPKDDKPYTLEY 112 (123)
T ss_dssp EEEEEEE-SSS---EE--EEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEESTT-GG-EEEE
T ss_pred EEEEEEECCCCc--EE--ecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEECCCCccEEEEE
Confidence 467899988763 34 445589998888887764322 256899999877544 4444333344433
No 127
>KOG4387|consensus
Probab=22.17 E-value=35 Score=30.90 Aligned_cols=28 Identities=21% Similarity=0.459 Sum_probs=23.5
Q ss_pred EEcCCEEEEEEEecCCCCCceEeeCCccc
Q psy16562 114 VCKGDTIIVDVKNHMIDREVTLHWHGVYQ 142 (445)
Q Consensus 114 v~~GD~v~V~v~N~l~~~~tsiHwHG~~~ 142 (445)
.+-++++.+++.|++. ..+++||||+--
T Consensus 73 ~n~~~~~~~d~~~rlt-~~~s~~W~~vl~ 100 (191)
T KOG4387|consen 73 GNDRKPGILDFQERLT-VAKSMNWHGVLS 100 (191)
T ss_pred ccCCCCcEEeccchhh-eeeecccceEEe
Confidence 4456789999999998 789999999863
No 128
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=21.57 E-value=2.8e+02 Score=26.17 Aligned_cols=60 Identities=10% Similarity=0.182 Sum_probs=26.4
Q ss_pred EEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceE
Q psy16562 269 FKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLY 339 (445)
Q Consensus 269 i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y 339 (445)
|.-+-|.++.++|-|+.... . ++-..--.|..||....-...+.+.|.|||++.+. ||.|
T Consensus 112 IINRGGG~L~i~l~~s~~~~-~----~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~------Pg~y 171 (225)
T PF07385_consen 112 IINRGGGNLVIELYNSDPDG-E----LDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLP------PGIY 171 (225)
T ss_dssp EEEEEES-EEEEEEEB--TT-S----SB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-------TTEE
T ss_pred eeecCCceEEEEEEeccCCC-c----cccCCCeEEecCCcEEEecCCceEEeCCCCeEeeC------CCCe
Confidence 33444567777777765211 0 11111122334554332122478999999998754 6765
No 129
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.57 E-value=2.5e+02 Score=26.65 Aligned_cols=60 Identities=10% Similarity=0.244 Sum_probs=42.1
Q ss_pred eEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEecC
Q psy16562 268 FFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTLC 347 (445)
Q Consensus 268 ~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~~ 347 (445)
.+.+..|+.+|+++..+.. .+.+.+...++.+ ..-||..-.+.+.+++ +|.|+..|.-.|
T Consensus 145 ~lvlP~~~~v~~~itS~DV---iHsf~vp~lg~k~----------------daiPG~~~~~~~~~~~-~G~y~g~Cse~C 204 (234)
T MTH00051 145 RLIVPIQTQVRVLVTAADV---LHSFAVPSLSVKI----------------DAVPGRLNQTSFFIKR-PGVFYGQCSEIC 204 (234)
T ss_pred EEEEecCcEEEEEEEeCch---hccccccccCcee----------------EccCCceEeEEEEeCC-CEEEEEEChhhc
Confidence 6888999999999988753 2344444433332 2357777778888877 799988886665
No 130
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=21.12 E-value=3.5e+02 Score=19.98 Aligned_cols=47 Identities=19% Similarity=0.365 Sum_probs=24.7
Q ss_pred EEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEE
Q psy16562 269 FKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDV 328 (445)
Q Consensus 269 i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv 328 (445)
+++.+|+.++||..... .+.+..-.+.+.. +|. .+-..|.||+++.+
T Consensus 2 ~~L~~g~~~~lr~~~~~------~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~l 48 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ------RLRVESGRVWLTR-EGD------PDDYWLQAGDSLRL 48 (63)
T ss_pred EEeCCCceEEeEcCCCc------EEEEccccEEEEC-CCC------CCCEEECCCCEEEe
Confidence 56667777777754432 2334444444433 331 23455666666553
No 131
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.86 E-value=3.8e+02 Score=25.30 Aligned_cols=60 Identities=15% Similarity=0.267 Sum_probs=41.9
Q ss_pred eEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEecC
Q psy16562 268 FFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTLC 347 (445)
Q Consensus 268 ~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~~ 347 (445)
.+.+..|+.+||++..+.. .+.+.+...++. .-.-||..-.+.+++++ +|.|...|.-.|
T Consensus 141 ~l~lP~~~~v~~~~tS~DV---iHsf~vp~l~~k----------------~davPG~~~~~~~~~~~-~G~y~g~Cse~C 200 (227)
T MTH00154 141 RLVLPMNTQIRILITAADV---IHSWTVPSLGVK----------------VDAVPGRLNQLNFLINR-PGLFFGQCSEIC 200 (227)
T ss_pred eEEEecCCEEEEEEEcCch---hhheeccccCCe----------------eecCCCceEEEEEEEcC-ceEEEEEeechh
Confidence 6889999999998876653 234444433333 23347777778888877 799998887665
No 132
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.78 E-value=3.4e+02 Score=25.75 Aligned_cols=61 Identities=16% Similarity=0.271 Sum_probs=42.0
Q ss_pred ceEEEecCcEEEEEEEccCCCceeEEEEecccceEEEccCCCcceeeEecEEEecCCceEEEEEecCCCCceEEEEEEec
Q psy16562 267 HFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTL 346 (445)
Q Consensus 267 ~~i~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~~~I~pGeR~dv~v~~~~~~G~y~~~~~~~ 346 (445)
..+.+..|+.+||++.-+.. .+.+.+...+.. ...-||..-.+.+.+++ +|.|+..|.-.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV---iHsf~iP~lg~k----------------~daiPG~~~~~~~~~~~-~G~~~g~Cse~ 199 (230)
T MTH00185 140 HRMVVPMESPIRVLITAEDV---LHSWTVPALGVK----------------MDAVPGRLNQATFIISR-PGLYYGQCSEI 199 (230)
T ss_pred CeEEEecCCEEEEEEEcCcc---cccccccccCce----------------eEecCCceEEEEEEeCC-cEEEEEEchhh
Confidence 36888999999999886653 234444443332 23357777778888877 79999888766
Q ss_pred C
Q psy16562 347 C 347 (445)
Q Consensus 347 ~ 347 (445)
|
T Consensus 200 C 200 (230)
T MTH00185 200 C 200 (230)
T ss_pred c
Confidence 5
No 133
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=20.29 E-value=2e+02 Score=30.60 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=35.7
Q ss_pred ceEEEEeeeeccCCCCccCCCCC----CCCCCCCCeEEEccccCCCCCCCCCcccceEEEecCcEEEEEEEccCCC
Q psy16562 216 SHVIIVTDWMHSMTDSKFPGNTY----NDTRIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCL 287 (445)
Q Consensus 216 e~~l~l~D~~~~~~~~~~~~~~~----~~~~~~~~~~lING~~~~~~~~~~~~p~~~i~v~~G~~~rlRliN~~~~ 287 (445)
-+-+++.-|.-.++...|.+-.. ......| .+.-.|.. .|...++.|++|++|+.++..+
T Consensus 168 G~hVI~~vWq~~Dt~~aFY~c~DV~f~~~~~~~p-~w~~~g~i-----------~~~~~l~~Gd~V~~RvFd~~Ge 231 (478)
T PRK13211 168 GYQVILAVWEVGDTANSFYNVIDVNFDGGGGVVP-EWSKVGQI-----------NPSMDLKAGDKVMTRVFDANGE 231 (478)
T ss_pred ccEEEEEEEEecCCcCCceEEEEEEEcCCCCCCC-ccccCccC-----------ccCCCCCCCCEEEEEEecCCCc
Confidence 46678888988776655544321 1111112 12222322 2345789999999999999854
Done!