RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16562
(445 letters)
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG
MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3
b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A*
2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Length = 559
Score = 328 bits (843), Expect = e-107
Identities = 87/328 (26%), Positives = 138/328 (42%), Gaps = 28/328 (8%)
Query: 43 NNLCARPC-DNAKPLVCYYSFTLENYATVGPACADCLKGNQKACRRKGCVTADGF-ERAI 100
N R C + + Y + + + + + + DG + +
Sbjct: 5 NTPSNRACWSDGFDINTDYEVSTPDTGVTQSYVFNLTEVD-------NWMGPDGVVKEKV 57
Query: 101 LSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPI- 159
+ IN + GP+I GDT+ V V N+++ ++HWHG+ QK T DG VT+CPI
Sbjct: 58 MLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPIP 117
Query: 160 PSSTTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDLYSHVI 219
P Y++ A GT +YHSH Q +G+ G++ I P + YD DL V
Sbjct: 118 PKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQIN-----GPASLPYDIDL--GVF 170
Query: 220 IVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLM 279
+TD+ + D N D +LING NP N+ + KR+ +
Sbjct: 171 PITDYYYRAADDLVHFTQNNAPPF-SDNVLINGTAVNP--NTGEGQYANVTLTPGKRHRL 227
Query: 280 RIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNLY 339
RI+ S ++ H + VIA+D V + VDS+ L G R DV+I +++ + Y
Sbjct: 228 RILNTSTE-NHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNY 286
Query: 340 WMQAKTLCDS-------ITAEAVLQYEG 360
W + A+ Y G
Sbjct: 287 WFNVTFGGQAACGGSLNPHPAAIFHYAG 314
Score = 75.9 bits (187), Expect = 7e-15
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 370 PKSDSF-PRGKPKD-NSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIA 427
P SD+ G + N+ + KR+ +RI+ S ++ H + VIA
Sbjct: 193 PFSDNVLINGTAVNPNTGEGQYANVTLTPGKRHRLRILNTSTE-NHFQVSLVNHTMTVIA 251
Query: 428 SDGTAVEPLVVDSVTLFP 445
+D V + VDS+ L
Sbjct: 252 ADMVPVNAMTVDSLFLAV 269
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum
ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Length = 495
Score = 320 bits (823), Expect = e-105
Identities = 90/282 (31%), Positives = 137/282 (48%), Gaps = 19/282 (6%)
Query: 89 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMID----REVTLHWHGVYQKV 144
+ DGF R ++ PGP I GD + N +I+ + ++HWHG +QK
Sbjct: 14 ADIVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKG 73
Query: 145 TPWMDGVPMVTQCPIPSSTTFRYKFPAMP-SGTFFYHSHVGLQKMDGLEGSMIIRTPKTA 203
T W DG +TQCPI +F Y F +GT++YHSH+ Q DGL G ++ P
Sbjct: 74 TNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPN-- 131
Query: 204 DPHAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPR 263
DP A LYD D + +I + DW H + G I D+ LI+G + + +
Sbjct: 132 DPDANLYDVDDDTTIITLADWYHVLAKEMGAGGA-----ITADSTLIDGLGRTHVNVAA- 185
Query: 264 VPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPG 323
VP+ V+ KRY MR++ SC F+I+ H + +I +DG + L VD + +F
Sbjct: 186 VPLSVITVEVGKRYRMRLVSISCDP-NYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAA 244
Query: 324 DRVDVIIHTNQSNNLYWMQAKTLC-----DSITAEAVLQYEG 360
R +++ NQ YW++A D A+L+Y+G
Sbjct: 245 QRYSFVLNANQPVGNYWIRANPNSGGEGFDGGINSAILRYDG 286
Score = 77.7 bits (192), Expect = 1e-15
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 370 PKSDSF---PRGKPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVI 426
+DS G+ N VP+ V+ KRY MR++ SC F+I+ H + +I
Sbjct: 166 ITADSTLIDGLGRTHVNVAAVPLSVITVEVGKRYRMRLVSISCDP-NYDFSIDGHDMTII 224
Query: 427 ASDGTAVEPLVVDSVTLFP 445
+DG + L VD + +F
Sbjct: 225 ETDGVDSQELTVDEIQIFA 243
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2
Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB:
3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A*
2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A*
4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Length = 499
Score = 319 bits (820), Expect = e-105
Identities = 94/310 (30%), Positives = 144/310 (46%), Gaps = 25/310 (8%)
Query: 89 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDRE----VTLHWHGVYQKV 144
V+ DGF R + +N PGP + GD ++V +++ + ++HWHG +Q
Sbjct: 13 AAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHG 72
Query: 145 TPWMDGVPMVTQCPIPSSTTFRYKFPAM-PSGTFFYHSHVGLQKMDGLEGSMIIRTPKTA 203
T W DG + QCPI +F Y F +GTF+YHSH+ Q DGL G ++ P
Sbjct: 73 TNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPN-- 130
Query: 204 DPHAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPR 263
DPHA YD D VI + DW H+ DA LING+ + P +
Sbjct: 131 DPHASRYDVDNDDTVITLADWYHTAAKLGPRFPG------GADATLINGKGRAP--SDSV 182
Query: 264 VPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPG 323
+ KV + KRY R++ SC F+I+ H L +I D +PL VDS+ +F
Sbjct: 183 AELSVIKVTKGKRYRFRLVSLSCNP-NHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAA 241
Query: 324 DRVDVIIHTNQSNNLYWMQAKTLCDSI-----TAEAVLQYEGEKLTYVSKRPKSDSFPRG 378
R ++ NQ+ + YW++A ++ A+L+Y+G + P ++
Sbjct: 242 QRYSFVLDANQAVDNYWIRANPNFGNVGFDGGINSAILRYDGAP----AVEPTTNQTTSV 297
Query: 379 KPKDNSPRVP 388
KP + P
Sbjct: 298 KPLNEVDLHP 307
Score = 71.9 bits (177), Expect = 1e-13
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 370 PKSDSFP-RGKPK-DNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIA 427
+D+ GK + + + KV + KRY R++ SC F+I+ H L +I
Sbjct: 164 GGADATLINGKGRAPSDSVAELSVIKVTKGKRYRFRLVSLSCNP-NHTFSIDGHNLTIIE 222
Query: 428 SDGTAVEPLVVDSVTLFP 445
D +PL VDS+ +F
Sbjct: 223 VDSVNSQPLEVDSIQIFA 240
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A
{Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1aso_A* 1asp_A* 1asq_A*
Length = 552
Score = 316 bits (813), Expect = e-103
Identities = 87/291 (29%), Positives = 137/291 (47%), Gaps = 26/291 (8%)
Query: 91 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDG 150
+ E ++ IN Q PGP+I+ GD+++V++ N + V +HWHG+ Q+ TPW DG
Sbjct: 15 WAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADG 74
Query: 151 VPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELY 210
++QC I TF Y F GTFFYH H+G+Q+ GL GS+I+ P E +
Sbjct: 75 TASISQCAINPGETFFYNFTVDNPGTFFYHGHLGMQRSAGLYGSLIVDPP---QGKKEPF 131
Query: 211 DFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRI--KPDAILINGQNQ------------- 255
+D ++++DW H + G + R +P IL+NG+ Q
Sbjct: 132 HYD-GEINLLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQFDCSIAAKYDSNL 190
Query: 256 --NPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPL 313
S + F V K Y +RI + L L F I HQL V+ +DG V+P
Sbjct: 191 EPCKLKGSESCAPYIFHVSPKKTYRIRIASTTAL-AALNFAIGNHQLLVVEADGNYVQPF 249
Query: 314 VVDSVTLFPGDRVDVIIHTNQS-NNLYWMQAKTLC---DSITAEAVLQYEG 360
+ ++ G+ V+I T+Q+ + YW+ T ++ +L Y
Sbjct: 250 YTSDIDIYSGESYSVLITTDQNPSENYWVSVGTRARHPNTPPGLTLLNYLP 300
Score = 71.2 bits (175), Expect = 2e-13
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 380 PKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVD 439
S + F V K Y +RI + L L F I HQL V+ +DG V+P
Sbjct: 194 KLKGSESCAPYIFHVSPKKTYRIRIASTTAL-AALNFAIGNHQLLVVEADGNYVQPFYTS 252
Query: 440 SVTLFP 445
+ ++
Sbjct: 253 DIDIYS 258
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET:
NAG BMA MAN; 1.67A {Botrytis aclada}
Length = 580
Score = 317 bits (814), Expect = e-103
Identities = 96/336 (28%), Positives = 143/336 (42%), Gaps = 40/336 (11%)
Query: 46 CARPCDN-AKPLVCYYSFTLE-NYATVGPACADCLKGNQKACRRK-------GCVTADGF 96
C N A C+ ++++ N+ V P R+ +T DG+
Sbjct: 35 TTASCANSATSRSCWGEYSIDTNWYDVTPT----------GVTREYWLSVENSTITPDGY 84
Query: 97 ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQ 156
R+ ++ N +PGP+I GD +I+ V N++ ++HWHG+ Q + DGVP VTQ
Sbjct: 85 TRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQ 144
Query: 157 CPIPSSTTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDLYS 216
CPI T YKF GT +YHSH LQ DGL G +II P TAD YD D+
Sbjct: 145 CPIAPGDTLTYKFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGPATAD-----YDEDV-- 197
Query: 217 HVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSP------RVPMHFFK 270
VI + DW H + + L+NG N S
Sbjct: 198 GVIFLQDWAHESVFEIWDTARLGAPPA-LENTLMNGTNTFDCSASTDPNCVGGGKKFELT 256
Query: 271 VQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVII 330
+Y +R+I + F I+ H L VIA+D + P D++ + G R DVI+
Sbjct: 257 FVEGTKYRLRLINVGIDS-HFEFAIDNHTLTVIANDLVPIVPYTTDTLLIGIGQRYDVIV 315
Query: 331 HTNQSNNLYWMQAKTLCDSI------TAEAVLQYEG 360
N + + YW++ A +L+Y+
Sbjct: 316 EANAAADNYWIRGNWGTTCSTNNEAANATGILRYDS 351
Score = 70.2 bits (172), Expect = 5e-13
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 392 FKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFP 445
+Y +R+I + F I+ H L VIA+D + P D++ +
Sbjct: 255 LTFVEGTKYRLRLINVGIDS-HFEFAIDNHTLTVIANDLVPIVPYTTDTLLIGI 307
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus
lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Length = 521
Score = 309 bits (794), Expect = e-101
Identities = 95/281 (33%), Positives = 139/281 (49%), Gaps = 17/281 (6%)
Query: 91 VTADGF-ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDRE----VTLHWHGVYQKVT 145
+ DG R+ ++ P I D ++V + + D ++HWHG +Q T
Sbjct: 35 LDPDGTGARSAVTAEGTTIAPLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGT 94
Query: 146 PWMDGVPMVTQCPIPSSTTFRYKFPAMP-SGTFFYHSHVGLQKMDGLEGSMIIRTPKTAD 204
MDG V QCPI + +F Y F +GT++YHSH+ Q DGL G+ ++ P D
Sbjct: 95 TEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPN--D 152
Query: 205 PHAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRV 264
PH LYD D S VI + DW HS++ FP PD LING +N + S
Sbjct: 153 PHLSLYDVDDASTVITIADWYHSLSTVLFPNPNKAPP--APDTTLINGLGRNSANPSAG- 209
Query: 265 PMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGD 324
+ VQ KRY RI+ SC F+I+ H++ VI DG + +PL VDS+T+F G
Sbjct: 210 QLAVVSVQSGKRYRFRIVSTSCFP-NYAFSIDGHRMTVIEVDGVSHQPLTVDSLTIFAGQ 268
Query: 325 RVDVIIHTNQSNNLYWMQAK--TLCDSI---TAEAVLQYEG 360
R V++ NQ+ YW++A + A+ +Y+G
Sbjct: 269 RYSVVVEANQAVGNYWIRANPSNGRNGFTGGINSAIFRYQG 309
Score = 72.4 bits (178), Expect = 7e-14
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 370 PKSDSF---PRGKPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVI 426
P D+ G+ N + VQ KRY RI+ SC F+I+ H++ VI
Sbjct: 189 PAPDTTLINGLGRNSANPSAGQLAVVSVQSGKRYRFRIVSTSCFP-NYAFSIDGHRMTVI 247
Query: 427 ASDGTAVEPLVVDSVTLFP 445
DG + +PL VDS+T+F
Sbjct: 248 EVDGVSHQPLTVDSLTIFA 266
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper
depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A
{Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1a65_A*
Length = 503
Score = 306 bits (785), Expect = 1e-99
Identities = 101/286 (35%), Positives = 142/286 (49%), Gaps = 27/286 (9%)
Query: 89 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDRE----VTLHWHGVYQKV 144
V+ DGF RA + +N GP I+ K D ++V N + + ++HWHG++Q+
Sbjct: 14 ANVSPDGFTRAGILVNGV-HGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRG 72
Query: 145 TPWMDGVPMVTQCPIPSSTTFRYKF-PAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTA 203
T W DG V QCPI F YKF PA +GTF+YHSH G Q DGL G M+I
Sbjct: 73 TNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDN-- 130
Query: 204 DPHAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPR 263
DPHA LYD D + +I + DW H S PDA LING+ + P
Sbjct: 131 DPHAALYDEDDENTIITLADWYHIPAPSIQGAAQ-------PDATLINGKGRYV--GGPA 181
Query: 264 VPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPG 323
+ V++ K+Y MR+I SC F+I+ H+L +I DG EP VD + +F G
Sbjct: 182 AELSIVNVEQGKKYRMRLISLSCDP-NWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTG 240
Query: 324 DRVDVIIHTNQSNNLYWMQAKTLC---------DSITAEAVLQYEG 360
R ++ NQ + YW++A+ + A+L+Y G
Sbjct: 241 QRYSFVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAG 286
Score = 73.5 bits (181), Expect = 3e-14
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 370 PKSDSF---PRGKPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVI 426
+ D+ +G P + V++ K+Y MR+I SC F+I+ H+L +I
Sbjct: 163 AQPDATLINGKG-RYVGGPAAELSIVNVEQGKKYRMRLISLSCDP-NWQFSIDGHELTII 220
Query: 427 ASDGTAVEPLVVDSVTLFP 445
DG EP VD + +F
Sbjct: 221 EVDGELTEPHTVDRLQIFT 239
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc;
HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Length = 534
Score = 283 bits (725), Expect = 2e-90
Identities = 78/288 (27%), Positives = 127/288 (44%), Gaps = 35/288 (12%)
Query: 89 GCVTADGFE-RAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPW 147
DG + R +++ N Q P P I V KGD + + + N M + ++H+HG++Q T
Sbjct: 12 DYRNVDGLKSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTAS 71
Query: 148 MDGVPMVTQCPIPSSTTFRYKFPAMP-SGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPH 206
MDGVP +TQCPI +T Y F GT++YHSH Q DG++G II+
Sbjct: 72 MDGVPFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKDD------ 125
Query: 207 AELYDFDLYSHVIIVTDWMHSMTDSKFPG--NTYNDTRI--KPDAILINGQNQNPKDNSP 262
+ YD+D + +++W H + + YN T P +++N
Sbjct: 126 SFPYDYDE-ELSLSLSEWYHDLVTDLTKSFMSVYNPTGAEPIPQNLIVNNTMNLT----- 179
Query: 263 RVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFP 322
++VQ D YL+RI+ F IE H++ V+ DG E V D + +
Sbjct: 180 ------WEVQPDTTYLLRIVNVGGFV-SQYFWIEDHEMTVVEIDGITTEKNVTDMLYITV 232
Query: 323 GDRVDVIIHTNQSNNLYWMQAKTLCDS----------ITAEAVLQYEG 360
R V++HT + + + D+ + A + + Y
Sbjct: 233 AQRYTVLVHTKNDTDKNFAIMQKFDDTMLDVIPSDLQLNATSYMVYNK 280
Score = 71.5 bits (176), Expect = 1e-13
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 392 FKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFP 445
++VQ D YL+RI+ F IE H++ V+ DG E V D + +
Sbjct: 180 WEVQPDTTYLLRIVNVGGFV-SQYFWIEDHEMTVVEIDGITTEKNVTDMLYITV 232
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B
protein; 1.90A {Nitrosomonas europaea}
Length = 318
Score = 258 bits (662), Expect = 1e-83
Identities = 72/253 (28%), Positives = 117/253 (46%), Gaps = 23/253 (9%)
Query: 93 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVP 152
+ + N Q+P P I V +GD + V+V N T+HWHG+ Q+ T DGVP
Sbjct: 17 VGKRDFHTFAFNGQVPAPLIHVMEGDDVTVNVTNMT-TLPHTIHWHGMLQRGTWQSDGVP 75
Query: 153 MVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQK---MDGLEGSMIIRTPKTADPHAEL 209
TQ I TF YKF A P+GT +YH HV + + M G+ G +I+ PK P +
Sbjct: 76 HATQHAIEPGDTFTYKFKAEPAGTMWYHCHVNVNEHVTMRGMWGPLIVE-PKNPLPIEKT 134
Query: 210 YDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRVPMHFF 269
D ++++++DW+ S + G D D IN ++ + P
Sbjct: 135 VTKD---YILMLSDWVSSWANKPGEGGIPGDV---FDYYTINAKSFP--ETQP------I 180
Query: 270 KVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVE-PLVVDSVTLFPGDRVDV 328
+V++ +R+IG H Q+ DG ++ P+ D+V + PG+R DV
Sbjct: 181 RVKKGDVIRLRLIGAGDHVHA--IHTHGHISQIAFKDGFPLDKPIKGDTVLIGPGERYDV 238
Query: 329 IIHTNQSNNLYWM 341
I++ + + +
Sbjct: 239 ILNMDNPGL-WMI 250
Score = 53.1 bits (128), Expect = 6e-08
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 392 FKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVE-PLVVDSVTLFP 445
+V++ +R+IG H Q+ DG ++ P+ D+V + P
Sbjct: 180 IRVKKGDVIRLRLIGAGDHVHA--IHTHGHISQIAFKDGFPLDKPIKGDTVLIGP 232
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A
{Metagenomes}
Length = 339
Score = 258 bits (660), Expect = 4e-83
Identities = 78/294 (26%), Positives = 125/294 (42%), Gaps = 28/294 (9%)
Query: 93 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVP 152
A G + + N Q+PGP I V +GD +IV+V N+ T+HWHGV+QK T DGVP
Sbjct: 18 APGLDYKVFGFNGQVPGPLIHVQEGDDVIVNVTNNT-SLPHTIHWHGVHQKGTWRSDGVP 76
Query: 153 MVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQK---MDGLEGSMIIRTPKTADPHAEL 209
VTQ PI + ++ YKF A GT +YH HV + + + G+ G +I+ PK P +
Sbjct: 77 GVTQQPIEAGDSYTYKFKADRIGTLWYHCHVNVNEHVGVRGMWGPLIVD-PKQPLPIEKR 135
Query: 210 YDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRVPMHFF 269
D +++++ W ++ D G T + D +N ++
Sbjct: 136 VTKD---VIMMMSTWESAVADKYGEGGTPMNV---ADYFSVNAKSFPLTQP--------L 181
Query: 270 KVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVE-PLVVDSVTLFPGDRVDV 328
+V++ +R G H + V DG ++ P D+V + PG+R DV
Sbjct: 182 RVKKGDVVKIRFFGAGGGIHA--MHSHGHDMLVTHKDGLPLDSPYYADTVLVSPGERYDV 239
Query: 329 IIHTNQSNNLYWMQAKT------LCDSITAEAVLQYEGEKLTYVSKRPKSDSFP 376
II + + V++Y+G + D P
Sbjct: 240 IIEADNPGRFIFHDHVDTHVTAGGKHPGGPITVIEYDGVPVDDWYVWKDKDYDP 293
Score = 53.2 bits (128), Expect = 7e-08
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 392 FKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVE-PLVVDSVTLFP 445
+V++ +R G H + V DG ++ P D+V + P
Sbjct: 181 LRVKKGDVVKIRFFGAGGGIHA--MHSHGHDMLVTHKDGLPLDSPYYADTVLVSP 233
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus
thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A
2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Length = 439
Score = 196 bits (499), Expect = 4e-58
Identities = 75/402 (18%), Positives = 139/402 (34%), Gaps = 74/402 (18%)
Query: 91 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDG 150
+ G +L+ PGP+++V DT+ + ++N + LHWHG+ ++P +D
Sbjct: 28 LAIAGQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRL-PEPTNLHWHGLP--ISPKVDD 84
Query: 151 VPMVTQCPIPSSTTFRYKFPAM--PSGTFFYHSH----VGLQKMDGLEGSMIIRTPKTAD 204
IP ++ Y+F +GTF+YH H V Q GL G++++ + D
Sbjct: 85 P----FLEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVESS--LD 138
Query: 205 PHAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRV 264
EL + + + ++++ D + D +L+NG P
Sbjct: 139 AIPELREAEEH--LLVLKDLALQGGRPAPHTPMDWMNGKEGDLVLVNGA-LRP------- 188
Query: 265 PMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAV-EPLVVDSVTLFPG 323
Q+ +R++ S A ++ H L +IA+DG + EPL V + L PG
Sbjct: 189 ---TLVAQK-ATLRLRLLNASN-ARYYRLALQDHPLYLIAADGGFLEEPLEVSELLLAPG 243
Query: 324 DRVDVIIHTNQSNNLYWMQAKTLCDSITAEAVLQYEGEKLTYVSKRPKSDSFPRGKPKDN 383
+R +V++ + + +QA + + RP++ +
Sbjct: 244 ERAEVLVRLRKEGR-FLLQALPYDRGAMGMMDMGGMAHAMPQGPSRPETLLYLIAPKNPK 302
Query: 384 SPRVPMHF---------------------------------------FKVQRDKRYLMRI 404
+P K Q + +
Sbjct: 303 PLPLPKALSPFPTLPAPVVTRRLVLTEDMMAARFFINGQVFDHRRVDLKGQAQTVEVWEV 362
Query: 405 IGGSCLACPLIFTIEKHQLQVIASDGTAV-EPLVVDSVTLFP 445
+ P F + H QV++ G D V L
Sbjct: 363 ENQGDMDHP--FHLHVHPFQVLSVGGRPFPYRAWKDVVNLKA 402
Score = 37.1 bits (86), Expect = 0.009
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 10/87 (11%)
Query: 249 LINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGT 308
INGQ + RV K Q + + + P F + H QV++ G
Sbjct: 337 FINGQVFDH----RRVD---LKGQAQTVEVWEVENQGDMDHP--FHLHVHPFQVLSVGGR 387
Query: 309 AV-EPLVVDSVTLFPGDRVDVIIHTNQ 334
D V L G+ +++ +
Sbjct: 388 PFPYRAWKDVVNLKAGEVARLLVPLRE 414
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A
{Pyrobaculum aerophilum}
Length = 448
Score = 165 bits (418), Expect = 3e-46
Identities = 56/311 (18%), Positives = 108/311 (34%), Gaps = 35/311 (11%)
Query: 104 NRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSST 163
+ P+I + +G + + +KN + +HWHG V D P I
Sbjct: 32 AEGVLNPTIILRRGQRVDMTLKNKL-TEPTIVHWHGFD--VNWHNDAHP---SFAITPGE 85
Query: 164 TFRYKFPAM-PSGTFFYHSH----VGLQKMDGLEGSMIIRTPKTADPHAELYDFDLYSHV 218
++ Y F + +GT+ YH H Q G G +I+ Y +
Sbjct: 86 SYNYSFDVVNRAGTYLYHPHPHGLTAKQFYMGQLGLVIVEDS--GSDLGFKYGVND--LP 141
Query: 219 IIVTDWMHSMTDSKFPGNTYNDTR-IKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRY 277
++++D + +A+L+NG ++ FK+ Y
Sbjct: 142 LVISDRRFIGGAPVYNPTPMEMIAGFLGNAVLVNGV-KDA----------VFKLSG-GSY 189
Query: 278 LMRIIGGSCLACPLIFTIEKH-----QLQVIASDGTAV-EPLVVDSVTLFPGDRVDVIIH 331
+R++ GS A + +I K +++IA D + P+ V ++ L P +R +V++
Sbjct: 190 RLRLVNGSN-ARLYMLSIVKKNGDVVPMRLIAVDQGFLARPIEVRALFLAPAERAEVVVE 248
Query: 332 TNQSNNLYWMQAKTLCDSITAEAVLQYEGEKLTYVSKRPKSDSFPRGKPKDNSPRVPMHF 391
+ L + + E Y + P + P
Sbjct: 249 LGEGVYLLKNTPFDPMHLEMGHGMQEALPEGSEYTIATFLVEGKGEAVPVEALSDPPPEP 308
Query: 392 FKVQRDKRYLM 402
K R +R+ +
Sbjct: 309 PKPTRTRRFAL 319
Score = 38.7 bits (90), Expect = 0.003
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 387 VPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKH-----QLQVIASDGTAV-EPLVVDS 440
V FK+ Y +R++ GS A + +I K +++IA D + P+ V +
Sbjct: 177 VKDAVFKLSG-GSYRLRLVNGSN-ARLYMLSIVKKNGDVVPMRLIAVDQGFLARPIEVRA 234
Query: 441 VTLFP 445
+ L P
Sbjct: 235 LFLAP 239
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A
{Arthrobacter SP}
Length = 288
Score = 159 bits (404), Expect = 7e-46
Identities = 51/245 (20%), Positives = 87/245 (35%), Gaps = 34/245 (13%)
Query: 93 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVP 152
A G S N ++PGP++ +GD + + N T+H+HGV++ MDG P
Sbjct: 49 APGIIFKGWSYNGRIPGPTLWAREGDALRIHFTNAG-AHPHTIHFHGVHR---ATMDGTP 104
Query: 153 MVTQCPIPSSTTFRYKFPAMPSGTFFYHSH---VGLQKMDGLEGSMIIRTPKTADPHAEL 209
+ I +F Y+F A P GT YH H + GL G I+ PK P
Sbjct: 105 GIGAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKGLYGGFIVE-PKEGRPP--- 160
Query: 210 YDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRVPMHFF 269
D + V+++ + D + +NG + D
Sbjct: 161 ADDE---MVMVMNGY-------------NTDGGDDNEFYSVNGLPFHFMDFP-------V 197
Query: 270 KVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVI 329
KV++ + + +I F I + + D+++ G R +
Sbjct: 198 KVKQHELVRIHLINVLEYDPINSFHIHGNFFHYYPTGTMLTPSEYTDTISQVQGQRGILE 257
Query: 330 IHTNQ 334
+
Sbjct: 258 LRFPY 262
Score = 32.8 bits (75), Expect = 0.16
Identities = 6/54 (11%), Positives = 16/54 (29%)
Query: 392 FKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFP 445
KV++ + + +I F I + + D+++
Sbjct: 197 VKVKQHELVRIHLINVLEYDPINSFHIHGNFFHYYPTGTMLTPSEYTDTISQVQ 250
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco
metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A
{Myrothecium verrucaria} PDB: 2xll_A*
Length = 534
Score = 157 bits (399), Expect = 5e-43
Identities = 47/256 (18%), Positives = 90/256 (35%), Gaps = 36/256 (14%)
Query: 94 DGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM 153
D ++ + PGP+ QV +G +V N+ + ++H HG + DG
Sbjct: 53 DLGSADLVGYDGMSPGPTFQVPRGVETVVRFINNA-EAPNSVHLHGSF--SRAAFDGWA- 108
Query: 154 VTQCPIPSSTTFRYKFP-AMPSGTFFYHSH----VGLQKMDGLEGSMIIRTPKTADPHAE 208
+ + Y +P + T +YH H G G ++ P A+
Sbjct: 109 --EDITEPGSFKDYYYPNRQSARTLWYHDHAMHITAENAYRGQAGLYMLTDP--AEDALN 164
Query: 209 LY-DFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRVPMH 267
L + + +I+T ++ + N ++ D I +NGQ P
Sbjct: 165 LPSGYGEFDIPMILTSKQYTANGNLVTTNGELNSFW-GDVIHVNGQ-----------PWP 212
Query: 268 FFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQ-------LQVIASDGTAVE-PLVVDSVT 319
F V+ ++Y R + + + +VIASD +E P +
Sbjct: 213 FKNVEP-RKYRFRFLDAAV-SRSFGLYFADTDAIDTRLPFKVIASDSGLLEHPADTSLLY 270
Query: 320 LFPGDRVDVIIHTNQS 335
+ +R +V+ +
Sbjct: 271 ISMAERYEVVFDFSDY 286
Score = 36.9 bits (85), Expect = 0.011
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 10/67 (14%)
Query: 387 VPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQ-------LQVIASDGTAVE-PLVV 438
P F V+ ++Y R + + + +VIASD +E P
Sbjct: 209 QPWPFKNVEP-RKYRFRFLDAAV-SRSFGLYFADTDAIDTRLPFKVIASDSGLLEHPADT 266
Query: 439 DSVTLFP 445
+ +
Sbjct: 267 SLLYISM 273
Score = 29.2 bits (65), Expect = 3.2
Identities = 17/100 (17%), Positives = 23/100 (23%), Gaps = 14/100 (14%)
Query: 249 LINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGT 308
ING N V +I I +VI+
Sbjct: 362 TINGVAFADVQNRL-----LANVPVGTVERWELINAG-NGWTHPIHIHLVDFKVISRTSG 415
Query: 309 -------AVEPLVVDSVTLFPGDRVDVIIHTNQSNNLYWM 341
E + D V L + V V H +M
Sbjct: 416 NNARTVMPYESGLKDVVWLGRRETVVVEAHY-APFPGVYM 454
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous
oxidase; 1.95A {Campylobacter jejuni subsp}
Length = 481
Score = 152 bits (386), Expect = 2e-41
Identities = 66/247 (26%), Positives = 109/247 (44%), Gaps = 37/247 (14%)
Query: 93 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVP 152
G + + N +P P I+V +GD + + VKN + T+HWHGV V P DG P
Sbjct: 65 IKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKL-KEATTIHWHGVP--VPPDQDGSP 121
Query: 153 MVTQCPIPSSTTFRYKF--PAMPSGTFFYHSH----VGLQKMDGLEGSMIIRTPKTADPH 206
PI + Y+F P +GT++YH H Q GL G+ +I+ D
Sbjct: 122 ---HDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAK--KDAL 176
Query: 207 AELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTR--IKPDAILINGQNQNPKDNSPRV 264
+ L + ++++D +++ P N ND + + +LINGQ PK
Sbjct: 177 SHLKEK-----DLMISDLRL-DENAQIPNNNLNDWLNGREGEFVLINGQ-FKPK------ 223
Query: 265 PMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVE-PLVVDSVTLFPG 323
K+ +RI + A L I+ + ++ +DG +E + + + L P
Sbjct: 224 ----IKLAT--NERIRIYNAT-AARYLNLRIQGAKFILVGTDGGLIEKTIYKEELFLSPA 276
Query: 324 DRVDVII 330
RV+V+I
Sbjct: 277 SRVEVLI 283
Score = 33.8 bits (77), Expect = 0.10
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 393 KVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVE-PLVVDSVTLFP 445
K++ +RI + A L I+ + ++ +DG +E + + + L P
Sbjct: 223 KIKLATNERIRIYNAT-AARYLNLRIQGAKFILVGTDGGLIEKTIYKEELFLSP 275
Score = 33.4 bits (76), Expect = 0.16
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 9/82 (10%)
Query: 110 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVY-QKVTPWMDGVPMVTQCP-------IPS 161
+ G V N + H HG + ++ ++G + +
Sbjct: 385 IDLSSKLGVVEDWIVINKS-HMDHPFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRP 443
Query: 162 STTFRYKFPAMPSGTFFYHSHV 183
+ R + G YH H+
Sbjct: 444 NEELRLRMKQDFKGLRMYHCHI 465
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase,
oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A
2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A
3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A
3uac_A 3uab_A 3uae_A 3nsy_A ...
Length = 488
Score = 143 bits (363), Expect = 3e-38
Identities = 59/252 (23%), Positives = 93/252 (36%), Gaps = 27/252 (10%)
Query: 87 RKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTP 146
G T G N L GP++++ +G + VD+ N + E TLHWHG+ V
Sbjct: 25 GAGQSTFGGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQL-TEETTLHWHGLE--VPG 81
Query: 147 WMDGVPMVTQCPIPSSTTFRYKFPAM-PSGTFFYHSH----VGLQKMDGLEGSMIIRTPK 201
+DG P Q IP P+ T ++H H G Q GL G ++I
Sbjct: 82 EVDGGP---QGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIE-DD 137
Query: 202 TADPHAELYDFDLYSHVIIVTDW-MHSMTDSKFPGNTYNDTRIKP-DAILINGQNQNPKD 259
+ + +IV D + + + D +L NG
Sbjct: 138 EILKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGA------ 191
Query: 260 NSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAV-EPLVVDSV 318
R +R++ G T + L VIASDG + EP+ V +
Sbjct: 192 -----IYPQHAAPRG-WLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSEL 245
Query: 319 TLFPGDRVDVII 330
+ G+R +V++
Sbjct: 246 PVLMGERFEVLV 257
Score = 33.0 bits (75), Expect = 0.18
Identities = 20/108 (18%), Positives = 30/108 (27%), Gaps = 21/108 (19%)
Query: 103 INRQ---LPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKV------------TPW 147
IN Q + P KG + H HG ++ W
Sbjct: 382 INGQAFDMNKPMFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGW 441
Query: 148 MDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSM 195
D V + S ++ A + H H+ L+ D G M
Sbjct: 442 KDTVKVE---GNVSEVLVKFNHDAPKEHAYMAHCHL-LEHEDT--GMM 483
Score = 28.8 bits (64), Expect = 4.2
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 399 RYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAV-EPLVVDSVTLFP 445
+R++ G T + L VIASDG + EP+ V + +
Sbjct: 202 WLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLM 249
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like,
FTS mutant suppressor; 1.90A {Escherichia coli} PDB:
2uxv_A
Length = 451
Score = 137 bits (346), Expect = 4e-36
Identities = 57/334 (17%), Positives = 121/334 (36%), Gaps = 38/334 (11%)
Query: 93 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVP 152
G ++ IN + GP+I+V KGD + + N + V++ G+ V + G P
Sbjct: 33 TPGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNR-LTENVSMTVAGLQ--VPGPLMGGP 89
Query: 153 MVTQCPIPSSTTFRYKFPAM-PSGTFFYHSH----VGLQKMDGLEGSMIIRTPKTADPHA 207
+ + + P + T +YH++ Q +GL G ++ D +
Sbjct: 90 ---ARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVE-----DEVS 141
Query: 208 ELYDFD----LYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPR 263
+ + +I+ D + + + D +L+NG Q+P
Sbjct: 142 KSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYNEPGSGGFV-GDTLLVNGV-QSP------ 193
Query: 264 VPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVE-PLVVDSVTLFP 322
+ +V R +R++ S + + L VI+ D + P+ V ++L P
Sbjct: 194 ----YVEVSRG-WVRLRLLNASNSRRYQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLAP 248
Query: 323 GDRVDVIIHTNQSNNLYWMQAKTLCDSITAEAVLQYEGEKLTYVSKRPKSDSFPRGKPKD 382
G+R ++++ + + + T ++ + ++ E + + P G
Sbjct: 249 GERREILVDMSNGDEVSI----TCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPL 304
Query: 383 NSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIF 416
+ +PM + +R S P I
Sbjct: 305 VTDSLPMRLLPTEIMAGSPIRSRDISLGDDPGIN 338
Score = 33.0 bits (75), Expect = 0.19
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 391 FFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVE-PLVVDSVTLFP 445
+ +V R +R++ S + + L VI+ D + P+ V ++L P
Sbjct: 194 YVEVSRG-WVRLRLLNASNSRRYQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLAP 248
Score = 32.7 bits (74), Expect = 0.23
Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 16/107 (14%)
Query: 110 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKV-------TPWMDGVPMVTQCPIPSS 162
+ +G V+ H GV ++ D T
Sbjct: 347 IDVTAQQGTWERWTVRADE---PQAFHIEGVMFQIRNVNGAMPFPEDRGWKDTVWVDGQV 403
Query: 163 T-TFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSM--IIRTPKTADPH 206
+ P+ F+++S L+ D GS+ ++ P H
Sbjct: 404 ELLVYFGQPSWAHFPFYFNSQT-LEMADR--GSIGQLLVNPVPRSHH 447
>3kw8_A Laccase, putative copper oxidase; two-domain laccase,
oxidoreductase, multicopper blue protein; HET: PG4 PGE;
2.29A {Streptomyces coelicolor}
Length = 276
Score = 119 bits (300), Expect = 5e-31
Identities = 43/271 (15%), Positives = 75/271 (27%), Gaps = 63/271 (23%)
Query: 91 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDG 150
+ +PGP I+V +GDT+ ++ N M D +LH HG+ DG
Sbjct: 17 LADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTM-DVRASLHVHGL--DYEISSDG 73
Query: 151 VPMVTQCPIPSSTTFRYKFPA-------------MPSGTFFYHSHVGLQKM------DGL 191
+ + + T Y + +G + YH HV + +GL
Sbjct: 74 TA-MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGL 132
Query: 192 EGSMIIRTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILIN 251
G +I+R P A + +++ P + D + I
Sbjct: 133 YGPVIVRRKGDVLPDAT-----------HTIVFNDMTINNRKPHTGPDFEATVGDRVEIV 181
Query: 252 GQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVE 311
++ + H + R
Sbjct: 182 MITHGEYYHTFHMHGHRWADNRTGILTGPD----------------------------DP 213
Query: 312 PLVVDSVTLFPGDRVDVIIHTNQSNNL-YWM 341
V+D+ P D I + WM
Sbjct: 214 SRVIDNKITGPADSFGFQIIAGEGVGAGAWM 244
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase,
sporulation, COTA- LAC copper centre; 1.60A {Bacillus
subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A
1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A
2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A
4ako_A
Length = 513
Score = 122 bits (308), Expect = 1e-30
Identities = 62/346 (17%), Positives = 120/346 (34%), Gaps = 62/346 (17%)
Query: 94 DGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHM---------------------IDRE 132
D + N PGP+I+V + + + V N++ + +
Sbjct: 42 DLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVK 101
Query: 133 VTLHWHGVYQKVTPWMDGVP--MVTQCPIPSSTTFR---YKFPAM-PSGTFFYHSH---- 182
+H HG DG P ++ + F+ Y +P +YH H
Sbjct: 102 TVVHLHGGV--TPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMAL 159
Query: 183 VGLQKMDGLEGSMIIRTPKTADPHAELYDFDLYSHVIIVTDW-------MHSMTDSKFPG 235
L GL G+ II PK ++D +++TD + + + P
Sbjct: 160 TRLNVYAGLVGAYIIHDPKEKRLKLPSDEYD---VPLLITDRTINEDGSLFYPSAPENPS 216
Query: 236 NTYNDTRIKP----DAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPL 291
+ + I P + IL+NG+ P + +V+ ++Y R+I S
Sbjct: 217 PSLPNPSIVPAFCGETILVNGK-VWP----------YLEVEP-RKYRFRVINASNTRTYN 264
Query: 292 IFTIEKHQLQVIASDGTAV-EPLVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTLCDSI 350
+ I SDG + + ++S +L P +R D+II + A +
Sbjct: 265 LSLDNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIIIDFTAYEGESIILANSA--GC 322
Query: 351 TAEAVLQYEGEKLTYVSKRPKSDSFPRGKPKDNSPRVPMHFFKVQR 396
+ + + + + +P + KPK + + ++Q
Sbjct: 323 GGDVNPETDANIMQFRVTKPLAQKDESRKPKYLASYPSVQHERIQN 368
Score = 30.8 bits (69), Expect = 0.99
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 391 FFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAV-EPLVVDSVTLFP 445
+ +V+ ++Y R+I S + I SDG + + ++S +L P
Sbjct: 242 YLEVEP-RKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNSFSLAP 296
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A
{Streptomyces coelicolor}
Length = 343
Score = 117 bits (294), Expect = 9e-30
Identities = 44/271 (16%), Positives = 75/271 (27%), Gaps = 63/271 (23%)
Query: 91 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDG 150
+ +PGP I+V +GDT+ ++ N M D +LH HG+ DG
Sbjct: 58 LADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTM-DVRASLHVHGL--DYEISSDG 114
Query: 151 VPMVTQCPIPSSTTFRYKFPA-------------MPSGTFFYHSHVGLQKMD------GL 191
+ + + T Y + +G + YH HV + GL
Sbjct: 115 TA-MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGL 173
Query: 192 EGSMIIRTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILIN 251
G +I+R L D + +++ P + D + I
Sbjct: 174 YGPVIVR-----RKGDVLPDAT------HTIVFNDMTINNRKPHTGPDFEATVGDRVEIV 222
Query: 252 GQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVE 311
++ + H + R G
Sbjct: 223 MITHGEYYHTFHMHGHRWADNRTGIL----------------------------TGPDDP 254
Query: 312 PLVVDSVTLFPGDRVDVIIHTNQSNNL-YWM 341
V+D+ P D I + WM
Sbjct: 255 SRVIDNKITGPADSFGFQIIAGEGVGAGAWM 285
Score = 29.3 bits (65), Expect = 2.6
Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 12/108 (11%)
Query: 114 VCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSST-------TFR 166
GD + + + H + T H HG + +F
Sbjct: 213 ATVGDRVEIVMITHG-EYYHTFHMHGHRWADN-RTGILTGPDDPSRVIDNKITGPADSFG 270
Query: 167 YKFPAM---PSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYD 211
++ A +G + YH HV G+ G +++ P P E ++
Sbjct: 271 FQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIPGYEPHE 318
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3
Length = 306
Score = 114 bits (285), Expect = 8e-29
Identities = 36/244 (14%), Positives = 68/244 (27%), Gaps = 50/244 (20%)
Query: 107 LPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM--------VTQCP 158
L GP++ GD + V KN + +++H G+ + + +G
Sbjct: 57 LLGPTLYAEVGDIMKVHFKNKA-HKPLSIHAQGIK--YSKFSEGASYSDHTLPMEKMDDA 113
Query: 159 IPSSTTFRYKFPA----------MPSGTFFYHSHVGL--QKMDGLEGSMIIRTPKTADPH 206
+ + Y++ P T Y+S+V L GL G ++I T
Sbjct: 114 VAPGQEYTYEWIISEHSGPTHDDPPCLTHIYYSYVNLVEDFNSGLIGPLLICKKGTLTED 173
Query: 207 AELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRVPM 266
F+ HV++ + S + ++ Y M
Sbjct: 174 GTQKMFE-KQHVLMFAVFDESKSWNQTSSLMYTVNGYVNG------------------TM 214
Query: 267 HFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRV 326
V +IG S L+ + ++TL
Sbjct: 215 PDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLE--------QNHHKISAITLVSATST 266
Query: 327 DVII 330
+
Sbjct: 267 TANM 270
Score = 37.4 bits (86), Expect = 0.006
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 110 PSIQVCKGDTIIVDVKNHMIDRE-VTLHWHGVYQKVTP-WMDGVPMVTQCPIPSSTTFRY 167
P I VC D I + E ++H++G + + + + S+T+
Sbjct: 215 PDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQNHHKISAIT------LVSATSTTA 268
Query: 168 KFPAMPSGTFFYHSHVGLQKMDGLEGSMIIR 198
P G + S + G++ + I+
Sbjct: 269 NMTVSPEGRWTIASLIPRHFQAGMQAYIDIK 299
>2zoo_A Probable nitrite reductase; electron transfer, electron transport,
heme, iron, binding, oxidoreductase, transport; HET: SUC
HEM; 1.95A {Pseudoalteromonas haloplanktis}
Length = 442
Score = 115 bits (289), Expect = 2e-28
Identities = 44/257 (17%), Positives = 81/257 (31%), Gaps = 44/257 (17%)
Query: 93 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHM-IDREVTLHWHGVYQKVTPWMDGV 151
ADG E S +PG I+V +GD I ++ NH + H V
Sbjct: 43 ADGVEYVFWSFGETVPGSFIRVREGDEIEFNLSNHPSSKMPHNIDLHAV-------TGPG 95
Query: 152 PMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH---VGLQKMDGLEGSMIIRTPKTADPHAE 208
T + F A+ G + YH VG+ +G+ G +++ PK
Sbjct: 96 GGAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIANGMYGLILVE-PKEGLAP-- 152
Query: 209 LYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDT----RIKPDAILINGQNQNPKDNSP-- 262
D + Y ++ D+ ++ + G D D ++ NG + D +
Sbjct: 153 -VDREYY---LVQGDF-YTKGEFGEAGLQPFDMAKAIDEDADYVVFNGSVGSTTDENSLT 207
Query: 263 -----RVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDS 317
V ++ + +IG + +G +++ V +
Sbjct: 208 AKVGETVRLYIGNGGPNLVSSFHVIG--------------EIFDTVYVEGGSLKNHNVQT 253
Query: 318 VTLFPGDRVDVIIHTNQ 334
+ G V
Sbjct: 254 TLIPAGGAAIVEFKVEV 270
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_A*
Length = 742
Score = 116 bits (291), Expect = 4e-28
Identities = 44/263 (16%), Positives = 78/263 (29%), Gaps = 30/263 (11%)
Query: 92 TADGF-ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQ----KVTP 146
T + F R + + GP + GDT+++ KN R ++ HG+
Sbjct: 433 TDETFKTREAIQHESGILGPLLYGEVGDTLLIIFKNQA-SRPYNIYPHGITDVRPLYSRR 491
Query: 147 WMDGVPMVTQCPIPSSTTFRYKFPA----------MPSGTFFYHSHV--GLQKMDGLEGS 194
GV + PI F+YK+ T +Y S V GL G
Sbjct: 492 LPKGVKHLKDFPILPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFVNMERDLASGLIGP 551
Query: 195 MIIRTPKTADPHAELYDFDLYSHVIIVTDW---MHSMTDSKFPGNTYNDTRIKPDAILIN 251
++I ++ D D +VI+ + + N ++ +
Sbjct: 552 LLICYKESVDQRGNQIMSD-KRNVILFSVFDENRSWYLTENIQRFLPNPAGVQLEDPEFQ 610
Query: 252 GQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVE 311
N N V + I+ L + + +
Sbjct: 611 ASNIMHSINGYVFDSLQLSVCLHEVAYWYILSIGAQTDFLSVFFSGYTFK--------HK 662
Query: 312 PLVVDSVTLFPGDRVDVIIHTNQ 334
+ D++TLFP V +
Sbjct: 663 MVYEDTLTLFPFSGETVFMSMEN 685
Score = 104 bits (260), Expect = 3e-24
Identities = 40/249 (16%), Positives = 67/249 (26%), Gaps = 38/249 (15%)
Query: 107 LPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKV----TPWMDGVPMVTQC--PIP 160
L GP+IQ DT+++ +KN V+LH GV + D + +
Sbjct: 72 LLGPTIQAEVYDTVVITLKNMA-SHPVSLHAVGVSYWKASEGAEYDDQTSQREKEDDKVF 130
Query: 161 SSTTFRYKFPA----------MPSGTFFYHSHVGL--QKMDGLEGSMIIRTPKTADPHAE 208
+ Y + T+ Y SHV L GL G++++ +
Sbjct: 131 PGGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLVCREGSLAKEKT 190
Query: 209 LYDFD---LYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRVP 265
L++ W +S R P +NG
Sbjct: 191 QTLHKFILLFAVFDEGKSWHSETKNSLMQDRDAASARAWPKMHTVNGYVNR--------S 242
Query: 266 MHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDR 325
+ K +IG +E H V S+ + P
Sbjct: 243 LPGLIGCHRKSVYWHVIGMGTTPEVHSIFLEGHTFLVRNHR--------QASLEISPITF 294
Query: 326 VDVIIHTNQ 334
+
Sbjct: 295 LTAQTLLMD 303
Score = 41.5 bits (96), Expect = 4e-04
Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 6/129 (4%)
Query: 110 PSIQVCKGDTIIVDVKNHMIDREV-TLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYK 168
P + C ++ V EV ++ G V I T +
Sbjct: 244 PGLIGCHRKSVYWHVIGMGTTPEVHSIFLEGHTFLVRNHRQASL-----EISPITFLTAQ 298
Query: 169 FPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDLYSHVIIVTDWMHSM 228
M G F H+ + DG+E + + + + + + +TD +
Sbjct: 299 TLLMDLGQFLLFCHISSHQHDGMEAYVKVDSCPEEPQLRMKNNEEAEDYDDDLTDSEMDV 358
Query: 229 TDSKFPGNT 237
+
Sbjct: 359 VRFDDDNSP 367
Score = 33.1 bits (74), Expect = 0.21
Identities = 9/119 (7%), Positives = 31/119 (26%), Gaps = 8/119 (6%)
Query: 104 NRQLPGPSIQVCKGDTIIVDVKN-HMIDREVTLHWHGVYQKVTP-WMDGVPMVTQCPIPS 161
+ VC + + + +++ + G K + D + +
Sbjct: 620 GYVFDSLQLSVCLHEVAYWYILSIGAQTDFLSVFFSGYTFKHKMVYEDTLT------LFP 673
Query: 162 STTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDLYSHVII 220
+ G + H + G+ + + + ++ S ++
Sbjct: 674 FSGETVFMSMENPGLWILGCHNSDFRNRGMTALLKVSSCDKNTGDYYEDSYEDISAYLL 732
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper
transport, copper, transport, polymorphism, glycoprotein,
multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens}
SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1kcw_A*
Length = 1065
Score = 112 bits (280), Expect = 1e-26
Identities = 35/250 (14%), Positives = 62/250 (24%), Gaps = 28/250 (11%)
Query: 97 ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQ 156
ER + + GP + GD + + KN R ++H HGV T
Sbjct: 797 ERKAEEEHLGILGPQLHADVGDKVKIIFKNMA-TRPYSIHAHGVQ---------TESSTV 846
Query: 157 CPIPSSTTFRYKFPA----------MPSGTFFYHSHV--GLQKMDGLEGSMIIRTPKTAD 204
P T Y + + Y+S V GL G +I+
Sbjct: 847 TPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIVCRRPYLK 906
Query: 205 PHAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRV 264
+ ++ + D + + ++ D N+ N
Sbjct: 907 VFNPRRKLEFALLFLVFDENESWYLDDNIKTYSDHPEKVNKDDEEFIESNKMHAINGRMF 966
Query: 265 PMHF-FKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPG 323
+ ++G H Q D +FPG
Sbjct: 967 GNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRG-----VYSSDVFDIFPG 1021
Query: 324 DRVDVIIHTN 333
+ +
Sbjct: 1022 TYQTLEMFPR 1031
Score = 109 bits (273), Expect = 1e-25
Identities = 41/261 (15%), Positives = 68/261 (26%), Gaps = 53/261 (20%)
Query: 106 QLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM--------VTQC 157
GP I+ GD + V +KN R T H HG+ +G
Sbjct: 91 GFLGPIIKAETGDKVYVHLKNLA-SRPYTFHSHGIT--YYKEHEGAIYPDNTTDFQRADD 147
Query: 158 PIPSSTTFRYKFPAMPSG----------TFFYHSHVGL--QKMDGLEGSMIIRTPKTADP 205
+ + Y A T YHSH+ GL G +II + D
Sbjct: 148 KVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDK 207
Query: 206 HAE----------LYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQ 255
E D + + ++ + D + +NG
Sbjct: 208 EKEKHIDREFVVMFSVVDENFSWYLEDNIKTYCSEPEKVDKDNEDFQQSNRMYSVNGYTF 267
Query: 256 NPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVE--PL 313
+ + R + G + + G A+
Sbjct: 268 GSLSG--------LSMCAEDRVKWYLFGMG----------NEVDVHAAFFHGQALTNKNY 309
Query: 314 VVDSVTLFPGDRVDVIIHTNQ 334
+D++ LFP D +
Sbjct: 310 RIDTINLFPATLFDAYMVAQN 330
Score = 91.2 bits (225), Expect = 1e-19
Identities = 38/256 (14%), Positives = 65/256 (25%), Gaps = 34/256 (13%)
Query: 104 NRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGV----------YQKVTPWMDGVPM 153
+ + GP I GDTI V N +++ GV Y
Sbjct: 445 HLGILGPVIWAEVGDTIRVTFHNKG-AYPLSIEPIGVRFNKNNEGTYYSPNYNPQSRSVP 503
Query: 154 VTQCPIPSSTTFRYKFPAMPSG----------TFFYHSHVGLQK--MDGLEGSMIIRTPK 201
+ + + TF Y++ Y+S V K GL G M I
Sbjct: 504 PSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKDIFTGLIGPMKICKKG 563
Query: 202 TADPHAELYDFD-LYSHVIIVTDWMHSMTDSKF--PGNTYNDTRIKPDAILINGQNQNPK 258
+ + D D + V D S+ T D K D +
Sbjct: 564 SLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMFTTAPDQVDKEDEDFQESNKMHSM 623
Query: 259 DNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSV 318
+ + + + + A + D+
Sbjct: 624 NGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGER--------RDTA 675
Query: 319 TLFPGDRVDVIIHTNQ 334
LFP + + + +
Sbjct: 676 NLFPQTSLTLHMWPDT 691
Score = 46.1 bits (108), Expect = 2e-05
Identities = 24/244 (9%), Positives = 65/244 (26%), Gaps = 6/244 (2%)
Query: 24 PNDVASGRYDNMSTAEAEKNNLCARPCDNAKPLVCYYSFTLENYATVGPACADCLKGNQK 83
D+ +G M + + R D K + + EN + +
Sbjct: 546 TKDIFTGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMFTTAPD 605
Query: 84 ACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNH-MIDREVTLHWHGVYQ 142
++ + + ++ P + +CKGD+++ + + +++ G
Sbjct: 606 QVDKEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGN-- 663
Query: 143 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKT 202
T G + T+ GTF G++ + +
Sbjct: 664 --TYLWRGER-RDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRR 720
Query: 203 ADPHAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSP 262
+ Y + ++ V ++ ++ ++
Sbjct: 721 QSEDSTFYLGERTYYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAFLDKGEFYIGSKYK 780
Query: 263 RVPM 266
+V
Sbjct: 781 KVVY 784
Score = 39.9 bits (92), Expect = 0.002
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 3/97 (3%)
Query: 110 PSIQVCKGDTIIVDVKNHMIDREV-TLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYK 168
+ + GD + + + ++ T+H+HG + GV I T +
Sbjct: 970 QGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKH--RGVYSSDVFDIFPGTYQTLE 1027
Query: 169 FPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADP 205
G + H HV G+E + + +
Sbjct: 1028 MFPRTPGIWLLHCHVTDHIHAGMETTYTVLQNEDTKS 1064
Score = 38.0 bits (87), Expect = 0.006
Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 6/111 (5%)
Query: 110 PSIQVCKGDTIIVDVKNHMIDREV-TLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYK 168
+ +C D + + + +V +HG Q +T + + P T F
Sbjct: 271 SGLSMCAEDRVKWYLFGMGNEVDVHAAFFHG--QALTNKNYRIDTINLFPA---TLFDAY 325
Query: 169 FPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDLYSHVI 219
A G + GL+ ++ + + + + I
Sbjct: 326 MVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKSSSKDNIRGKHVRHYYI 376
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-],
oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP:
b.6.1.3 b.6.1.3 PDB: 1kbw_A
Length = 327
Score = 102 bits (255), Expect = 2e-24
Identities = 44/256 (17%), Positives = 80/256 (31%), Gaps = 42/256 (16%)
Query: 93 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVP 152
DG E + + +PG I+V +GDT+ V+ N+ H +
Sbjct: 53 DDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNN--PSSTVPHNVDFHAA----TGQGG 106
Query: 153 MVTQCPIPSSTTFRYKFPAMPSGTFFYHSH---VGLQKMDGLEGSMIIRTPKTADPHAEL 209
T + F A+ G + YH VG+ +G+ G +++ PK P
Sbjct: 107 GAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVE-PKEGLPK--- 162
Query: 210 YDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDT----RIKPDAILINGQNQNPKDNSP--- 262
D + Y I+ D+ + G D +P+ ++ NG ++
Sbjct: 163 VDKEFY---IVQGDFY-TKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGALTGDNALKA 218
Query: 263 ----RVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSV 318
V M+ + +IG + +G + V S
Sbjct: 219 KAGETVRMYVGNGGPNLVSSFHVIG--------------EIFDKVYVEGGKLINENVQST 264
Query: 319 TLFPGDRVDVIIHTNQ 334
+ G V +
Sbjct: 265 IVPAGGSAIVEFKVDI 280
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification,
oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Length = 447
Score = 102 bits (255), Expect = 7e-24
Identities = 46/254 (18%), Positives = 87/254 (34%), Gaps = 36/254 (14%)
Query: 93 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHM-IDREVTLHWHGVYQKVTPWMDGV 151
D + N ++PGP ++V GDT+ + +KNH ++ +HG G
Sbjct: 178 DDNTTYTYWTFNGKVPGPFLRVRVGDTVELHLKNHKDSLMVHSVDFHGATG-----PGGA 232
Query: 152 PMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH---VGLQKMDGLEGSMIIRTPKTADPHAE 208
TQ F A+ G + YH V +G+ G +++ P+ P +
Sbjct: 233 AAFTQ--TDPGEETVVTFKALIPGIYVYHCATPSVPTHITNGMYGLLLVE-PEGGLPQVD 289
Query: 209 LYDFDLYSHVIIVTDWMHSMTDSKFPGNTYNDT----RIKPDAILINGQ-NQNPKDNSPR 263
+ ++ ++++ G D KP+ L NG + +
Sbjct: 290 REFY-------VMQGEIYTVKSFGTSGEQEMDYEKLINEKPEYFLFNGSVGSLTRSH--- 339
Query: 264 VPMHFFKVQRDKRYLMRII-GGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLF- 321
P+ + + GG F + + S G+ V P ++ T+
Sbjct: 340 -PL---YASVGETVRIFFGVGGPNFTSS--FHVIGEIFDHVYSLGSVVSPPLIGVQTVSV 393
Query: 322 -PGDRVDVIIHTNQ 334
PG V ++
Sbjct: 394 PPGGATIVDFKIDR 407
Score = 59.5 bits (144), Expect = 8e-10
Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 12/105 (11%)
Query: 108 PGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRY 167
P++ V +G+T+ V++ N E H V D + + + +
Sbjct: 53 INPTLVVHEGETVQVNLVNG----EGAQHDVVV--------DQYAARSAIVNGKNASSTF 100
Query: 168 KFPAMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDF 212
F A G F Y+ + + G+EG++ + A+ + D
Sbjct: 101 SFVASKVGEFNYYCSIAGHRQAGMEGNIQVLPGNRAEMKSSGADI 145
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase,
multicopper oxidase, hexamer; 2.30A {Streptomyces
antibioticus} PDB: 3gyr_A
Length = 612
Score = 96.9 bits (240), Expect = 9e-22
Identities = 40/313 (12%), Positives = 81/313 (25%), Gaps = 97/313 (30%)
Query: 94 DGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHM------------------------- 128
+ + Q+PGP+I+V +G + + N +
Sbjct: 49 QLPPTLMWGYDGQVPGPTIEVRRGQRVRIAWTNRIPKGSEYPVTSVEVPLGPPGTPAPNT 108
Query: 129 ---------------IDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPA-M 172
+ H HG DG + ++P
Sbjct: 109 EPGRGGVEPNKDVAALPAWSVTHLHGAQ--TGGGNDGWA---DNAVGFGDAQLSEYPNDH 163
Query: 173 PSGTFFYHSH----VGLQKMDGLEGSMIIRTPKTADPHAELYDFDLYSHVIIVTDWMH-- 226
+ ++YH H M GL G+ ++R + D + +++ D
Sbjct: 164 QATQWWYHDHAMNITRWNVMAGLYGTYLVRDDEEDALGLPSGDRE---IPLLIADRNLDT 220
Query: 227 ---------------SMTDSKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRVPMHFFKV 271
+ S +NG+ P + V
Sbjct: 221 DEDGRLNGRLLHKTVIVQQSNPETGKPVSIPFFGPYTTVNGR-IWP----------YADV 269
Query: 272 QRDKRYLMRIIGGSCLACPLIFTIEKHQ-------LQVIASDGTAVE-------PLVVDS 317
Y +R++ S A + + I SDG + +
Sbjct: 270 DD-GWYRLRLVNASN-ARIYNLVLIDEDDRPVPGVVHQIGSDGGLLPRPVPVDFDDTLPV 327
Query: 318 VTLFPGDRVDVII 330
++ P +R D+++
Sbjct: 328 LSAAPAERFDLLV 340
>2bw4_A Copper-containing nitrite reductase; oxidoreductase,
denitrification, catalysis, enzyme mechanism, nitrate
assimilation; 0.90A {Achromobacter cycloclastes} SCOP:
b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A
1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A*
1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Length = 340
Score = 93.0 bits (231), Expect = 4e-21
Identities = 37/265 (13%), Positives = 74/265 (27%), Gaps = 40/265 (15%)
Query: 91 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPW--- 147
+ +G E ++ N +PGP + V + D + + + N + H + +
Sbjct: 52 IDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINP----DTNTLLHNI-----DFHAA 102
Query: 148 MDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH----VGLQKMDGLEGSMIIRTPKTA 203
+ + +F A G F YH V G+ G++++
Sbjct: 103 TGALGGGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGL 162
Query: 204 DPHAELYDFDLYSHVIIVTDWMHSMTDS------KFPGNTYNDTRIK-----PDAILING 252
+ + D+ ++ + PG Y D P I+ NG
Sbjct: 163 KDEKGQPLTYDKIYYVGEQDFYVPKDEAGNYKKYETPGEAYEDAVKAMRTLTPTHIVFNG 222
Query: 253 Q-NQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVE 311
D++ +R L+ + + + + G
Sbjct: 223 AVGALTGDHA-------LTAAVGERVLVVHSQAN---RDTRPHLIGGHGDYVWATGKFRN 272
Query: 312 PLVVDSVTLF--PGDRVDVIIHTNQ 334
P +D T G Q
Sbjct: 273 PPDLDQETWLIPGGTAGAAFYTFRQ 297
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification;
HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3
b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A
1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A*
2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X*
2jl3_A* ...
Length = 336
Score = 81.7 bits (202), Expect = 3e-17
Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 23/178 (12%)
Query: 91 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDG 150
+ G ++ N +PGP++ V +GD + + + N H V
Sbjct: 46 IDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNP----ATNAMPHNV--DFHGATGA 99
Query: 151 VPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH----VGLQKMDGLEGSMIIRTPK--TAD 204
+ + +F A SGTF YH V + G+ G++++ P+ D
Sbjct: 100 LGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVL-PRDGLKD 158
Query: 205 PHAELYDFDLYSHVIIVTDWMHSMTDSKF-----PGNTYNDT-----RIKPDAILING 252
P + +D + ++ D K+ +Y DT + P I+ NG
Sbjct: 159 PQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNG 216
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3 b.18.1.2 b.18.1.2
Length = 647
Score = 78.7 bits (193), Expect = 9e-16
Identities = 50/258 (19%), Positives = 85/258 (32%), Gaps = 42/258 (16%)
Query: 97 ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQ 156
+ + + GP I+ D I V KN R +LH HG+ +G
Sbjct: 56 PQGEYEEHLGILGPVIRAEVDDVIQVRFKNLA-SRPYSLHAHGL--SYEKSSEGKTYEDD 112
Query: 157 CP--------IPSSTTFRYKFPAMP----------SGTFFYHSHVGL--QKMDGLEGSMI 196
P I + T+ Y + A + Y+S V GL G ++
Sbjct: 113 SPEWFKEDNAIQPNKTYTYVWHATTRSGPENPGSACRAWAYYSAVNPEKDIHSGLIGPLL 172
Query: 197 IRTPKTADPHAE----LYDFDLYSHVIIVTD-WMHSMTDSKFPGNTYNDTRIKPDAILIN 251
I T D + +F L V W + ++ ++ + + IN
Sbjct: 173 ICRKGTLDKETNMPVDMREFVLLFMVFDEKKSWYYDKKPTRSWRRASSEVKNSHEFHAIN 232
Query: 252 GQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKHQLQVIASDGTAVE 311
G N P + M+ + + + +L+ + G I + H Q + +GT
Sbjct: 233 GMI----YNLPGLRMY--EQEWVRLHLLNLGGSR-----DIHVVHFHG-QTLLENGTQQH 280
Query: 312 PLVVDSVTLFPGDRVDVI 329
L V L PG +
Sbjct: 281 QLGV--WPLLPGSFKTLE 296
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating
mechanism, electron oxidoreductase; 1.46A {Rhodobacter
sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A
1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Length = 333
Score = 76.4 bits (188), Expect = 2e-15
Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 24/177 (13%)
Query: 93 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREV-TLHWHGVYQKVTPWMDGV 151
+ ++ + +PGP + V +GD + + + N + + +H +
Sbjct: 47 DEDAYLQAMTFDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFHAA-------TGAL 99
Query: 152 PMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVG-----LQKMDGLEGSMIIRTPKTADPH 206
I +F A +G F YH G + G+ G +++ H
Sbjct: 100 GGGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDH 159
Query: 207 AELYDFDLYSHVIIVTDWMHSMTDSKF------PGNTYNDT-----RIKPDAILING 252
+ I +D + P Y D + P I+ NG
Sbjct: 160 EGKPVRYDTVYYIGESDHYIPKDEDGTYMRFSDPSEGYEDMVAVMDTLIPSHIVFNG 216
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_B*
Length = 770
Score = 59.4 bits (143), Expect = 1e-09
Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 15/117 (12%)
Query: 109 GPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYK 168
GP I+ D I+V +N R + + + + P + + T Y
Sbjct: 198 GPYIRAEVEDNIMVTFRN-QASRPYSFYSSLISYEEDQRQGAEPRKN--FVKPNETKTYF 254
Query: 169 FPAMP----------SGTFFYHSHVGLQK--MDGLEGSMIIRTPKTADPHAELYDFD 213
+ + Y S V L+K GL G +++ T +P
Sbjct: 255 WKVQHHMAPTKDEFDCKAWAYSSDVDLEKDVHSGLIGPLLVCHTNTLNPAHGRQVTV 311
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue
protein, electron transport, metal- binding,
periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB:
1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Length = 154
Score = 44.4 bits (104), Expect = 1e-05
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 13/101 (12%)
Query: 107 LPGPSIQVCKGDTIIVDVKN------HMIDREVTLHWHGVYQKVTPWMDGVPMVTQC--- 157
P++++ G T+ V N H + G V P +D + T
Sbjct: 58 KKNPTLEIPAGATVDVTFINTNKGFGHSF----DITKKGPPYAVMPVIDPIVAGTGFSPV 113
Query: 158 PIPSSTTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMIIR 198
P + +GT++Y + G+ G ++++
Sbjct: 114 PKDGKFGYTDFTWHPTAGTYYYVCQIPGMAATGMFGKIVVK 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.002
Identities = 70/413 (16%), Positives = 117/413 (28%), Gaps = 176/413 (42%)
Query: 2 PTLATLRVGREDADP------DLMKYLQ-PNDVASGRYDNMSTAEAEKNNLCARP--CDN 52
TL+ L DA+ +++++L+ P++ Y L + P C
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY------------LLSIPISC-- 238
Query: 53 AKPLVCYYSFTLENYATVG------PA-CADCLKGNQKACRRKGCVTA---------DGF 96
PL+ +Y P LKG +G VTA + F
Sbjct: 239 --PLIGVIQLA--HYVVTAKLLGFTPGELRSYLKG--ATGHSQGLVTAVAIAETDSWESF 292
Query: 97 ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVY-QKVTPWMDGVPMVT 155
++ I V L + GV + P
Sbjct: 293 FVSVRKA--------ITV--------------------LFFIGVRCYEAYP--------- 315
Query: 156 QCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQK-MDGLEGS---MI-IRTPKTADPHAELY 210
+P S L+ ++ EG M+ I
Sbjct: 316 NTSLPPSI---------------------LEDSLENNEGVPSPMLSISNLTQEQ------ 348
Query: 211 DFDLYSHVIIVTDWMHSMTDSKFPGNTYNDTRIKPDAI-LINGQNQ-----NPKD----- 259
+ +V + T+S P K I L+NG P+
Sbjct: 349 ---VQDYV--------NKTNSHLPAG-------KQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 260 ------------NSPRVPMHFFKVQRDKRYLMRIIGGSCLACPLIFTIEKH-QLQVIASD 306
+ R+P K++ R+L + A P F H L V ASD
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFL-PV------ASP--F----HSHLLVPASD 437
Query: 307 GTAVEPLVVDSVTLFPGD-RVDVIIHTNQSNNLYWMQA---KTLCDSITAEAV 355
+ LV ++V+ D ++ V T ++L + + + D I V
Sbjct: 438 -LINKDLVKNNVSFNAKDIQIPVY-DTFDGSDLRVLSGSISERIVDCIIRLPV 488
Score = 38.5 bits (89), Expect = 0.005
Identities = 49/303 (16%), Positives = 89/303 (29%), Gaps = 110/303 (36%)
Query: 184 GLQK----MDGLEGSMIIRTP-KTADPH-AELYDFDLYSHVIIVTDWMHSMTDSKFPGNT 237
G Q+ MD + S + AD H + Y F + IV + ++T F G
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILD---IVINNPVNLT-IHFGGEK 1680
Query: 238 YNDTRIKPDAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLMRIIGGSCLAC-------P 290
R A++ + D + F ++ P
Sbjct: 1681 GKRIRENYSAMIF----ETIVDGKLKTEKIFKEINEHSTSYT--FRSEKGLLSATQFTQP 1734
Query: 291 LIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNL--YWMQAKTLC- 347
+ +EK + + S G ++ + F G H S L Y A L
Sbjct: 1735 ALTLMEKAAFEDLKSKG------LIPADATFAG-------H---S--LGEY--AA--LAS 1772
Query: 348 --DSITAEAVLQYEGEKLTYVSKRPKSDSFPRGK------PKDNSPRVPMHFFKVQRDKR 399
D ++ E+++ ++ + RG P+D R
Sbjct: 1773 LADVMSIESLV-----EVVFY----------RGMTMQVAVPRDELGR-----------SN 1806
Query: 400 YLM------RIIGGSCLACPLIFTIEK-----------------HQLQVIASDGT--AVE 434
Y M R+ L + +E+ +Q Q +A+ G A++
Sbjct: 1807 YGMIAINPGRVAASFSQEA-LQYVVERVGKRTGWLVEIVNYNVENQ-QYVAA-GDLRALD 1863
Query: 435 PLV 437
+
Sbjct: 1864 TVT 1866
Score = 38.5 bits (89), Expect = 0.005
Identities = 54/293 (18%), Positives = 93/293 (31%), Gaps = 115/293 (39%)
Query: 75 ADCLKGNQK------ACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKN-- 126
D L+ N+ + +T + + + N LP G + + + N
Sbjct: 325 EDSLENNEGVPSPMLSISN---LTQEQVQDYVNKTNSHLPA-------GKQVEISLVNGA 374
Query: 127 -HMIDREVT----------LHWHGVYQKVTPWMDGVPMVTQCPIPSS---TTFRYKF-P- 170
+++ V+ L K +D Q IP S F +F P
Sbjct: 375 KNLV---VSGPPQSLYGLNLTLRKA--KAPSGLD------QSRIPFSERKLKFSNRFLPV 423
Query: 171 AMPSGTFFYHSHVGLQKMDGLEGSMIIRTPKTADPHAELYDFDLYSHVIIVTDWMHSMTD 230
A P +HSH+ L P ++L + DL + + + D
Sbjct: 424 ASP-----FHSHL-------LV------------PASDLINKDLVKNNV---SFNAK--D 454
Query: 231 SKFP-GNTYN--DTR-----IKP---DAILINGQNQNPKDNSPRVPMHFFKVQRDKRYLM 279
+ P +T++ D R I D I+ R+P+ + + K
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCII-------------RLPVKWETTTQFK--AT 499
Query: 280 RII----GGSCLACPLIFTIEKHQLQVIASDGTAVEPLVVDSVTLFPGDRVDV 328
I+ GG+ L H+ + DGT V V+ + TL D
Sbjct: 500 HILDFGPGGASGLGVLT-----HRNK----DGTGVR--VIVAGTLDINPDDDY 541
Score = 33.9 bits (77), Expect = 0.14
Identities = 29/139 (20%), Positives = 44/139 (31%), Gaps = 60/139 (43%)
Query: 304 ASDGTAVEPLVVDSVTLFPGDRVDVIIHTNQSNNL-YW--MQA-----KTLCDSITAEAV 355
+G A LV +F G Q N Y+ ++ L + +
Sbjct: 149 VGEGNA--QLV----AIFGG----------QGNTDDYFEELRDLYQTYHVLVGDLIKFS- 191
Query: 356 LQYEGEKLTYVSKRPKSDS--FPRG--------KPKDNSPRVPMHFFKVQRDKRYLMRII 405
E L+ + + F +G P N+P DK YL+
Sbjct: 192 ----AETLSELIRTTLDAEKVFTQGLNILEWLENP-SNTP-----------DKDYLL--- 232
Query: 406 GGSC-LACPLIFTIEKHQL 423
S ++CPLI I QL
Sbjct: 233 --SIPISCPLIGVI---QL 246
Score = 31.6 bits (71), Expect = 0.75
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 27/97 (27%)
Query: 207 AELYDFDLYSHVIIVTDWMHSMTD--SKFPGNTYNDTRIKPDAILINGQNQNPKDNSPRV 264
+LY Y +V D + + S+ T + ++ + I +NP N+P
Sbjct: 174 RDLYQ--TYHV--LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP-SNTP-- 226
Query: 265 PMHFFKVQRDKRYLMRIIGGSC-LACPLIFTIEKHQL 300
DK YL+ S ++CPLI I QL
Sbjct: 227 ---------DKDYLL-----SIPISCPLIGVI---QL 246
Score = 29.6 bits (66), Expect = 2.5
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 15/63 (23%)
Query: 179 YHSHVG--LQKMDG-LEGSMIIRTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFPG 235
YH VG ++ L +IRT A+ ++ + + +W+ S P
Sbjct: 180 YHVLVGDLIKFSAETLSE--LIRTTLDAEKV--------FTQGLNILEWLE--NPSNTPD 227
Query: 236 NTY 238
Y
Sbjct: 228 KDY 230
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.004
Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 21/132 (15%)
Query: 292 IFTIEKHQLQVIASDGTAVEP--LVVDSVTLFPGDRVDVIIHTNQSNNLYWMQAKTLCDS 349
I + K ++ I AV + ++ + V + N + L
Sbjct: 45 ILS--KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-----LMSP 97
Query: 350 ITAEAVLQYEGEKLTYVSKRPKSDSFPRGKPKDNSPRVPMHFFKVQ------RDKRYL-- 401
I E Q Y+ +R + + + K N R+ + K++ R + +
Sbjct: 98 IKTEQ-RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY-LKLRQALLELRPAKNVLI 155
Query: 402 --MRIIGGSCLA 411
+ G + +A
Sbjct: 156 DGVLGSGKTWVA 167
Score = 38.3 bits (88), Expect = 0.006
Identities = 54/447 (12%), Positives = 115/447 (25%), Gaps = 128/447 (28%)
Query: 74 CADCLKGNQKACRRK-GCVTADGFERAILSINRQL------PGPSIQVCKGDTIIVDVKN 126
D L + A C ++ILS ++ + ++ +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILS-KEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 127 HMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQ 186
M+ + V V + ++ P+ T+ PS T Y Y+ +
Sbjct: 77 EMVQKFV----EEVLRINYKFL-MSPIKTEQRQPSMMTRMYIEQRDR----LYNDNQVFA 127
Query: 187 KMDGLEGSMIIRTPKTADPHAELYDFDLYSHVIIVTDWMHSM-----------------T 229
K + + R L + L ++ + +
Sbjct: 128 KYN------VSRLQPYLKLRQALLE--LRPAKNVL---IDGVLGSGKTWVALDVCLSYKV 176
Query: 230 DSKFPGNTY-----NDTRIKPDAILINGQN---------QNPKDNSPRVPMHFFKVQ-RD 274
K + N P+ +L Q + D+S + + +Q
Sbjct: 177 QCKMDFKIFWLNLKNCNS--PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 275 KRYLMRIIGGSCLACPLIF-------TIEKHQLQ----VIASDGTAVEPLVVDSVTLFPG 323
+R L +CL L+ L + + L + T
Sbjct: 235 RRLLKSKPYENCL---LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 324 DRVDVIIHTNQSNNLY----WMQAKTL----CD------SITAEAV----------LQYE 359
D + + ++ +L + + L SI AE++
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 360 GEKLTYVSKR------PKSDS--------FPRGKPKDNSPRVPMHFFKV--QRDKRYLMR 403
+KLT + + P FP ++ +P + + +
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-----PSAH-IPTILLSLIWFDVIKSDVM 405
Query: 404 IIGGSCLACPLI------FTIEKHQLQ 424
++ L+ TI +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIY 432
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding
protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4
PDB: 1ibz_A 1ic0_A
Length = 112
Score = 31.0 bits (70), Expect = 0.27
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 17/102 (16%)
Query: 97 ERAILSINRQLPGPSIQVCKGDTIIVDVKNH-MIDREVTLHWHGVYQKVTPWMDGVPMVT 155
+ I + N ++ V KGD + V V+N I ++ GV + +
Sbjct: 25 VKNIRAFNVLNEPETLVVKKGDAVKVVVENKSPISEGFSIDAFGVQEVIKA--------- 75
Query: 156 QCPIPSSTTFRYKFPAMPSGTFFYHSHVGLQKMDGLEGSMII 197
T F A +G F + K L G++ +
Sbjct: 76 ------GETKTISFTADKAGAFTIWCQL-HPKNIHLPGTLNV 110
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 30.0 bits (68), Expect = 0.66
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 316 DSVTLFPGDRVDVIIHTNQSNNLYWMQAK 344
V +TN S L W + +
Sbjct: 25 RFAAKKRSSMVKFHCYTNHSGALTWFRKR 53
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.1
Identities = 5/20 (25%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 186 QKMDGLEGSMIIRTPKTADP 205
Q + L+ S+ + +A P
Sbjct: 20 QALKKLQASLKLYADDSA-P 38
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein,
cysteine-rich secretory PROT domain, immune system;
2.20A {Necator americanus}
Length = 424
Score = 28.9 bits (64), Expect = 3.5
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 46 CAR-PCDNAKPLVCYYSFTLENYA-----TVGPACADCLKGNQKACRRKGC 90
CA C++ VC Y NY T+G C+ C G + C
Sbjct: 372 CAVVFCNDFTFGVCQYGPG-GNYMGHVIYTMGQPCSQCSPGATCSVTEGLC 421
>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin,
metal-binding secreted; HET: NAG; 1.50A {Homo sapiens}
PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A*
3d5o_A* 2w08_A*
Length = 204
Score = 28.0 bits (62), Expect = 4.6
Identities = 15/108 (13%), Positives = 30/108 (27%), Gaps = 26/108 (24%)
Query: 137 WHGVYQKVTPWMDGVPMVTQC-----PIPSSTTFRYKFPAMPSGTFFYHSHVGLQKMDGL 191
W W++G P+V + + + G F S Q G
Sbjct: 98 WESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRS----QSFVG- 152
Query: 192 EGSMIIRTPKTADPHAELYDFDLYSHVIIVTDWMHSMTDSKFPGNTYN 239
E+ D ++ V+ + + + + P N +
Sbjct: 153 ----------------EIGDLYMWDSVLPPENILSAYQGTPLPANILD 184
>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus
musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A
1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L
1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C
Length = 113
Score = 27.0 bits (61), Expect = 5.5
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 316 DSVTLFPGDRVDV-------IIHTNQSNNLYWMQAK 344
S+ + G++ + ++H+N + L+W K
Sbjct: 9 LSLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQK 44
>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen
bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1
PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A
1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A*
3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...
Length = 114
Score = 26.7 bits (60), Expect = 6.9
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 8/37 (21%)
Query: 316 DSVTLFPGDRV--------DVIIHTNQSNNLYWMQAK 344
DS+ + G+R V+ +N N L W Q K
Sbjct: 9 DSLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQK 45
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma
factor, cupin fold, zinc bindin transcription factor;
2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Length = 195
Score = 27.3 bits (59), Expect = 9.6
Identities = 16/123 (13%), Positives = 33/123 (26%), Gaps = 2/123 (1%)
Query: 74 CADCLKGNQKACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREV 133
C +C G + + A+ + + + +
Sbjct: 35 CDECRARAGALDAVGGSLMEETAPVALSEGSLASVMAQLDRQIQRPAPARRADPRAPAPL 94
Query: 134 TLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFY-HSHVGLQKMDGLE 192
+ + W V Q +P+ + +P G H H GL+ L+
Sbjct: 95 ADYVGRRLED-VRWRTLGGGVRQAILPTGGEAIARLLWIPGGQAVPDHGHRGLELTLVLQ 153
Query: 193 GSM 195
G+
Sbjct: 154 GAF 156
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.426
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,896,193
Number of extensions: 410402
Number of successful extensions: 1045
Number of sequences better than 10.0: 1
Number of HSP's gapped: 854
Number of HSP's successfully gapped: 91
Length of query: 445
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 348
Effective length of database: 3,993,456
Effective search space: 1389722688
Effective search space used: 1389722688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.8 bits)