RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16562
(445 letters)
>gnl|CDD|234193 TIGR03388, ascorbase, L-ascorbate oxidase, plant type. Members of
this protein family are the copper-containing enzyme
L-ascorbate oxidase (EC 1.10.3.3), also called
ascorbase. This family is found in flowering plants, and
shows greater sequence similarity to a family of
laccases (EC 1.10.3.2) from plants than to other known
ascorbate oxidases.
Length = 541
Score = 183 bits (467), Expect = 2e-52
Identities = 99/302 (32%), Positives = 147/302 (48%), Gaps = 32/302 (10%)
Query: 94 DGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM 153
D FE+ ++ IN Q PGP+I+ GDTI+V++ N + V +HWHG+ Q TPW DG
Sbjct: 16 DCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAG 75
Query: 154 VTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFD 213
VTQC I TF Y F GT+FYH H G+Q+ GL GS+I+ P + YD +
Sbjct: 76 VTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAGLYGSLIVDVPDG-EKEPFHYDGE 134
Query: 214 LYSHVIIVTDWMHSMTDSKFPGNTYNDTRI--KPDAILINGQNQ-----NPKDNSPRVPM 266
++++DW H + G + R +P ++LING+ Q K +S +P
Sbjct: 135 ---FNLLLSDWWHKSIHEQEVGLSSKPMRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQ 191
Query: 267 -----------HFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVV 315
V+ K Y +RI + LA L F IE H+L V+ +DG VEP V
Sbjct: 192 CNLKGNEQCAPQILHVEPGKTYRLRIASTTALAA-LNFAIEGHKLTVVEADGNYVEPFTV 250
Query: 316 DSVTLFPGDRVDVIIHTNQ--SNNLYWMQAKTLC---DSITAEAVLQYEGEKLTYVSKRP 370
+ ++ G+ V++ T+Q S N YW+ ++ VL Y S+ P
Sbjct: 251 KDIDIYSGETYSVLLTTDQDPSRN-YWISVGVRGRKPNTPPGLTVLNYYP---NSPSRLP 306
Query: 371 KS 372
+
Sbjct: 307 PT 308
Score = 38.6 bits (90), Expect = 0.006
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 392 FKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLF 444
V+ K Y +RI + LA L F IE H+L V+ +DG VEP V + ++
Sbjct: 205 LHVEPGKTYRLRIASTTALAA-LNFAIEGHKLTVVEADGNYVEPFTVKDIDIY 256
>gnl|CDD|215324 PLN02604, PLN02604, oxidoreductase.
Length = 566
Score = 168 bits (426), Expect = 2e-46
Identities = 92/267 (34%), Positives = 145/267 (54%), Gaps = 26/267 (9%)
Query: 94 DGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM 153
D F++ +++IN + PGP+I +GDT+IV++KN ++ V +HWHG+ Q TPW DG
Sbjct: 39 DCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEG 98
Query: 154 VTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKT-ADPHAELYDF 212
VTQCPI TF Y+F GT+ YH+H G+Q+ GL GS+ + P+ ++P + YD+
Sbjct: 99 VTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPFS--YDY 156
Query: 213 DLYSHVIIVTDWMHSMTDSKFPGNTYNDTRI--KPDAILINGQNQ-------NP------ 257
D II+TDW H T + G + +P ++LI G+ + +P
Sbjct: 157 D---RSIILTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPYLKAGV 213
Query: 258 -KDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVD 316
+P + V K Y +RI + L+ L F IE H + V+ +DG VEP VV
Sbjct: 214 CNATNPECSPYVLTVVPGKTYRLRISSLTALSA-LSFQIEGHNMTVVEADGHYVEPFVVK 272
Query: 317 SVTLFPGDRVDVIIHTNQ--SNNLYWM 341
++ ++ G+ V++ +Q S N YW+
Sbjct: 273 NLFIYSGETYSVLVKADQDPSRN-YWV 298
Score = 33.7 bits (77), Expect = 0.22
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 384 SPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVV 438
+P + V K Y +RI + L+ L F IE H + V+ +DG VEP VV
Sbjct: 218 NPECSPYVLTVVPGKTYRLRISSLTALSA-LSFQIEGHNMTVVEADGHYVEPFVV 271
>gnl|CDD|219542 pfam07732, Cu-oxidase_3, Multicopper oxidase. This entry contains
many divergent copper oxidase-like domains that are not
recognised by the pfam00394 model.
Length = 119
Score = 146 bits (370), Expect = 9e-43
Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 3/113 (2%)
Query: 91 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDG 150
VT G R ++ +N Q PGP+I+V +GDT++V+V N++ D T+HWHG+ Q TPW DG
Sbjct: 7 VTPLGGTRQVIGVNGQFPGPTIRVREGDTVVVNVTNNL-DEPTTIHWHGLRQPGTPWADG 65
Query: 151 VPMVTQCPIPSSTTFRYKFPAM-PSGTFFYHSHVGLQKM-DGLEGSMIIRTPK 201
VP VTQCPIP +F Y+F +GT++YHSH + GL G++II P
Sbjct: 66 VPGVTQCPIPPGESFTYRFTVKQQAGTYWYHSHTSWLQQAAGLYGAIIIEDPA 118
>gnl|CDD|177843 PLN02191, PLN02191, L-ascorbate oxidase.
Length = 574
Score = 155 bits (393), Expect = 9e-42
Identities = 97/296 (32%), Positives = 147/296 (49%), Gaps = 43/296 (14%)
Query: 94 DGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM 153
D E A++++N Q PGP+I GDTI+V + N + + +HWHG+ QK +PW DG
Sbjct: 38 DCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAG 97
Query: 154 VTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAEL-YD- 211
VTQC I TF YKF GT FYH H G+Q+ GL GS+I+ K P L YD
Sbjct: 98 VTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAGLYGSLIVDVAKG--PKERLRYDG 155
Query: 212 -FDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRI--KPDAILINGQNQ------NPKDNSP 262
F+L +++DW H S+ G + R + +ILING+ Q N
Sbjct: 156 EFNL-----LLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQFNCSLAAQFSNGT 210
Query: 263 RVPMHFFK-----------VQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVE 311
+PM FK V+ +K Y +R+ + LA L ++ H+L V+ +DG +
Sbjct: 211 ELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALA-SLNLAVQGHKLVVVEADGNYIT 269
Query: 312 PLVVDSVTLFPGDRVDVIIHTNQ-SNNLYWM------------QAKTLCDSITAEA 354
P D + ++ G+ V++ T+Q + Y++ QA T+ + +TA A
Sbjct: 270 PFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKPNTTQALTILNYVTAPA 325
Score = 33.4 bits (76), Expect = 0.27
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 371 KSDSFPRGKPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDG 430
P K+ P +V+ +K Y +R+ + LA L ++ H+L V+ +DG
Sbjct: 208 NGTELPMCTFKEGDQCAP-QTLRVEPNKTYRIRLASTTALA-SLNLAVQGHKLVVVEADG 265
Query: 431 TAVEPLVVDSVTLF 444
+ P D + ++
Sbjct: 266 NYITPFTTDDIDIY 279
>gnl|CDD|234194 TIGR03389, laccase, laccase, plant. Members of this protein family
include the copper-containing enzyme laccase (EC
1.10.3.2), often several from a single plant species,
and additional, uncharacterized, closely related plant
proteins termed laccase-like multicopper oxidases. This
protein family shows considerable sequence similarity to
the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases
are enzymes of rather broad specificity, and
classification of all proteins scoring about the trusted
cutoff of this model as laccases may be appropriate.
Length = 539
Score = 150 bits (380), Expect = 5e-40
Identities = 86/280 (30%), Positives = 135/280 (48%), Gaps = 33/280 (11%)
Query: 98 RAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQC 157
++IL++N + PGP++ +GDT+IV+V N+ + VT+HWHGV Q W DG +TQC
Sbjct: 22 KSILTVNGKFPGPTLYAREGDTVIVNVTNN-VQYNVTIHWHGVRQLRNGWADGPAYITQC 80
Query: 158 PIPSSTTFRYKFP-AMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTA-----DPHAELYD 211
PI ++ Y F GT ++H+H+ + + G+++I P E+
Sbjct: 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLRAT-VYGAIVILPKPGVPYPFPKPDREV-- 137
Query: 212 FDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKP---DAILINGQNQNPKDNSPRVPMHF 268
II+ +W ++ ++ N N T P DA ING P
Sbjct: 138 ------PIILGEWWNADVEAVI--NQANQTGGAPNVSDAYTINGH---PGPLYNCSSKDT 186
Query: 269 FK--VQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRV 326
FK V+ K YL+RII + L L F I H L V+ D T +P ++ + PG
Sbjct: 187 FKLTVEPGKTYLLRIINAA-LNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIGPGQTT 245
Query: 327 DVIIHTNQSNNLYWMQAKTLC------DSITAEAVLQYEG 360
+V++ +QS Y+M A+ D+ T A+LQY+G
Sbjct: 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKG 285
Score = 42.8 bits (101), Expect = 3e-04
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 372 SDSFP-RGKPKDNSPRVPMHFFK--VQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIAS 428
SD++ G P FK V+ K YL+RII + L L F I H L V+
Sbjct: 166 SDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAA-LNDELFFAIANHTLTVVEV 224
Query: 429 DGTAVEPLVVDSVTLFP 445
D T +P ++ + P
Sbjct: 225 DATYTKPFKTKTIVIGP 241
>gnl|CDD|225043 COG2132, SufI, Putative multicopper oxidases [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 451
Score = 144 bits (366), Expect = 1e-38
Identities = 78/305 (25%), Positives = 119/305 (39%), Gaps = 29/305 (9%)
Query: 86 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVT 145
+R A G + N LPGP+I+V KGDT+ +D+ N ++ + ++HWHG+ V
Sbjct: 40 QRAQLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLV-DTSVHWHGL--PVP 96
Query: 146 PWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADP 205
MDGVP +TQ P T Y F GT++YH H Q DGL G++II +
Sbjct: 97 GEMDGVPPLTQIPPGPGETPTYTFTQDVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL 156
Query: 206 HAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKP-DAILINGQNQNPKDNSPRV 264
D + VI+ DW+ D P D +L+NG
Sbjct: 157 G---VDDE---PVILQDDWLD--EDGTDLYQEGPAMGGFPGDTLLVNGAI---------- 198
Query: 265 PMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGD 324
+ F V +R++ A + L VIA DG + P+ VD + L PG+
Sbjct: 199 -LPFKAVPGGV-VRLRLLNAG-NARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGE 255
Query: 325 RVDVIIHTNQSNNLYWMQAKTLCDSITAEAVLQYEGEKLTYVSKRPKSDSFPRGKPKDNS 384
R +V++ N + +Y P + D +
Sbjct: 256 RYEVLVDMNDGGAVTLTALGEDMPDTLKGFRAPNPILTPSY----PVLNGRVGAPTGDMA 311
Query: 385 PRVPM 389
P+
Sbjct: 312 DHAPV 316
Score = 34.0 bits (78), Expect = 0.16
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 387 VPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFP 445
+ F V +R++ A + L VIA DG + P+ VD + L P
Sbjct: 197 AILPFKAVPGGV-VRLRLLNAG-NARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAP 253
Score = 30.9 bits (70), Expect = 1.3
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 6/58 (10%)
Query: 126 NHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV 183
H +V W D V + +F A G + +H H+
Sbjct: 383 LHGHFFQVLSGDAPAPGAAPGWKDTVLV------APGERLLVRFDADYPGPWMFHCHI 434
>gnl|CDD|132431 TIGR03390, ascorbOXfungal, L-ascorbate oxidase, fungal type. This
model describes a family of fungal ascorbate oxidases,
within a larger family of multicopper oxidases that also
includes plant ascorbate oxidases (TIGR03388), plant
laccases and laccase-like proteins (TIGR03389), and
related proteins. The member from Acremonium sp. HI-25
is characterized.
Length = 538
Score = 135 bits (341), Expect = 1e-34
Identities = 86/305 (28%), Positives = 141/305 (46%), Gaps = 48/305 (15%)
Query: 97 ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQ 156
R + +N PGP I++ +G T + V N + D VT+HWHG+ Q+ P+ DG P+ +Q
Sbjct: 26 SRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQ 85
Query: 157 CPIPSSTTFRYKFPAMP--SGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDL 214
PIP F Y+ P +G++FYHSHVG Q + G +I+ + Y +D
Sbjct: 86 WPIPPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTA-FGPLIVEDCEPPP-----YKYD- 138
Query: 215 YSHVIIVTDWMHSMTDS-----------KFPGNTYNDTRIKPDAILINGQNQNPKDNSPR 263
+++V+D+ S TD + G + +A+L+NG++ N +
Sbjct: 139 DERILLVSDFF-SATDEEIEQGLLSTPFTWSG--------ETEAVLLNGKSGNKSFYAQI 189
Query: 264 VP-----MHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQ-LQVIASDGTAVEPLVVDS 317
P + V+ K Y +R IG + L+ + IE H+ L +I +DG+ +P +D
Sbjct: 190 NPSGSCMLPVIDVEPGKTYRLRFIGATALSL-ISLGIEDHENLTIIEADGSYTKPAKIDH 248
Query: 318 VTLFPGDRVDVIIHTNQSNNL-------YWMQAKTLC--DSITAEAVLQYE---GEKLTY 365
+ L G R V+ + L Y++Q +T AVL+Y KL
Sbjct: 249 LQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPS 308
Query: 366 VSKRP 370
V + P
Sbjct: 309 VPETP 313
Score = 33.7 bits (77), Expect = 0.22
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 389 MHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQ-LQVIASDGTAVEPLVVDSVTLFP 445
+ V+ K Y +R IG + L+ + IE H+ L +I +DG+ +P +D + L
Sbjct: 197 LPVIDVEPGKTYRLRFIGATALSL-ISLGIEDHENLTIIEADGSYTKPAKIDHLQLGG 253
>gnl|CDD|177987 PLN02354, PLN02354, copper ion binding / oxidoreductase.
Length = 552
Score = 117 bits (295), Expect = 2e-28
Identities = 85/296 (28%), Positives = 139/296 (46%), Gaps = 31/296 (10%)
Query: 89 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWM 148
G + G + ++ IN Q PGP+I + I+++V N+ +D L W G+ Q+ W
Sbjct: 37 GTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNN-LDEPFLLTWSGIQQRKNSWQ 95
Query: 149 DGVPMVTQCPIPSSTTFRYKF-PAMPSGTFFYHSHVGLQKMDGLEGSM------IIRTPK 201
DGVP T CPIP T F Y F P G++FY+ G+ + G G + +I P
Sbjct: 96 DGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVP- 153
Query: 202 TADPHAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYND---TRIKPDAILINGQNQNPK 258
ADP + + +++ DW T S + D T +PD +LING++
Sbjct: 154 YADPEDD--------YTVLIGDW---YTKSHTALKKFLDSGRTLGRPDGVLINGKSGKGD 202
Query: 259 DNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSV 318
P+ F ++ K Y RI L L F I+ H+++++ +G+ V DS+
Sbjct: 203 GKDE--PL--FTMKPGKTYRYRICNVG-LKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSL 257
Query: 319 TLFPGDRVDVIIHTNQSNNLYWMQAKT--LCDSITAEAVLQYEGEKLTYVSKRPKS 372
+ G V++ NQ+ Y+M A T L +T +++YEG K + P++
Sbjct: 258 DVHVGQCFSVLVTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEA 313
>gnl|CDD|215896 pfam00394, Cu-oxidase, Multicopper oxidase. Many of the proteins
in this family contain multiple similar copies of this
plastocyanin-like domain.
Length = 146
Score = 98.5 bits (246), Expect = 1e-24
Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 21/155 (13%)
Query: 216 SHVIIVTDWMHSMTDSKFPGNTYNDTRIK-------PDAILINGQNQNPKDNSPRVPMHF 268
+VI ++DW H D+K + PDA+LING++ +
Sbjct: 2 DYVITLSDWYH--KDAKDLEKELLASGKAPTDFPPVPDAVLINGKD--GASLAT------ 51
Query: 269 FKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDV 328
V K Y +RII + L F+IE H++ V+ DG V P VDS+ +FPG R V
Sbjct: 52 LTVTPGKTYRLRIINVALDD-SLNFSIEGHKMTVVEVDGVYVNPFTVDSLDIFPGQRYSV 110
Query: 329 IIHTNQSNNLYWMQAKTLC---DSITAEAVLQYEG 360
++ NQ YW+ A D+ TA A+L+Y G
Sbjct: 111 LVTANQDPGNYWIVASPNIPAFDNGTAAAILRYSG 145
Score = 56.5 bits (137), Expect = 9e-10
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 392 FKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFP 445
V K Y +RII + L F+IE H++ V+ DG V P VDS+ +FP
Sbjct: 52 LTVTPGKTYRLRIINVALDD-SLNFSIEGHKMTVVEVDGVYVNPFTVDSLDIFP 104
>gnl|CDD|233432 TIGR01480, copper_res_A, copper-resistance protein, CopA family.
This model represents the CopA copper resistance protein
family. CopA is related to laccase (benzenediol:oxygen
oxidoreductase) and L-ascorbate oxidase, both
copper-containing enzymes. Most members have a typical
TAT (twin-arginine translocation) signal sequence with
an Arg-Arg pair. Twin-arginine translocation is observed
for a large number of periplasmic proteins that cross
the inner membrane with metal-containing cofactors
already bound. The combination of copper-binding sites
and TAT translocation motif suggests a mechansism of
resistance by packaging and export [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 587
Score = 106 bits (265), Expect = 1e-24
Identities = 79/279 (28%), Positives = 121/279 (43%), Gaps = 52/279 (18%)
Query: 91 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPW-MD 149
V G R +++N +PGP ++ +GDT+ + V N + + ++HWHG+ + P+ MD
Sbjct: 57 VNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTN-TLPEDTSIHWHGI---LLPFQMD 112
Query: 150 GVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAEL 209
GVP V+ I TF Y+FP SGT++YHSH G Q+ GL G +II P DP
Sbjct: 113 GVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLYGPLII-DPAEPDPVR-- 169
Query: 210 YDFDLYSHVIIVTDW--MHSMTD-SKFPGNTYNDTRIKPDA------ILINGQNQNPKD- 259
D + HV++++DW + K +D K + +G Q D
Sbjct: 170 ADRE---HVVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTVADFFRDVRNDGLKQTLADR 226
Query: 260 ---NSPRV-PMHFFKVQRD----------------------KRYLMRIIGGSCLACPLIF 293
R+ P V ++ +R I GS + F
Sbjct: 227 KMWGQMRMTPTDLADVNGSTYTYLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMT---YF 283
Query: 294 T--IEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVII 330
I +L V+A DG V P+ VD + P + DVI+
Sbjct: 284 DVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIV 322
>gnl|CDD|178429 PLN02835, PLN02835, oxidoreductase.
Length = 539
Score = 103 bits (257), Expect = 1e-23
Identities = 87/299 (29%), Positives = 134/299 (44%), Gaps = 34/299 (11%)
Query: 89 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWM 148
G ++ G + ++ IN Q PGP + V D II+++ N + D+ L W+G+ Q+ W
Sbjct: 39 GTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKL-DQPFLLTWNGIKQRKNSWQ 97
Query: 149 DGVPMVTQCPIPSSTTFRYKFPAMPS-GTFFYHSHVGLQKMDGLEGSM-IIRTPKTADPH 206
DGV + T CPIP ++ + YKF GTF Y K G G++ + P+ P
Sbjct: 98 DGV-LGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPF 156
Query: 207 AE-LYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIK--PDAILINGQNQNPKDNSPR 263
DF L +V DW T K + ++ PD +LINGQ Q+
Sbjct: 157 PLPDGDFTL-----LVGDWYK--TSHKTLQQRLDSGKVLPFPDGVLINGQTQST------ 203
Query: 264 VPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPG 323
F + K Y+ R I L+ L F I+ H ++++ +G+ + DS+ + G
Sbjct: 204 -----FSGDQGKTYMFR-ISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVG 257
Query: 324 DRVDVIIHTNQSNNLYWMQAKT--LCDSITAEAVLQYEGEKLTYVSKRPKSDSFPRGKP 380
V V++ NQS Y++ A T +TA AVL Y S+ P S P
Sbjct: 258 QSVAVLVTLNQSPKDYYIVASTRFTRQILTATAVLHYSN------SRTPASGPLPALPS 310
>gnl|CDD|178389 PLN02792, PLN02792, oxidoreductase.
Length = 536
Score = 85.8 bits (212), Expect = 6e-18
Identities = 77/293 (26%), Positives = 125/293 (42%), Gaps = 24/293 (8%)
Query: 89 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWM 148
G ++ R + IN Q PGP I+ D ++++V N + D L W+GV+ + +
Sbjct: 26 GNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDL-DEPFLLSWNGVHMRKNSYQ 84
Query: 149 DGVPMVTQCPIPSSTTFRYKFPAMPS-GTFFYHSHVGLQKMDGLEGSM-IIRTPKTADPH 206
DGV T CPIP + Y F G++FY + +QK G GS+ I P+ P
Sbjct: 85 DGV-YGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPF 143
Query: 207 AE-LYDFDLYSHVIIVTDWM-HSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRV 264
E DF ++ DW + T K + + PD ++INGQ +
Sbjct: 144 PEPAGDF-----TFLIGDWYRRNHTTLKKILDGGRKLPLMPDGVMINGQGVS-------- 190
Query: 265 PMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGD 324
++ V + K Y R I L L F I HQL++I +GT + S+ + G
Sbjct: 191 YVYSITVDKGKTYRFR-ISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQ 249
Query: 325 RVDVIIHTNQSNNLYWMQAKT--LCDSITAEAVLQYEGEKLTYV--SKRPKSD 373
V++ +Q Y + T + + + L Y K + +++P D
Sbjct: 250 TYSVLVTMDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKIIHARQPDPD 302
>gnl|CDD|215113 PLN02168, PLN02168, copper ion binding / pectinesterase.
Length = 545
Score = 83.5 bits (206), Expect = 4e-17
Identities = 83/335 (24%), Positives = 140/335 (41%), Gaps = 52/335 (15%)
Query: 95 GFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMV 154
G + ++ IN PGP + D I V++ N++ + + W+G+ + W DGV
Sbjct: 42 GGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTE-PFLMTWNGLQLRKNSWQDGV-RG 99
Query: 155 TQCPIPSSTTFRYKFPAMPS-GTFFYHSHVGLQKMDGLEGSMIIRTPKTA-----DPHAE 208
T CPI T + Y+F G++FY + LQK G G++ I P+ P E
Sbjct: 100 TNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEE 159
Query: 209 LYDFDLYSHVIIVTDWMHS----MTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRV 264
YD I++ DW ++ M S G++ PD IL NG+
Sbjct: 160 -YD-------ILIGDWFYADHTVMRASLDNGHSLP----NPDGILFNGRGPEET------ 201
Query: 265 PMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGD 324
FF + K Y +RI C L F I+ H + ++ ++GT V+ V S+ + G
Sbjct: 202 ---FFAFEPGKTYRLRISNVGLKTC-LNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQ 257
Query: 325 RVDVIIHT-NQSNNL---YWMQAKT-LCDS-ITAEAVLQYEGEKLTYVSKRPKSDSFPRG 378
V++ + Y++ A D+ + A+++Y P S P G
Sbjct: 258 SYSVLVTAKTDPVGIYRSYYIVATARFTDAYLGGVALIRY-----------PNSPLDPVG 306
Query: 379 KPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACP 413
P +P + +F V++ M + G+ + P
Sbjct: 307 -PLPLAPALHDYFSSVEQALSIRMDLNVGAARSNP 340
>gnl|CDD|165622 PLN00044, PLN00044, multi-copper oxidase-related protein;
Provisional.
Length = 596
Score = 80.5 bits (198), Expect = 3e-16
Identities = 72/296 (24%), Positives = 123/296 (41%), Gaps = 32/296 (10%)
Query: 97 ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQ 156
++ + IN Q PGP++ V ++V+V+N + D + L WHGV Q+ + W DGV T
Sbjct: 47 KQEAIGINGQFPGPALNVTTNWNLVVNVRNAL-DEPLLLTWHGVQQRKSAWQDGV-GGTN 104
Query: 157 CPIPSSTTFRYKFPAMPS-GTFFYHSHVGLQKMDGLEGSMIIRTPKTAD---PHAELYDF 212
C IP+ + Y+F G+FFY L + G G++ I + D
Sbjct: 105 CAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDI 164
Query: 213 DLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNS---PRVPMHFF 269
L+ + DW + D PD +LIN ++S P +
Sbjct: 165 TLF-----IADWYARDHRALRRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERI 219
Query: 270 KVQRDKRYLMRI--IGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVD 327
V K Y R+ +G +A L F I+ H L ++ ++G+ ++ + G
Sbjct: 220 NVDPGKTYRFRVHNVG---VATSLNFRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYS 276
Query: 328 VIIHTNQSNNL-YWMQAK------TLCDSITAEAVLQYEGEKLTYVSKRPKSDSFP 376
++ +Q+ + Y++ A + D +T A+L Y S+ P S P
Sbjct: 277 FLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSN------SQGPASGPLP 326
>gnl|CDD|215536 PLN02991, PLN02991, oxidoreductase.
Length = 543
Score = 74.7 bits (183), Expect = 2e-14
Identities = 71/281 (25%), Positives = 111/281 (39%), Gaps = 29/281 (10%)
Query: 103 INRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSS 162
IN + PGP I D +I++V NH+ D + W G+ + DGV T CPIP
Sbjct: 52 INGKFPGPDIISVTNDNLIINVFNHL-DEPFLISWSGIRNWRNSYQDGV-YGTTCPIPPG 109
Query: 163 TTFRYKFPAMPS-GTFFYHSHVGLQKMDGLEGSMIIRT-PKTADPHAELYDFDLYSHVII 220
+ Y G+F+Y +G K G G++ I + P P D + ++
Sbjct: 110 KNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPAD----DYTVL 165
Query: 221 VTDWMHSMTDSKFPGNTYNDTRIK-PDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLM 279
+ DW + N ++ PD ILING+ N ++ K Y +
Sbjct: 166 IGDW-YKTNHKDLRAQLDNGGKLPLPDGILINGRGSGATLN----------IEPGKTYRL 214
Query: 280 RIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLY 339
R I L L F I+ H ++++ +GT S+ + G V+I +Q Y
Sbjct: 215 R-ISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQPAKDY 273
Query: 340 WMQAKTLCDS--ITAEAVLQYEGEKLTYVSKRPKSDSFPRG 378
++ + S + VL Y S P S P G
Sbjct: 274 YIVVSSRFTSKILITTGVLHYSN------SAGPVSGPIPDG 308
>gnl|CDD|236810 PRK10965, PRK10965, multicopper oxidase; Provisional.
Length = 523
Score = 62.3 bits (152), Expect = 2e-10
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Query: 103 INRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSS 162
N L GP++++ +G + VD+ N + E TLHWHG+ +V +DG P Q I
Sbjct: 70 YNGNLLGPAVRLQRGKAVTVDITNQL-PEETTLHWHGL--EVPGEVDGGP---QGIIAPG 123
Query: 163 TTFRYKF-PAMPSGTFFYHSH----VGLQKMDGLEGSMIIRTPKTA 203
F P+ T ++H H G Q GL G ++I ++
Sbjct: 124 GKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESL 169
Score = 32.7 bits (75), Expect = 0.45
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 294 TIEKHQLQVIASDGTAV-EPLVVDSVTLFPGDRVDVIIHT 332
T + L VIASDG + EP+ V + + G+R +V++ T
Sbjct: 249 TSDGRPLYVIASDGGLLAEPVKVSELPILMGERFEVLVDT 288
>gnl|CDD|131429 TIGR02376, Cu_nitrite_red, nitrite reductase, copper-containing.
This family consists of copper-type nitrite reductase.
It reduces nitrite to nitric oxide, the first step in
denitrification [Central intermediary metabolism,
Nitrogen metabolism].
Length = 311
Score = 37.1 bits (86), Expect = 0.015
Identities = 37/175 (21%), Positives = 61/175 (34%), Gaps = 38/175 (21%)
Query: 94 DGFERAILSINRQLPGPSIQVCKGDTIIVDVKN-------HMIDREVTLHWHGVYQKVTP 146
DG ++ + +PGP I+V +GD + + + N H +D + T
Sbjct: 43 DGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVD----------FHAATG 92
Query: 147 WMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH----SHVGLQKMDGLEGSMIIRTPKT 202
+ G + TQ + T R+K A G F YH V + G+ G I+ P+
Sbjct: 93 ALGGAAL-TQVNPGETATLRFK--ATRPGAFVYHCAPPGMVPWHVVSGMNG-AIMVLPRE 148
Query: 203 ADPHAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIK-----PDAILING 252
P Y + + + G Y D P ++ NG
Sbjct: 149 GLPE--------YDKEYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNG 195
>gnl|CDD|234138 TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB. Members of
this protein family are the CpaB protein of Flp-type
pilus assembly. Similar proteins include the FlgA
protein of bacterial flagellum biosynthesis.
Length = 261
Score = 33.0 bits (76), Expect = 0.25
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 13/61 (21%)
Query: 302 VIASDGTAVEPLVVDSVT-----LFPGDRVDVIIHTNQSNNLYWMQAKTLCDSITAEAVL 356
+I AV + VD VT + PGDRVDV++ + D ++ VL
Sbjct: 109 LIPPGMRAV-AIRVDEVTGVGGFILPGDRVDVLLTRRDDGS-------RPNDRAVSKTVL 160
Query: 357 Q 357
Q
Sbjct: 161 Q 161
>gnl|CDD|182808 PRK10883, PRK10883, FtsI repressor; Provisional.
Length = 471
Score = 32.0 bits (73), Expect = 0.65
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 27/110 (24%)
Query: 246 DAILINGQNQNPKDNSPR--VPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVI 303
D +L+NG Q+P R V + +RY +++ G L VI
Sbjct: 210 DTLLVNGV-QSPYVEVSRGWVRLRLLNASNARRYQLQMSDG-------------RPLHVI 255
Query: 304 ASD-GTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTLCDSITA 352
A D G P+ V ++L PG+R ++++ + + + SITA
Sbjct: 256 AGDQGFLPAPVSVKQLSLAPGERREILVDMSNGDEV----------SITA 295
>gnl|CDD|219541 pfam07731, Cu-oxidase_2, Multicopper oxidase. This entry contains
many divergent copper oxidase-like domains that are not
recognised by the pfam00394 model.
Length = 135
Score = 28.6 bits (64), Expect = 3.2
Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 29/131 (22%)
Query: 91 VTADGFERAILSINRQLPGPS--IQVCKGDTIIVDVKNHMIDREVTLHWHGV-------- 140
+T N G + I + GD + + ++N+ H HG
Sbjct: 12 ITGGNDRANWSPDNGPPLGTTEVITLPNGDRVEIVLQNN-TMGPHPFHLHGHSFQVLGRG 70
Query: 141 ---------YQKVTP-WMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQKMD- 189
Y V P D Q P R+K G + +H H+ L +D
Sbjct: 71 GGPWTPTATYNLVDPVRRD----TVQVPPGGWVAIRFKADN--PGPWLFHCHI-LWHLDQ 123
Query: 190 GLEGSMIIRTP 200
G+ G ++
Sbjct: 124 GMMGQFVVDPG 134
>gnl|CDD|150002 pfam09162, Tap-RNA_bind, Tap, RNA-binding. Members of this family
adopt a structure consisting of an alpha+beta sandwich
with an antiparallel beta-sheet, arranged in a
2(beta-alpha-beta) motif. They are mainly found in mRNA
export factors, and mediate the sequence nonspecific
nuclear export of cellular mRNAs as well as the
sequence-specific export of retroviral mRNAs bearing the
constitutive transport element.
Length = 88
Score = 27.3 bits (61), Expect = 4.4
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 274 DKRYLMRIIGGSCLA--CPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIH 331
DK++L+ I C P+ F + + Q D L S + D + I
Sbjct: 19 DKKWLLNSIQSLCSVPFTPVEFHYDGMRAQFFVEDSRTASALKQVSRKITDEDNQKISIF 78
Query: 332 TNQS 335
N S
Sbjct: 79 VNPS 82
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.426
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,341,870
Number of extensions: 2111213
Number of successful extensions: 1533
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1480
Number of HSP's successfully gapped: 32
Length of query: 445
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 345
Effective length of database: 6,502,202
Effective search space: 2243259690
Effective search space used: 2243259690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.3 bits)