BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16563
(259 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|226372878|gb|ACO52064.1| Probable thymidylate kinase 1 [Rana catesbeiana]
Length = 424
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 138/225 (61%), Gaps = 11/225 (4%)
Query: 9 AQYPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDG 68
A Y SL VLS+L+ + +PE E+LL N + + +P+IV EGLD
Sbjct: 188 AVYSSLQDVLSVLRESA-KVIPEAEKLLKCMDLGN--------IPEKGSHPVIVIEGLDA 238
Query: 69 CGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL 128
GKS ++++ + LKA+L +PP SI R+ FD SL++RAYY+L NY+AA DI +
Sbjct: 239 TGKSTLTESLKQHLKATLLRSPPDSISRWRKTFDDETSLIKRAYYALSNYVAAVDIAKAS 298
Query: 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAI 188
+ PV++DRFWHST+AY +A E+ N LPD +Y WP+DL+KPDLVI LTVS+
Sbjct: 299 EVSPVIVDRFWHSTAAYAIATEIGGNIQ-NLPDHHHVVYQWPEDLLKPDLVILLTVSDEE 357
Query: 189 RLQRLSRRK-NFTLEENELKKNAKFRELLTTIYRNMNNPELVFVD 232
R+ R+ +R T EE EL+ N+ FR+ + YR M NP V +D
Sbjct: 358 RIHRIRKRGLQETQEEKELEANSMFRQKVEEAYRRMENPGCVVID 402
>gi|270004399|gb|EFA00847.1| hypothetical protein TcasGA2_TC003748 [Tribolium castaneum]
Length = 211
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 136/205 (66%), Gaps = 2/205 (0%)
Query: 11 YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
Y S SVL++L + + ++ VE LL +Y+ + + + S + +PLI+ EGLDGCG
Sbjct: 7 YRSAESVLNVLNTHKNENVQAVETLLQVYNNALKVSKEKSQDNLTKTHPLIILEGLDGCG 66
Query: 71 KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
KS S+ ++ KL A TPP SI +R+ FD H + LR AYY+LGNYIAA + L++
Sbjct: 67 KSRISRELSSKLSAEKWCTPPESIKHIRDLFDDHPT-LRTAYYALGNYIAALECTAILKQ 125
Query: 131 QPVVMDRFWHSTSAYGMANELVKNSD-LKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIR 189
+PVVMDR+WHST+AY +A + +S ++P E D Y WP+DL++P +VI+L V E +R
Sbjct: 126 KPVVMDRYWHSTAAYAIAQAVYDSSGATEMPPEGDSFYKWPQDLLQPSIVIFLDVDEDVR 185
Query: 190 LQRLSRRKNFTLEENELKKNAKFRE 214
L+RLSRRK T +E+ LK + +FR+
Sbjct: 186 LERLSRRKTTTTQEDLLKNSKQFRD 210
>gi|198431808|ref|XP_002124573.1| PREDICTED: similar to thymidylate kinase family LPS-inducible
member [Ciona intestinalis]
Length = 420
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 141/244 (57%), Gaps = 17/244 (6%)
Query: 11 YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGD----DRKYPLIVFEGL 66
Y V S+L + + S+ EV+EL IY D + + R +P+IV EGL
Sbjct: 181 YHDQARVQSVLDT--FKSMNEVQELKEIY---------DGKMLNIKPLKRDHPIIVIEGL 229
Query: 67 DGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQ 126
D GKS ++ +AK+L + +P ++ LR+ FD+H LLRRAYY++GNY A +
Sbjct: 230 DATGKSTLTENLAKRLNGCARKSPQDCVLHLRKTFDSHFQLLRRAYYAIGNYAFAAQVLH 289
Query: 127 DLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSE 186
D Q PVV DRFWHST+AY +A ++ + LP +YSWP DL+KPD+VI LT+S+
Sbjct: 290 DAQSGPVVCDRFWHSTAAYAIATDVKVGDETHLPPARHWVYSWPPDLLKPDIVILLTISD 349
Query: 187 AIRLQRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDI 245
+R RL R T EE ++K+ FR+ + +Y+ M+NP LV +D S S E N
Sbjct: 350 ELRRCRLEGRNTEKTDEEIRMEKSRLFRQRIAEVYKRMDNPALVELDAS-GSAEELCNKA 408
Query: 246 VELI 249
VEL+
Sbjct: 409 VELL 412
>gi|301611086|ref|XP_002935074.1| PREDICTED: UMP-CMP kinase 2, mitochondrial-like [Xenopus (Silurana)
tropicalis]
Length = 459
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 99/227 (43%), Positives = 133/227 (58%), Gaps = 11/227 (4%)
Query: 17 VLSILKSAQYSSLPEVEELLNIYS-------RINETNDQ-DSGVGDDRKYPLIVFEGLDG 68
L+IL SA Y SL +L S RI E DQ D+G R YP+IV EGLD
Sbjct: 215 ALNILLSAVYYSLSSARTVLQECSACIPEATRILELLDQCDTGTKKGR-YPVIVIEGLDA 273
Query: 69 CGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL 128
GKS ++++ LKA+L +PP I R+ FD SL++RAYY+ GNYI A +I +
Sbjct: 274 TGKSTLTESLRDCLKATLLRSPPDCISKWRKTFDDEPSLIKRAYYAAGNYIGACEIAKAS 333
Query: 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAI 188
PV++DR+WHST+AY +A E+ N LP DIY WP+DL++PDLVI LTVS+
Sbjct: 334 MDSPVIVDRYWHSTAAYAIATEIGGNLP-SLPHCGHDIYQWPQDLLRPDLVILLTVSDEE 392
Query: 189 RLQRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
R+ R+ R T EE EL+ N FR + Y+ + NP+ V +D S
Sbjct: 393 RMLRMRGRGLEETKEEKELESNTMFRLKVEEAYKRIENPQCVIIDAS 439
>gi|351712282|gb|EHB15201.1| UMP-CMP kinase 2, mitochondrial, partial [Heterocephalus glaber]
Length = 232
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 108/159 (67%), Gaps = 2/159 (1%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
K+P+IV EGLD GK+ +++++K+L A L +PPS + R+ FD S++RRA+YSLG
Sbjct: 74 KFPVIVIEGLDATGKTTVTRSISKELGAVLLQSPPSCMGQWRKIFDEEPSIIRRAFYSLG 133
Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
NYI A +I ++ + PV++DR+WHST+ Y +A EL LP + +Y WP+DL++P
Sbjct: 134 NYIVASEIAEESTRSPVIVDRYWHSTATYAIATELSGGLQ-HLPPAHNSVYQWPQDLLRP 192
Query: 177 DLVIYLTVSEAIRLQRLSRRK-NFTLEENELKKNAKFRE 214
DLV+ LTVS R+QRL R T EE+EL+ N+ FR+
Sbjct: 193 DLVVLLTVSPEERMQRLQGRGLEMTREESELEANSIFRQ 231
>gi|410898104|ref|XP_003962538.1| PREDICTED: UMP-CMP kinase 2, mitochondrial-like [Takifugu rubripes]
Length = 416
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 123/227 (54%), Gaps = 9/227 (3%)
Query: 16 SVLSILKSAQYSSLPEVEELLNIYSRIN-------ETNDQDSGVGDDRKYPLIVFEGLDG 68
S L+I+ S + S E E+L S I E +G +P+IV EGLD
Sbjct: 171 STLNIINSDVFYSFEEAREVLKESSDIIPEAASVLELLPSRAGPRGRPDFPVIVIEGLDA 230
Query: 69 CGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL 128
GK+ ++++ L A+L +PP + RE+FD L+RRA+Y+LGNYI A + Q+
Sbjct: 231 TGKTTLTESLKGALGAALLRSPPQCLSPFRERFDQEPPLIRRAFYALGNYITADQVSQEA 290
Query: 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAI 188
K PV++DRFWHST+AY +A V LPDE ++Y WP DL++P LV+ LT+
Sbjct: 291 SKGPVIVDRFWHSTAAYAIATA-VGGPVCNLPDEGSELYRWPSDLLEPTLVVLLTLDPEE 349
Query: 189 RLQRLSRRKNF-TLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
R +RL R T EE +L N FR + YR + P V VD S
Sbjct: 350 RKRRLRDRGLIKTEEEQKLDHNQLFRLKVEQAYRRIVGPVCVTVDAS 396
>gi|297480629|ref|XP_002691535.1| PREDICTED: UMP-CMP kinase 2, mitochondrial [Bos taurus]
gi|296482367|tpg|DAA24482.1| TPA: UMP-CMP kinase 2-like [Bos taurus]
Length = 447
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 134/225 (59%), Gaps = 10/225 (4%)
Query: 11 YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
+P + ++L++ S +PE E+L++ + E + ++P+IV EGLD G
Sbjct: 211 FPHREAACAVLEACT-SFIPEAREVLDLVDQCPEQVQKG-------RFPVIVIEGLDATG 262
Query: 71 KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
K+ +Q+V+ LKA L +PPS I R+ FD +++RRA+YSLGNYI A +I ++ K
Sbjct: 263 KTTVTQSVSDSLKAVLLKSPPSCISQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESTK 322
Query: 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRL 190
PVV+DR+WHST+ Y +A E V LP IY WP+DL+KPDL++ LTVS R+
Sbjct: 323 SPVVVDRYWHSTATYAIATE-VSGGLQHLPPIHHPIYQWPRDLLKPDLILLLTVSPEERM 381
Query: 191 QRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
QR+ R T EE EL+ N+ FR+ + Y+ M NP VD S
Sbjct: 382 QRIEGRGMEKTREEAELETNSIFRQKVEVCYQRMENPGCHVVDAS 426
>gi|297460075|ref|XP_001252651.2| PREDICTED: UMP-CMP kinase 2, mitochondrial [Bos taurus]
Length = 447
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 134/225 (59%), Gaps = 10/225 (4%)
Query: 11 YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
+P + ++L++ S +PE E+L++ + E + ++P+IV EGLD G
Sbjct: 211 FPHREAACAVLEACT-SFIPEAREVLDLVDQCPEQVQKG-------RFPVIVIEGLDATG 262
Query: 71 KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
K+ +Q+V+ LKA L +PPS I R+ FD +++RRA+YSLGNYI A +I ++ K
Sbjct: 263 KTTVTQSVSDSLKAVLLKSPPSCISQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESTK 322
Query: 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRL 190
PVV+DR+WHST+ Y +A E V LP IY WP+DL+KPDL++ LTVS R+
Sbjct: 323 SPVVVDRYWHSTATYAIATE-VSGGLQHLPPIHHPIYQWPRDLLKPDLILLLTVSPEERM 381
Query: 191 QRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
QR+ R T EE EL+ N+ FR+ + Y+ M NP VD S
Sbjct: 382 QRIEGRGMEKTREEAELETNSIFRQKVEVCYQRMENPGCHVVDAS 426
>gi|348531575|ref|XP_003453284.1| PREDICTED: UMP-CMP kinase 2, mitochondrial-like [Oreochromis
niloticus]
Length = 421
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 118/208 (56%), Gaps = 11/208 (5%)
Query: 29 LPEVEELLNIY-SRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLK 87
+PE + +L + SR+ N D +P+IV EGLD GK+ ++++ L A+L
Sbjct: 203 IPEAKAVLELLPSRVEARNKPD--------FPVIVIEGLDATGKTTLTESLKDTLGATLL 254
Query: 88 STPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGM 147
+PP + R +FD L+RRA+Y+LGNYI A I ++ K PV++DRFWHST+AY +
Sbjct: 255 PSPPECLSPWRARFDQEPPLIRRAFYALGNYITADQIGREGMKTPVIVDRFWHSTAAYAI 314
Query: 148 ANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL-SRRKNFTLEENEL 206
A V LP E ++Y WP DL +P LV+ LT+ R +RL +R + T EE EL
Sbjct: 315 ATA-VSGPVCNLPGEGSEVYCWPSDLFQPSLVVLLTLDPEERKRRLRNRGQGKTDEEEEL 373
Query: 207 KKNAKFRELLTTIYRNMNNPELVFVDNS 234
N FR + YR ++ P V VD S
Sbjct: 374 DHNQLFRLRVEEAYRRISGPACVTVDAS 401
>gi|327261283|ref|XP_003215460.1| PREDICTED: UMP-CMP kinase 2, mitochondrial-like [Anolis
carolinensis]
Length = 300
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 118/209 (56%), Gaps = 9/209 (4%)
Query: 27 SSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL 86
SS+PE +L++ D + +P+IV EGLD GK+ + V L A L
Sbjct: 77 SSIPEARSILDLV-------DNCPVHAEKGNFPVIVIEGLDATGKTTVTSAVKDTLNAVL 129
Query: 87 KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYG 146
TPP + R+ FD +L+RRA+Y+L NYI A +I ++ K PV++DR+WHST+AY
Sbjct: 130 LRTPPPCVSQWRKVFDDKPTLIRRAFYALTNYIVASEIAKESVKSPVIVDRYWHSTAAYA 189
Query: 147 MANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQR-LSRRKNFTLEENE 205
+A E + LP +Y WPKDL++PD+V+ LT+S R +R L R T EE E
Sbjct: 190 IATETSGKVE-DLPPPHHPVYCWPKDLLRPDIVLLLTLSSDERSRRLLGRGVEKTREEAE 248
Query: 206 LKKNAKFRELLTTIYRNMNNPELVFVDNS 234
L++N FR+ + YR M NP VD S
Sbjct: 249 LEENRYFRQRVEEAYRRMENPGCQPVDAS 277
>gi|440900353|gb|ELR51507.1| UMP-CMP kinase 2, mitochondrial, partial [Bos grunniens mutus]
Length = 224
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 126/209 (60%), Gaps = 9/209 (4%)
Query: 27 SSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL 86
S +PE E+L++ + E + ++P+IV EGLD GK+ +Q+V+ LKA L
Sbjct: 3 SFIPEAREVLDLVDQCPEQVQKG-------RFPVIVIEGLDATGKTTVTQSVSDSLKAVL 55
Query: 87 KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYG 146
+PPS I R+ FD +++RRA+YSLGNYI A +I ++ K PVV+DR+WHST+ Y
Sbjct: 56 LKSPPSCISQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESTKSPVVVDRYWHSTATYA 115
Query: 147 MANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL-SRRKNFTLEENE 205
+A E V LP IY WP+DL+KPDL++ LTVS R+QR+ R T EE E
Sbjct: 116 IATE-VSGGLQHLPPIHHPIYQWPRDLLKPDLILLLTVSPEERMQRIEGRGMEKTREEAE 174
Query: 206 LKKNAKFRELLTTIYRNMNNPELVFVDNS 234
L+ N+ FR+ + Y+ M NP VD S
Sbjct: 175 LETNSIFRQKVEVCYQRMENPGCHVVDAS 203
>gi|426226231|ref|XP_004007252.1| PREDICTED: UMP-CMP kinase 2, mitochondrial [Ovis aries]
Length = 370
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 134/225 (59%), Gaps = 10/225 (4%)
Query: 11 YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
+P + ++L+ A S +PE ++L++ + E + ++P+IV EGLD G
Sbjct: 136 FPHREAARAVLE-ACTSFIPEARDVLDLVDQCPEQVQKG-------RFPVIVIEGLDATG 187
Query: 71 KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
K+ +Q+V+ LKA L +PPS I R+ FD +++RRA+YSLGNYI A +I ++ K
Sbjct: 188 KTTVTQSVSDSLKAVLLKSPPSCISQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESTK 247
Query: 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRL 190
PV++DR+WHST+ Y +A E V LP IY WP+DL+KPDLV+ LTVS R+
Sbjct: 248 SPVIVDRYWHSTATYAIATE-VSGGLQHLPPVHHPIYQWPRDLLKPDLVLLLTVSPEERM 306
Query: 191 QRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
QR+ R T EE EL+ N+ FR+ + Y+ M NP VD S
Sbjct: 307 QRIEGRGMEKTREEAELETNSIFRQKVEVCYQRMENPGCHVVDAS 351
>gi|334312514|ref|XP_001381291.2| PREDICTED: UMP-CMP kinase 2, mitochondrial-like [Monodelphis
domestica]
Length = 539
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 14/225 (6%)
Query: 11 YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
+PSL V + K S +PE +E+LN+ + + + K+P+I EGLD G
Sbjct: 303 FPSLEEVRKVFKECT-SLIPEAQEVLNLVDKCPKNVQKG-------KFPVIAIEGLDATG 354
Query: 71 KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
K+ + ++AK + A +PP I R+ FD +++RRAYYSLGNYI A +I + +
Sbjct: 355 KTTVTHSIAKTMNAVFLKSPPPCISQWRKIFDNEPAIIRRAYYSLGNYIIASEIAKASTQ 414
Query: 131 QPVVMDRFWHSTSAYGMANELVKNSDLK--LPDEDDDIYSWPKDLMKPDLVIYLTVSEAI 188
PV++DR+WHST+AY +A E+ S L LP IY WPKDL+KPD+++ LT +
Sbjct: 415 APVIVDRYWHSTAAYAIATEI---SGLPHYLPPAHHPIYQWPKDLLKPDIILLLTTTPKE 471
Query: 189 RLQRLSRRKNFTLEENELKK-NAKFRELLTTIYRNMNNPELVFVD 232
R R+ R +E E + N FRE + Y+ M NP VD
Sbjct: 472 RELRIQERGLEKTKEEEELEVNKLFREKVEMSYKRMENPGCHLVD 516
>gi|344280146|ref|XP_003411846.1| PREDICTED: UMP-CMP kinase 2, mitochondrial-like [Loxodonta
africana]
Length = 558
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 141/242 (58%), Gaps = 11/242 (4%)
Query: 11 YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
+PS + ++L+ A S +PEV+ +L++ DQ K+P+I EGLD G
Sbjct: 324 FPSREAARAVLE-ACTSFIPEVQAVLDLV-------DQCPKQIQKGKFPVIAIEGLDATG 375
Query: 71 KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
K+ +Q V+ LKA L +PPS + R+ FD +++RRA+YSLGNYI A +I ++ +
Sbjct: 376 KTTVTQAVSDSLKAVLLKSPPSCVAQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESTQ 435
Query: 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRL 190
PVV+DR+WHST+ Y +A E + LP IY WPKDL+KPDLV+ LTVS R+
Sbjct: 436 SPVVVDRYWHSTATYALATE-ISGGLQHLPPAHHHIYQWPKDLLKPDLVLLLTVSPEERM 494
Query: 191 QRLSRRK-NFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
+R++RR T EE EL+ N FR+ + Y+ M +P +D S S + ++ LI
Sbjct: 495 RRIARRGMEKTREEVELEANNVFRQKVEVSYQRMEDPSCHVIDAS-PSREKVLQTVLSLI 553
Query: 250 HN 251
N
Sbjct: 554 KN 555
>gi|432100613|gb|ELK29141.1| UMP-CMP kinase 2, mitochondrial [Myotis davidii]
Length = 221
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 109/178 (61%), Gaps = 2/178 (1%)
Query: 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGN 117
+P+IV EGLD GK+ +Q VA L+A+L +PP+ I R+ FD +++RRA+YSLGN
Sbjct: 23 FPVIVIEGLDATGKTTVTQAVAGALQAALLKSPPACISQWRQAFDDEPAIIRRAFYSLGN 82
Query: 118 YIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPD 177
YI A +I Q + PVV+DR+WHST+AY +A E V + LP +Y WPKDL+KPD
Sbjct: 83 YIVASEIAQASARSPVVVDRYWHSTAAYAIATE-VSGAVQHLPPAHHPVYQWPKDLLKPD 141
Query: 178 LVIYLTVSE-AIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
LV+ LTVS + R T EE EL+ N+ FR+ + Y M +P VD S
Sbjct: 142 LVVLLTVSPEERLRRIRGRGLERTSEEEELEANSVFRQKVEVSYAWMESPGCHVVDAS 199
>gi|395507246|ref|XP_003757938.1| PREDICTED: UMP-CMP kinase 2, mitochondrial [Sarcophilus harrisii]
Length = 439
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 123/205 (60%), Gaps = 9/205 (4%)
Query: 29 LPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88
+PE +E+LN+ + + N Q ++P+IV EGLD GK+ ++ V+K L+A
Sbjct: 220 IPEAKEILNLVDKCPK-NLQKG------RFPVIVIEGLDATGKTTVTEKVSKALRAVFLK 272
Query: 89 TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMA 148
+PP + R+ FD +++RRAYYSLGNYI A +I + + PV++DR+WHST+AY +A
Sbjct: 273 SPPPCVSQWRKIFDDEPTIIRRAYYSLGNYIMASEIAKQSTQAPVIIDRYWHSTAAYAIA 332
Query: 149 NELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQR-LSRRKNFTLEENELK 207
E + LP +Y WP+DL++PD+V+ LTV+ R+ R L R + T EE EL+
Sbjct: 333 TE-ISGLPHHLPPAHHSVYQWPQDLLRPDIVLLLTVNPEERIHRILGRGMHKTKEEIELE 391
Query: 208 KNAKFRELLTTIYRNMNNPELVFVD 232
N FRE + Y+ M NP VD
Sbjct: 392 NNELFREKVEISYQRMENPSCHTVD 416
>gi|431911816|gb|ELK13960.1| UMP-CMP kinase 2, mitochondrial [Pteropus alecto]
Length = 429
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 131/224 (58%), Gaps = 10/224 (4%)
Query: 29 LPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88
+PE +L++ + E + K+P+IV EGLD GK+ +Q+VA+ LKA L
Sbjct: 212 IPEARAVLDLVDQCPEQAQKG-------KFPVIVIEGLDATGKTTVTQSVAESLKAVLLK 264
Query: 89 TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMA 148
+PP+ I R+ FD +++RRA+YSLGNYI A +I ++ K PV++DR+WHST+ Y +A
Sbjct: 265 SPPACISQWRKLFDDEPTIIRRAFYSLGNYIVASEIAKESTKSPVIVDRYWHSTATYTIA 324
Query: 149 NELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK-NFTLEENELK 207
E V LP IY WP+DL+KPDLV+ L+VS R +RL R T EE EL+
Sbjct: 325 TE-VSGGLQHLPPARHPIYQWPRDLLKPDLVLLLSVSPEERARRLQDRGLERTREEAELE 383
Query: 208 KNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
N+ FR+ + Y+ M NP VD S S + ++ LI N
Sbjct: 384 ANSIFRQKVEVSYQRMENPGCHVVDAS-PSREKVLQGVLSLIQN 426
>gi|291409780|ref|XP_002721181.1| PREDICTED: UMP-CMP kinase 2-like [Oryctolagus cuniculus]
Length = 451
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 131/227 (57%), Gaps = 10/227 (4%)
Query: 9 AQYPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDG 68
A +P + +L+ A +PE +LN+ + + + K+ +I EGLD
Sbjct: 213 AVFPDRAAARDVLE-ACTPVIPEARAVLNLVDQCPQHVQRG-------KFQVIAIEGLDA 264
Query: 69 CGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL 128
GK+ +Q V+ LKA L +PPS I R+ FD +++RRA+YSLGNYI A +I ++
Sbjct: 265 TGKTTVTQAVSDALKAVLLKSPPSCIGQWRKIFDDEPTIVRRAFYSLGNYIVASEIAKES 324
Query: 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAI 188
K PV++DR+WHST+AY +A E V +LP +Y WP+DL+KPDLV+ LTVS
Sbjct: 325 VKSPVIVDRYWHSTAAYAIATE-VSGGLQQLPPAHHPVYQWPEDLLKPDLVLLLTVSPEE 383
Query: 189 RLQRLSRRK-NFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
R++RL R T EE EL+ N+ FR+ + YR M NP VD S
Sbjct: 384 RVRRLQGRGVEKTQEEAELEGNSVFRQKVQECYRRMENPGCHVVDAS 430
>gi|301771640|ref|XP_002921240.1| PREDICTED: UMP-CMP kinase 2, mitochondrial-like [Ailuropoda
melanoleuca]
Length = 265
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 123/207 (59%), Gaps = 9/207 (4%)
Query: 29 LPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88
+PE + +L++ + E + K+P+I EGLD GK+ +Q+V+ LKA L
Sbjct: 48 IPEAQAVLDLVDQCPEQVQKG-------KFPVIAIEGLDATGKTTVTQSVSDSLKAVLLK 100
Query: 89 TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMA 148
+PP+ I R+ FD +++RRA+YSLGNYI A +I ++ K PV++DR+WHST+ Y +A
Sbjct: 101 SPPACISQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESSKSPVIVDRYWHSTATYAIA 160
Query: 149 NELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL-SRRKNFTLEENELK 207
E V LP IY WP+DL+KPDLV+ LTVS R+ R+ R T EE EL+
Sbjct: 161 TE-VTGGLQHLPPAHHPIYQWPRDLLKPDLVLLLTVSPEERMHRIEGRGMERTREEAELE 219
Query: 208 KNAKFRELLTTIYRNMNNPELVFVDNS 234
N+ FR+ + Y+ M NP VD S
Sbjct: 220 ANSVFRQKVEVSYQRMENPGCHVVDAS 246
>gi|405968784|gb|EKC33817.1| UMP-CMP kinase 2, mitochondrial [Crassostrea gigas]
Length = 371
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 101/161 (62%), Gaps = 4/161 (2%)
Query: 75 SQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVV 134
++ + +KL A STPP LR+ FD ++RRAYY+LGNYI A DI + Q++ V+
Sbjct: 196 ARYIIEKLSAKRFSTPPPQTQHLRKHFDDLPEIIRRAYYALGNYIVAVDILKTCQEKAVI 255
Query: 135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL- 193
MDR+WHST+AYG+ANE S +P E Y WP DL+ PDLV++L+VSE IR R+
Sbjct: 256 MDRYWHSTTAYGIANE---TSSTDIPQEGHWAYDWPADLLTPDLVLFLSVSEEIRQIRMK 312
Query: 194 SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
R TLEE LKK+ FRE L Y+ M NP+ +D S
Sbjct: 313 GRGGESTLEEKHLKKDRLFRERLYLAYKRMRNPKCTEIDAS 353
>gi|426334646|ref|XP_004028854.1| PREDICTED: UMP-CMP kinase 2, mitochondrial, partial [Gorilla
gorilla gorilla]
Length = 325
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 137/242 (56%), Gaps = 11/242 (4%)
Query: 11 YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
+P + ++L+ S +PE + +L++ DQ K+ ++ EGLD G
Sbjct: 89 FPDREAARAVLEEC-TSFIPEAQAVLDLV-------DQCPKQIQKGKFQVVAIEGLDATG 140
Query: 71 KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
K+ +Q+VA LKA L +PPS I R+ FD +++RRA+YSLGNYI A +I ++ K
Sbjct: 141 KTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESAK 200
Query: 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRL 190
PV++DR+WHST+ Y +A E V LP +Y WP+DL+KPDL++ LTVS RL
Sbjct: 201 SPVIVDRYWHSTATYAIATE-VSGGLQHLPPAHHPVYQWPEDLLKPDLILLLTVSPEERL 259
Query: 191 QRLSRRK-NFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
QRL R T EE EL+ N+ FR+ + Y+ M NP VD S S + ++ LI
Sbjct: 260 QRLQGRGMEKTREEAELEANSVFRQKVEMSYQRMENPGCHVVDAS-PSREKVLQTVLSLI 318
Query: 250 HN 251
N
Sbjct: 319 QN 320
>gi|332812550|ref|XP_515282.3| PREDICTED: UMP-CMP kinase 2, mitochondrial isoform 2 [Pan
troglodytes]
Length = 449
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 137/242 (56%), Gaps = 11/242 (4%)
Query: 11 YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
+P + ++L+ S +PE +L++ DQ + K+ ++ EGLD G
Sbjct: 213 FPDREAARAVLEECT-SFIPEARAVLDLV-------DQCPKQIEKGKFQVVAIEGLDATG 264
Query: 71 KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
K+ +Q+VA LKA L +PPS I R+ FD +++RRA+YSLGNYI A +I ++ K
Sbjct: 265 KTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESAK 324
Query: 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRL 190
PV++DR+WHST+ Y +A E V LP +Y WP+DL+KPDL++ LTVS RL
Sbjct: 325 SPVIVDRYWHSTATYAIATE-VSGGLQHLPPAHHPVYQWPEDLLKPDLILLLTVSPEERL 383
Query: 191 QRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
QRL R T EE EL+ N+ FR+ + Y+ M NP VD S S + ++ LI
Sbjct: 384 QRLQGRGMEKTREEAELEANSVFRQKVEMSYQRMENPGCHVVDAS-PSREKVLQTVLSLI 442
Query: 250 HN 251
N
Sbjct: 443 QN 444
>gi|397481776|ref|XP_003812113.1| PREDICTED: UMP-CMP kinase 2, mitochondrial [Pan paniscus]
Length = 495
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 137/242 (56%), Gaps = 11/242 (4%)
Query: 11 YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
+P + ++L+ S +PE +L++ DQ + K+ ++ EGLD G
Sbjct: 259 FPDREAARAVLEEC-TSFIPEARAVLDLV-------DQCPKQIEKGKFQVVAIEGLDATG 310
Query: 71 KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
K+ +Q+VA LKA L +PPS I R+ FD +++RRA+YSLGNYI A +I ++ K
Sbjct: 311 KTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESAK 370
Query: 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRL 190
PV++DR+WHST+ Y +A E V LP +Y WP+DL+KPDL++ LTVS RL
Sbjct: 371 SPVIVDRYWHSTATYAIATE-VSGGLQHLPPAHHSVYQWPEDLLKPDLILLLTVSPEERL 429
Query: 191 QRLSRRK-NFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
QRL R T EE EL+ N+ FR+ + Y+ M NP VD S S + ++ LI
Sbjct: 430 QRLQGRGMEKTREEAELEANSVFRQKVEMSYQRMENPGCHVVDAS-PSREKVLQTVLSLI 488
Query: 250 HN 251
N
Sbjct: 489 QN 490
>gi|355751084|gb|EHH55339.1| hypothetical protein EGM_04533, partial [Macaca fascicularis]
Length = 277
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 122/209 (58%), Gaps = 9/209 (4%)
Query: 27 SSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL 86
S +PE +L++ DQ K+ ++ EGLD GK+ +Q+VA LKA L
Sbjct: 56 SFIPEARAVLDLV-------DQCPKQVQKGKFQVVAIEGLDATGKTTVTQSVADSLKAVL 108
Query: 87 KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYG 146
+PPS I R+ FD +++RRA+YSLGNYI A +I ++ K PV++DR+WHST+ Y
Sbjct: 109 LKSPPSCIGQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESAKSPVIVDRYWHSTATYA 168
Query: 147 MANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK-NFTLEENE 205
+A E V LP +Y WP+DL+KPDL++ LTVS RLQRL R T EE E
Sbjct: 169 IATE-VSGGLQHLPPAHHPVYQWPEDLLKPDLILLLTVSPEERLQRLQGRGMEKTREEAE 227
Query: 206 LKKNAKFRELLTTIYRNMNNPELVFVDNS 234
L+ N+ FR+ + Y+ M NP VD S
Sbjct: 228 LEANSVFRQKVEMSYQRMENPGCHVVDAS 256
>gi|395862782|ref|XP_003803607.1| PREDICTED: UMP-CMP kinase 2, mitochondrial [Otolemur garnettii]
Length = 656
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 130/225 (57%), Gaps = 14/225 (6%)
Query: 29 LPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88
+PE E+L++ DQ K+ +I EGLD GK+ +Q+V+ LKA L
Sbjct: 335 IPEAREVLDLV-------DQCPKQVQKGKFQVIAIEGLDATGKTTVTQSVSDSLKAVLLK 387
Query: 89 TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMA 148
+PPS I R+ FDA +++RRA+YSLGNYI A +I ++ K PV++DR+WHST+ Y +A
Sbjct: 388 SPPSCISQWRKIFDAEPTIIRRAFYSLGNYIVASEIAKESAKSPVIIDRYWHSTATYAIA 447
Query: 149 NELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL-SRRKNFTLEENELK 207
E V LP +Y WP DL++PDLV+ LTV+ R++RL R T EE EL+
Sbjct: 448 TE-VSGGVHYLPPAHHPVYQWPTDLLRPDLVLLLTVNPEERVRRLQGRGMEKTREEAELE 506
Query: 208 KNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
N+ FR+ + Y+ M NP VD S S ++++ + NL
Sbjct: 507 ANSVFRQKVEVSYQRMENPSCHVVDAS-----PSREEVLQTVLNL 546
>gi|260828376|ref|XP_002609139.1| hypothetical protein BRAFLDRAFT_131374 [Branchiostoma floridae]
gi|229294494|gb|EEN65149.1| hypothetical protein BRAFLDRAFT_131374 [Branchiostoma floridae]
Length = 463
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 130/229 (56%), Gaps = 6/229 (2%)
Query: 7 LFAQYPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGL 66
+F Y V++L + +P V E+L+ S + + + + + ++ +IV EGL
Sbjct: 214 VFHSYNRAVNILR-----ECPDIPGVSEVLSASSTLVPESLDVASLQEKCQHSVIVLEGL 268
Query: 67 DGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQ 126
D GK+ ++ + K L A + +PP I LRE FD+ L+RRAYY+LGNYI A + +
Sbjct: 269 DATGKTTLTERLGKMLSAPVLQSPPLPIRHLREVFDSQPELIRRAYYTLGNYILAMQVAE 328
Query: 127 DLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSE 186
+ Q PVV+DRFWHST+AY +A E+ + +LP +Y+WP DL+KP L + L V+E
Sbjct: 329 EAQTHPVVIDRFWHSTTAYSIATEVGCGDESQLPPRGHSVYTWPSDLLKPQLALLLMVNE 388
Query: 187 AIRLQRLSRRK-NFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
R RL+ R T EE L+K+ FR+ L Y M NP L +D S
Sbjct: 389 TSRGARLAGRGMGKTEEEIRLEKSLLFRKRLVEAYLRMENPGLKVIDAS 437
>gi|410955900|ref|XP_003984586.1| PREDICTED: UMP-CMP kinase 2, mitochondrial [Felis catus]
Length = 254
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 131/224 (58%), Gaps = 10/224 (4%)
Query: 29 LPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88
+PE + +L++ ++ E + K+P+I EGLD GK+ +Q+V+ L A L
Sbjct: 37 IPEAQAVLDLVDQLPEQVHKG-------KFPVIAVEGLDATGKTTVTQSVSDTLGAVLLK 89
Query: 89 TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMA 148
+PP+ I R+ FD +++RRA+YSLGNYI A +I ++ + PV++DR+WHST+ Y +A
Sbjct: 90 SPPACISQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESTESPVIIDRYWHSTATYAIA 149
Query: 149 NELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK-NFTLEENELK 207
E+ LP IY WP+DL++PDLV+ LTVS R+QR+ R T EE EL+
Sbjct: 150 TEVTGGLQY-LPPAHHPIYQWPRDLLRPDLVLLLTVSPKKRMQRIEGRGVERTREEAELE 208
Query: 208 KNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
++ FR+ + Y+ M NP VD S S E ++ +I N
Sbjct: 209 ADSMFRQKVEVSYQRMENPACHVVDAS-PSREEVLQTVLGIIQN 251
>gi|117606370|ref|NP_997198.2| UMP-CMP kinase 2, mitochondrial isoform 1 precursor [Homo sapiens]
gi|296439392|sp|Q5EBM0.3|CMPK2_HUMAN RecName: Full=UMP-CMP kinase 2, mitochondrial; Flags: Precursor
gi|119621441|gb|EAX01036.1| hypothetical protein LOC129607, isoform CRA_a [Homo sapiens]
Length = 449
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 119/196 (60%), Gaps = 3/196 (1%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
K+ ++ EGLD GK+ +Q+VA LKA L +PPS I R+ FD +++RRA+YSLG
Sbjct: 251 KFQVVAIEGLDATGKTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPTIIRRAFYSLG 310
Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
NYI A +I ++ K PV++DR+WHST+ Y +A E V LP +Y WP+DL+KP
Sbjct: 311 NYIVASEIAKESAKSPVIVDRYWHSTATYAIATE-VSGGLQHLPPAHHPVYQWPEDLLKP 369
Query: 177 DLVIYLTVSEAIRLQRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSE 235
DL++ LTVS RLQRL R T EE EL+ N+ FR+ + Y+ M NP VD S
Sbjct: 370 DLILLLTVSPEERLQRLQGRGMEKTREEAELEANSVFRQKVEMSYQRMENPGCHVVDAS- 428
Query: 236 KSVHESSNDIVELIHN 251
S + ++ LI N
Sbjct: 429 PSREKVLQTVLSLIQN 444
>gi|355565440|gb|EHH21869.1| hypothetical protein EGK_05028, partial [Macaca mulatta]
Length = 353
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 129/225 (57%), Gaps = 10/225 (4%)
Query: 11 YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
+P + ++L+ S +PE +L++ DQ K+ ++ EGLD G
Sbjct: 117 FPDREAARAVLEEC-TSFIPEARAVLDLV-------DQCPKQVQKGKFQVVAIEGLDATG 168
Query: 71 KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
K+ +Q+VA LKA L +PPS I R+ FD +++RRA+YSLGNYI A +I ++ K
Sbjct: 169 KTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESAK 228
Query: 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRL 190
PV++DR+WHST+ Y +A E V LP +Y WP+DL+KPDL++ LTVS RL
Sbjct: 229 SPVIVDRYWHSTATYAIATE-VSGGLQHLPPAHHPVYQWPEDLLKPDLILLLTVSPEERL 287
Query: 191 QRLSRRK-NFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
QRL R T EE EL+ N+ FR+ + Y+ M NP VD S
Sbjct: 288 QRLQGRGMEKTREEAELEANSVFRQKVEMSYQRMENPGCHVVDAS 332
>gi|59808649|gb|AAH89425.1| CMPK2 protein [Homo sapiens]
Length = 441
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 119/196 (60%), Gaps = 3/196 (1%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
K+ ++ EGLD GK+ +Q+VA LKA L +PPS I R+ FD +++RRA+YSLG
Sbjct: 243 KFQVVAIEGLDATGKTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPTIIRRAFYSLG 302
Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
NYI A +I ++ K PV++DR+WHST+ Y +A E V LP +Y WP+DL+KP
Sbjct: 303 NYIVASEIAKESAKSPVIVDRYWHSTATYAIATE-VSGGLQHLPPAHHPVYQWPEDLLKP 361
Query: 177 DLVIYLTVSEAIRLQRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSE 235
DL++ LTVS RLQRL R T EE EL+ N+ FR+ + Y+ M NP VD S
Sbjct: 362 DLILLLTVSPEERLQRLQGRGMEKTREEAELEANSVFRQKVEMSYQRMENPGCHVVDAS- 420
Query: 236 KSVHESSNDIVELIHN 251
S + ++ LI N
Sbjct: 421 PSREKVLQTVLSLIQN 436
>gi|354542543|ref|NP_001117091.2| thymidylate kinase [Salmo salar]
Length = 419
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 125/207 (60%), Gaps = 9/207 (4%)
Query: 29 LPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88
+PE + +L + + E+ ++ + +P+IV EGLD GKS ++++ + L A+L
Sbjct: 201 IPESKAVLELVDQRPESKEKTA-------FPVIVIEGLDATGKSTLTESLTEALGATLLK 253
Query: 89 TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMA 148
+PP + R +FD L+RRA+Y+LGNY+ A I Q+ ++ PV++DR+WHST+AY +A
Sbjct: 254 SPPQCLSPWRARFDTEPPLIRRAFYALGNYLTAGQIGQEARQAPVIVDRYWHSTAAYAIA 313
Query: 149 NELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLS-RRKNFTLEENELK 207
V LP ++Y WP DL++P LV+ L++S R++RL R ++ T+EE EL+
Sbjct: 314 TA-VGGKLGNLPQAGSEVYGWPGDLLRPSLVLMLSLSSQERMRRLQVRGQDKTMEEEELE 372
Query: 208 KNAKFRELLTTIYRNMNNPELVFVDNS 234
N FR+ + Y+ + P + VD S
Sbjct: 373 ANHLFRQKVEEAYQRVGGPACITVDAS 399
>gi|145320997|gb|ABP63530.1| thymidylate kinase [Salmo salar]
Length = 415
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 125/207 (60%), Gaps = 9/207 (4%)
Query: 29 LPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88
+PE + +L + + E+ ++ + +P+IV EGLD GKS ++++ + L A+L
Sbjct: 197 IPESKAVLELVDQRPESKEKTA-------FPVIVIEGLDATGKSTLTESLTEALGATLLK 249
Query: 89 TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMA 148
+PP + R +FD L+RRA+Y+LGNY+ A I Q+ ++ PV++DR+WHST+AY +A
Sbjct: 250 SPPQCLSPWRARFDTEPPLIRRAFYALGNYLTAGQIGQEARQAPVIVDRYWHSTAAYAIA 309
Query: 149 NELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLS-RRKNFTLEENELK 207
V LP ++Y WP DL++P LV+ L++S R++RL R ++ T+EE EL+
Sbjct: 310 TA-VGGKLGNLPQAGSEVYGWPGDLLRPSLVLMLSLSSQERMRRLQVRGQDKTMEEEELE 368
Query: 208 KNAKFRELLTTIYRNMNNPELVFVDNS 234
N FR+ + Y+ + P + VD S
Sbjct: 369 ANHLFRQKVEEAYQRVGGPACITVDAS 395
>gi|403270699|ref|XP_003927304.1| PREDICTED: UMP-CMP kinase 2, mitochondrial [Saimiri boliviensis
boliviensis]
Length = 258
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 121/209 (57%), Gaps = 9/209 (4%)
Query: 27 SSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL 86
S +PE +L++ DQ K+ ++ EGLD GK+ +Q+VA LKA L
Sbjct: 39 SFIPEARAVLDLV-------DQCPKQVQRGKFQVVAIEGLDATGKTTVTQSVADSLKAVL 91
Query: 87 KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYG 146
+PPS I R FD +++RRA+YSLGNYI A +I ++ K PV++DR+WHST+ Y
Sbjct: 92 LKSPPSCIGQWRNIFDDEPAIIRRAFYSLGNYIVASEIAKESAKSPVIVDRYWHSTATYA 151
Query: 147 MANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK-NFTLEENE 205
+A E V LP +Y WP+DL+KPDL++ LTVS RLQRL R T EE E
Sbjct: 152 IATE-VSGGLQHLPPAHHPVYQWPEDLLKPDLILLLTVSPEERLQRLQGRGVEKTREEAE 210
Query: 206 LKKNAKFRELLTTIYRNMNNPELVFVDNS 234
L+ N+ FR+ + Y+ M NP VD S
Sbjct: 211 LEANSVFRQKVEMSYQRMENPGCHVVDAS 239
>gi|390474799|ref|XP_002758096.2| PREDICTED: UMP-CMP kinase 2, mitochondrial [Callithrix jacchus]
Length = 474
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 129/226 (57%), Gaps = 10/226 (4%)
Query: 27 SSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL 86
S +PE +L++ DQ K+ ++ EGLD GK+ +Q+VA LKA L
Sbjct: 228 SFIPEARAVLDLV-------DQCPKQVQKGKFQVVAIEGLDATGKTTVTQSVADSLKAVL 280
Query: 87 KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYG 146
+PPS I R+ FD +++RRA+YSLGNYI A +I ++ K PV++DR+WHST+ Y
Sbjct: 281 LKSPPSCIGQWRKIFDDEPAIIRRAFYSLGNYIVASEIAKESAKSPVIVDRYWHSTATYA 340
Query: 147 MANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL-SRRKNFTLEENE 205
+A E V LP +Y WP+DL+KPDLV+ LTVS RLQRL R T EE E
Sbjct: 341 IATE-VSGGLQHLPPAHHPVYQWPEDLLKPDLVLLLTVSPEERLQRLQGRGMEKTREEAE 399
Query: 206 LKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
L+ N+ FR+ + Y+ M NP VD S S + ++ LI N
Sbjct: 400 LEANSVFRQKVEMSYQRMENPGCHVVDAS-PSREKVLQMVLSLIQN 444
>gi|109101925|ref|XP_001099309.1| PREDICTED: UMP-CMP kinase 2, mitochondrial-like isoform 1 [Macaca
mulatta]
Length = 448
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 122/209 (58%), Gaps = 9/209 (4%)
Query: 27 SSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL 86
S +PE +L++ DQ K+ ++ EGLD GK+ +Q+VA LKA L
Sbjct: 227 SFIPEARAVLDLV-------DQCPKQVQKGKFQVVAIEGLDATGKTTVTQSVADSLKAVL 279
Query: 87 KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYG 146
+PPS I R+ FD +++RRA+YSLGNYI A +I ++ K PV++DR+WHST+ Y
Sbjct: 280 LKSPPSCIGQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESAKSPVIVDRYWHSTATYA 339
Query: 147 MANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL-SRRKNFTLEENE 205
+A E V LP +Y WP+DL+KPDL++ LTVS RLQRL R T EE E
Sbjct: 340 IATE-VSGGLQHLPPAHHPVYQWPEDLLKPDLILLLTVSPEERLQRLQGRGMEKTREEAE 398
Query: 206 LKKNAKFRELLTTIYRNMNNPELVFVDNS 234
L+ N+ FR+ + Y+ M NP VD S
Sbjct: 399 LEANSVFRQKVEMSYQRMENPGCHVVDAS 427
>gi|326675692|ref|XP_699055.4| PREDICTED: UMP-CMP kinase 2, mitochondrial, partial [Danio rerio]
Length = 561
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 137/225 (60%), Gaps = 14/225 (6%)
Query: 29 LPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88
+PE +E+L + ++E G G +P+IV EGLD GK+ ++ + + L A+L
Sbjct: 196 IPESKEVLKL---VDEQLKTTRGNG----FPVIVIEGLDATGKTTLTEALRQSLNATLLK 248
Query: 89 TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMA 148
+PP + R++FD+ L+RRA+Y+LGNYI A I ++ + PV++DR+WHST+AY +A
Sbjct: 249 SPPQCLAPFRQRFDSEPPLIRRAFYALGNYITATHIAKESLRAPVIVDRYWHSTAAYAIA 308
Query: 149 NELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLS-RRKNFTLEENELK 207
+ + LP D ++Y WP+DL++PDLV+ LTVS R++RL R ++ T EE EL+
Sbjct: 309 TAVGGRVE-NLPKPDSELYVWPEDLLQPDLVLLLTVSPEERVRRLRDRGQDKTTEEAELE 367
Query: 208 KNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
N FR + Y+ + NP + VD S S ++++ +H+L
Sbjct: 368 INQLFRLKVEEAYKRIQNPSCITVDAS-----PSPQEVLKQVHHL 407
>gi|354478377|ref|XP_003501391.1| PREDICTED: UMP-CMP kinase 2, mitochondrial-like [Cricetulus
griseus]
Length = 257
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 140/252 (55%), Gaps = 18/252 (7%)
Query: 1 MSSKYQLFAQYPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPL 60
+ +++L + +P VS S + PE E+L++ DQ K+ +
Sbjct: 20 LCVRHELLSIFPVPVSCTSFI--------PEAREVLDLV-------DQCPREIQKGKFQV 64
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
I EGLD GKS +Q+V++ L A+L +PP I R+ FD +++RRA+YSLGNY+
Sbjct: 65 IAIEGLDATGKSTVTQSVSQSLNAALLHSPPPCIGLWRKIFDEEPTIIRRAFYSLGNYLV 124
Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
A +I ++ + PV++DR+WHST+ YG+A E V LP +Y WP DL+KPDLV+
Sbjct: 125 ASEIARESARSPVIVDRYWHSTATYGIATE-VSGGLQYLPPAHHPVYQWPGDLLKPDLVL 183
Query: 181 YLTVSEAIRLQRLSRRK-NFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVH 239
LTV+ R++RL R T EE EL+ N FR+ + Y+ M NP VD S S
Sbjct: 184 LLTVNPEERVKRLQGRGLEKTKEEAELEANNVFRQKVEMTYQRMENPSCHMVDAS-PSRE 242
Query: 240 ESSNDIVELIHN 251
++++LI N
Sbjct: 243 TVLQNVLQLIQN 254
>gi|444721677|gb|ELW62400.1| UMP-CMP kinase 2, mitochondrial [Tupaia chinensis]
Length = 427
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 120/196 (61%), Gaps = 3/196 (1%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
K+ +I EGLD GK+ +Q+V+ +L+A+L +PP+ I R+ FD +++RRA+YSLG
Sbjct: 229 KFQVIAIEGLDATGKTTVTQSVSDELQAALLKSPPACIGQWRKIFDDEPTIIRRAFYSLG 288
Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
NYI A +I ++ K PV++DR+WHST+ Y +A E V LP +Y WP+DL+KP
Sbjct: 289 NYIVASEIAKESTKSPVIVDRYWHSTATYAIATE-VSGGLQHLPPAHHPVYQWPEDLLKP 347
Query: 177 DLVIYLTVSEAIRLQRLSRRK-NFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSE 235
DLV+ LTV+ R QRL R T EE EL+ N+ FR+ + YR M NP + VD S
Sbjct: 348 DLVLLLTVNPEERAQRLEGRGLEKTREEAELEANSVFRQKVEVSYRRMQNPGCLLVDAS- 406
Query: 236 KSVHESSNDIVELIHN 251
S E ++ LI
Sbjct: 407 PSRGEVLQTVLRLIRT 422
>gi|441660797|ref|XP_004093286.1| PREDICTED: LOW QUALITY PROTEIN: UMP-CMP kinase 2, mitochondrial
[Nomascus leucogenys]
Length = 364
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 93/242 (38%), Positives = 136/242 (56%), Gaps = 11/242 (4%)
Query: 11 YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
+P + ++L+ S +PE +L++ DQ K+ ++ EGLD G
Sbjct: 128 FPDREAARAVLEEC-TSFIPEARAVLDLV-------DQCPKQVQKGKFQVVAIEGLDATG 179
Query: 71 KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
K+ +Q+VA LKA L +PPS I R+ FD +++RRA+YSLGNYI A +I ++ K
Sbjct: 180 KTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESAK 239
Query: 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRL 190
PV++DR+WHST+ Y +A E V LP +Y WP+DL+KPDL++ LTV+ RL
Sbjct: 240 SPVIVDRYWHSTATYAIATE-VSGGLQHLPPAHHPVYQWPEDLLKPDLILLLTVNPEERL 298
Query: 191 QRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
QRL R T EE EL+ N+ FR+ + Y+ M NP VD S S + ++ LI
Sbjct: 299 QRLQGRGMEKTREEAELEANSVFRQKVEMSYQRMENPGCHVVDAS-PSREKVLQTVLSLI 357
Query: 250 HN 251
N
Sbjct: 358 QN 359
>gi|402890019|ref|XP_003908291.1| PREDICTED: UMP-CMP kinase 2, mitochondrial [Papio anubis]
Length = 448
Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 121/209 (57%), Gaps = 9/209 (4%)
Query: 27 SSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL 86
S +PE +L++ DQ K ++ EGLD GK+ +Q+VA LKA L
Sbjct: 227 SFIPEARAVLDLV-------DQCPKQVQKGKCQVVAIEGLDATGKTTVTQSVADSLKAVL 279
Query: 87 KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYG 146
+PPS I R+ FD +++RRA+YSLGNYI A +I ++ K PV++DR+WHST+ Y
Sbjct: 280 LKSPPSCIGQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESAKSPVIVDRYWHSTATYA 339
Query: 147 MANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL-SRRKNFTLEENE 205
+A E V LP IY WP+DL+KPDL++ LTVS RLQRL R T EE E
Sbjct: 340 IATE-VSGGLQHLPPAHHPIYQWPEDLLKPDLILLLTVSPEERLQRLQGRGMEKTREEAE 398
Query: 206 LKKNAKFRELLTTIYRNMNNPELVFVDNS 234
L+ N+ FR+ + Y+ M NP VD S
Sbjct: 399 LEANSVFRQKVEMSYQRMENPGCHVVDAS 427
>gi|363732380|ref|XP_419937.3| PREDICTED: UMP-CMP kinase 2, mitochondrial-like [Gallus gallus]
Length = 253
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 130/224 (58%), Gaps = 10/224 (4%)
Query: 27 SSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL 86
+ +PE +L+I + E Q G ++P++VFEGLD GK+ +Q+V L A L
Sbjct: 33 ARIPEAGSVLDILEKCPE--GQRKG-----EFPVVVFEGLDATGKTTVTQSVKDALGAVL 85
Query: 87 KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYG 146
+PP+ I R FD + +RRA+Y+ GNYI A +I + + PV++DR+WHST+AY
Sbjct: 86 LRSPPACISQWRTIFDEEPTPIRRAFYAAGNYILASEIAKASTQAPVIVDRYWHSTAAYT 145
Query: 147 MANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK-NFTLEENE 205
+A E N LP + D +Y WP+DL+KPDLV+ LTVS R +RL R T EE E
Sbjct: 146 VATETDGNIQ-NLPPDHDAVYKWPEDLLKPDLVLLLTVSPEERARRLEARGLERTKEEAE 204
Query: 206 LKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
L+ N+ FR+ + YR M NP VD S S E +++LI
Sbjct: 205 LEANSLFRQRIEESYRRMVNPACQEVDAS-PSKEEVFKTVLQLI 247
>gi|350582742|ref|XP_003354983.2| PREDICTED: UMP-CMP kinase 2, mitochondrial-like [Sus scrofa]
Length = 523
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 134/225 (59%), Gaps = 10/225 (4%)
Query: 11 YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
+P + ++L+ A S +PE + +L++ R E + K+P+I EGLD G
Sbjct: 287 FPHREAARAVLE-ACTSFIPEAQAVLDLVDRCPEQVQKG-------KFPVIAIEGLDATG 338
Query: 71 KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
K+ +Q+V+ LKA L +PP+ I R+ FD +++RRA+YSLGNYI A +I ++ K
Sbjct: 339 KTTVTQSVSDSLKAVLLKSPPACISQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESTK 398
Query: 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRL 190
PV++DR+WHST+ Y +A+E V LP IY WP+DL+KPDLV+ LTVS R+
Sbjct: 399 SPVIIDRYWHSTATYTIASE-VSGGLQHLPPTHHPIYQWPRDLLKPDLVLLLTVSPEERM 457
Query: 191 QRLSRRK-NFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
+R+ R T EE EL+ ++ +R+ + Y+ M +P VD S
Sbjct: 458 KRIEGRGLERTREEVELETDSIYRQKVEVSYQRMEDPGCHVVDAS 502
>gi|154331269|ref|XP_001561453.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134058770|emb|CAM36440.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 272
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 113/214 (52%), Gaps = 3/214 (1%)
Query: 11 YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
Y S + L +L + SS P + + R E+ + R++P+IV EGLDG G
Sbjct: 18 YRSRLDSLKVLHAVAQSSPPWWTPSCSSFLRQAESLSTSTSAASARRHPVIVVEGLDGTG 77
Query: 71 KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
K+ ++T+A+KL STPP +RE F + + ++ RA+YS NYIAA+DI Q
Sbjct: 78 KTLITRTLAEKLSGMAVSTPPPQFAEVRETFRSQEEVVARAFYSAANYIAAEDILAASQS 137
Query: 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRL 190
VV+DR+W ST A +AN N D LP D +Y WP+DL PD L V EA+R+
Sbjct: 138 AVVVVDRWWCSTCAMALAN--AHNYD-SLPPSGDAVYRWPEDLPAPDAGFLLCVDEAVRV 194
Query: 191 QRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN 224
R+ +R EE L ++ R + YR N
Sbjct: 195 ARIRKRAPEDFEEQRLSSQSEMRRVAMEAYRRTN 228
>gi|359321543|ref|XP_003639618.1| PREDICTED: LOW QUALITY PROTEIN: UMP-CMP kinase 2, mitochondrial
[Canis lupus familiaris]
Length = 269
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 134/224 (59%), Gaps = 10/224 (4%)
Query: 29 LPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88
+PE + +L++ + E + K+P+IV EGLD GK+ +Q+++ LKA+L
Sbjct: 52 IPEAQAVLDLVDQCPEQVQKG-------KFPVIVIEGLDATGKTTVTQSISDSLKAALLK 104
Query: 89 TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMA 148
+PP+ I R+ FD +++RRA+YSLGNYI A +I ++ K PV++DR+WHST+ Y +A
Sbjct: 105 SPPACISQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESTKSPVIVDRYWHSTATYAIA 164
Query: 149 NELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL-SRRKNFTLEENELK 207
E V LP IY WP+DL+KPDLV+ LTVS R++R+ R T EE EL+
Sbjct: 165 TE-VTGGLQHLPPAHHSIYQWPRDLLKPDLVLLLTVSPEERMRRIQGRGMERTREETELE 223
Query: 208 KNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
N+ FR+ + Y+ M NP + VD S S E ++ +I N
Sbjct: 224 ANSIFRQKVEMSYQRMENPGCLLVDAS-PSREEVLQMVLSIIQN 266
>gi|344245151|gb|EGW01255.1| UMP-CMP kinase 2, mitochondrial [Cricetulus griseus]
Length = 223
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 130/226 (57%), Gaps = 10/226 (4%)
Query: 27 SSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL 86
S +PE E+L++ DQ K+ +I EGLD GKS +Q+V++ L A+L
Sbjct: 4 SFIPEAREVLDLV-------DQCPREIQKGKFQVIAIEGLDATGKSTVTQSVSQSLNAAL 56
Query: 87 KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYG 146
+PP I R+ FD +++RRA+YSLGNY+ A +I ++ + PV++DR+WHST+ YG
Sbjct: 57 LHSPPPCIGLWRKIFDEEPTIIRRAFYSLGNYLVASEIARESARSPVIVDRYWHSTATYG 116
Query: 147 MANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK-NFTLEENE 205
+A E V LP +Y WP DL+KPDLV+ LTV+ R++RL R T EE E
Sbjct: 117 IATE-VSGGLQYLPPAHHPVYQWPGDLLKPDLVLLLTVNPEERVKRLQGRGLEKTKEEAE 175
Query: 206 LKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
L+ N FR+ + Y+ M NP VD S S ++++LI N
Sbjct: 176 LEANNVFRQKVEMTYQRMENPSCHMVDAS-PSRETVLQNVLQLIQN 220
>gi|224048693|ref|XP_002196001.1| PREDICTED: UMP-CMP kinase 2, mitochondrial [Taeniopygia guttata]
Length = 241
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 128/228 (56%), Gaps = 10/228 (4%)
Query: 29 LPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88
+PE E +L++ + E + S +P+IVFEGLD GK+ +Q V L L
Sbjct: 23 IPEAEAILDLMEKCPEHQKKGS-------FPVIVFEGLDATGKTTVTQAVKDALNGILLR 75
Query: 89 TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMA 148
+PP+ I R FD + ++RA+Y+ GNYI A +I + + PV++DR+WHST+AY +A
Sbjct: 76 SPPACISQWRTVFDDEPTPIKRAFYAAGNYILASEIAKASTQAPVIIDRYWHSTAAYAIA 135
Query: 149 NELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK-NFTLEENELK 207
E + LP D++Y WP+DL+KPDLV+ LTV R++RL R T EE EL+
Sbjct: 136 TETIGKVQ-DLPPVQDEVYQWPEDLLKPDLVLLLTVDPEERVRRLQHRGLEKTKEEAELE 194
Query: 208 KNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPMF 255
N+ FR+ + Y+ M NP VD S S E +++LI F
Sbjct: 195 ANSLFRQSVEESYKRMVNPVCQEVDAS-PSKEEVLKTVLQLIKKHCAF 241
>gi|326916472|ref|XP_003204531.1| PREDICTED: UMP-CMP kinase 2, mitochondrial-like [Meleagris
gallopavo]
Length = 267
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 130/227 (57%), Gaps = 10/227 (4%)
Query: 24 AQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83
A + +PE +L+I + E Q G ++P++VFEGLD GK+ +Q+V L
Sbjct: 44 ACAARIPEAGAVLDILEKCPER--QRKG-----EFPVVVFEGLDATGKTTVTQSVKDALG 96
Query: 84 ASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTS 143
A L +PP I R FD + +RRA+Y+ GNYI A +I + + PV++DR+WHST+
Sbjct: 97 AVLLRSPPVCISQWRTIFDEEPTPIRRAFYAAGNYILASEIAKASTQAPVIVDRYWHSTA 156
Query: 144 AYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK-NFTLE 202
AY +A E N LP + D +Y WP+DL+KPDLV+ LTV+ R +RL R T E
Sbjct: 157 AYTIATETDGNIQ-NLPPDHDAVYKWPEDLLKPDLVLLLTVNPEERARRLEGRGLERTKE 215
Query: 203 ENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
E EL+ N+ FR+ + YR M NP VD S S E +++LI
Sbjct: 216 EAELEANSLFRQRIEESYRRMVNPACQEVDAS-PSKEEVFKTVLQLI 261
>gi|157819837|ref|NP_001101487.1| UMP-CMP kinase 2, mitochondrial [Rattus norvegicus]
gi|149051032|gb|EDM03205.1| thymidylate kinase family LPS-inducible member (predicted) [Rattus
norvegicus]
Length = 417
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 123/209 (58%), Gaps = 9/209 (4%)
Query: 27 SSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL 86
S +PE E+L++ DQ K+ +I EGLD GK+ +Q+V++ L+A L
Sbjct: 198 SFIPEAREVLDLV-------DQCPREIQKGKFQVIAIEGLDATGKTTLTQSVSESLQAVL 250
Query: 87 KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYG 146
+PP I R+ FD +++RRA+YSLGNY+ A +I + K PV++DR+WHST+ Y
Sbjct: 251 LQSPPPCISQWRKLFDDEPTIIRRAFYSLGNYLVASEIAKQSAKFPVIVDRYWHSTATYA 310
Query: 147 MANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL-SRRKNFTLEENE 205
+A E V LP +Y WP+DL+KPDLV+ LTV+ R++RL R + T EE E
Sbjct: 311 IATE-VSGGLQYLPPAHHPVYQWPRDLLKPDLVLLLTVNSEERVRRLQGRGQEKTKEEAE 369
Query: 206 LKKNAKFRELLTTIYRNMNNPELVFVDNS 234
L+ N+ FR+ + Y+ M NP VD S
Sbjct: 370 LEVNSVFRQKVEATYQRMENPSCRLVDAS 398
>gi|148705024|gb|EDL36971.1| thymidylate kinase family LPS-inducible member, isoform CRA_b [Mus
musculus]
Length = 272
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 139/249 (55%), Gaps = 14/249 (5%)
Query: 8 FAQYPSL---VSVLSILKSAQYSS-LPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVF 63
F++ P+L + L + S Q +S +PE +L++ DQ K+ +I
Sbjct: 30 FSKAPALPCSCTGLFVCFSLQCTSFIPEARAVLDLV-------DQCPKEVQKGKFQVIAI 82
Query: 64 EGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQD 123
EGLD GK+ +Q+V++ LKA L +PP I R+ FD +++RRA+YSLGNY+ A +
Sbjct: 83 EGLDATGKTTLTQSVSESLKAVLLQSPPPCISQWRKIFDDEPTIIRRAFYSLGNYLVASE 142
Query: 124 IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLT 183
I ++ PV++DR+WHST+ Y +A E V LP +Y WP DL+KPDLV+ LT
Sbjct: 143 IAKESTNFPVIVDRYWHSTATYAIATE-VSGGLQYLPPAHHPVYQWPGDLLKPDLVLLLT 201
Query: 184 VSEAIRLQRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESS 242
V+ R++RL R + T EE EL+ N FR+ + Y+ M NP VD S S
Sbjct: 202 VNSEERVRRLQGRGQEKTKEEAELEANNVFRQKVEMTYQRMENPSCHLVDAS-PSRETVL 260
Query: 243 NDIVELIHN 251
++ELI +
Sbjct: 261 QKVLELIQS 269
>gi|281342761|gb|EFB18345.1| hypothetical protein PANDA_010124 [Ailuropoda melanoleuca]
Length = 329
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 114/187 (60%), Gaps = 9/187 (4%)
Query: 29 LPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88
+PE + +L++ + E + K+P+I EGLD GK+ +Q+V+ LKA L
Sbjct: 22 IPEAQAVLDLVDQCPEQVQKG-------KFPVIAIEGLDATGKTTVTQSVSDSLKAVLLK 74
Query: 89 TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMA 148
+PP+ I R+ FD +++RRA+YSLGNYI A +I ++ K PV++DR+WHST+ Y +A
Sbjct: 75 SPPACISQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESSKSPVIVDRYWHSTATYAIA 134
Query: 149 NELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL-SRRKNFTLEENELK 207
E V LP IY WP+DL+KPDLV+ LTVS R+ R+ R T EE EL+
Sbjct: 135 TE-VTGGLQHLPPAHHPIYQWPRDLLKPDLVLLLTVSPEERMHRIEGRGMERTREEAELE 193
Query: 208 KNAKFRE 214
N+ FR+
Sbjct: 194 ANSVFRQ 200
>gi|449283668|gb|EMC90273.1| UMP-CMP kinase 2, mitochondrial, partial [Columba livia]
Length = 224
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 126/224 (56%), Gaps = 10/224 (4%)
Query: 27 SSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL 86
+ +PE +L++ E Q G +P++VFEGLD GK+ +Q V L A L
Sbjct: 4 ARIPEARAVLDLLEDCPE--HQKKG-----GFPVVVFEGLDATGKTTITQAVKDTLNAVL 56
Query: 87 KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYG 146
+PP I R FD + ++RA+Y+ GNYI A +I + + PV++DR+WHST+AY
Sbjct: 57 LRSPPPCISQWRTIFDDQPTPIKRAFYAAGNYILASEIAEASTRAPVIIDRYWHSTAAYT 116
Query: 147 MANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK-NFTLEENE 205
+A E V LP D++Y WP+DL+KPDLV+ LTV R++RL R T EE E
Sbjct: 117 IATE-VNGKVQDLPPAHDEVYQWPEDLLKPDLVLLLTVDPEERVRRLQCRGLEKTKEEAE 175
Query: 206 LKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
L+ N+ FR+ + YR M NP VD S S E +++LI
Sbjct: 176 LEANSLFRQRVEESYRRMVNPACQEVDAS-PSKEEVLKTVLQLI 218
>gi|47230082|emb|CAG10496.1| unnamed protein product [Tetraodon nigroviridis]
Length = 371
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 113/208 (54%), Gaps = 14/208 (6%)
Query: 16 SVLSILKSAQYSSLPEVEELLNIYSRINE----------TNDQDSGVGDDRKYPLIVFEG 65
S L+I+ S + SL E E+L S I + + G D +P+IV EG
Sbjct: 166 SALNIINSDVFYSLEEAREVLKESSDIIPEAASVLEYLPSRVEPRGRAD---FPVIVIEG 222
Query: 66 LDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIK 125
LD GK+ ++++ L A+L +PP + R +FD L+RRA+Y+LGNYI A
Sbjct: 223 LDATGKTTLTESLVGALGATLLRSPPQCLSPFRARFDQEPPLIRRAFYALGNYITADQAI 282
Query: 126 QDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVS 185
++ K PV++DRFWHST+AY +A L + LP E ++Y WP DL +P LV+ LT+
Sbjct: 283 REAGKAPVIIDRFWHSTAAYAIATAL-RGPVHNLPAEGSEVYRWPGDLFQPHLVVLLTLD 341
Query: 186 EAIRLQRLSRRKNFTLEENELKKNAKFR 213
R +RL R +E E +++ FR
Sbjct: 342 PEERRRRLKDRGLIKTKEEEKLEHSLFR 369
>gi|12835871|dbj|BAB23396.1| unnamed protein product [Mus musculus]
Length = 395
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 3/196 (1%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
K+ +I EGLD GK+ +Q+V++ LKA L +PP I R+ FD +++RRA+YSLG
Sbjct: 199 KFQVIAIEGLDATGKTTLTQSVSESLKAVLLQSPPPCISQWRKIFDDEPTIIRRAFYSLG 258
Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
NY+ A +I ++ PV++DR+WHST+ Y +A E V LP +Y WP DL+KP
Sbjct: 259 NYLVASEIAKESTNFPVIVDRYWHSTATYAIATE-VSGGLQYLPPAHHPVYQWPGDLLKP 317
Query: 177 DLVIYLTVSEAIRLQRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSE 235
DLV+ LTV+ R++RL R + T EE EL+ N FR+ + Y+ M NP VD S
Sbjct: 318 DLVLLLTVNSEERVRRLQGRGQEKTKEEAELEANNVFRQKVEMTYQRMENPSCHLVDAS- 376
Query: 236 KSVHESSNDIVELIHN 251
S ++ELI +
Sbjct: 377 PSRETVLQKVLELIQS 392
>gi|34785825|gb|AAH57565.1| Cmpk2 protein [Mus musculus]
Length = 417
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 3/196 (1%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
K+ +I EGLD GK+ +Q+V++ LKA L +PP I R+ FD +++RRA+YSLG
Sbjct: 221 KFQVIAIEGLDATGKTTLTQSVSESLKAVLLQSPPPCISQWRKIFDDEPTIIRRAFYSLG 280
Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
NY+ A +I ++ PV++DR+WHST+ Y +A E V LP +Y WP DL+KP
Sbjct: 281 NYLVASEIAKESTNFPVIVDRYWHSTATYAIATE-VSGGLQYLPPAHHPVYQWPGDLLKP 339
Query: 177 DLVIYLTVSEAIRLQRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSE 235
DLV+ LTV+ R++RL R + T EE EL+ N FR+ + Y+ M NP VD S
Sbjct: 340 DLVLLLTVNSEERVRRLQGRGQEKTKEEAELEANNVFRQKVEMTYQRMENPSCHLVDAS- 398
Query: 236 KSVHESSNDIVELIHN 251
S ++ELI +
Sbjct: 399 PSRETVLQKVLELIQS 414
>gi|54114922|gb|AAH27329.1| Cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial [Mus
musculus]
gi|74142469|dbj|BAE31987.1| unnamed protein product [Mus musculus]
gi|74151705|dbj|BAE29646.1| unnamed protein product [Mus musculus]
gi|74178017|dbj|BAE29803.1| unnamed protein product [Mus musculus]
gi|74181304|dbj|BAE29932.1| unnamed protein product [Mus musculus]
Length = 420
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 3/196 (1%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
K+ +I EGLD GK+ +Q+V++ LKA L +PP I R+ FD +++RRA+YSLG
Sbjct: 224 KFQVIAIEGLDATGKTTLTQSVSESLKAVLLQSPPPCISQWRKIFDDEPTIIRRAFYSLG 283
Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
NY+ A +I ++ PV++DR+WHST+ Y +A E V LP +Y WP DL+KP
Sbjct: 284 NYLVASEIAKESTNFPVIVDRYWHSTATYAIATE-VSGGLQYLPPAHHPVYQWPGDLLKP 342
Query: 177 DLVIYLTVSEAIRLQRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSE 235
DLV+ LTV+ R++RL R + T EE EL+ N FR+ + Y+ M NP VD S
Sbjct: 343 DLVLLLTVNSEERVRRLQGRGQEKTKEEAELEANNVFRQKVEMTYQRMENPSCHLVDAS- 401
Query: 236 KSVHESSNDIVELIHN 251
S ++ELI +
Sbjct: 402 PSRETVLQKVLELIQS 417
>gi|74151963|dbj|BAE32020.1| unnamed protein product [Mus musculus]
Length = 420
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 3/196 (1%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
K+ +I EGLD GK+ +Q+V++ LKA L +PP I R+ FD +++RRA+YSLG
Sbjct: 224 KFQVIAIEGLDATGKTTLTQSVSESLKAVLLQSPPPCISQWRKIFDDEPTIIRRAFYSLG 283
Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
NY+ A +I ++ PV++DR+WHST+ Y +A E V LP +Y WP DL+KP
Sbjct: 284 NYLVASEIAKESTNFPVIVDRYWHSTATYAIATE-VSGGLQYLPPAHHPVYQWPGDLLKP 342
Query: 177 DLVIYLTVSEAIRLQRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSE 235
DLV+ LTV+ R++RL R + T EE EL+ N FR+ + Y+ M NP VD S
Sbjct: 343 DLVLLLTVNSEERVRRLQGRGQEKTKEEAELEANNVFRQKVEMTYQRMENPSCHLVDAS- 401
Query: 236 KSVHESSNDIVELIHN 251
S ++ELI +
Sbjct: 402 PSRETVLQKVLELIQS 417
>gi|117606366|ref|NP_065582.3| UMP-CMP kinase 2, mitochondrial precursor [Mus musculus]
gi|187470852|sp|Q3U5Q7.2|CMPK2_MOUSE RecName: Full=UMP-CMP kinase 2, mitochondrial; AltName:
Full=Thymidylate kinase LPS-inducible member;
Short=TYKi; Flags: Precursor
Length = 447
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 3/196 (1%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
K+ +I EGLD GK+ +Q+V++ LKA L +PP I R+ FD +++RRA+YSLG
Sbjct: 251 KFQVIAIEGLDATGKTTLTQSVSESLKAVLLQSPPPCISQWRKIFDDEPTIIRRAFYSLG 310
Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
NY+ A +I ++ PV++DR+WHST+ Y +A E V LP +Y WP DL+KP
Sbjct: 311 NYLVASEIAKESTNFPVIVDRYWHSTATYAIATE-VSGGLQYLPPAHHPVYQWPGDLLKP 369
Query: 177 DLVIYLTVSEAIRLQRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSE 235
DLV+ LTV+ R++RL R + T EE EL+ N FR+ + Y+ M NP VD S
Sbjct: 370 DLVLLLTVNSEERVRRLQGRGQEKTKEEAELEANNVFRQKVEMTYQRMENPSCHLVDAS- 428
Query: 236 KSVHESSNDIVELIHN 251
S ++ELI +
Sbjct: 429 PSRETVLQKVLELIQS 444
>gi|148705023|gb|EDL36970.1| thymidylate kinase family LPS-inducible member, isoform CRA_a [Mus
musculus]
Length = 394
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 3/196 (1%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
K+ +I EGLD GK+ +Q+V++ LKA L +PP I R+ FD +++RRA+YSLG
Sbjct: 198 KFQVIAIEGLDATGKTTLTQSVSESLKAVLLQSPPPCISQWRKIFDDEPTIIRRAFYSLG 257
Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
NY+ A +I ++ PV++DR+WHST+ Y +A E V LP +Y WP DL+KP
Sbjct: 258 NYLVASEIAKESTNFPVIVDRYWHSTATYAIATE-VSGGLQYLPPAHHPVYQWPGDLLKP 316
Query: 177 DLVIYLTVSEAIRLQRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSE 235
DLV+ LTV+ R++RL R + T EE EL+ N FR+ + Y+ M NP VD S
Sbjct: 317 DLVLLLTVNSEERVRRLQGRGQEKTKEEAELEANNVFRQKVEMTYQRMENPSCHLVDAS- 375
Query: 236 KSVHESSNDIVELIHN 251
S ++ELI +
Sbjct: 376 PSRETVLQKVLELIQS 391
>gi|297265388|ref|XP_002799179.1| PREDICTED: UMP-CMP kinase 2, mitochondrial-like isoform 2 [Macaca
mulatta]
Length = 408
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 113/189 (59%), Gaps = 9/189 (4%)
Query: 27 SSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL 86
S +PE +L++ DQ K+ ++ EGLD GK+ +Q+VA LKA L
Sbjct: 227 SFIPEARAVLDLV-------DQCPKQVQKGKFQVVAIEGLDATGKTTVTQSVADSLKAVL 279
Query: 87 KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYG 146
+PPS I R+ FD +++RRA+YSLGNYI A +I ++ K PV++DR+WHST+ Y
Sbjct: 280 LKSPPSCIGQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESAKSPVIVDRYWHSTATYA 339
Query: 147 MANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL-SRRKNFTLEENE 205
+A E V LP +Y WP+DL+KPDL++ LTVS RLQRL R T EE E
Sbjct: 340 IATE-VSGGLQHLPPAHHPVYQWPEDLLKPDLILLLTVSPEERLQRLQGRGMEKTREEAE 398
Query: 206 LKKNAKFRE 214
L+ N+ FR+
Sbjct: 399 LEANSVFRQ 407
>gi|74219719|dbj|BAE29625.1| unnamed protein product [Mus musculus]
Length = 420
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 116/196 (59%), Gaps = 3/196 (1%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
K+ +I EGLD GK+ +Q+V++ LKA L +PP I R+ FD +++RRA+YSLG
Sbjct: 224 KFQVIAIEGLDATGKTTLTQSVSESLKAVLLQSPPPCISQWRKIFDDEPTIIRRAFYSLG 283
Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
NY+ A I ++ PV++DR+WHST+ Y +A E V LP +Y WP DL+KP
Sbjct: 284 NYLVASGIAKESTNFPVIVDRYWHSTATYAIATE-VSGGLQYLPPAHHPVYQWPGDLLKP 342
Query: 177 DLVIYLTVSEAIRLQRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSE 235
DLV+ LTV+ R++RL R + T EE EL+ N FR+ + Y+ M NP VD S
Sbjct: 343 DLVLLLTVNSEERVRRLQGRGQEKTKEEAELEANNVFRQKVEMTYQRMENPSCHLVDAS- 401
Query: 236 KSVHESSNDIVELIHN 251
S ++ELI +
Sbjct: 402 PSRETVLQKVLELIQS 417
>gi|374429552|ref|NP_001243406.1| UMP-CMP kinase 2, mitochondrial isoform 2 precursor [Homo sapiens]
gi|146327006|gb|AAI41803.1| CMPK2 protein [Homo sapiens]
Length = 409
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 121/205 (59%), Gaps = 10/205 (4%)
Query: 11 YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
+P + ++L+ S +PE +L++ + + + K+ ++ EGLD G
Sbjct: 213 FPDREAARAVLEECT-SFIPEARAVLDLVDQCPKQIQKG-------KFQVVAIEGLDATG 264
Query: 71 KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
K+ +Q+VA LKA L +PPS I R+ FD +++RRA+YSLGNYI A +I ++ K
Sbjct: 265 KTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESAK 324
Query: 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRL 190
PV++DR+WHST+ Y +A E V LP +Y WP+DL+KPDL++ LTVS RL
Sbjct: 325 SPVIVDRYWHSTATYAIATE-VSGGLQHLPPAHHPVYQWPEDLLKPDLILLLTVSPEERL 383
Query: 191 QRL-SRRKNFTLEENELKKNAKFRE 214
QRL R T EE EL+ N+ FR+
Sbjct: 384 QRLQGRGMEKTREEAELEANSVFRQ 408
>gi|405972017|gb|EKC36814.1| UMP-CMP kinase 2, mitochondrial [Crassostrea gigas]
Length = 168
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 88/137 (64%), Gaps = 5/137 (3%)
Query: 99 EKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLK 158
E DA + ++RRAYY+LGNYI A DI + Q++ V+MDR+WHST+AYG+ANE S
Sbjct: 18 EGLDAGE-IIRRAYYALGNYIVAVDILKTCQEKAVIMDRYWHSTTAYGIANE---TSSTD 73
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL-SRRKNFTLEENELKKNAKFRELLT 217
+P E Y WP DL+ PDLV++L+VSE IR R+ R T EE LKK+ FRE L
Sbjct: 74 IPQEGHWAYDWPADLLTPDLVLFLSVSEEIRQIRMKGRGGESTQEEKHLKKDRLFRERLY 133
Query: 218 TIYRNMNNPELVFVDNS 234
Y+ M NP+ +D S
Sbjct: 134 LAYKRMRNPKCTEIDAS 150
>gi|345316729|ref|XP_001520130.2| PREDICTED: UMP-CMP kinase 2, mitochondrial-like, partial
[Ornithorhynchus anatinus]
Length = 224
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 122/207 (58%), Gaps = 9/207 (4%)
Query: 29 LPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88
+PE + +L++ R E G +P+IV EGLD GK+ +++V++ L A L
Sbjct: 5 IPEAQAVLDLVDRWPEA-------GQKGPFPVIVIEGLDATGKTTVTRSVSESLNAVLLK 57
Query: 89 TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMA 148
+PP + R+ FD ++++RA+YSLGNYI A +I + + PV++DR+WHST+A+ +A
Sbjct: 58 SPPPCMDEWRKVFDKEPTIIKRAFYSLGNYIVASEIARASTQSPVIIDRYWHSTAAFAIA 117
Query: 149 NELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK-NFTLEENELK 207
E V LP +Y WP+DL+KPDLV+ LT+S R++R+ R T EE EL+
Sbjct: 118 TE-VSGGLQNLPPAHHGVYQWPRDLLKPDLVLLLTLSSEERVRRIQGRGVEKTEEEMELE 176
Query: 208 KNAKFRELLTTIYRNMNNPELVFVDNS 234
N FR+ + Y+ M NP VD S
Sbjct: 177 ANDLFRQKVEMSYQRMENPGCQIVDAS 203
>gi|355679927|gb|AER96431.1| UMP-CMP kinase 2, mitochondrial [Mustela putorius furo]
Length = 182
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Query: 70 GKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQ 129
GK+ +Q+V+ LKA L +PP+ I R+ FD +++RRA+YSLGNYI A +I ++
Sbjct: 1 GKTTVTQSVSDSLKAVLLKSPPACISQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESA 60
Query: 130 KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIR 189
+ PV++DR+WHST+ Y +A E V LP IY WP+DL+KPDLV+ LTVS R
Sbjct: 61 RSPVIVDRYWHSTATYAIATE-VTGGLQHLPPAHHPIYQWPRDLLKPDLVLLLTVSPEER 119
Query: 190 LQRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
+ R+ R T EE EL+ N+ FR+ + Y+ M NP VD S
Sbjct: 120 MHRIEGRGMERTREEAELEANSIFRQKVEVSYQRMENPGCHVVDAS 165
>gi|348575666|ref|XP_003473609.1| PREDICTED: UMP-CMP kinase 2, mitochondrial-like [Cavia porcellus]
Length = 319
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 87/136 (63%), Gaps = 2/136 (1%)
Query: 80 KKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFW 139
K L A L +PPS I R+ FD +++RRA+YSLGNYI A +I + + PV++DR+W
Sbjct: 184 KALGAVLLQSPPSCIGHWRKIFDDEPNIIRRAFYSLGNYIVASEIAEASTRSPVIVDRYW 243
Query: 140 HSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK-N 198
HST+ Y +A E V LP D +Y WP+DL++PDLV+ LTVS R++RL R
Sbjct: 244 HSTATYAIATE-VSGGLQHLPPAHDPVYQWPQDLLRPDLVVLLTVSPEERVKRLQGRGLE 302
Query: 199 FTLEENELKKNAKFRE 214
T EE EL+ N+ FR+
Sbjct: 303 KTREEAELEANSIFRQ 318
>gi|432952372|ref|XP_004085082.1| PREDICTED: UMP-CMP kinase 2, mitochondrial-like, partial [Oryzias
latipes]
Length = 258
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 105/178 (58%), Gaps = 2/178 (1%)
Query: 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGN 117
+P++V EGLD GK+ ++++ + L A+L +PP + R FD L+RRA+Y+LGN
Sbjct: 62 FPVVVLEGLDATGKTTLTESLRETLGAALLRSPPDCLSPWRALFDREPPLIRRAFYALGN 121
Query: 118 YIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPD 177
YI AQ I Q+ K PV++DRFWHST+AY LP E ++YSWP DL++P
Sbjct: 122 YITAQQIAQEGMKTPVIVDRFWHSTAAY-AIATATGGPVSNLPGEGSEVYSWPGDLLRPS 180
Query: 178 LVIYLTVSEAIRLQRLSRRK-NFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
LV+ LT+ R +RL R T EE +L +N FR + YR ++ P V VD S
Sbjct: 181 LVLLLTLDAEERKRRLKDRGLEKTDEEQKLDRNQLFRLRVEEAYRRISGPPCVTVDAS 238
>gi|401414071|ref|XP_003871534.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322487751|emb|CBZ22992.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 274
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 103/194 (53%), Gaps = 7/194 (3%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL 115
R+ P+IV EGLDG GK+ ++T+A+KL STPP ++RE F + + RA+YS
Sbjct: 65 RQNPVIVVEGLDGTGKTLVTRTLAEKLSGVAMSTPPPQFAAIRETFRGQEEAVARAFYSA 124
Query: 116 GNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK 175
NYIAA I + Q VV+DR+W ST A +AN +S LP D +Y WP DL
Sbjct: 125 ANYIAAAGILEASQSSAVVVDRWWCSTCAMALANGCNYDS---LPPRGDAVYRWPADLPA 181
Query: 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSE 235
PD L V EA+R+ R+ RR EE L ++ R + YR N + + +
Sbjct: 182 PDAGFLLCVDEAVRVARIRRRAPEDAEERRLSSQSEMRRVAMEAYRRTN----MLTEVAA 237
Query: 236 KSVHESSNDIVELI 249
S + N I+ L+
Sbjct: 238 PSYRVAVNTILRLL 251
>gi|389592323|ref|XP_003721529.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438060|emb|CBZ11812.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 274
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 106/211 (50%), Gaps = 7/211 (3%)
Query: 39 YSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLR 98
+ R E + RK P+IV EGLDG GK+ ++T+A+KL STPP +R
Sbjct: 48 FVRQAEALSTSASATAARKNPVIVVEGLDGTGKTLVTRTLAEKLSGVAISTPPPQFTEIR 107
Query: 99 EKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLK 158
F + + RA+YS NYIAA+ I Q VV+DR+W ST A +AN + +S
Sbjct: 108 NTFRGQEEAVARAFYSAANYIAAEGILAASQSSVVVVDRWWCSTCAMALANGCLYDS--- 164
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT 218
LP +Y WP+DL PD L V EA+R+ R+ RR EE L + R +
Sbjct: 165 LPPSGAAVYRWPEDLPAPDAGFLLCVDEAVRVARIRRRAPEDAEERRLSSQREMRCVAME 224
Query: 219 IYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
YR N + ++ + S + N I+ L+
Sbjct: 225 AYRRTN----MLIEVAAPSYRVAVNSILRLL 251
>gi|390357041|ref|XP_781489.2| PREDICTED: uncharacterized protein LOC576049 [Strongylocentrotus
purpuratus]
Length = 539
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 99/181 (54%), Gaps = 4/181 (2%)
Query: 17 VLSILKSAQYSSLPEVEELLNIYS-RINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTS 75
++IL Y LPE +L+ I ++ + G K+P+IV EG G S+ S
Sbjct: 263 AMNILSKCDY--LPEAGQLMEIAQHQLAVLPACNHGNQTQLKHPVIVMEGTCDAGISNHS 320
Query: 76 QTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVM 135
++ + + +PPS I LRE FD + L++ A+Y++ NYI ++ + PVV+
Sbjct: 321 LRLSNAIGGTHLKSPPSCIQHLRETFDKQNKLIQAAFYTVCNYILGSQTEEARKDAPVVL 380
Query: 136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSR 195
DRFW+ST+A+ + +++ + LP +D +Y WP DL KPD VI + +AIR Q R
Sbjct: 381 DRFWNSTAAFSITSDVGRGVS-NLPPKDHFVYDWPMDLFKPDAVILVGSKKAIRNQSGGR 439
Query: 196 R 196
+
Sbjct: 440 K 440
>gi|146074845|ref|XP_001462622.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134066700|emb|CAM65160.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 272
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 102/194 (52%), Gaps = 7/194 (3%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL 115
RK P++V EGLDG GK+ ++T+A+KL STPP +R F + + RA+YS
Sbjct: 63 RKNPVVVVEGLDGTGKTLVTRTLAEKLSGVAISTPPPQFAEIRSTFRGQEEAVARAFYSA 122
Query: 116 GNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK 175
NYIAA I Q VV+DR+W ST A +AN +S LP D +Y WP+DL
Sbjct: 123 ANYIAAASILAASQSSVVVVDRWWCSTCAMALANGCCYDS---LPPSGDAVYRWPEDLPA 179
Query: 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSE 235
PD L V EA+R+ R+ RR EE L +++ R + YR N + + +
Sbjct: 180 PDAGFLLCVDEAVRVARIRRRAPEDAEERRLSSHSEMRRVAMEAYRRTN----MLTEVAA 235
Query: 236 KSVHESSNDIVELI 249
S + N I+ L+
Sbjct: 236 PSYRVAVNSILRLL 249
>gi|398023487|ref|XP_003864905.1| unnamed protein product [Leishmania donovani]
gi|322503141|emb|CBZ38225.1| unnamed protein product [Leishmania donovani]
Length = 272
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 101/194 (52%), Gaps = 7/194 (3%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL 115
RK P++V EGLDG GK+ ++T+A+KL STPP +R F + + RA+YS
Sbjct: 63 RKNPVVVVEGLDGTGKTLVTRTLAEKLSGVAISTPPPQFAEIRSTFRGQEEAVARAFYSA 122
Query: 116 GNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK 175
NYIAA I Q VV+DR+W ST A +AN +S LP D +Y WP+DL
Sbjct: 123 ANYIAAASILAASQSSVVVVDRWWCSTCAMALANGCCYDS---LPPSGDAVYRWPEDLPA 179
Query: 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSE 235
PD L V EA+R+ R+ RR EE L ++ R + YR N + + +
Sbjct: 180 PDAGFLLCVDEAVRVARIRRRAPEDAEERRLSSQSEMRRVAMEAYRRTN----MLTEVAA 235
Query: 236 KSVHESSNDIVELI 249
S + N I+ L+
Sbjct: 236 PSYRVAVNSILRLL 249
>gi|407851428|gb|EKG05370.1| hypothetical protein TCSYLVIO_003557 [Trypanosoma cruzi]
Length = 261
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 85/168 (50%), Gaps = 6/168 (3%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL--KASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGN 117
LIV EG+DG GKS +Q++ +KL A L TP + +RE F A RA+YS N
Sbjct: 53 LIVLEGIDGVGKSLVAQSLIEKLGDSAVLIRTPHPDLSGIRETFRAQTEETARAFYSAAN 112
Query: 118 YIAAQD-IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
Y+AA D +++ VV DR+W ST A +AN + LP D IY WP+DL
Sbjct: 113 YLAAWDAFHATKERKIVVFDRWWCSTCAMALANSCRLAA---LPAAGDAIYQWPQDLPPF 169
Query: 177 DLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN 224
L L V E IR R+ +R EE L+ + RE+ YR
Sbjct: 170 QLGALLYVEEHIRQARIRQRAPEDAEERRLRAQQEMREVAMEAYRRFG 217
>gi|71662282|ref|XP_818150.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70883384|gb|EAN96299.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 261
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 85/168 (50%), Gaps = 6/168 (3%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL--KASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGN 117
LIV EG+DG GKS +Q++ +KL A L TP + +RE F A RA+YS N
Sbjct: 53 LIVLEGIDGVGKSLVAQSLIEKLGDSAVLIRTPHPDLSGIRETFRAQTEETARAFYSAAN 112
Query: 118 YIAAQD-IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
Y+AA D +++ VV DR+W ST A +AN + LP D +Y WP+DL
Sbjct: 113 YLAAWDAFHATKERKFVVFDRWWCSTCAMALANSCRLAA---LPAAGDAVYQWPQDLPPF 169
Query: 177 DLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN 224
L L V E IR R+ +R EE L+ + RE+ YR
Sbjct: 170 QLGALLYVEEHIRQARIRQRAPEDAEERRLRAQQEMREVAMEAYRRFG 217
>gi|71411155|ref|XP_807839.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70871923|gb|EAN85988.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 261
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL--KASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGN 117
LIV EG+DG GKS +Q++ ++L A L TP + +RE F A RA+YS N
Sbjct: 53 LIVLEGIDGVGKSLVAQSLIERLGDSAVLIRTPHPDLNGIRETFRAQTEETARAFYSAAN 112
Query: 118 YIAAQD-IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
Y+AA D +++ VV DR+W ST A +AN + LP D +Y WP+DL
Sbjct: 113 YLAAWDAFHATKERKVVVFDRWWCSTCAMALANSCRLTA---LPAAGDAVYQWPQDLPPF 169
Query: 177 DLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN 224
L L V E IR R+ +R EE L + RE+ YR
Sbjct: 170 QLGALLYVEEHIRQARIRQRAPEDAEERRLSAQQEMREVAMEAYRRFG 217
>gi|407409597|gb|EKF32355.1| hypothetical protein MOQ_003795 [Trypanosoma cruzi marinkellei]
Length = 261
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 101/216 (46%), Gaps = 13/216 (6%)
Query: 13 SLVSVLSILKSAQYSSL-PEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGK 71
+ V VL ++ Q S P E L+ + N Q + + LIV EG+DG GK
Sbjct: 11 ACVEVLRAVERMQPSWWTPPCTEFLHRVEQTPTVNAQPN------QKTLIVLEGIDGVGK 64
Query: 72 SHTSQTVAKKL--KASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQD-IKQDL 128
S +Q++ +KL A L TP + +RE F A RA+YS NY+AA D
Sbjct: 65 SLVAQSLIEKLGESAVLIRTPHPDLSGIREIFRAQKEETARAFYSGANYLAAWDAFHATK 124
Query: 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAI 188
+ + VV DR+W ST A +AN + LP D +Y WP+DL L L V E I
Sbjct: 125 ESKFVVFDRWWCSTCAMALANSCRLAA---LPAAGDAVYQWPQDLPPFQLGALLYVDEHI 181
Query: 189 RLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN 224
R R+ +R EE L+ + RE+ YR
Sbjct: 182 RQARIRQRAPEDAEERRLRAQQEMREVAMEAYRRFG 217
>gi|410034769|ref|XP_003949797.1| PREDICTED: UMP-CMP kinase 2, mitochondrial isoform 1 [Pan
troglodytes]
Length = 366
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 67/111 (60%), Gaps = 7/111 (6%)
Query: 27 SSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL 86
S +PE +L++ + + ++ K+ ++ EGLD GK+ +Q+VA LKA L
Sbjct: 228 SFIPEARAVLDLVDQCPKQIEKG-------KFQVVAIEGLDATGKTTVTQSVADSLKAVL 280
Query: 87 KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDR 137
+PPS I R+ FD +++RRA+YSLGNYI A +I ++ K PV++DR
Sbjct: 281 LKSPPSCIGQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESAKSPVIVDR 331
>gi|374429554|ref|NP_001243407.1| UMP-CMP kinase 2, mitochondrial isoform 3 precursor [Homo sapiens]
gi|124376186|gb|AAI32822.1| CMPK2 protein [Homo sapiens]
gi|219519051|gb|AAI44203.1| CMPK2 protein [Homo sapiens]
Length = 366
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 7/111 (6%)
Query: 27 SSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL 86
S +PE +L++ + + + K+ ++ EGLD GK+ +Q+VA LKA L
Sbjct: 228 SFIPEARAVLDLVDQCPKQIQKG-------KFQVVAIEGLDATGKTTVTQSVADSLKAVL 280
Query: 87 KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDR 137
+PPS I R+ FD +++RRA+YSLGNYI A +I ++ K PV++DR
Sbjct: 281 LKSPPSCIGQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESAKSPVIVDR 331
>gi|609543|gb|AAA58770.1| This ORF is capable of encoding 432 aa which is similar to
thymidylate kinases especially at two domains: the
p-loop or catalytic site and the substrate binding site;
ORF [Mus musculus]
gi|1098271|prf||2115357A TYKi protein
Length = 431
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 106/213 (49%), Gaps = 14/213 (6%)
Query: 8 FAQYPSL---VSVLSILKSAQYSS-LPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVF 63
F++ P+L + L + S Q +S +PE +L++ DQ K+ +I
Sbjct: 137 FSKAPALPCSCTGLFVCFSLQCTSFIPEARAVLDLV-------DQCPKEVQKGKFQVIAI 189
Query: 64 EGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSL-LRRAYYSLGNYIAAQ 122
EGLD GK+ +Q + S S P I + E + L + NY+ A
Sbjct: 190 EGLDATGKTTLTQHFKSLSRLSSYSRHPPCIKPVEEDLLMMNLLSFEEPFILWANYLVAS 249
Query: 123 DIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYL 182
+I ++ PV++DR+WHST+ Y +A E V LP +Y WP DL+KPDLV+ L
Sbjct: 250 EIAKESTNFPVIVDRYWHSTATYAIATE-VSGGLQYLPPAHHPVYQWPGDLLKPDLVLLL 308
Query: 183 TVSEAIRLQRL-SRRKNFTLEENELKKNAKFRE 214
TV+ R++RL R + T EE EL+ N FR+
Sbjct: 309 TVNSEERVRRLQGRGQEKTKEEAELEANNVFRQ 341
>gi|350531070|ref|ZP_08910011.1| Thymidylate kinase [Vibrio rotiferianus DAT722]
Length = 189
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 93/186 (50%), Gaps = 17/186 (9%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA---HDSLLRRAYYSLG 116
IV EGLDG GKS S+ +A+KL A L +TP + +R++ D H++ R+ +Y
Sbjct: 2 FIVIEGLDGSGKSTVSKHLAEKLNAKLLTTPGAGFKEVRKQLDTVFEHNTKARQLFYMAT 61
Query: 117 NYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK 175
A + ++ + Q VV+DR+W ST Y + + N DE + +L+
Sbjct: 62 VLNVASEAQRLIDSGQNVVVDRYWLSTQVY---HHWMSNGQCYTLDEVE------SELLA 112
Query: 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENEL---KKNAKFRELLTTIYRNMNNPELVFVD 232
PDL +YL + R+ R++ R + TLE+ + + N + R L + E + VD
Sbjct: 113 PDLTVYLDLPVDERIARINNRNHCTLEDKQTLTEQANDELRGLYIGMRDRKPVGEWLMVD 172
Query: 233 NSEKSV 238
S KSV
Sbjct: 173 AS-KSV 177
>gi|397572324|gb|EJK48207.1| hypothetical protein THAOC_33012 [Thalassiosira oceanica]
Length = 747
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 81/151 (53%), Gaps = 19/151 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK-STPPSSIMSLREKFDAHDSLLRRAYYSLGNY 118
+I EGLDG GK+ +++ + SL TP ++ +R +D +L RA+Y + NY
Sbjct: 76 IIELEGLDGSGKTTLCSKLSEAIPHSLSIKTPSVALKEIRPLWDKMGGILARAFYHVSNY 135
Query: 119 IAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSD----------LKLPDEDDDIYS 168
I +I + ++ +++DR++ ST AY + N+D ++LPDE ++
Sbjct: 136 ILQHEI-MECEESIIIIDRWYASTCAYTVG---YPNTDATTLEALTPIMELPDE---VFK 188
Query: 169 WPKDL-MKPDLVIYLTVSEAIRLQRLSRRKN 198
WP DL ++P L++ + + +R +R+ R +
Sbjct: 189 WPNDLCLRPHLLLIMQIDPQVRRERVEARAS 219
>gi|397593844|gb|EJK56076.1| hypothetical protein THAOC_24103 [Thalassiosira oceanica]
Length = 414
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 80/148 (54%), Gaps = 13/148 (8%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK-STPPSSIMSLREKFDAHDSLLRRAYYSLGNY 118
+I EGLDG GK+ +++ + SL TP ++ +R +D +L RA+Y + NY
Sbjct: 76 IIELEGLDGSGKTTLCSKLSEAIPHSLSIKTPSVALKEIRPLWDKMGGILARAFYHVSNY 135
Query: 119 IAAQDIKQDLQKQPVVMDRFWHSTSAY--GMANELVKNSD-----LKLPDEDDDIYSWPK 171
I +I + + +++DR++ ST AY G N+ + ++LPDE ++ WP
Sbjct: 136 ILQHEI-MECEDSVIIIDRWYASTCAYTVGYPNKDATTLEALTPIMELPDE---VFKWPN 191
Query: 172 DL-MKPDLVIYLTVSEAIRLQRLSRRKN 198
DL ++P L++ + + +R +R+ R +
Sbjct: 192 DLCLRPHLLLIMQIDPQVRRERVEARAS 219
>gi|167523034|ref|XP_001745854.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775655|gb|EDQ89278.1| predicted protein [Monosiga brevicollis MX1]
Length = 306
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 74/158 (46%), Gaps = 8/158 (5%)
Query: 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNY 118
P V EG+DG GKS ++ +A S+ +TP R FDA LRRA+Y NY
Sbjct: 91 PFYVLEGMDGVGKSTATRGLAAAGIRSV-ATPTMPWAQHRALFDAQAEPLRRAFYFATNY 149
Query: 119 IAAQD--IKQD----LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKD 172
+A D + +D L+ VV++R ST AY A LP + + WP D
Sbjct: 150 LAVADETLMEDDDPGLKSDVVVLERLVGSTVAYATAATAGARGPAMLPRPEAPEWRWPAD 209
Query: 173 LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNA 210
L +P I+LTV ++L RL R L E NA
Sbjct: 210 LPRPAGFIWLTVDPQVQLARLQDRAA-ALTPGETSTNA 246
>gi|440685212|ref|YP_007160005.1| thymidylate kinase [Anabaena cylindrica PCC 7122]
gi|428682472|gb|AFZ61235.1| thymidylate kinase [Anabaena cylindrica PCC 7122]
Length = 210
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRA-YYS 114
+K+P + FEGLDG GK+ ++ AK+ + P ++SLR++ A +S + +YS
Sbjct: 2 KKFPFLAFEGLDGAGKTTLAELFAKQQNFDYYGSIPPELISLRKQIAATNSPISTFHFYS 61
Query: 115 LGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLM 174
L N + + + + L VV DR+ ST AY + L+ DL I ++ +
Sbjct: 62 LCNILRSYEYRLKLNDLGVVADRYVFSTFAY---HSLLMKQDL---SSYLHILQSEQNFL 115
Query: 175 KPDLVIYLTVSEAIRLQRLSRR 196
PD+++Y+T S++ QR+++R
Sbjct: 116 LPDVIVYVTASQSTINQRITQR 137
>gi|15668468|ref|NP_247266.1| thymidylate kinase [Methanocaldococcus jannaschii DSM 2661]
gi|2497577|sp|Q57741.1|KTHY_METJA RecName: Full=Probable thymidylate kinase; AltName: Full=dTMP
kinase
gi|1591015|gb|AAB98278.1| thymidylate kinase (tmk) [Methanocaldococcus jannaschii DSM 2661]
Length = 188
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 28/202 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS--LREKFDAHDSLLRRAYYSLGN 117
IVFEG+DG GK+ S+ +AKK+ A P +S++ +RE + + +L
Sbjct: 6 FIVFEGIDGSGKTTQSKLLAKKMDAFWTYEPSNSLVGKIIREILSGKTEVDNK---TLAL 62
Query: 118 YIAAQD------IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK 171
AA IK++L+K+ VV DR+ +S+ AY + +N I S +
Sbjct: 63 LFAADRIEHTKLIKEELKKRDVVCDRYLYSSIAYQSVAGVDENF----------IKSINR 112
Query: 172 DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFV 231
+KPD+V L V L+R+ + F ++ K K+ EL + +
Sbjct: 113 YALKPDIVFLLIVDIETALKRVKTKDIFEKKDFLKKVQDKYLEL-------AEEYNFIVI 165
Query: 232 DNSEKSVHESSNDIVELIHNLP 253
D ++KSV E N+I+ + N+P
Sbjct: 166 DTTKKSVEEVHNEIIGYLKNIP 187
>gi|386656247|gb|AFJ19138.1| mitochondrial cytidine monophosphate (UMP-CMP) kinase 2, partial
[Homo sapiens]
Length = 66
Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 71 KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
K+ +Q+VA LKA L +PPS I R+ FD +++RRA+YSLGNYI A +I ++ K
Sbjct: 1 KTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESAK 60
Query: 131 QPVVMD 136
PV++D
Sbjct: 61 SPVIVD 66
>gi|85057461|ref|YP_456377.1| thymidylate kinase [Aster yellows witches'-broom phytoplasma AYWB]
gi|84789566|gb|ABC65298.1| thymidylate kinase [Aster yellows witches'-broom phytoplasma AYWB]
Length = 210
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 27/159 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS------LKSTPPSSIM-SLREKFDAHDSL--LRR 110
LI+FEGLDG GK+ ++V ++L+ ++ S+I S+RE F H++L L R
Sbjct: 3 LIIFEGLDGSGKTSLIKSVQQELQKQGNEVVVIRGLGSSTIGNSIRETFLTHNNLHNLTR 62
Query: 111 AYYSLGNYIAAQD--IKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
+ S N I Q+ IK L+ +++ DR+ S AY + P + D Y
Sbjct: 63 YFLSFANMIQTQEECIKHQLKTNKIILVDRWLGSNFAYRV-----------YPSKIDKNY 111
Query: 168 ----SWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE 202
+ K +KPD+ IYL + + L+R +KN L+
Sbjct: 112 HIFNNLSKKFIKPDITIYLKIHPQLGLERKINQKNHQLD 150
>gi|452877103|ref|ZP_21954420.1| thymidylate kinase [Pseudomonas aeruginosa VRFPA01]
gi|452186100|gb|EME13118.1| thymidylate kinase [Pseudomonas aeruginosa VRFPA01]
Length = 186
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
K+ + EG+DG GKS + +A +L A TP + R++ + S + + L
Sbjct: 2 KHLFVTIEGIDGAGKSTVVRMLANRLGAVCIKTPDERFSTERQRIERQGSTEEKYAFYLH 61
Query: 117 NYIAAQ-DIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK 175
+ A Q +I L++ PV+ DR+ HST AY LP DI L +
Sbjct: 62 SLEAQQVEINALLERGPVICDRYIHSTIAYQWPEA------KPLP---VDIAECFPSLAR 112
Query: 176 PDLVIYLTVSEAIRLQRLSRRKNFT 200
PD I LTVS + +R++RR++ T
Sbjct: 113 PDHSILLTVSSEVSRERIARREHQT 137
>gi|85057354|ref|YP_456270.1| thymidylate kinase [Aster yellows witches'-broom phytoplasma AYWB]
gi|84789459|gb|ABC65191.1| thymidylate kinase [Aster yellows witches'-broom phytoplasma AYWB]
Length = 210
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 27/159 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK------ASLKSTPPSSIM-SLREKFDAHDSL--LRR 110
LI+FEGLDG GK+ ++V ++L+ +++ S+I S+RE F H++L L R
Sbjct: 3 LIIFEGLDGSGKTSLIKSVQQELQKQGNEVVAIRGLGSSTIGNSIRETFLTHNTLHNLTR 62
Query: 111 AYYSLGNYIAAQD--IKQDLQKQPVVMDRFW-HSTSAYGMANELVKNSDLKLPDEDDDIY 167
+ S N I Q+ IK LQ +++ + W S AY + P + D Y
Sbjct: 63 YFLSFANMIQNQEESIKPHLQTNKIILVKRWLGSNFAYRV-----------YPSKIDKNY 111
Query: 168 ----SWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE 202
+ K +KP++ IYL + + L+R +KN L+
Sbjct: 112 HIFNNLSKKFIKPNITIYLKIHPQLGLERKINQKNHQLD 150
>gi|260943900|ref|XP_002616248.1| hypothetical protein CLUG_03489 [Clavispora lusitaniae ATCC 42720]
gi|238849897|gb|EEQ39361.1| hypothetical protein CLUG_03489 [Clavispora lusitaniae ATCC 42720]
Length = 208
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 33/205 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL-----KSTPPSSIMS---LREKFDAHDSLLRRA 111
LI+ EGLD GKS ++ +A L A L +STP +++ + FD D
Sbjct: 5 LILIEGLDRSGKSTQAENLASALDAQLYKFPDRSTPVGKLINEYLVNSSFDLSDE-AAHL 63
Query: 112 YYSLGNYIAAQDIKQD-LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
+S + A +++ L+ Q +V+DR+ +S AY +A + + + +YS
Sbjct: 64 LFSANRWEVAHEMEATLLRGQNIVLDRYIYSGIAYSLAKSSLNDYEW--------LYSPD 115
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNP---- 226
K L KPDL ++LT I L+ LSRRK + E E + F+ + + + +P
Sbjct: 116 KGLPKPDLTLFLT----IDLEELSRRKGWGDERYE---KSAFQAKVKQCFMQILDPEKDS 168
Query: 227 --ELVFVDNSEKSVHESSNDIVELI 249
E+V VDN S+ + ++E+I
Sbjct: 169 SVEIVNVDNL--SIEQVKAKLMEII 191
>gi|39939174|ref|NP_950940.1| thymidylate kinase [Onion yellows phytoplasma OY-M]
gi|39722283|dbj|BAD04773.1| thymidylate kinase [Onion yellows phytoplasma OY-M]
Length = 209
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 27/159 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS------LKSTPPSSIM-SLREKFDAHDSL--LRR 110
LI+FEGLDG GK+ ++V LK ++ S+I S+RE F H+ L L R
Sbjct: 3 LIIFEGLDGSGKTGLIKSVKHGLKKQGKEVIVIRGLGSSTIGESIRETFLTHNKLHNLTR 62
Query: 111 AYYSLGNYIAAQD--IKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
+ S N I Q+ IK L+ +++ DR+ S AY + P+ D Y
Sbjct: 63 YFLSFANMIQTQEELIKPHLETNKIILVDRWLGSNFAYRV-----------YPNRIDKKY 111
Query: 168 SWPKDL----MKPDLVIYLTVSEAIRLQRLSRRKNFTLE 202
+ +L +KP+L +YL + L R + + N TL+
Sbjct: 112 YFFNNLTKLFIKPNLTVYLKIDPQTGLNRKANQTNHTLD 150
>gi|226942414|ref|YP_002797487.1| thymidylate kinase [Azotobacter vinelandii DJ]
gi|226717341|gb|ACO76512.1| Thymidylate kinase [Azotobacter vinelandii DJ]
Length = 189
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 21/199 (10%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA--HDSLLRRAYYSLGN 117
IV E LDG GK+ ++ +A L S P +I LRE A D+ + A + L
Sbjct: 4 FIVIESLDGVGKTTLTRNLAAALGGIAMSMPGPAIKPLREPIQAALGDARIAHALFYL-A 62
Query: 118 YIAAQDIKQDL---QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLM 174
AA+ + + VVMDRF ST AY A + + D LP L
Sbjct: 63 VAAAEGTRARAATDAGRSVVMDRFLASTIAYARARGVDADFDALLP-----------ALP 111
Query: 175 KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
+PD+ + LT+ E R++RL R +L + + + FR + + + + VD +
Sbjct: 112 RPDVSVLLTLDEDERIRRLGARGEMSLADIQ-SLDPTFRGV---VMAELGGRCDLQVDVT 167
Query: 235 EKSVHESSNDIVELIHNLP 253
E+ ++ I LP
Sbjct: 168 GADEEEAVRRVIGAIGCLP 186
>gi|85057562|ref|YP_456478.1| thymidylate kinase [Aster yellows witches'-broom phytoplasma AYWB]
gi|84789667|gb|ABC65399.1| thymidylate kinase [Aster yellows witches'-broom phytoplasma AYWB]
Length = 209
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 27/159 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS------LKSTPPSSIM-SLREKFDAHDSL--LRR 110
LI+FEGLDG GK+ ++V LK ++ S+I S+RE F H+ L L R
Sbjct: 3 LIIFEGLDGSGKTGLIKSVKHGLKKQGKEVIVIRGLGSSTIGESIRETFLTHNKLHNLTR 62
Query: 111 AYYSLGNYIAAQD--IKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
+ S N I Q+ IK L+ +++ DR+ S AY + P+ D Y
Sbjct: 63 YFLSFANMIQTQEELIKPHLETNKIILVDRWLGSNFAYRV-----------YPNRIDKKY 111
Query: 168 SWPKDL----MKPDLVIYLTVSEAIRLQRLSRRKNFTLE 202
+ +L +KP+L +YL + L R + + N TL+
Sbjct: 112 YFFNNLTKLFIKPNLTVYLKIDPQTGLNRKANQTNHTLD 150
>gi|255513756|gb|EET90021.1| thymidylate kinase [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 215
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 9/148 (6%)
Query: 59 PLIVFEGLDGCGKSHTSQTVAKKL-KASLKSTP-PSSIMSLREKF--DAHDSLLRRAYYS 114
P IV EG++G GK+ S +A+ L A + TP P + L+E F + + + R ++
Sbjct: 2 PFIVVEGVNGAGKTVASSKLAEALGNAQIVKTPMPGFLEELKEYFVRNQENIVARVTFFD 61
Query: 115 LGNYIAAQDIKQDLQKQP---VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK 171
I+ L + P V+ DR+W+ST A +A + V N K DE +I + K
Sbjct: 62 AATKHTCDLIRDMLCRDPNRFVIADRYWYSTMASHLAYDRVFNGS-KSRDEIIEIMNISK 120
Query: 172 D-LMKPDLVIYLTVSEAIRLQRLSRRKN 198
++PDLVI + V R +R++ RK+
Sbjct: 121 KYFIRPDLVILIDVDPEERRRRIALRKD 148
>gi|90411356|ref|ZP_01219368.1| putative hymidylate kinase [Photobacterium profundum 3TCK]
gi|90327885|gb|EAS44216.1| putative hymidylate kinase [Photobacterium profundum 3TCK]
Length = 203
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 18/144 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDS----LLRRAYYSL 115
IV+EGLD CGK+ S AK+ K+ + S + LR+ D++ S LL ++ +
Sbjct: 4 FIVYEGLDACGKTTLSSLYAKERKSVVHSAVVEEALGLRKVIDSYQSKESALL---FFLM 60
Query: 116 GNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMA---NELVKNSDLKLPDEDDDIYSWPKD 172
NY+ + ++ L+ V++DR++ ST AY A +VKN D + ++
Sbjct: 61 NNYLKSHEVAGALESGDVILDRYFFSTLAYQTALLSESIVKNI--------VDTLNTTQN 112
Query: 173 LMKPDLVIYLTVSEAIRLQRLSRR 196
++ P++++++ +R+ R
Sbjct: 113 ILLPEVIVFVKADAETINKRIEAR 136
>gi|339494850|ref|YP_004715143.1| Thymidylate kinase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
gi|338802222|gb|AEJ06054.1| Thymidylate kinase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
Length = 190
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKF---DAHDSLLRRAYYSLG 116
I EGLDG GKS Q +A STP +++ R+ A D L + +Y+
Sbjct: 4 FIAVEGLDGVGKSTVVQQLAGCFSGHAMSTPGAALRECRQAVLHAFAEDELAKALFYTAS 63
Query: 117 NYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK 175
+ ++ ++ + V MDR+W ST AY A + +I + L++
Sbjct: 64 VSSQGRQARKKAERGEWVFMDRYWASTFAYAKARGVTA-----------EIETLSLSLIQ 112
Query: 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENE 205
PDL + L ++E+ R +RL R T+E+ E
Sbjct: 113 PDLTVLLLLNESERQRRLHAR-GATVEDME 141
>gi|398337732|ref|ZP_10522437.1| thymidylate kinase [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 202
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 20/155 (12%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKA----SLKSTPPSSIMS---LREKFDAHDSL 107
++K IVFEG+DG GKS +++ +KL A S+ T P+S+ + LR+ L
Sbjct: 3 NKKPFFIVFEGIDGSGKSTLCKSLTEKLSARGISSIGFTEPTSLETGKYLRKFLRGEIEL 62
Query: 108 LR----RAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
R A+ + N Q+I L+ + V++DR+ +ST+AY +L + LK
Sbjct: 63 GREEQIEAFLNDRNESLRQNILPSLESGKNVLLDRYMYSTAAYQSGEDLSPETILK---- 118
Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ ++ PD++ YL + I L+RL RRK
Sbjct: 119 ----KNLERNFKTPDVLFYLDLKPEIALERLDRRK 149
>gi|374635134|ref|ZP_09706738.1| thymidylate kinase [Methanotorris formicicus Mc-S-70]
gi|373563324|gb|EHP89523.1| thymidylate kinase [Methanotorris formicicus Mc-S-70]
Length = 185
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 29/200 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS--LREKFDAHDSLLRRAYYSLGN 117
IVFEG+DG GK+ ++ +AKKL A P ++ +RE + +L
Sbjct: 3 FIVFEGIDGSGKTTQAKLLAKKLNAFYTYEPTDGLIGRLIREILKGEKKCEKE---TLAL 59
Query: 118 YIAAQD------IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK 171
AA I++ L++ VV DR+ +S+ AY + + ++D I +
Sbjct: 60 MFAADRVEHIRLIEEKLRESHVVCDRYLYSSIAYQTSQGV----------DEDFILQINR 109
Query: 172 DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-NAKFRELLTTIYRNMNNPELVF 230
KPD+V+ LTV ++RL + K +E LKK K+ EL + +
Sbjct: 110 FAKKPDVVVLLTVDIEEGIKRLGKEKEIFEKERFLKKVQNKYLEL-------AKKEDFIV 162
Query: 231 VDNSEKSVHESSNDIVELIH 250
+D + +S+ + D++ I+
Sbjct: 163 IDTTNRSIDDVHEDVLNQIN 182
>gi|392403577|ref|YP_006440189.1| thymidylate kinase [Turneriella parva DSM 21527]
gi|390611531|gb|AFM12683.1| thymidylate kinase [Turneriella parva DSM 21527]
Length = 209
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 29/167 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-KASLKSTPPSSIMSLREKFDAHDSLLR--RAYYSLG 116
IVFEG+DG GKS T VA++L A K+T + EK DA + R R S+
Sbjct: 5 FIVFEGIDGSGKSTTITAVAERLNTAGYKTT---QLREPTEKTDASREIRRILRTAESID 61
Query: 117 NYIAAQ-----------DIKQDLQ-----KQPVVMDRFWHSTSAYGMANELVKNSDLKLP 160
I+ DIK ++ V++DR++ STSAY A+ N K+
Sbjct: 62 AKISRDLLELFLIDRLWDIKHQIEPAIRAGSIVLLDRYFISTSAYQAAD---TNETQKIM 118
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELK 207
+ Y +++PDLVIYL + A L+RLS R + E E +
Sbjct: 119 QD----YLGDTRILRPDLVIYLNLPVATALRRLSGRGARDVFETEAR 161
>gi|70984984|ref|XP_747998.1| thymidylate kinase [Aspergillus fumigatus Af293]
gi|66845626|gb|EAL85960.1| thymidylate kinase [Aspergillus fumigatus Af293]
gi|159126077|gb|EDP51193.1| thymidylate kinase [Aspergillus fumigatus A1163]
Length = 221
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 102/207 (49%), Gaps = 33/207 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDAHDSL 107
LIVFEGLD GKS + + L+AS ++TP ++S L+ + A D
Sbjct: 10 LIVFEGLDRAGKSSQCERLRDSLQASGHSVKYIRFPDRTTPIGKLISSYLQGQSQADDHS 69
Query: 108 LRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDI 166
+ +S + A+ I+ D+ V++DR+ +S + Y A N +L L
Sbjct: 70 I-HLLFSANRWEIAKSIEDDIANGISVIVDRYSYSGAVYSAAK---GNPNLSLE------ 119
Query: 167 YSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFRELLTTIYRN 222
++W + L +PD+ ++L +S + ++R F +E ENE +N + REL T++ +
Sbjct: 120 WAWQPEIGLPQPDMCLFLRISP----EEAAKRGGFGVERYENETMQN-RVRELFQTLF-D 173
Query: 223 MNNPELVFVDNSEKSVHESSNDIVELI 249
+ + + ++ +S S DI++++
Sbjct: 174 LQQGDYIHTIDAGRSFDAVSQDIMKIV 200
>gi|116330468|ref|YP_800186.1| thymidylate kinase [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|122281774|sp|Q04UJ2.1|KTHY_LEPBJ RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|116124157|gb|ABJ75428.1| Thymidylate kinase [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
Length = 205
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 20/150 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMS---LREKFDAHDSLLRR-- 110
+VFEG+DG GKS +++ +KL S+ T P++ + LR+ L R+
Sbjct: 8 FVVFEGIDGSGKSTLCKSLTEKLTERGIPSVNFTEPTNFETGKYLRKFLRGEIDLERKEQ 67
Query: 111 --AYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
A+ + Q+I L+ + V++DR+ +ST+AY ++L+ + ++
Sbjct: 68 IDAFLNDREESLRQNILPSLESGKNVLLDRYMYSTAAYQSGDDLLPETIIE--------K 119
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ K+ PDL+ YL ++ AI L+RLS+RK
Sbjct: 120 NLKKNFKIPDLLFYLDLNPAIALERLSQRK 149
>gi|116328926|ref|YP_798646.1| thymidylate kinase [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|122283291|sp|Q04YY2.1|KTHY_LEPBL RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|116121670|gb|ABJ79713.1| Thymidylate kinase [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
Length = 205
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 20/150 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMS---LREKFDAHDSLLRR-- 110
+VFEG+DG GKS +++ +KL S+ T P++ + LR+ L R+
Sbjct: 8 FVVFEGIDGSGKSTLCKSLTEKLTERGIPSVNFTEPTNFETGKYLRKFLRGEIDLERKEQ 67
Query: 111 --AYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
A+ + Q+I L+ + V++DR+ +ST+AY ++L+ + ++
Sbjct: 68 IDAFLNDREESLRQNILPSLESGKNVLLDRYMYSTAAYQSGDDLLPETIIE--------K 119
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ K+ PDL+ YL ++ AI L+RLS+RK
Sbjct: 120 NLKKNFKIPDLLFYLDLNPAIALERLSQRK 149
>gi|134045602|ref|YP_001097088.1| thymidylate kinase [Methanococcus maripaludis C5]
gi|166221754|sp|A4FXE4.1|KTHY_METM5 RecName: Full=Probable thymidylate kinase; AltName: Full=dTMP
kinase
gi|132663227|gb|ABO34873.1| dTMP kinase [Methanococcus maripaludis C5]
Length = 199
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 38/212 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM--SLREKFDAHDSLLRRAYYSLGN 117
IVFEG+DGCGK+ ++ +A+KL A P + S+RE +L
Sbjct: 4 FIVFEGIDGCGKTTQAKLIAEKLNAKFTFEPTDGKIGKSIREILSGSQCQKE----TLAL 59
Query: 118 YIAAQ------DIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK 171
AA +I++DL+K VV DR+ +S+ Y ++ + K D IY+
Sbjct: 60 LFAADRVEHVFNIEEDLKKSHVVSDRYVYSSIIYQISQGISK----------DFIYTIND 109
Query: 172 DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPE---- 227
PDLV+ L V L+R+ R+ E+ E++K K Y N+ N E
Sbjct: 110 YAKTPDLVVLLDVDLNEALKRMESREKEIFEKIEIQKKIK------EGYYNLINSEDKKF 163
Query: 228 -----LVFVDNSEKSVHESSNDIVE-LIHNLP 253
+ V+ + KS+H+ ++I+ +I +P
Sbjct: 164 MPKYGFIIVNTTSKSIHQVFDEILNAIIDKIP 195
>gi|418718417|ref|ZP_13277950.1| dTMP kinase [Leptospira borgpetersenii str. UI 09149]
gi|418737480|ref|ZP_13293877.1| dTMP kinase [Leptospira borgpetersenii serovar Castellonis str.
200801910]
gi|421093637|ref|ZP_15554361.1| dTMP kinase [Leptospira borgpetersenii str. 200801926]
gi|410363620|gb|EKP14649.1| dTMP kinase [Leptospira borgpetersenii str. 200801926]
gi|410744779|gb|EKQ93515.1| dTMP kinase [Leptospira borgpetersenii str. UI 09149]
gi|410746674|gb|EKQ99580.1| dTMP kinase [Leptospira borgpetersenii serovar Castellonis str.
200801910]
gi|456888965|gb|EMF99896.1| dTMP kinase [Leptospira borgpetersenii str. 200701203]
Length = 205
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 20/150 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMS---LREKFDAHDSLLRR-- 110
+VFEG+DG GKS +++ +KL S+ T P++ + LR+ L R+
Sbjct: 8 FVVFEGIDGSGKSTLCKSLTEKLTERGIPSVNFTEPTNFETGKYLRKFLRGEIDLERKEQ 67
Query: 111 --AYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
A+ + Q+I L+ + V++DR+ +ST+AY ++L+ + ++
Sbjct: 68 IDAFLNDREESLRQNILPSLESGKNVLLDRYMYSTAAYQSGDDLLPETIIE--------K 119
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ K+ PDL+ YL ++ AI L+RLS+RK
Sbjct: 120 NLKKNFKIPDLLFYLDLNPAIALERLSQRK 149
>gi|333910307|ref|YP_004484040.1| thymidylate kinase [Methanotorris igneus Kol 5]
gi|333750896|gb|AEF95975.1| Thymidylate kinase [Methanotorris igneus Kol 5]
Length = 198
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 29/202 (14%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS--LREKFDAHDSLLRRAYYS 114
K IVFEG+DG GK+ ++ + KKL A P + +RE + +
Sbjct: 3 KRMFIVFEGIDGSGKTTQAKLLTKKLNAFYTCEPTEGQIGRLIREILKGKKKCEKE---T 59
Query: 115 LGNYIAA------QDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168
L AA + I++ L++ VV DR+ +S+ AY + + ++D I
Sbjct: 60 LALLFAADRVEHVKLIEEKLKESHVVCDRYLYSSIAYQTSQGV----------DEDFILQ 109
Query: 169 WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPE- 227
+ KPD+V+ LTV ++RL + K +E LKK + Y + E
Sbjct: 110 INRFAKKPDIVVLLTVDVEEGMKRLGKEKEIFEKEEFLKK-------VQNKYLKLAKKEG 162
Query: 228 LVFVDNSEKSVHESSNDIVELI 249
+ +D + KS++ES +I+++I
Sbjct: 163 FIVIDTTNKSINESHEEILKII 184
>gi|358371633|dbj|GAA88240.1| thymidylate kinase [Aspergillus kawachii IFO 4308]
Length = 224
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 37/209 (17%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKA---SLK-------STPPS----SIMSLREKF 101
R+ LIV EGLD GKS +++ +KL+ S+K +TP S + + +
Sbjct: 9 RRGALIVVEGLDRAGKSSQCESLHQKLQELGHSVKYIRFPDRTTPIGKLIDSYLRGQSQL 68
Query: 102 DAHDSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLP 160
D H L +S + AQ I++D+ V++DR+ +S + Y A N L L
Sbjct: 69 DDHSIHL---LFSANRWEIAQAIEEDIAAGITVIVDRYSYSGAVYSAAK---ANPTLSLE 122
Query: 161 DEDDDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFRELL 216
++W + L +PDL ++L+++ ++R F E ENE + + REL
Sbjct: 123 ------WAWTPEIGLPQPDLCVFLSIAP----DEAAKRGGFGAERYENETMQT-RVRELF 171
Query: 217 TTIYRNMNNPELVFVDNSEKSVHESSNDI 245
TI+R + ++ +D + +S S DI
Sbjct: 172 QTIFRVQRSGDIRVID-AGRSFEAVSVDI 199
>gi|255513638|gb|EET89903.1| thymidylate kinase [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 218
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 102/211 (48%), Gaps = 30/211 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFD------------AHDSL 107
++ EG DG GKS S +++++ P S ++ ++ D A D +
Sbjct: 3 ILAIEGCDGSGKSTISAMLSERM-------PGSKVIEQSKRVDFLPDLRDFLNGQAGDLI 55
Query: 108 LRRAYYSLG-NYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDD 165
L R Y LG N +++ + ++ +K ++ R +ST AY A + + + D +D
Sbjct: 56 LARLIYFLGTNQLSSNEAAENERKGIDTILVRSIYSTKAYHFAYDALYDGDANKSVINDI 115
Query: 166 IYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY----- 220
+ S + L+ PD+V++L V + R++R++RR+ ++ + L ++K + + +
Sbjct: 116 VASAERSLVHPDIVVFLHVGKEERVRRIARRE--AVKNSSLDWDSKIMAFIDSEFYKYAA 173
Query: 221 --RNMNNPELVFVDNSEKSVHESSNDIVELI 249
R +++ +DN+ + E+ + I+ I
Sbjct: 174 ELRERGKAQVIEIDNTNLTPEETVDCIISKI 204
>gi|48478173|ref|YP_023879.1| thymidylate kinase [Picrophilus torridus DSM 9790]
gi|73920826|sp|Q6L016.1|KTHY_PICTO RecName: Full=Probable thymidylate kinase; AltName: Full=dTMP
kinase
gi|48430821|gb|AAT43686.1| putative thymidylate kinase [Picrophilus torridus DSM 9790]
Length = 202
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 19/148 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS--LREKFDAHDSLLRRAYYSLGN 117
I EG+DG GK+ + +A L P + ++ S++ ++L
Sbjct: 8 FIAIEGIDGSGKTTLAGDIASYTGFYLTREPTDRFCYDYIEADYNDESSIINFFLFTLDR 67
Query: 118 YIAAQDIKQDLQKQPVVMDRFWHSTSAY---GMANELVKNSDLKLPDEDDDIYSWPKD-- 172
Y+ ++IK L V+ DR+ S+ AY GM KN D + SW D
Sbjct: 68 YMHQKEIKNHLI-NGVISDRYVFSSIAYQGSGMEKRF-KNMDETI--------SWMLDVS 117
Query: 173 --LMKPDLVIYLTVSEAIRLQRLSRRKN 198
++ PDL+IYL + I L+RL+ RKN
Sbjct: 118 RFIIMPDLIIYLKIDPGIALKRLNLRKN 145
>gi|340345680|ref|ZP_08668812.1| Thymidylate kinase [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339520821|gb|EGP94544.1| Thymidylate kinase [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 193
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 93/211 (44%), Gaps = 46/211 (21%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA-SLKSTPPS-------------SIMSLREKFD--- 102
+IV EG D GK + +AK LK +K+T S ++ + KF
Sbjct: 2 IIVIEGGDQAGKKTQTALLAKALKQRKIKTTTFSFPDYKTPVGKEIAKYLNCKRKFPPQV 61
Query: 103 AHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANEL----VKNSDLK 158
H L + L +AAQ + V+M+R++HS YG+AN + +KN D
Sbjct: 62 IHCLLAANRWEKLNEILAAQS-----KNSIVIMNRYYHSNLIYGLANGMKSKWLKNLDDG 116
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT 218
LP K DLVI L V+ QR S R+ T ++ +KN +F ++
Sbjct: 117 LP--------------KADLVILLDVT-----QRESFRRKKT-NRDKFEKNEEFLRKISK 156
Query: 219 IYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
IYR + E + ++ KS E +I++ I
Sbjct: 157 IYRTIAKKEYWKIIDASKSKQEVHENILKAI 187
>gi|119498863|ref|XP_001266189.1| thymidylate kinase [Neosartorya fischeri NRRL 181]
gi|119414353|gb|EAW24292.1| thymidylate kinase [Neosartorya fischeri NRRL 181]
Length = 221
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 33/210 (15%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDAH 104
+ LIV EGLD GKS + + L+AS ++TP ++S L+ + A
Sbjct: 7 RGALIVVEGLDRAGKSSQCERLRDSLQASGHSVKYIRFPDRTTPIGKLISSYLQGQSQAD 66
Query: 105 DSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
D + +S + A+ I+ D+ V++DR+ +S + Y A N +L L
Sbjct: 67 DHSI-HLLFSANRWEIAKSIEDDIANGISVIVDRYSYSGAVYSAAK---GNRNLSLE--- 119
Query: 164 DDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFRELLTTI 219
++W + L +PD+ ++L +S + ++R F +E ENE +N + REL T+
Sbjct: 120 ---WAWQPEIGLPQPDMCLFLRISP----EEAAKRGGFGVERYENETMQN-RVRELFQTL 171
Query: 220 YRNMNNPELVFVDNSEKSVHESSNDIVELI 249
+ ++ + V ++ +S S DI++++
Sbjct: 172 F-DLQQGDYVHTIDAGRSFDAVSQDIMKIV 200
>gi|288932600|ref|YP_003436660.1| thymidylate kinase [Ferroglobus placidus DSM 10642]
gi|288894848|gb|ADC66385.1| thymidylate kinase [Ferroglobus placidus DSM 10642]
Length = 204
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 94/209 (44%), Gaps = 50/209 (23%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS----------LRE---KFDAHDS 106
LI EG+DG GK+ + V ++L LK P+ ++ ++E +FD
Sbjct: 3 LIAVEGIDGAGKTTIANFVREEL---LKLGIPAIVLKEPTEGKYGKIIKESEKRFDPEKE 59
Query: 107 LLRRAYYSLGNYIAAQDIKQDLQKQ---------PVVMDRFWHSTSAYGMANELVKNSDL 157
L + D K+D++K V+MDR+++S+ AY A L L
Sbjct: 60 L----------ELFILDRKEDVEKNILPALNKGISVIMDRYYYSSVAYQGARGLDPEEIL 109
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
K+ + + PDL I L V I L+R+ RK T E EL+ K RE+
Sbjct: 110 KVNESIAPV---------PDLTIILDVEPEIALKRIKNRKKLTPFE-ELEYLKKVREIFL 159
Query: 218 TIYRNMNNPELVFVDNSEKSVHESSNDIV 246
+I R PE+ VD S KS+ E ++++
Sbjct: 160 SIKR----PEIRVVDAS-KSLEEVKDEVI 183
>gi|440300143|gb|ELP92632.1| thymidylate kinase, putative [Entamoeba invadens IP1]
Length = 208
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 35/206 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA-SLKS-TPP-----SSIMSLREKFDAHDSLLRRAY 112
L+V EG+D CGKS S +V +KL + +KS T P +++ L + F +L ++A
Sbjct: 6 LVVLEGIDQCGKSSASVSVCQKLNSEGIKSVTQPFPDRSTAVGKLIDDFLHGKNLPQQAV 65
Query: 113 ---YSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168
YS + A+ I++++ + VV DR+ S Y +AN L K+PD
Sbjct: 66 HLLYSANRWEVAKIIEKNINEGVTVVCDRYAFSGIVYSIANGL-DPEWCKIPDS------ 118
Query: 169 WPKDLMKPDLVIYLTVS--EAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNP 226
L KPD+V +L +S EA R RRK+ + E N +F++ + + + M N
Sbjct: 119 ---GLPKPDIVCFLELSLDEADR-----RRKSLVADRYE---NVEFQKKVKSEFEKMKN- 166
Query: 227 ELVFVDNSEKSVHESSNDIVELIHNL 252
EL++ + +++ +VE I N+
Sbjct: 167 ELLW---TSVDANQNRKKVVEDICNI 189
>gi|261403129|ref|YP_003247353.1| thymidylate kinase [Methanocaldococcus vulcanius M7]
gi|261370122|gb|ACX72871.1| thymidylate kinase [Methanocaldococcus vulcanius M7]
Length = 187
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 24/196 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS--LREKFDAH---DSLLRRAYYS 114
IVFEG+DG GK+ S+ +AK + A P +S++ +R+ + D +S
Sbjct: 2 FIVFEGIDGSGKTTISKKLAKSINAFWTYEPSNSVVGELIRKILSGNVKVDDKTLALLFS 61
Query: 115 LGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLM 174
+ IK++L+ + VV DR+ +S+ AY + ++D I S + +
Sbjct: 62 ADRIEHNKKIKEELRYRDVVCDRYLYSSIAYQSVAGV----------DEDFIRSINRYAL 111
Query: 175 KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPE-LVFVDN 233
KPDLV L L+R++ + F +E F E + Y ++ E V +D
Sbjct: 112 KPDLVFLLICDIETALKRINTKDIFEKKE--------FLEKVQEKYLDLAKKEGFVIIDT 163
Query: 234 SEKSVHESSNDIVELI 249
++++V + +++ + +
Sbjct: 164 TDRTVEDVYSEVFKTV 179
>gi|410938246|ref|ZP_11370101.1| dTMP kinase [Leptospira noguchii str. 2006001870]
gi|410786664|gb|EKR75600.1| dTMP kinase [Leptospira noguchii str. 2006001870]
Length = 204
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 20/155 (12%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKL----KASLKSTPPSSIMS---LREKFDAHDSL 107
++K +VFEG+DG GKS +++ KKL S+ T P+++ + LR+ L
Sbjct: 3 NKKPIFVVFEGIDGSGKSTLCRSLTKKLIELGIPSVTFTEPTNLETGKYLRKFLRGEIEL 62
Query: 108 LRRAYYSLGNYIAAQDIKQDL-----QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
+ + +KQ++ + V++DR+ +ST+AY ++L LK
Sbjct: 63 GKEEQIQAFLNDREESLKQNILPALNSDKNVLLDRYMYSTAAYQSGDDLSPEIILK---- 118
Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ ++ PDL+ YL +S I L+RL+RRK
Sbjct: 119 ----KNLDRNFKIPDLLFYLDLSPTIALERLNRRK 149
>gi|145503822|ref|XP_001437883.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124405044|emb|CAK70486.1| unnamed protein product [Paramecium tetraurelia]
Length = 205
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 31/164 (18%)
Query: 54 DDRKYPLIVFEGLDGCGKSHTSQTV-----AKKLKASLKSTPPSSIMS--LREKFDAHDS 106
++R+ IV EGLD CGKS ++ + AKK++ +ST I+S L+ K D +D
Sbjct: 3 NNRRGLFIVLEGLDKCGKSTQTELLSEALDAKKMQFPDRSTSMGLIISDYLKGKRDINDQ 62
Query: 107 LLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHS----TSAYGMANELVKNSDLKLPD 161
++ +S + A I + L K +V DR+ +S +SA G+ + K D LP
Sbjct: 63 VI-HLLFSANRWEAQNTIIETLNKGINIVCDRYAYSGVAFSSAKGLPIQWCKQCDSGLP- 120
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE 205
KPDLVIYL +++L R +F E E
Sbjct: 121 -------------KPDLVIYLRAP----IKQLKDRGDFGAERYE 147
>gi|383786633|ref|YP_005471202.1| thymidylate kinase [Fervidobacterium pennivorans DSM 9078]
gi|383109480|gb|AFG35083.1| thymidylate kinase [Fervidobacterium pennivorans DSM 9078]
Length = 199
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 26/207 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS----LKSTPPSSI--------MSLREKFDAHDSL 107
+ FEG+DGCGKS + K L++ +K P + + E+ + L
Sbjct: 2 FVSFEGIDGCGKSTQIEMFTKYLQSKGIEFVKVREPGGTKLGEKIRQLLISEEMTSRSEL 61
Query: 108 LRRAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAY-GMANELVKNSDLKLPDEDDD 165
L + + + + IK L++ + VV DRF HS+ AY G L + L D
Sbjct: 62 L--LFLASRAQLVEEVIKPALEEGKIVVADRFAHSSVAYQGCGRNLGIDVVKMLND---- 115
Query: 166 IYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNN 225
+ D + PDLV Y+ + + + R+++ + +E+ L+ K R + +N N
Sbjct: 116 ---FATDHVYPDLVFYIDIPAEVAISRINKEQRDRIEQEGLEFFEKVRNCYLELCKNEKN 172
Query: 226 PELVFVDNSEKSVHESSNDIVELIHNL 252
V +D + K V S I+ + L
Sbjct: 173 --FVLIDGT-KDVETISKQIIRIFEGL 196
>gi|294658466|ref|XP_460810.2| DEHA2F10252p [Debaryomyces hansenii CBS767]
gi|202953154|emb|CAG89151.2| DEHA2F10252p [Debaryomyces hansenii CBS767]
Length = 218
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 15/156 (9%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL------KSTPPSSIMS---LREKFDAHDSLLRR 110
LI+ EGLD GKS S ++++L +ST SI++ + + D
Sbjct: 6 LILIEGLDRSGKSTQSGILSERLPGGKLIKFPDRSTKVGSIINEYLTNSELNLSDQT-AH 64
Query: 111 AYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
+S + A I DL K +VMDR+ +S AY +A N D +YS
Sbjct: 65 LLFSANRWELADSIVNDLNKGHFIVMDRYIYSGIAYSLAKSRFSNDSSPEMASIDWLYSP 124
Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE 205
K L KPDL I+LT+S L+ LS RK + E E
Sbjct: 125 DKGLPKPDLTIFLTLS----LEELSNRKGWGEERYE 156
>gi|448089627|ref|XP_004196858.1| Piso0_004086 [Millerozyma farinosa CBS 7064]
gi|448093932|ref|XP_004197889.1| Piso0_004086 [Millerozyma farinosa CBS 7064]
gi|359378280|emb|CCE84539.1| Piso0_004086 [Millerozyma farinosa CBS 7064]
gi|359379311|emb|CCE83508.1| Piso0_004086 [Millerozyma farinosa CBS 7064]
Length = 220
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 15/202 (7%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL------KASLKSTPPSSIMS--LREKFDAHDSLLRRA 111
LI+ EGLD GKS S + ++L K +ST S+++ L K D
Sbjct: 9 LILIEGLDRSGKSTQSALLQRQLPNCELLKFPDRSTRVGSLINDYLTGKTQLSDQS-AHL 67
Query: 112 YYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
+S + A+ I++ L Q + +V+DR+ +S AY +A L + + +YS
Sbjct: 68 LFSANRWELAKSIEEKLLQGKFIVLDRYIYSGIAYSLAKSLSNDESSPEMKSVEWLYSPD 127
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKKNAKFRELLTTIYRNMNNPELV 229
K L KPDL ++L++ + L+RRK + E E ++ K RE + +++ L
Sbjct: 128 KGLPKPDLTLFLSLPT----EELARRKGWGEERYEDVEFQKKVRECFLRVLQDIPQDHLE 183
Query: 230 FVDNSEKSVHESSNDIVELIHN 251
++ S+ S+ + + I E+I +
Sbjct: 184 IINVSDLSIEQVKSHIWEVIES 205
>gi|374633954|ref|ZP_09706319.1| thymidylate kinase [Metallosphaera yellowstonensis MK1]
gi|373523742|gb|EHP68662.1| thymidylate kinase [Metallosphaera yellowstonensis MK1]
Length = 189
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 19/172 (11%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPS-SIMSLREKFDAHDSLLRRAYY 113
LIV EG+DG GK+ S +A++L A + P + I L E D L+ +
Sbjct: 3 LIVIEGIDGAGKTTLSNLLAERLVELGYDAIVTHEPFTDEIKMLLENVGWKDPLVLTFLF 62
Query: 114 SLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDL 173
S I ++ D K ++MDR+++ST AY A L DLK + ++
Sbjct: 63 SADRAIHVNWLR-DAGKGIIIMDRYYYSTMAYQAALGL----DLKWLETVSSVFP----- 112
Query: 174 MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKN-AKFRELLTTIYRNMN 224
KPDLV+ + + L RLSR+++ +L+ E ++ +K RE ++ R N
Sbjct: 113 -KPDLVLLIDLPVEFALMRLSRKRD-SLDFKEKRETLSKVRENYLSLARKYN 162
>gi|325295138|ref|YP_004281652.1| thymidylate kinase [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325065586|gb|ADY73593.1| Thymidylate kinase [Desulfurobacterium thermolithotrophum DSM
11699]
Length = 206
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 93/209 (44%), Gaps = 38/209 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTV----AKKLKASLKSTPPSSIMSLREKFDAHDSLLR------ 109
I FEG++GCGKS ++ + KK K ++ + P + E + +LR
Sbjct: 2 FITFEGIEGCGKSTQAKLLYDWFLKKGKEAILTREPGGTPAAEE---IRNFILRPRKETF 58
Query: 110 RAYYSLGNYIAAQD------IKQDLQKQP-VVMDRFWHSTSAY-----GMANELVKNSDL 157
A+ L Y+AA+ IK L+K VV DRF ST AY G+ EL++
Sbjct: 59 PAFAELCLYMAARGFHVENLIKPALKKGIWVVCDRFVDSTVAYQGYGRGINVELIE---- 114
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
KL +E +KPDL + V I R+ RR +E+ E+ + + R+
Sbjct: 115 KLNEE-------ATGNLKPDLTFLIDVPVEIGFSRIKRRDLDRMEQEEMDFHERVRQGFL 167
Query: 218 TIYRNMNNPELVFVDNSEKSVHESSNDIV 246
I N E V V + K V E ++I+
Sbjct: 168 RIAE--KNSERVIVIDGTKKVDEIFDEIL 194
>gi|440494619|gb|ELQ76984.1| Thymidylate kinase/adenylate kinase [Trachipleistophora hominis]
Length = 228
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 42/236 (17%)
Query: 31 EVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTP 90
E++E +++Y +I + + + RK+ IV EG+D GKS Q + +KLK S ++
Sbjct: 14 ELQECIHVYLKICSYQ---AHMNEKRKF--IVIEGIDRSGKSTLCQGLVQKLKNSAVNSN 68
Query: 91 PSSI--------------MSLREK--FDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVV 134
P I + L+++ F+ S L +S + +++K+ LQ V+
Sbjct: 69 PVLINYPDRTTAIGKLVNLYLKKELTFNKETSHL---LFSANRWEKNEEVKRLLQDHIVI 125
Query: 135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLS 194
DR+++S AY +A +D K E D K L++PD++++L V R S
Sbjct: 126 CDRYFYSGIAYSIA----LGTDEKWAHEPD------KGLVEPDILVFLDVPPY----RTS 171
Query: 195 RRKNFTLEENELKKNAKFRE-LLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
RK+F +E+ N +E + + + + V N +K + E +++ LI
Sbjct: 172 TRKDFG---DEIYDNLDIQEKIYLQLKKCCTESKNCVVVNGQKGIDEIIDEVYGLI 224
>gi|443404664|ref|YP_007379003.1| thymidylate kinase [Halovirus HVTV-1]
gi|441462175|gb|AGC34467.1| thymidylate kinase [Halovirus HVTV-1]
Length = 195
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 89/204 (43%), Gaps = 32/204 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM------SLREKFDAHDSLLRRAYY 113
I EGLDG GK+ + + +K A P +LR + A +
Sbjct: 5 FITVEGLDGAGKTLVVKAIKRKFDAETTCEPSEFWTGKQVRKALRSETPAFTDFF--LFM 62
Query: 114 SLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKD 172
+ +Y + IK ++ Q VV DRF ST AY ++L DE ++ W D
Sbjct: 63 ADRHYHIEEFIKPKVENGQLVVSDRFSDSTLAY---------QPVQLQDELENPVEWMSD 113
Query: 173 LMK-----PDLVIYLTVSEAIRLQRLSRRKNFTLEEN--ELKKNAKFRELLTTIYRNMNN 225
+M PDL IYL VS L+R + + + E ++K+N ++ I R++++
Sbjct: 114 VMAPWKFMPDLTIYLDVSVDTALERADKEEKYEKRETLEQVKENYEY-----LINRDVDD 168
Query: 226 PELVFVDN--SEKSVHESSNDIVE 247
P VD S+K V E IVE
Sbjct: 169 PTYRVVDGEQSKKDVREEVLAIVE 192
>gi|259480991|tpe|CBF74121.1| TPA: thymidylate and uridylate kinase (Eurofung) [Aspergillus
nidulans FGSC A4]
Length = 223
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 31/206 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTV----------AKKLKASLKSTPPSSIMSLREKFDAH-DSLL 108
LIV EGLD GKS + + K ++ ++TP ++ + +H D
Sbjct: 13 LIVVEGLDRAGKSSQCKFLHNILQEGGRPVKYIRFPDRTTPIGKLIDGYLRGQSHLDDHS 72
Query: 109 RRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
+S + AQ I+ D+ V++DR+ +S + Y A N L L +
Sbjct: 73 IHLLFSANRWEVAQSIEADIANGTSVIIDRYSYSGAVYSAAK---ANPSLSLE------W 123
Query: 168 SWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFRELLTTIYRNM 223
+W + L KPDL ++L++S + ++R F E ENE + + REL TI+
Sbjct: 124 AWQPEVGLPKPDLCLFLSISP----EEAAKRGGFGGERYENEAMQT-RVRELFNTIFDLQ 178
Query: 224 NNPELVFVDNSEKSVHESSNDIVELI 249
++ +D + KS+ E S DI+ ++
Sbjct: 179 RATDIRIID-AGKSLAEVSQDILNVV 203
>gi|14161247|gb|AAK54673.1|AF251151_2 TMP kinase [Loofah witches'-broom phytoplasma]
Length = 209
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 25/212 (11%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS------LKSTPPSSIMS-LREKFDAHDSL--LRR 110
LIVFEGLDG GK+ Q + +KLK + SSI + +R F ++ + + R
Sbjct: 3 LIVFEGLDGSGKTTLIQELQQKLKKQKINNKIYQGLGSSSIGTEIRNLFLNYNQVDYITR 62
Query: 111 AYYSLGNYIAAQDIKQDL------QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD 164
Y S+ N AQ I+++L Q Q +++DR+ ST AY + L + E
Sbjct: 63 FYLSITN--MAQ-IQKELIYPHLKQNQLIILDRWLPSTYAYQLFPYLKQTKSCFDLKELF 119
Query: 165 DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM- 223
DI + K ++P L+IYL ++ I +R +KN L+ E K + + Y +
Sbjct: 120 DI-THKKLFIQPHLLIYLDINPLIGKERKQTQKNHQLDIIEQKSLTYHQTVHKGYYHYLT 178
Query: 224 ---NNPELVFVDNSEKSVHESSNDIVELIHNL 252
NN +L+ N S+ + I++LI ++
Sbjct: 179 HYQNNKQLIL--NGIDSLQSNVTKIMKLIRDI 208
>gi|45658645|ref|YP_002731.1| thymidylate kinase [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|294827736|ref|NP_710987.2| thymidylate kinase [Leptospira interrogans serovar Lai str. 56601]
gi|386073133|ref|YP_005987450.1| thymidylate kinase [Leptospira interrogans serovar Lai str. IPAV]
gi|417770445|ref|ZP_12418353.1| dTMP kinase [Leptospira interrogans serovar Pomona str. Pomona]
gi|418680142|ref|ZP_13241394.1| dTMP kinase [Leptospira interrogans serovar Pomona str. Kennewicki
LC82-25]
gi|418690682|ref|ZP_13251790.1| dTMP kinase [Leptospira interrogans str. FPW2026]
gi|418701834|ref|ZP_13262752.1| dTMP kinase [Leptospira interrogans serovar Bataviae str. L1111]
gi|418702860|ref|ZP_13263752.1| dTMP kinase [Leptospira interrogans serovar Hebdomadis str. R499]
gi|418717751|ref|ZP_13277292.1| dTMP kinase [Leptospira interrogans str. UI 08452]
gi|418725254|ref|ZP_13283930.1| dTMP kinase [Leptospira interrogans str. UI 12621]
gi|421083708|ref|ZP_15544579.1| dTMP kinase [Leptospira santarosai str. HAI1594]
gi|421102116|ref|ZP_15562726.1| dTMP kinase [Leptospira interrogans serovar Icterohaemorrhagiae
str. Verdun LP]
gi|421117905|ref|ZP_15578259.1| dTMP kinase [Leptospira interrogans serovar Canicola str. Fiocruz
LV133]
gi|421121346|ref|ZP_15581643.1| dTMP kinase [Leptospira interrogans str. Brem 329]
gi|421125661|ref|ZP_15585906.1| dTMP kinase [Leptospira interrogans serovar Grippotyphosa str.
2006006986]
gi|421133522|ref|ZP_15593670.1| dTMP kinase [Leptospira interrogans serovar Grippotyphosa str.
Andaman]
gi|59798325|sp|Q72NL9.1|KTHY_LEPIC RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|73920823|sp|Q8F7Y6.2|KTHY_LEPIN RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|45601889|gb|AAS71368.1| thymidylate kinase [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|293385579|gb|AAN48005.2| thymidylate kinase [Leptospira interrogans serovar Lai str. 56601]
gi|353456922|gb|AER01467.1| thymidylate kinase [Leptospira interrogans serovar Lai str. IPAV]
gi|400328150|gb|EJO80387.1| dTMP kinase [Leptospira interrogans serovar Pomona str. Kennewicki
LC82-25]
gi|400360182|gb|EJP16162.1| dTMP kinase [Leptospira interrogans str. FPW2026]
gi|409947586|gb|EKN97582.1| dTMP kinase [Leptospira interrogans serovar Pomona str. Pomona]
gi|409961636|gb|EKO25381.1| dTMP kinase [Leptospira interrogans str. UI 12621]
gi|410010582|gb|EKO68719.1| dTMP kinase [Leptospira interrogans serovar Canicola str. Fiocruz
LV133]
gi|410022530|gb|EKO89307.1| dTMP kinase [Leptospira interrogans serovar Grippotyphosa str.
Andaman]
gi|410345780|gb|EKO96850.1| dTMP kinase [Leptospira interrogans str. Brem 329]
gi|410368261|gb|EKP23639.1| dTMP kinase [Leptospira interrogans serovar Icterohaemorrhagiae
str. Verdun LP]
gi|410433625|gb|EKP77965.1| dTMP kinase [Leptospira santarosai str. HAI1594]
gi|410436767|gb|EKP85878.1| dTMP kinase [Leptospira interrogans serovar Grippotyphosa str.
2006006986]
gi|410758966|gb|EKR25185.1| dTMP kinase [Leptospira interrogans serovar Bataviae str. L1111]
gi|410767404|gb|EKR38079.1| dTMP kinase [Leptospira interrogans serovar Hebdomadis str. R499]
gi|410786921|gb|EKR80657.1| dTMP kinase [Leptospira interrogans str. UI 08452]
gi|455670244|gb|EMF35269.1| dTMP kinase [Leptospira interrogans serovar Pomona str. Fox 32256]
gi|456982901|gb|EMG19356.1| dTMP kinase [Leptospira interrogans serovar Copenhageni str.
LT2050]
Length = 204
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 26/158 (16%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAY 112
++K +VFEG+DG GKS +++ +KL ++ PS+ + + L + R
Sbjct: 3 NKKPIFVVFEGIDGSGKSTLCKSLTEKL---IELGIPSAAFTEPTNLETGKYLRKFLRGE 59
Query: 113 YSLGN--YIAA------QDIKQDL-----QKQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
LG I A + +KQ++ + V++DR+ +ST+AY ++L LK
Sbjct: 60 IELGKEEQIEAFLNDREESLKQNILPALNSDKNVLLDRYMYSTAAYQSGDDLSPEMILK- 118
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ ++ PDL+ YL +S +I L+RL+RRK
Sbjct: 119 -------KNLNRNFKIPDLLFYLDLSPSIALERLNRRK 149
>gi|418676213|ref|ZP_13237497.1| dTMP kinase [Leptospira kirschneri serovar Grippotyphosa str. RM52]
gi|418685833|ref|ZP_13247005.1| dTMP kinase [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|418740168|ref|ZP_13296547.1| dTMP kinase [Leptospira kirschneri serovar Valbuzzi str. 200702274]
gi|421088802|ref|ZP_15549622.1| dTMP kinase [Leptospira kirschneri str. 200802841]
gi|421129008|ref|ZP_15589218.1| dTMP kinase [Leptospira kirschneri str. 2008720114]
gi|400323359|gb|EJO71209.1| dTMP kinase [Leptospira kirschneri serovar Grippotyphosa str. RM52]
gi|410002490|gb|EKO53007.1| dTMP kinase [Leptospira kirschneri str. 200802841]
gi|410359712|gb|EKP06771.1| dTMP kinase [Leptospira kirschneri str. 2008720114]
gi|410739650|gb|EKQ84376.1| dTMP kinase [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|410752511|gb|EKR09485.1| dTMP kinase [Leptospira kirschneri serovar Valbuzzi str. 200702274]
Length = 204
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 20/155 (12%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMS---LREKFDAHDSL 107
++K +VFEG+DG GKS +++ +KL S+ T P+++ + LR+ L
Sbjct: 3 NKKPIFVVFEGIDGSGKSTLCRSLTEKLIELGIPSVTFTEPTNLETGKYLRKFLRGEIEL 62
Query: 108 LRRAYYSLGNYIAAQDIKQDL-----QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
+ + +KQ++ + V++DR+ +ST+AY ++L LK
Sbjct: 63 KKEEQIEAFLNDREESLKQNILPALNSDKNVLLDRYMYSTAAYQSGDDLSPEMILK---- 118
Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ ++ PDL+ YL +S +I L+RL+RRK
Sbjct: 119 ----KNLNRNFKIPDLLFYLDLSPSIALERLNRRK 149
>gi|417784554|ref|ZP_12432260.1| dTMP kinase [Leptospira interrogans str. C10069]
gi|409952371|gb|EKO06884.1| dTMP kinase [Leptospira interrogans str. C10069]
gi|455790436|gb|EMF42301.1| dTMP kinase [Leptospira interrogans serovar Lora str. TE 1992]
Length = 204
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 26/158 (16%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAY 112
++K +VFEG+DG GKS +++ +KL ++ PS+ + + L + R
Sbjct: 3 NKKPIFVVFEGIDGSGKSTLCKSLTEKL---IELGIPSAAFTEPTNLETGKYLRKFLRGE 59
Query: 113 YSLGN--YIAA------QDIKQDL-----QKQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
LG I A + +KQ++ + V++DR+ +ST+AY ++L LK
Sbjct: 60 IELGKEEQIEAFLNDREESLKQNILPALNSDKNVLLDRYMYSTAAYQSGDDLSPEMILK- 118
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ ++ PDL+ YL +S +I L+RL+RRK
Sbjct: 119 -------KNLNRNFKIPDLLFYLDLSPSIALERLNRRK 149
>gi|289192999|ref|YP_003458940.1| thymidylate kinase [Methanocaldococcus sp. FS406-22]
gi|288939449|gb|ADC70204.1| thymidylate kinase [Methanocaldococcus sp. FS406-22]
Length = 185
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS--LREKFDAH---DSLLRRAYYS 114
IVFEG+DG GK+ S+ +A+KL A P S + +RE + D+ ++
Sbjct: 2 FIVFEGIDGSGKTTQSKLLAEKLNAFWTYEPSDSEIGRFIREILSGNVKVDNKTLALLFA 61
Query: 115 LGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLM 174
+ IK++L+K+ VV DR+ +S+ AY + V D ++ I S + +
Sbjct: 62 ADRVEHTKLIKEELKKRAVVCDRYLYSSIAY----QSVAGVD------ENFIKSINRYAL 111
Query: 175 KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
+PD+V L V L+R+ + F ++ K K+ EL + +D +
Sbjct: 112 EPDIVFLLVVDIETALKRVKTKDIFEKKDFLEKVQNKYLEL-------AEEYNFIVIDTT 164
Query: 235 EKSVHESSNDIVELIHNLPM 254
+KSV +I+ + +L +
Sbjct: 165 KKSVKVVHEEILNYLKSLKI 184
>gi|254570737|ref|XP_002492478.1| Thymidylate and uridylate kinase [Komagataella pastoris GS115]
gi|238032276|emb|CAY70299.1| Thymidylate and uridylate kinase [Komagataella pastoris GS115]
gi|328353509|emb|CCA39907.1| dTMP kinase [Komagataella pastoris CBS 7435]
Length = 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 21/158 (13%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTP--PSSIMSLREKF--DAHDSL---LR 109
+ PLIV EGLD GKS + + +L L P + I L ++ DA + + +
Sbjct: 2 RAPLIVIEGLDRTGKSTQTAKLCHRLNGFLVKFPNRETPIGKLLNQYLTDASNPMPLEVA 61
Query: 110 RAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168
+S + ++I+ L K PVVMDR+ +S AY MA L L PD
Sbjct: 62 HLLFSANRWEMVKNIEDLLSKGTPVVMDRYVYSGVAYSMAKGLDIEWCLA-PD------- 113
Query: 169 WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL 206
K L KPD+ I+L ++ L +S+R+ F E E+
Sbjct: 114 --KGLPKPDVTIFLKAND---LDSISQREGFGEERYEV 146
>gi|150402215|ref|YP_001329509.1| thymidylate kinase [Methanococcus maripaludis C7]
gi|166221755|sp|A6VFY2.1|KTHY_METM7 RecName: Full=Probable thymidylate kinase; AltName: Full=dTMP
kinase
gi|150033245|gb|ABR65358.1| dTMP kinase [Methanococcus maripaludis C7]
Length = 199
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 102/209 (48%), Gaps = 32/209 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM--SLREKFDAHDSLLRRAYYSLGN 117
IVFEG+DGCGK+ ++ +A+KL A P + S+RE S ++ +L
Sbjct: 4 FIVFEGIDGCGKTTQAKLIAEKLNAKFTFEPTDGKIGKSIREILSG--SKCQKETLAL-- 59
Query: 118 YIAAQD-------IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
+ A D I++DL+K VV DR+ +S+ Y M+ + K D IY+
Sbjct: 60 -LFAADRVEHVSKIEEDLKKSHVVSDRYVYSSIVYQMSQGIPK----------DFIYTIN 108
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNN---PE 227
PDLV+ L V L+R+ R+ E+ E++K K +E ++ + N P+
Sbjct: 109 DYAKTPDLVVLLDVDLNEALKRMESREKEIFEKIEIQK--KIKEGYYSLINSENEKFMPK 166
Query: 228 --LVFVDNSEKSVHESSNDIV-ELIHNLP 253
+ +D + KS+ + ++I+ +I +P
Sbjct: 167 YGFIIIDTTSKSITQVFDEILNAIIDKIP 195
>gi|145242644|ref|XP_001393895.1| thymidylate kinase [Aspergillus niger CBS 513.88]
gi|134078448|emb|CAK40391.1| unnamed protein product [Aspergillus niger]
gi|350640181|gb|EHA28534.1| hypothetical protein ASPNIDRAFT_56895 [Aspergillus niger ATCC 1015]
Length = 224
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 37/209 (17%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLK---ASLK-------STPPSSIMS--LR--EKF 101
R+ LIV EGLD GKS +++ +KL+ S+K +TP ++ LR +
Sbjct: 9 RRGALIVVEGLDRAGKSSQCESLHQKLQDLGHSVKYIRFPDRTTPIGKLIDGYLRGQSQL 68
Query: 102 DAHDSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLP 160
D H L +S + A+ I++D+ V++DR+ +S + Y A N L L
Sbjct: 69 DDHSIHL---LFSANRWEIARAIEEDIAAGITVIVDRYSYSGAVYSAAK---ANPTLSLE 122
Query: 161 DEDDDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFRELL 216
++W + L +PDL ++L+++ ++R F E ENE ++ + REL
Sbjct: 123 ------WAWTPEIGLPQPDLCLFLSIAP----DEAAKRGGFGAERYENETMQS-RVRELF 171
Query: 217 TTIYRNMNNPELVFVDNSEKSVHESSNDI 245
TI+R + ++ +D + +S S DI
Sbjct: 172 QTIFRVQRSGDIRVID-AGRSFEAVSVDI 199
>gi|39938830|ref|NP_950596.1| thymidylate kinase [Onion yellows phytoplasma OY-M]
gi|39721939|dbj|BAD04429.1| thymidylate kinase [Onion yellows phytoplasma OY-M]
Length = 204
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 29/212 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA------SLKSTPPSSI-MSLREKFDAHDSL--LRR 110
LIVFEGLDG GK+ Q + K+L+ +L+ SSI LR+ F + L L R
Sbjct: 3 LIVFEGLDGSGKTTLIQKIRKQLEKQGHEVITLQGLGSSSIGQPLRDIFLTNAQLKPLTR 62
Query: 111 AYYSLGNY--IAAQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
S N I ++IK L+ +++ DR+ S AY + D++ ++
Sbjct: 63 YLLSFANMQQIQEEEIKPHLETNKIILIDRWLGSNFAYQAYPRNI--------DKNYQLF 114
Query: 168 S-WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFR------ELLTTIY 220
+ K +KPD+ +YL + + L+R +K+ L+ E + FR EL I
Sbjct: 115 NLLNKQFIKPDMTVYLKIKPQLGLERKQNQKDHKLDVIETHPLSYFRQVSQGYELFLEI- 173
Query: 221 RNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
+N+ + +L+ + + K+ + N I++ I L
Sbjct: 174 KNLGH-KLILKEMNSKTTLTNQNQIIKQIGAL 204
>gi|421100520|ref|ZP_15561143.1| dTMP kinase [Leptospira borgpetersenii str. 200901122]
gi|410796323|gb|EKR98459.1| dTMP kinase [Leptospira borgpetersenii str. 200901122]
Length = 205
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 20/148 (13%)
Query: 62 VFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMS---LREKFDAHDSLLRR---- 110
VFEG+DG GKS +++ ++L S+ T P++ + LR+ L R+
Sbjct: 10 VFEGIDGSGKSTLCKSLTERLTEQGIPSVNFTEPTNFETGKYLRKFLRGEIELGRKEQID 69
Query: 111 AYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
A+ + Q+I L+ + V++DR+ +ST+AY +L+ ++ +
Sbjct: 70 AFLNDREESLRQNILPSLESGKNVLLDRYMYSTAAYQSGEDLLPEIIIE--------KNL 121
Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
++ PDL+ YL ++ AI L+RLSRRK
Sbjct: 122 KRNFRIPDLLFYLDLNPAIALERLSRRK 149
>gi|256810617|ref|YP_003127986.1| thymidylate kinase [Methanocaldococcus fervens AG86]
gi|256793817|gb|ACV24486.1| thymidylate kinase [Methanocaldococcus fervens AG86]
Length = 186
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 28/196 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS--LREKFDAHDSLLRRAYYSLGN 117
IVFEG+DG GK+ S+ +A+K+KA P +S + +RE + + + +L
Sbjct: 2 FIVFEGIDGSGKTTQSKLLAEKIKAFWTYEPSNSDVGKFIREILSGNIKVDDK---TLAL 58
Query: 118 YIAAQDIKQDLQKQP------VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK 171
AA ++ + VV DR+ +S+ AY + ++D I S K
Sbjct: 59 LFAADRVEHTKLIKEKLKEKDVVCDRYLYSSIAYQSVAGV----------DEDFINSINK 108
Query: 172 DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFV 231
+KPD+V L V + L+R+ + F ++ +K K+ EL + +
Sbjct: 109 YALKPDIVFLLIVDIEVALKRVKTKDIFEKKDFLMKVQDKYLEL-------AEKYNFIVI 161
Query: 232 DNSEKSVHESSNDIVE 247
D + KS+ + +I+E
Sbjct: 162 DTTNKSIKDVHKEILE 177
>gi|335357631|ref|ZP_08549501.1| thymidylate kinase [Lactobacillus animalis KCTC 3501]
Length = 210
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 25/194 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS----LKSTPPSS--------IMSLREKFDAHDSL 107
I FEG DG GK+ + KLKA+ L++ P + L EKF D+
Sbjct: 5 FITFEGTDGSGKTSVLNAIEAKLKAAKIDYLRTREPGGNRISEQIRNVILDEKFTEMDAR 64
Query: 108 LRRAYYSLGNYI-AAQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLPDEDDD 165
Y+ + + L+ VV+ DRF S+ Y A + +++K
Sbjct: 65 TEALLYAAARRQHLVETVLPALEAGKVVLCDRFVDSSLVYQGAGRGIGVAEVK------Q 118
Query: 166 IYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNA-KFRELLTTIYRNM- 223
+ + ++PDL IYL + ++ L+R+ +KN E N L K A F E + Y+ +
Sbjct: 119 MNQFATAGLEPDLTIYLAIEPSLGLERI--KKNRQDEVNRLDKEALSFYETVYQAYQKLA 176
Query: 224 -NNPELVFVDNSEK 236
N +V +D S+K
Sbjct: 177 AENERIVTIDASQK 190
>gi|308472179|ref|XP_003098318.1| hypothetical protein CRE_07671 [Caenorhabditis remanei]
gi|308269166|gb|EFP13119.1| hypothetical protein CRE_07671 [Caenorhabditis remanei]
Length = 210
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 48/215 (22%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL---------------KSTPPSSIMS--LREKFD 102
LIVFEGLD GKS T AK+L SL +S+P ++ L+++ D
Sbjct: 10 LIVFEGLDRSGKS----TQAKRLVESLNKRAEGSAVLQAFPDRSSPIGKLIDQYLKKEID 65
Query: 103 AHDSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANEL----VKNSDL 157
+ L +S ++ Q I++++ K V+ DR+ +S AY +A L V++SD+
Sbjct: 66 LDEHSL-HLMFSADRFLKNQMIRENIAKGIDVICDRYCYSGVAYSLAKGLPEQWVRSSDV 124
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
LP KPD V++ VS A+ Q R F E E A ++ +
Sbjct: 125 GLP--------------KPDAVLFFDVSPAVAAQ----RGGFGAERLE---TATMQQKVA 163
Query: 218 TIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
+ + + N++ + D+ L NL
Sbjct: 164 AVMPTLRDDSFWKTVNADGDLDTVEKDVFRLYENL 198
>gi|417760140|ref|ZP_12408168.1| dTMP kinase [Leptospira interrogans str. 2002000624]
gi|417766988|ref|ZP_12414936.1| dTMP kinase [Leptospira interrogans serovar Bulgarica str. Mallika]
gi|417775685|ref|ZP_12423536.1| dTMP kinase [Leptospira interrogans str. 2002000621]
gi|418673929|ref|ZP_13235240.1| dTMP kinase [Leptospira interrogans str. 2002000623]
gi|400350557|gb|EJP02817.1| dTMP kinase [Leptospira interrogans serovar Bulgarica str. Mallika]
gi|409944099|gb|EKN89688.1| dTMP kinase [Leptospira interrogans str. 2002000624]
gi|410574559|gb|EKQ37590.1| dTMP kinase [Leptospira interrogans str. 2002000621]
gi|410579207|gb|EKQ47057.1| dTMP kinase [Leptospira interrogans str. 2002000623]
Length = 204
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 26/158 (16%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAY 112
++K +VFEG+DG GKS +++ KL ++ PS+ + + L + R
Sbjct: 3 NKKPIFVVFEGIDGSGKSTLCKSLTGKL---IELGIPSAAFTEPTNLETGKYLRKFLRGE 59
Query: 113 YSLGN--YIAA------QDIKQDL-----QKQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
LG I A + +KQ++ + V++DR+ +ST+AY ++L LK
Sbjct: 60 IELGKEEQIEAFLNDREESLKQNILPALNSDKNVLLDRYMYSTAAYQSGDDLSPEMILK- 118
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ ++ PDL+ YL +S +I L+RL+RRK
Sbjct: 119 -------KNLNRNFKIPDLLFYLDLSPSIALERLNRRK 149
>gi|418670512|ref|ZP_13231883.1| dTMP kinase [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|418710373|ref|ZP_13271144.1| dTMP kinase [Leptospira interrogans serovar Grippotyphosa str. UI
08368]
gi|418729328|ref|ZP_13287875.1| dTMP kinase [Leptospira interrogans str. UI 12758]
gi|410753894|gb|EKR15552.1| dTMP kinase [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|410769309|gb|EKR44551.1| dTMP kinase [Leptospira interrogans serovar Grippotyphosa str. UI
08368]
gi|410775506|gb|EKR55497.1| dTMP kinase [Leptospira interrogans str. UI 12758]
gi|456969973|gb|EMG10854.1| dTMP kinase [Leptospira interrogans serovar Grippotyphosa str.
LT2186]
Length = 204
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 26/158 (16%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAY 112
++K +VFEG+DG GKS +++ KL ++ PS+ + + L + R
Sbjct: 3 NKKPIFVVFEGIDGSGKSTLCKSLTGKL---IELGIPSAAFTEPTNLETGKYLRKFLRGE 59
Query: 113 YSLGN--YIAA------QDIKQDL-----QKQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
LG I A + +KQ++ + V++DR+ +ST+AY ++L LK
Sbjct: 60 IELGKEEQIEAFLNDREESLKQNILPALNSDKNVLLDRYMYSTAAYQSGDDLSPEMILK- 118
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ ++ PDL+ YL +S +I L+RL+RRK
Sbjct: 119 -------KNLNRNFKIPDLLFYLDLSPSIALERLNRRK 149
>gi|353240335|emb|CCA72209.1| related to thymidylate kinase [Piriformospora indica DSM 11827]
Length = 229
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 21/209 (10%)
Query: 60 LIVFEGLDGCGKSHTSQTV----------AKKLKASLKSTPPSSIMS--LREKFDAHDSL 107
+V EGLD GKS SQ + A+ LK ++T ++ LR + D D
Sbjct: 7 FVVIEGLDRSGKSTQSQRLFEHLQEKTGKARLLKFPDRTTAIGKMIDGYLRSESDLDDRA 66
Query: 108 LRRAYYSLGNYIAAQDIKQD-LQKQPVVMDRFWHSTSAYGMANELV-KNSDLKLPDEDDD 165
+ ++ + A I++D L +V DR+ S A+ A V K+S+ E
Sbjct: 67 I-HLLFAANRWECAASIERDLLAGTSIVCDRYAFSGIAFSAAKVAVSKSSEGNEVRESIL 125
Query: 166 IYSWPK----DLMKPDLVIYLTVS-EAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY 220
Y W K L PD+VI+L V+ E R + + + EE +L+ +FR++ +
Sbjct: 126 TYEWCKSPDTGLPAPDMVIFLDVTPEVARSRGGYGEERYEKEETQLRVKEQFRKIEQDVV 185
Query: 221 RNMNNPELVFVDNSEKSVHESSNDIVELI 249
+N E +D S KS+ E S I L+
Sbjct: 186 KNFTGIEWWNLDAS-KSLDEISESIRNLV 213
>gi|212535132|ref|XP_002147722.1| thymidylate kinase [Talaromyces marneffei ATCC 18224]
gi|210070121|gb|EEA24211.1| thymidylate kinase [Talaromyces marneffei ATCC 18224]
Length = 238
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 101/218 (46%), Gaps = 35/218 (16%)
Query: 50 SGVGDDRKYPLIVFEGLDGCGKSHTSQTV----------AKKLKASLKSTPPS----SIM 95
S + +++ L+V EGLD GKS + + AK ++ +STP S +
Sbjct: 5 SAIDKEKRGALVVVEGLDRAGKSSQCELLYKSLLGMNYKAKYIRFPDRSTPIGKQIDSYL 64
Query: 96 SLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQ-KQPVVMDRFWHSTSAYGMANELVKN 154
+ D H L +S + AQ I++D+ V++DR+ +S + Y A N
Sbjct: 65 RGESQLDDHSIHL---LFSANRWEVAQSIQKDIADGTTVIVDRYSYSGAVYSAAK---GN 118
Query: 155 SDLKLPDEDDDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK- 211
+L L ++W + L +PDL ++L++S + ++R + +E E K
Sbjct: 119 PNLSLH------WAWQPEVGLPRPDLCLFLSISP----EEAAKRGGYGVERYETDSMQKR 168
Query: 212 FRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
R+L ++ +N E+ +D + SV E + DI+E +
Sbjct: 169 VRDLFLSLLDLPHNDEICVIDAGQ-SVDEVALDILEPV 205
>gi|159906007|ref|YP_001549669.1| thymidylate kinase [Methanococcus maripaludis C6]
gi|238686994|sp|A9AAR4.1|KTHY_METM6 RecName: Full=Probable thymidylate kinase; AltName: Full=dTMP
kinase
gi|159887500|gb|ABX02437.1| dTMP kinase [Methanococcus maripaludis C6]
Length = 199
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 32/209 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM--SLREKFDAHDSLLRRAYYSLGN 117
IVFEG+DGCGK+ ++ +A++L A P + S+RE S ++ +L
Sbjct: 4 FIVFEGIDGCGKTTQAKLIAERLNAKFTFEPTDGKIGKSIREILSG--SKCQKETLAL-- 59
Query: 118 YIAAQD-------IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
+ A D I++DL+K +V DR+ +S+ Y M+ + K D IY+
Sbjct: 60 -LFAADRVEHVSKIEEDLKKSHIVSDRYVYSSIVYQMSQGIPK----------DFIYTIN 108
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNP---- 226
PDLV+ L V L+R+ R+ E+ E++K K +E ++ + N
Sbjct: 109 DYAKTPDLVVLLDVDLNEALKRMESREKEIFEKIEIQK--KIKEGYYSLINSENEKFMPT 166
Query: 227 -ELVFVDNSEKSVHESSNDIVE-LIHNLP 253
+ +D + KS+++ ++I+ +I +P
Sbjct: 167 YGFIIIDTTSKSINQVFDEILNAIIDKIP 195
>gi|302558329|ref|ZP_07310671.1| thymidylate kinase [Streptomyces griseoflavus Tu4000]
gi|302475947|gb|EFL39040.1| thymidylate kinase [Streptomyces griseoflavus Tu4000]
Length = 212
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 88/191 (46%), Gaps = 8/191 (4%)
Query: 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHD-SLLRRAYYSLGN 117
P I+ EG+ G GKS ++ + ++L+A T P M +A+ +L + A+Y G
Sbjct: 19 PFIILEGISGIGKSTLARILTQRLEAGSLHTVPDFYMPWAPVMNANTRALPQFAFYLSGV 78
Query: 118 YIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPD 177
A+ I L+ PVV DR+ S AY A +L + + + + L PD
Sbjct: 79 LHASDIICGHLEHGPVVSDRYVSSVLAYHSAVH-----ELDMAQVAELLAPFRPYLCAPD 133
Query: 178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM--NNPELVFVDNSE 235
YL ++ R++ +K++ +++++ E L + + + +P V ++ +
Sbjct: 134 HTFYLRCTDRTLRTRMAGKKDYNQDDHDMITVPGRLERLRSNFDEVAAGDPTGVIIETDD 193
Query: 236 KSVHESSNDIV 246
++ E ++ I
Sbjct: 194 RTPGELADAIT 204
>gi|421109702|ref|ZP_15570215.1| dTMP kinase [Leptospira kirschneri str. H2]
gi|410005196|gb|EKO58994.1| dTMP kinase [Leptospira kirschneri str. H2]
Length = 204
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 20/155 (12%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMS---LREKFDAHDSL 107
++K +VFEG+DG GKS +++ ++L S+ T P+++ + LR+ L
Sbjct: 3 NKKPIFVVFEGIDGSGKSTLCRSLTEELIELGIPSVTFTEPTNLETGKYLRKFLRGEIEL 62
Query: 108 LRRAYYSLGNYIAAQDIKQDL-----QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
+ + +KQ++ + V++DR+ +ST+AY ++L LK
Sbjct: 63 KKEEQIEAFLNDREESLKQNILPALNSDKNVLLDRYMYSTAAYQSGDDLSPEMILK---- 118
Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ ++ PDL+ YL +S +I L+RL+RRK
Sbjct: 119 ----KNLNRNFKIPDLLFYLDLSPSIALERLNRRK 149
>gi|150399111|ref|YP_001322878.1| thymidylate kinase [Methanococcus vannielii SB]
gi|166221757|sp|A6UP44.1|KTHY_METVS RecName: Full=Probable thymidylate kinase; AltName: Full=dTMP
kinase
gi|150011814|gb|ABR54266.1| dTMP kinase [Methanococcus vannielii SB]
Length = 198
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 22/160 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM--SLREKFDAHDSLLRRAYYSLGN 117
IVFEG+DG GK+ ++ +A+KL A P + + ++RE + +L
Sbjct: 4 FIVFEGIDGSGKTTQAKMLAEKLNAEYTCEPTTGKIGRTIREVLSGSEC----KKETLAL 59
Query: 118 YIAA------QDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK 171
AA +I++ LQK VV DR+ +S+ Y + K + IYS
Sbjct: 60 LFAADRVEHVSEIEKMLQKSHVVTDRYVYSSIIYQTMQGISK----------EFIYSINF 109
Query: 172 DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK 211
PD+V+ L V L+R+ R+ E+ E +K K
Sbjct: 110 FAKIPDIVVILDVDTEEALKRMEFREKEIFEKIEFQKKIK 149
>gi|398341265|ref|ZP_10525968.1| thymidylate kinase [Leptospira kirschneri serovar Bim str. 1051]
Length = 204
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 20/155 (12%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMS---LREKFDAHDSL 107
++K +VFEG+DG GKS +++ +KL + T P+++ + LR+ L
Sbjct: 3 NKKPIFVVFEGIDGSGKSTLCRSLTEKLIELGIPCVTFTEPTNLETGKYLRKFLRGEIEL 62
Query: 108 LRRAYYSLGNYIAAQDIKQDL-----QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
+ + +KQ++ + V++DR+ +ST+AY ++L LK
Sbjct: 63 KKEEQIEAFLNDREESLKQNILPALNSDKNVLLDRYMYSTAAYQSGDDLSPEMILK---- 118
Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ ++ PDL+ YL +S +I L+RL+RRK
Sbjct: 119 ----KNLNRNFKIPDLLFYLDLSPSIALERLNRRK 149
>gi|336121123|ref|YP_004575898.1| Thymidylate kinase [Methanothermococcus okinawensis IH1]
gi|334855644|gb|AEH06120.1| Thymidylate kinase [Methanothermococcus okinawensis IH1]
Length = 195
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 94/199 (47%), Gaps = 29/199 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS--------IMSLREKFDAHDSLLRRA 111
IVFEG+DG GK+ S+ +A+K+ P + I+S ++ +LL
Sbjct: 5 FIVFEGIDGSGKTTQSKLLAEKINGKYTCEPTNGDIGKLIRDILSGKKCEKETLALL--- 61
Query: 112 YYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK 171
++ DI+Q L+K +V DR+ +S+ Y + ++ DL I + +
Sbjct: 62 -FAADRVEHVVDIEQHLKKTHIVCDRYVYSSMVY----QAIQGIDLNF------IMNINQ 110
Query: 172 DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL--KKNAKFRELLTTIYRNMNNPELV 229
KPD++I+L V +R++ + E E+ K AK+ E+ I + + P+
Sbjct: 111 FAKKPDILIFLDVDVEESFKRMNGKNKEIFENKEMLNKVRAKYYEI---IKKRLFEPKYG 167
Query: 230 F--VDNSEKSVHESSNDIV 246
+ ++ + KS+ E ++I+
Sbjct: 168 YIKINTTGKSIEEVHDNIL 186
>gi|418694548|ref|ZP_13255585.1| dTMP kinase [Leptospira kirschneri str. H1]
gi|409957723|gb|EKO16627.1| dTMP kinase [Leptospira kirschneri str. H1]
Length = 204
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 20/155 (12%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMS---LREKFDAHDSL 107
++K +VFEG+DG GKS +++ ++L S+ T P+++ + LR+ L
Sbjct: 3 NKKPIFVVFEGIDGSGKSTLCRSLTEELIELGIPSVTFTEPTNLETGKYLRKFLRGEIEL 62
Query: 108 LRRAYYSLGNYIAAQDIKQDL-----QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
+ + +KQ++ + V++DR+ +ST+AY ++L LK
Sbjct: 63 KKEEQIEAFLNDREESLKQNILPALNSDKNVLLDRYMYSTAAYQSGDDLSPEMILK---- 118
Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ ++ PDL+ YL +S +I L+RL+RRK
Sbjct: 119 ----KNLNRNFKIPDLLFYLDLSPSIALERLNRRK 149
>gi|406964999|gb|EKD90690.1| hypothetical protein ACD_30C00109G0002 [uncultured bacterium]
Length = 192
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 11/180 (6%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS-LKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNY 118
+I EGLDG GK+ T + +A++ + T + + R FD LR YY +
Sbjct: 6 VIALEGLDGSGKTTTGRMLAEQTDNTYFYCTQDNPLKKHRAFFDTKPIQLRFLYYVALSI 65
Query: 119 IAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDL 178
+ Q ++ + V DR ST AY A L K +P P + + DL
Sbjct: 66 VNHQKVESLSNSEDVFYDRTVISTIAYHSAFGLSKPWLNLVP---------PFLINQIDL 116
Query: 179 VIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL-LTTIYRNMNNPELVFVDNSEKS 237
++Y T+ E R++RL R L + + R + YR N VFV + KS
Sbjct: 117 IVYFTLDEEERIRRLESRPQHVLTNQSQDEKSVIRSTDIDREYRKQFNESTVFVSGNGKS 176
>gi|398331025|ref|ZP_10515730.1| thymidylate kinase [Leptospira alexanderi serovar Manhao 3 str. L
60]
Length = 157
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 75/148 (50%), Gaps = 20/148 (13%)
Query: 62 VFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMS---LREKFDAHDSLLRR---- 110
VFEG+DG GKS +++ ++L +S+ T P++ + LR+ L R
Sbjct: 10 VFEGIDGSGKSTLCKSLTERLTERGISSVNFTEPTNFETGEYLRKFLRGEIELGREEQIN 69
Query: 111 AYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
A+ + Q+I L+ + V++DR+ +ST+AY +L+ S ++ +
Sbjct: 70 AFLNDREESLRQNILPSLESGRNVLLDRYMYSTAAYQSGEDLLPESIIE--------KNL 121
Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
++ PDL+ YL ++ I +RLSRRK
Sbjct: 122 NRNFRIPDLLFYLDLNPVIAFERLSRRK 149
>gi|118351574|ref|XP_001009062.1| thymidylate kinase family protein [Tetrahymena thermophila]
gi|89290829|gb|EAR88817.1| thymidylate kinase family protein [Tetrahymena thermophila SB210]
Length = 211
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 37/192 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSSI---MSLREKFDAHDSLLRRA 111
IVFEGLD CGK+ + + LK S +K P + ++ +L +A
Sbjct: 7 FIVFEGLDRCGKTSQCENLVNFLKESGKKAIMKRYPDRTTTIGQTINNYLQGKQNLSDQA 66
Query: 112 ---YYSLGNYIAAQDIKQDL-QKQPVVMDRFWHS----TSAYGMANELVKNSDLKLPDED 163
+S + ++IK+ L + +V DR+ +S TSA G E KN D
Sbjct: 67 IHLIFSANRWEQQEEIKKILDEGTNIVCDRYCYSGAVYTSAKGYDIEWCKNPD------- 119
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-NAKFRELLTTIYRN 222
K L+KPD+V+YL + + +S+R F E E ++ K RE + +
Sbjct: 120 -------KGLIKPDIVLYLHAPKEV----ISKRSGFGGEVYEKEEFQQKVREAFDNLLQK 168
Query: 223 MNNPELVFVDNS 234
+N +VF+D S
Sbjct: 169 EDN--VVFIDAS 178
>gi|456824700|gb|EMF73126.1| dTMP kinase [Leptospira interrogans serovar Canicola str. LT1962]
Length = 204
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 26/158 (16%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAY 112
++K +VFEG+DG GKS +++ +KL ++ PS+ + + L + R
Sbjct: 3 NKKPIFVVFEGIDGSGKSTLCKSLTEKL---IELGIPSAAFTEPTNLETGKYLRKFLRGE 59
Query: 113 YSLGN--YIAA------QDIKQDL-----QKQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
LG I A + +KQ++ + ++DR+ +ST+AY ++L LK
Sbjct: 60 IELGKEEQIEAFLNDREESLKQNILPALNSDKNALLDRYMYSTAAYQSGDDLSPEMILK- 118
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ ++ PDL+ YL +S +I L+RL+RRK
Sbjct: 119 -------KNLNRNFKIPDLLFYLDLSPSIALERLNRRK 149
>gi|406604939|emb|CCH43612.1| hypothetical protein BN7_3165 [Wickerhamomyces ciferrii]
Length = 181
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 42/197 (21%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYI 119
LI+ EGLD GK+ ++ + ++LK K KF AH +S +
Sbjct: 6 LILIEGLDRAGKTTQTERLVERLKKEGKDVELI-------KFPAH------LLFSANRWE 52
Query: 120 AAQDIKQDL-QKQPVVMDRFWHSTSAY----GMANELVKNSDLKLPDEDDDIYSWPKDLM 174
A IK L Q + +V+DR+ +S AY G+ ++ N D+ LP
Sbjct: 53 LANVIKDKLTQGKYIVLDRYVYSGVAYTAAKGLDHQWCLNPDIGLP-------------- 98
Query: 175 KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-NAKFRELLTTIYRNMNNPELVFVDN 233
KPDL ++L ++++ S R+ F E E+K+ K R+ Y N +N + VD
Sbjct: 99 KPDLTLFLKLNDS------SNREGFGDERYEVKEFQLKVRQQFEKFY-NESNWNTIIVDG 151
Query: 234 SEKSVHESSNDIVELIH 250
K++ + N+I L+
Sbjct: 152 --KNIEQVENEIWNLLE 166
>gi|272761235|gb|ACZ95829.1| thymidylate kinase [Jujube witches'-broom phytoplasma]
Length = 217
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA------SLKSTPPSSI-MSLREKFDAHDSL--LRR 110
LIVFEGLDG GK+ Q + K+L+ +L+ SSI LR+ F + L L R
Sbjct: 6 LIVFEGLDGSGKTTLIQKIRKQLEKQGQEVITLQGLGSSSIGQPLRDIFLTNAQLKPLTR 65
Query: 111 AYYSLGNY--IAAQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
S N I ++IK L+ +++ DR+ S AY + D++ ++
Sbjct: 66 YLLSFANMQQIQEEEIKPHLETNKIILIDRWLGSNFAYQAYPRNI--------DKNYQLF 117
Query: 168 S-WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE------LKKNAKFRELLTTIY 220
+ K +KPD+ +YL + + L+R +K+ L+ E L++ ++ EL I
Sbjct: 118 NLLNKQFIKPDMTVYLKIKPQLGLERKQNQKDHKLDVIETHPLSYLRQVSQGYELFLEI- 176
Query: 221 RNMNNPELVFVDNSEKSVHESSNDIVELI 249
+N+ + +L+ + + K+ + N I++ I
Sbjct: 177 KNLGH-KLILKEINSKTTLTNQNQIIKQI 204
>gi|121718363|ref|XP_001276187.1| thymidylate kinase [Aspergillus clavatus NRRL 1]
gi|119404385|gb|EAW14761.1| thymidylate kinase [Aspergillus clavatus NRRL 1]
Length = 221
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 102/210 (48%), Gaps = 31/210 (14%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMSLREKFDAH- 104
++ LIV EGLD GKS + + L+AS ++TP +++ + +H
Sbjct: 6 KRGALIVVEGLDRAGKSSQCERLRDSLQASGYSVKYIRFPDRTTPIGQLINGYLQGQSHL 65
Query: 105 DSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
D +S + A+ I+ D+ V++DR+ +S + Y A N +L L
Sbjct: 66 DDHSIHLLFSANRWEIARTIENDIANGVTVIVDRYSYSGAVYSAAK---GNQNLSLE--- 119
Query: 164 DDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFRELLTTI 219
++W + L +PD+ ++L +S + ++R F +E ENE K ++ REL T+
Sbjct: 120 ---WAWQPEIGLPQPDICLFLRISP----EEAAKRGGFGIERYENE-KMQSRVRELFQTL 171
Query: 220 YRNMNNPELVFVDNSEKSVHESSNDIVELI 249
++ + + + + ++ +++ S DI++ +
Sbjct: 172 FK-LQLGDYIHMVDAGRTLDAVSQDILQTV 200
>gi|337286432|ref|YP_004625905.1| thymidylate kinase [Thermodesulfatator indicus DSM 15286]
gi|335359260|gb|AEH44941.1| thymidylate kinase [Thermodesulfatator indicus DSM 15286]
Length = 380
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 103/227 (45%), Gaps = 40/227 (17%)
Query: 20 ILKSAQYSSLPEVEELLN----IYSRIN-ETND---QDSGVGDDRKYPLIVFEGLDGCGK 71
+L + Y +P VEEL I++ + E+ D V R LI EGLDG GK
Sbjct: 131 VLATVGYGLIPFVEELFKREDAIFAEVTPESRDYLVDRIAVEFYRPGFLIAIEGLDGSGK 190
Query: 72 SHTSQTVAKKL-----KASLKSTPPSSIMS--LREKFDAHDSLLRRAYYSLGNYIAAQDI 124
S + +A+KL K + P S +RE A + +A L +D
Sbjct: 191 STFIKGLAQKLEEKGEKVCVTREPTSGEWGQKIREHLAAGSKISPQAMAEL----FLRDR 246
Query: 125 KQDLQ---------KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK 175
++ Q Q ++ DR++ ST AY A EL D+K + ++ ++
Sbjct: 247 REHAQNFLIPKLQDGQIILCDRYYLSTMAYQGACEL----DIKEIKKANETWA-----PV 297
Query: 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRN 222
PDL++YL VS L+R+++RK + + E+ + +F + +IY N
Sbjct: 298 PDLILYLKVSVEEALKRVNQRKFY---KPEVFETQEFLTKVASIYEN 341
>gi|359143703|ref|ZP_09177958.1| hypothetical protein StrS4_00747 [Streptomyces sp. S4]
Length = 211
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 89/201 (44%), Gaps = 16/201 (7%)
Query: 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYY 113
+D P IV EG+ G GK+ + + +L A+ T P+ +A L + +
Sbjct: 13 NDGNGPFIVLEGVSGIGKTTLAAVLRDRLSATTLHTLPAPHNGWSVTVNAVLCPLPQFAF 72
Query: 114 SLGNYIAAQD-IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED--DDIYSWP 170
L + A D I+Q PV+ DR+ S +A A ++P E + + +
Sbjct: 73 YLSGLLHASDLIRQARTLGPVIADRYVSSVTACHAAVH-------QVPIEAVVERLLPFR 125
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKKNAKFRELLTTIYR-NMNNPEL 228
+ L+KP YLT +E +RL+ +++ +++E L + LL R +
Sbjct: 126 EYLVKPTRTFYLTCTEQRLRERLTTKQDIKTDDHELLSVPGRLTSLLANFERVAAQDTSA 185
Query: 229 VFVDNSEKSVHESSNDIVELI 249
V +D SE + D+V++I
Sbjct: 186 VCLDTSEA----TPEDLVDII 202
>gi|67902452|ref|XP_681482.1| hypothetical protein AN8213.2 [Aspergillus nidulans FGSC A4]
gi|40739679|gb|EAA58869.1| hypothetical protein AN8213.2 [Aspergillus nidulans FGSC A4]
Length = 227
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 39/215 (18%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKST-----PPSS--IMSLREKFDAHDSLLR 109
+ LIV EGLD GKS + + L+ + P S +LR K D LR
Sbjct: 10 RGALIVVEGLDRAGKSSQCKFLHNILQEGGRPVKYIRFPGDSSFARTLRRKL--IDGYLR 67
Query: 110 ----------RAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLK 158
+S + AQ I+ D+ V++DR+ +S + Y A N L
Sbjct: 68 GQSHLDDHSIHLLFSANRWEVAQSIEADIANGTSVIIDRYSYSGAVYSAAK---ANPSLS 124
Query: 159 LPDEDDDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFRE 214
L ++W + L KPDL ++L++S + ++R F E ENE + + RE
Sbjct: 125 LE------WAWQPEVGLPKPDLCLFLSISP----EEAAKRGGFGGERYENEAMQT-RVRE 173
Query: 215 LLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
L TI+ ++ +D + KS+ E S DI+ ++
Sbjct: 174 LFNTIFDLQRATDIRIID-AGKSLAEVSQDILNVV 207
>gi|348176514|ref|ZP_08883408.1| thymidylate kinase [Saccharopolyspora spinosa NRRL 18395]
Length = 215
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 37/188 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSL----LRRAYYSL 115
LIV EGLDG GK + +A +L A +S S+ R D H L LR + L
Sbjct: 4 LIVIEGLDGAGKRTLANGIAAELTARGRSVARSAFP--RYADDVHAELFAEALRGRHGDL 61
Query: 116 GNYI-------------AAQDIKQDLQKQPVV-MDRFWHSTSAYGMANELVKNSDLKLPD 161
G+ + AA ++ DL+ VV +DR+ S +AYG A D
Sbjct: 62 GDSVHGMAILNALDRRAAADSLRADLRAHDVVLLDRYVASNAAYGAAR--------LHQD 113
Query: 162 EDDDIYSWPKDLM-------KPDLVIYLTVSEAIRLQRLSRRKNFTL--EENELKKNAKF 212
D +W +L KPDL I L V + R R+ + + + + +A
Sbjct: 114 GHGDFVAWVHELEVTRFALPKPDLQILLQVPSEVAAARAEHRERTEVDRQRDAFESDASL 173
Query: 213 RELLTTIY 220
++ +Y
Sbjct: 174 QQRCGKVY 181
>gi|359727501|ref|ZP_09266197.1| thymidylate kinase [Leptospira weilii str. 2006001855]
gi|417779186|ref|ZP_12426978.1| dTMP kinase [Leptospira weilii str. 2006001853]
gi|410780521|gb|EKR65108.1| dTMP kinase [Leptospira weilii str. 2006001853]
Length = 205
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 76/148 (51%), Gaps = 20/148 (13%)
Query: 62 VFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMS---LREKFDAHDSLLRR---- 110
VFEG+DG GKS +++ ++L S+ T P++ + LR+ L R
Sbjct: 10 VFEGIDGSGKSTLCKSLTERLTEHGIPSVNFTEPTNFETGKYLRKFLRGEIELGREEQIN 69
Query: 111 AYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
A+ + Q+I L+ + V++DR+ +ST+AY ++L+ S ++ +
Sbjct: 70 AFLNDREESLRQNILPSLESGRNVLLDRYMYSTAAYQSDDDLLPESIIE--------KNL 121
Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
++ PDL+ YL ++ I L+RL+RRK
Sbjct: 122 NRNFRIPDLLFYLDLNPVIALERLNRRK 149
>gi|410451682|ref|ZP_11305684.1| dTMP kinase [Leptospira sp. Fiocruz LV3954]
gi|410014448|gb|EKO76578.1| dTMP kinase [Leptospira sp. Fiocruz LV3954]
Length = 202
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 75/148 (50%), Gaps = 20/148 (13%)
Query: 62 VFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMS---LREKFDAHDSLLRR---- 110
VFEG+DG GKS +++ +L S+ T P++ + LR+ L R
Sbjct: 10 VFEGIDGSGKSTLCKSLTDRLNERGIPSVNFTEPTNFETGKYLRKFLKGEIDLGREEQID 69
Query: 111 AYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
A+ + Q+I L+ + V++DR+ +ST+AY ++ + + ++ +
Sbjct: 70 AFLNDREESLIQNILPSLKSSKNVLLDRYMYSTAAYQSGDDFLPETIIE--------KNL 121
Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
++ PDL+ YL ++ AI L+RL+RRK
Sbjct: 122 ERNFKIPDLLFYLDLNPAIALERLNRRK 149
>gi|456877722|gb|EMF92731.1| dTMP kinase [Leptospira santarosai str. ST188]
Length = 202
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 75/148 (50%), Gaps = 20/148 (13%)
Query: 62 VFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMS---LREKFDAHDSLLRR---- 110
VFEG+DG GKS +++ +L S+ T P++ + LR+ L R
Sbjct: 10 VFEGIDGSGKSTLCKSLTDRLNERGIPSVNFTEPTNFETGKYLRKFLKGEIDLEREEQID 69
Query: 111 AYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
A+ + Q+I L+ + V++DR+ +ST+AY ++ + + ++ +
Sbjct: 70 AFLNDREESLIQNILPSLKSGKNVLLDRYMYSTAAYQSGDDFLPETIIE--------KNL 121
Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
++ PDL+ YL ++ AI L+RL+RRK
Sbjct: 122 ERNFKIPDLLFYLDLNPAIALERLNRRK 149
>gi|297619540|ref|YP_003707645.1| thymidylate kinase [Methanococcus voltae A3]
gi|297378517|gb|ADI36672.1| thymidylate kinase [Methanococcus voltae A3]
Length = 223
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 42/212 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL---G 116
IVFEG+DG GKS ++ +A ++ A L P +S + + + + +L G
Sbjct: 28 FIVFEGIDGSGKSTQAKMLADRINAILDYEPTNSEVGKLIRKGLSEGCFEKETLALLFAG 87
Query: 117 NYIA-AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK 175
+ + +++ + L+K +V DR+ +S+ Y + + D++ IY+ +
Sbjct: 88 DRVEHCKELAKKLEKNHIVCDRYVYSSIVY----QNTQGIDIEY------IYNINRYARV 137
Query: 176 PDLVIYL------------------TVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
PD+V+ L + E I Q++ R K + E+E KN K
Sbjct: 138 PDIVVLLDLNPELSMLRVNDRTGNNEIFEKIEFQKIIREKYLQIFEDEKNKNKK------ 191
Query: 218 TIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
+M P + ++ KS+ E N+I +LI
Sbjct: 192 ----SMFKPPIYIKIDANKSILELHNEIYDLI 219
>gi|421110526|ref|ZP_15571021.1| dTMP kinase [Leptospira santarosai str. JET]
gi|410804122|gb|EKS10245.1| dTMP kinase [Leptospira santarosai str. JET]
Length = 202
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 75/148 (50%), Gaps = 20/148 (13%)
Query: 62 VFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMS---LREKFDAHDSLLRR---- 110
VFEG+DG GKS +++ +L S+ T P++ + LR+ L R
Sbjct: 10 VFEGIDGSGKSTLCKSLTDRLNERGIPSVNFTEPTNFETGKYLRKFLKGEIDLGREEQID 69
Query: 111 AYYSLGNYIAAQDIKQDLQ-KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
A+ + Q+I L+ + V++DR+ +ST+AY ++ + + ++ +
Sbjct: 70 AFLNDREESLIQNILPSLKSGKNVLLDRYMYSTAAYQSGDDFLPETIIE--------KNL 121
Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
++ PDL+ YL ++ AI L+RL+RRK
Sbjct: 122 ERNFKIPDLLFYLDLNPAIALERLNRRK 149
>gi|359683848|ref|ZP_09253849.1| thymidylate kinase [Leptospira santarosai str. 2000030832]
gi|418744898|ref|ZP_13301243.1| dTMP kinase [Leptospira santarosai str. CBC379]
gi|418755380|ref|ZP_13311587.1| dTMP kinase [Leptospira santarosai str. MOR084]
gi|409964391|gb|EKO32281.1| dTMP kinase [Leptospira santarosai str. MOR084]
gi|410794229|gb|EKR92139.1| dTMP kinase [Leptospira santarosai str. CBC379]
Length = 202
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 75/148 (50%), Gaps = 20/148 (13%)
Query: 62 VFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMS---LREKFDAHDSLLRR---- 110
VFEG+DG GKS +++ +L S+ T P++ + LR+ L R
Sbjct: 10 VFEGIDGSGKSTLCKSLTDRLNERGIPSVNFTEPTNFETGKYLRKFLKGEIDLGREEQID 69
Query: 111 AYYSLGNYIAAQDIKQDLQ-KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
A+ + Q+I L+ + V++DR+ +ST+AY ++ + + ++ +
Sbjct: 70 AFLNDREKSLIQNILPSLKSGKNVLLDRYMYSTAAYQSGDDFLPETIIE--------KNL 121
Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
++ PDL+ YL ++ AI L+RL+RRK
Sbjct: 122 ERNFKIPDLLFYLDLNPAIALERLNRRK 149
>gi|422004655|ref|ZP_16351870.1| thymidylate kinase [Leptospira santarosai serovar Shermani str. LT
821]
gi|417256709|gb|EKT86125.1| thymidylate kinase [Leptospira santarosai serovar Shermani str. LT
821]
Length = 202
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 75/148 (50%), Gaps = 20/148 (13%)
Query: 62 VFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMS---LREKFDAHDSLLRR---- 110
VFEG+DG GKS +++ +L S+ T P++ + LR+ L R
Sbjct: 10 VFEGIDGSGKSTLCKSLTDRLNERGIPSVNFTEPTNFETGKYLRKFLKGEIDLGREEQID 69
Query: 111 AYYSLGNYIAAQDIKQDLQ-KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
A+ + Q+I L+ + V++DR+ +ST+AY ++ + + ++ +
Sbjct: 70 AFLNDREESFIQNILPSLKSGKNVLLDRYMYSTAAYQSGDDFLPETIIE--------KNL 121
Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
++ PDL+ YL ++ AI L+RL+RRK
Sbjct: 122 ERNFKIPDLLFYLDLNPAIALERLNRRK 149
>gi|291221635|ref|XP_002730837.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 211
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 34/219 (15%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQT-----VAKKLKASLKSTPPSS------IMSLREKFDAH 104
R+ LIV EG D CGKS ++ VA A L P S I S EK
Sbjct: 6 RRGALIVLEGCDRCGKSTQARKLVDTLVAGGTPAELWRFPERSSSIGQLIGSYLEKKSEV 65
Query: 105 DSLLRRAYYSLGNYIAAQDIKQDLQ-KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
+ +S + + +++ LQ VV+DR+ +S A+ A E K PD
Sbjct: 66 EDHAIHLLFSANRWESVPRMRKLLQDGTTVVVDRYAYSGVAFTAAKEGFDIEWCKQPD-- 123
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM 223
+ L +PDLV+YLT+ + ++R +F E E F++ + +Y +
Sbjct: 124 -------RGLPEPDLVLYLTIGA----EDAAKRADFGGERYE---QTDFQKRVADMYGLL 169
Query: 224 NNPELVFVDNSE--KSVHES----SNDIVELIHNLPMFK 256
+D S+ K +H+ + DI+ + N P+ K
Sbjct: 170 REDRWETLDASQSIKDLHDQIAKLTRDIITRVENKPINK 208
>gi|37680376|ref|NP_934985.1| thymidylate kinase [Vibrio vulnificus YJ016]
gi|37199123|dbj|BAC94956.1| thymidylate kinase [Vibrio vulnificus YJ016]
Length = 206
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 92/203 (45%), Gaps = 17/203 (8%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDS----LLRRAYYSL 115
IV+EGLD CGK+ S A++ LRE D++ S LL ++ L
Sbjct: 4 FIVYEGLDACGKTTLSSRYAQERNTRSHFAIVQEGEQLRELIDSNQSKESALL---FFML 60
Query: 116 GNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK 175
N++ + ++ Q + V++DR+ ST AY L+ +K+ E D+ +++
Sbjct: 61 NNFLKSYEVAQARESGDVILDRYIFSTLAYQTI--LIGEERVKVIFEALDV---KNNILL 115
Query: 176 PDLVIYLTVSEAIRLQRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
PD ++++ R+ +R + + +N TI++ + P ++ +D S
Sbjct: 116 PDAIVFVKADAKTINNRIKARGGKAQWYGDAVTQNHNVEAAYKTIFKWFDIP-IIEIDTS 174
Query: 235 EK---SVHESSNDIVELIHNLPM 254
EK +V E+ +V I L +
Sbjct: 175 EKLGLTVEETYQRMVGKIDALSV 197
>gi|378727720|gb|EHY54179.1| thymidylate kinase [Exophiala dermatitidis NIH/UT8656]
Length = 226
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 35/210 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTV----------AKKLKASLKSTPPS----SIMSLREKFDAHD 105
L+V EGLD GKS Q + A+ +K ++TP S ++ + + D H
Sbjct: 13 LVVIEGLDRSGKSSQCQQLFDSLQSQGKRARYVKFPDRTTPTGQMINSYLTGQVQQDDHS 72
Query: 106 SLLRRAYYSLGNYIAAQDIKQD-LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD 164
L +S + A + I D L V++DR+ S + Y A E N DL L
Sbjct: 73 IHL---LFSANRWEAIRSIHNDLLAGVTVIVDRYSFSGAVYSAAKE---NPDLTLD---- 122
Query: 165 DIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-NAKFRELLTTIYR 221
++W + L+KPD++ +L +S A ++R+ + E E +K A+ R L ++
Sbjct: 123 --WAWNPEIGLLKPDVLFFLDISAA----DAAKRRGYGAERYETEKMQARVRTLFQELFA 176
Query: 222 NMNNPELVFVDNSEKSVHESSNDIVELIHN 251
+ N + + N+ + + ++DI I +
Sbjct: 177 RLENVPVRII-NAGQPLKAVADDIAAGIAD 205
>gi|15920677|ref|NP_376346.1| thymidylate kinase [Sulfolobus tokodaii str. 7]
gi|23821799|sp|Q975E6.1|KTHY1_SULTO RecName: Full=Probable thymidylate kinase; AltName: Full=dTMP
kinase
gi|342306202|dbj|BAK54291.1| probable thymidylate kinase [Sulfolobus tokodaii str. 7]
Length = 190
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 33/159 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPS-SIMSLREKFDAHDSLLRRAYY 113
I FEG+DG GK+ ++ V + LK L P + I L +K +D +L +
Sbjct: 4 FISFEGIDGAGKTTLAKKVYEVLKKKGYNVILTQEPFTREITELIKKAGWNDPVLLTLLF 63
Query: 114 SLGNYIAAQDIKQDLQKQP--VVMDRFWHSTSAY----GMANELVKNSDLKLPDEDDDIY 167
S A IK ++++P V+MDR++HST AY G+ + ++ + K P
Sbjct: 64 SADR---AFHIKWIMEQKPEIVLMDRYFHSTIAYQSVLGLDEKWIEEVNSKFP------- 113
Query: 168 SWPKDLMKPDLVIYL--TVSEAIRLQRLSRRKNFTLEEN 204
KPD+V L V+EAI+ R+ + F EE
Sbjct: 114 -------KPDIVFLLDIKVNEAIK--RIRKDDQFNFEEK 143
>gi|255955699|ref|XP_002568602.1| Pc21g15930 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590313|emb|CAP96490.1| Pc21g15930 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 223
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 95/212 (44%), Gaps = 31/212 (14%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQT----------VAKKLKASLKSTPPSSIMSLREKFDAH- 104
R+ LIV EGLD GKS + V K ++ ++TP ++ + +H
Sbjct: 10 RRGALIVVEGLDRAGKSSQCEMLRDSLSRQGHVVKYIRFPDRTTPIGKLIDSYLRGSSHQ 69
Query: 105 DSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
D +S + A+ I++D+ V++DR+ +S Y A N L L
Sbjct: 70 DDHSIHLLFSANRWEIAKSIEEDIANGTTVIVDRYSYSGVVYSAAK---ANPTLSLE--- 123
Query: 164 DDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKKNAKFRELLTTIY 220
++W + L +PD+ ++L++S + ++R F E E + + REL TI+
Sbjct: 124 ---WAWRPEIGLPRPDICLFLSISP----EEAAKRGGFGAERYENGEMQTRVRELFQTIF 176
Query: 221 RNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
+ ++ ++ KS+ E S +I ++ +
Sbjct: 177 EKQQDVSII---DAGKSIEEVSQEIRGVVADC 205
>gi|45358597|ref|NP_988154.1| thymidylate kinase [Methanococcus maripaludis S2]
gi|59798295|sp|Q6LYF7.1|KTHY_METMP RecName: Full=Probable thymidylate kinase; AltName: Full=dTMP
kinase
gi|44921355|emb|CAF30590.1| Thymidylate kinase [Methanococcus maripaludis S2]
Length = 199
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM--SLREKFDAHDSLLRRAYYSLGN 117
IVFEG+DGCGK+ ++ VA+KL A+ P + S+RE S + +L
Sbjct: 4 FIVFEGIDGCGKTTQAKLVAEKLNANFTFEPTDGKIGKSIREILAG--SKCNKETLAL-- 59
Query: 118 YIAAQD-------IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
+ A D I++DL+ VV DR+ +S+ Y M + K+ K+ D
Sbjct: 60 -LFAADRVEHVSKIEEDLKNAHVVSDRYVYSSIVYQMTQGIPKDFIYKIND 109
>gi|131840166|ref|YP_001096175.1| unnamed protein product [Cyprinid herpesvirus 3]
gi|71068047|gb|AAZ23013.1| thymidylate kinase [Cyprinid herpesvirus 3]
gi|84181500|gb|ABC55103.1| hypothetical protein [Cyprinid herpesvirus 3]
gi|109706741|gb|ABG42967.1| thymidylate kinase [Cyprinid herpesvirus 3]
gi|129560659|dbj|BAF48954.1| deoxythymidylate kinase [Cyprinid herpesvirus 3]
Length = 233
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 93/213 (43%), Gaps = 42/213 (19%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKL-----KASL-----KSTPPSSIMS--LREKFDA 103
R+ LI+ EG+D GKS + + K L +A L ++TP +++ L K D
Sbjct: 19 RRGALIILEGVDRSGKSTQCRMLVKALLEMGVEAELMRFPDRTTPIGQMINSYLLNKSDL 78
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAY-----GMANELVKNSDL 157
D ++ +S + AA D+K+ L K +V+DR+ S A+ G E K +D+
Sbjct: 79 DDHVV-HLLFSANRWEAASDLKRKLMKGTTIVLDRYAFSGVAFTAAKPGFELEWCKRTDV 137
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-NAKFRELL 216
LP KPDLV++L AI + R F E E+ A RE
Sbjct: 138 GLP--------------KPDLVVFL----AIEASAVESRGGFGDERYEVSAFQAAVRENF 179
Query: 217 TTIYRNMN-NPELVFVDNSEKSVHESSNDIVEL 248
+ +++ N V + + VH DI+ L
Sbjct: 180 EVLMKDVTVNWRKVDAARTPEQVH---GDILRL 209
>gi|225620556|ref|YP_002721813.1| thymidylate kinase [Brachyspira hyodysenteriae WA1]
gi|254808280|sp|C0R1X1.1|KTHY_BRAHW RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|225215375|gb|ACN84109.1| thymidylate kinase [Brachyspira hyodysenteriae WA1]
Length = 203
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 34/195 (17%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYS-- 114
K LIV EG+DG GKS ++ L L + SI + + S LR + S
Sbjct: 2 KGKLIVLEGIDGSGKS----SIGMMLTDILNNIGIKSIYTFEPTHAYYGSKLRESMLSKD 57
Query: 115 ------LGNYIA--AQDIKQDLQKQ-----PVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
L +IA + IK ++ +V+DR+ HS+ AY A + K
Sbjct: 58 LTPEEELSLFIADRKEHIKHMIRPAINDGYVIVLDRYMHSSIAYQGAKGIDKEY------ 111
Query: 162 EDDDIYSWPKD-LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY 220
IY+ KD +++PDLV L ++ L R+ ++ F + +N + E + I+
Sbjct: 112 ----IYNLHKDFILEPDLVFILHLNIETALNRIMEKRGFV----DRFENKHYLEEVDKIF 163
Query: 221 RNMNNPELVFVDNSE 235
+ N P + +D S+
Sbjct: 164 SSFNEPYMHHIDASK 178
>gi|295666950|ref|XP_002794025.1| thymidylate kinase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226277678|gb|EEH33244.1| thymidylate kinase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 232
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 101/209 (48%), Gaps = 31/209 (14%)
Query: 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLK-----ASLKSTP--PSSIMSLREKFDAHDS 106
+ ++ LIV EGLD GKS + K L+ + P ++I L + DS
Sbjct: 9 EGQRGALIVVEGLDRAGKSTQCALLQKTLQQEGHEVKYRRFPNRTTAIGKLINAYLVGDS 68
Query: 107 LLR----RAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
L +S + AA++I++D+ +++DR+ +S + Y A + +P
Sbjct: 69 HLDDHSIHLLFSANRWEAAKEIRKDISNGISIIIDRYSYSGAVYSAAKD--------VPG 120
Query: 162 EDDDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFRELLT 217
D ++W + L +PD+ ++L +S + +RR + LE EN++ + A+ R+L
Sbjct: 121 LSLD-WAWQPEIGLPQPDIWLFLNISP----EEAARRGGYGLERYENDILQ-ARVRQLFQ 174
Query: 218 TIYRNMNNPELVFVDNSEKSVHESSNDIV 246
T + +PE V V N+ +S + + DI+
Sbjct: 175 T-FIEREDPENVCVINAGRSEVDVAQDIL 202
>gi|456863485|gb|EMF81952.1| dTMP kinase [Leptospira weilii serovar Topaz str. LT2116]
Length = 205
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 20/148 (13%)
Query: 62 VFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMS---LREKFDAHDSLLRR---- 110
VFEG+DG GKS +++ ++L S+ T P+ + + LR+ L R
Sbjct: 10 VFEGIDGSGKSTLCKSLTERLTEHGIPSVNFTEPTKLETGKYLRKFLRGEIELGREEQIN 69
Query: 111 AYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
A+ + Q+I L+ + V++DR+ +ST+AY ++L LK +
Sbjct: 70 AFLNDREESLRQNILPSLESGRNVLLDRYMYSTAAYQSDDDLSPEMILK--------KNL 121
Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
++ PDL+ YL ++ I L+RL+RRK
Sbjct: 122 NRNFKIPDLLFYLDLNPVIALERLNRRK 149
>gi|340624356|ref|YP_004742809.1| thymidylate kinase [Methanococcus maripaludis X1]
gi|339904624|gb|AEK20066.1| thymidylate kinase [Methanococcus maripaludis X1]
Length = 199
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM--SLREKFDAHDSLLRRAYYSLGN 117
IVFEG+DGCGK+ ++ +A+KL A+ P + S+RE S + +L
Sbjct: 4 FIVFEGIDGCGKTTQAKLIAEKLNANFTFEPTDGKIGKSIREILAG--SKCNKETLAL-- 59
Query: 118 YIAAQD-------IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
+ A D I++DL+ VV DR+ +S+ Y M + K+ K+ D
Sbjct: 60 -LFAADRVEHVSKIEEDLKNAHVVSDRYVYSSIVYQMTQGIPKDFIYKIND 109
>gi|268529284|ref|XP_002629768.1| Hypothetical protein CBG01006 [Caenorhabditis briggsae]
Length = 213
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 38/167 (22%)
Query: 43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTP----PSS 93
E NDQ+ + LIVFEGLD GKS +Q + +K+ A L++ P P
Sbjct: 3 TEQNDQEE------RGALIVFEGLDRSGKSTQAQRLVEKIINSGRMAVLQAFPDRQSPVG 56
Query: 94 IM---SLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMAN 149
M LR + D + L +S ++ + IKQ + Q VV DR+ +S +Y +A
Sbjct: 57 EMIDRYLRGEIDMDEHAL-HLLFSADRFLKKKMIKQHIAQGVDVVCDRYCYSGVSYSLAK 115
Query: 150 EL----VKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQR 192
L V+ +D LP KPD+V++ VS + R
Sbjct: 116 GLPEDWVRVTDQGLP--------------KPDIVLFFQVSPEVAASR 148
>gi|17535647|ref|NP_496151.1| Protein R53.2 [Caenorhabditis elegans]
gi|3024082|sp|Q22018.1|KTHY_CAEEL RecName: Full=Probable thymidylate kinase; AltName: Full=dTMP
kinase
gi|3879168|emb|CAA91347.1| Protein R53.2 [Caenorhabditis elegans]
Length = 218
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 49/169 (28%)
Query: 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL---------KSTPPSSIMS-------- 96
D ++ LIVFEGLD GKS T AK+L S+ S+ PS+++
Sbjct: 4 DQKRGLLIVFEGLDRSGKS----TQAKRLVESINKKSTESGDASSSPSAVLQAFPDRSSS 59
Query: 97 --------LREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGM 147
LR++ D + L +S + Q I+ ++ K V+ DR+ +S AY +
Sbjct: 60 IGKLIDQYLRKEIDMDEHAL-HLLFSADRFSKNQMIRDNIAKGIDVICDRYCYSGVAYSL 118
Query: 148 ANEL----VKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQR 192
A L V++SD+ LP KPD V++ VS + QR
Sbjct: 119 AKGLPEQWVRSSDVGLP--------------KPDAVLFFDVSPEVAAQR 153
>gi|67477898|ref|XP_654383.1| Thymidylate kinase [Entamoeba histolytica HM-1:IMSS]
gi|56471425|gb|EAL48995.1| Thymidylate kinase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449710743|gb|EMD49762.1| thymidylate kinase, putative [Entamoeba histolytica KU27]
Length = 210
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 29/141 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVA----KKLKASLKSTPP---SSIMSLREKFDAHDSLLRRAY 112
LIV EG+D GKS +Q V KK S+K P + I L ++F +L ++
Sbjct: 8 LIVLEGIDQSGKSSATQRVCELLEKKGIQSVKQPFPDRSTDIGKLIDEFLHGKNLPQQVV 67
Query: 113 ---YSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANEL----VKNSDLKLPDEDD 164
YS + AQ+IK+ L+K V+ DR+ S Y +AN L ++D LP
Sbjct: 68 HLLYSANRWEVAQNIKETLEKGITVICDRYAFSGIVYSIANGLDEKWCNSADCGLP---- 123
Query: 165 DIYSWPKDLMKPDLVIYLTVS 185
KPD+V +L +S
Sbjct: 124 ----------KPDIVFFLELS 134
>gi|39939007|ref|NP_950773.1| thymidylate kinase [Onion yellows phytoplasma OY-M]
gi|39722116|dbj|BAD04606.1| thymidylate kinase [Onion yellows phytoplasma OY-M]
Length = 204
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 7/145 (4%)
Query: 60 LIVFEGLDGCGKS---HTSQTVAKKLKASLKSTPPSSI-MSLREKFDAHDSL--LRRAYY 113
LIVFEG+DG GK+ H Q + K + SS+ +R+ F + L R Y
Sbjct: 4 LIVFEGIDGSGKTSLIHALQPLLKTPHQLYQGLGSSSLGKEIRDLFLNFQQVDYLTRFYL 63
Query: 114 SLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDL 173
SL N +A ++ KQ +++DR+ ST AY + + LP + + L
Sbjct: 64 SLAN-MAQIQVELFKNKQLIILDRWLPSTYAYQLFPFFKEKKLTNLPLKQIFNINHETIL 122
Query: 174 MKPDLVIYLTVSEAIRLQRLSRRKN 198
KPDL+IYL + I R ++K+
Sbjct: 123 KKPDLLIYLEIDPQIGKTRKKKQKS 147
>gi|296109540|ref|YP_003616489.1| thymidylate kinase [methanocaldococcus infernus ME]
gi|295434354|gb|ADG13525.1| thymidylate kinase [Methanocaldococcus infernus ME]
Length = 184
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 44/202 (21%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNY- 118
IVFEG+DG GK+ S+ +AK+L P D L R+Y S GN
Sbjct: 2 FIVFEGIDGSGKTTLSKMLAKELSGYWTCEPT----------DGEIGRLIRSYLSSGNID 51
Query: 119 -------IAAQDIK--QDLQK-----QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD 164
AA ++ ++++K + V+ DR+ +S+ AY + L E++
Sbjct: 52 NISLSLLFAADRVEHCKEIEKVLNSGRDVICDRYLYSSIAYQSS----------LGVEEN 101
Query: 165 DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN 224
++ K +KPDLV L V ++R+ + F +N F E + Y +
Sbjct: 102 FLWEINKYAIKPDLVFLLVVDVDEAMKRVKGKDIF--------ENKNFLEKVQEKYLELA 153
Query: 225 NP-ELVFVDNSEKSVHESSNDI 245
+ +D + S+ E+ N +
Sbjct: 154 KRFNFIVIDTTNISIEEAYNKV 175
>gi|291009673|ref|ZP_06567646.1| thymidylate kinase [Saccharopolyspora erythraea NRRL 2338]
Length = 214
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 82/201 (40%), Gaps = 46/201 (22%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA--HDSL----LRRAYY 113
LIV EGLDG GK +T+A L A L S ++DA H L LR +
Sbjct: 4 LIVIEGLDGAGK----RTLADGLTAELSRRGRSVARVAFPRYDADVHAELVAEALRGGHG 59
Query: 114 SLGNYI-------------AAQDIKQDLQKQPVV-MDRFWHSTSAYGMANELVKNSDLKL 159
LG+ + AA ++ DL+ VV +DR+ S +AYG A
Sbjct: 60 DLGDSVHGMAVLYALDRRGAADALRVDLETHDVVLLDRYVASNAAYGAAR--------LH 111
Query: 160 PDEDDDIYSWPKDLM-------KPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNA 210
D D +W ++L +PDL + L V + R + R+ E + + +A
Sbjct: 112 QDAQGDFVAWTEELEIKRFALPRPDLQLLLQVPTEVAAGRAAHRERTEAERQRDNFESDA 171
Query: 211 KFRELLTTIY-----RNMNNP 226
+E +Y RN +P
Sbjct: 172 SLQERCGEVYAQLAERNWWSP 192
>gi|157956089|gb|ABW06432.1| thymidylate kinase [Wheat blue dwarf phytoplasma]
Length = 209
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 68/148 (45%), Gaps = 14/148 (9%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK-------STPPSSIMSLREKFDAHDSLLRRAY 112
LIVFEGLDG GK+ Q + +LK + S+ I L F D L R Y
Sbjct: 4 LIVFEGLDGSGKTSLIQYLQPQLKTPHQLYQGLGSSSIGKEIRDLFLNFQQVDY-LTRFY 62
Query: 113 YSLGNY--IAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
SL N I A+ K++ Q +++DR+ S AY + K P + +
Sbjct: 63 LSLANMAQIQAELFKKN---QLIILDRWLPSNFAYQLF-PFSKEKKQLFPLKKIFKLNHE 118
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKN 198
L+KPDL+IYL + I R ++KN
Sbjct: 119 TILIKPDLLIYLDIDPLIGRTRKKKQKN 146
>gi|425772476|gb|EKV10877.1| hypothetical protein PDIG_53650 [Penicillium digitatum PHI26]
gi|425774908|gb|EKV13199.1| hypothetical protein PDIP_48870 [Penicillium digitatum Pd1]
Length = 230
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 33/213 (15%)
Query: 49 DSGVGDDRKYPLIVFEGLDGCGKSHTSQT----------VAKKLKASLKSTPPSSIMSLR 98
DS R+ LIV EGLD GKS + V K ++ ++TP ++
Sbjct: 3 DSPAPPTRRGALIVVEGLDRAGKSSQCEMLRDSLSRQGRVVKYIRFPDRTTPIGQLIDSY 62
Query: 99 EKFDAH-DSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSD 156
+ +H D +S + A+ I++D+ + V++DR+ +S Y A N
Sbjct: 63 LRGTSHQDDHSIHLLFSANRWEIAKSIEEDITNGKTVIVDRYSYSGVVYSAAK---ANPT 119
Query: 157 LKLPDEDDDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKF 212
L L ++W + L +PD+ ++L++S + ++R F E ENE + +
Sbjct: 120 LSLE------WAWQPEIGLPRPDICLFLSISP----EEAAKRGGFGAERYENEAMQT-RV 168
Query: 213 RELLTTIYRNMNNPELVFVDNSEKSVHESSNDI 245
REL I+ ++ V + ++ K++ E S +I
Sbjct: 169 RELFRVIFEKQHD---VSIIDAGKAIDEVSREI 198
>gi|327399958|ref|YP_004340797.1| thymidylate kinase [Archaeoglobus veneficus SNP6]
gi|327315466|gb|AEA46082.1| Thymidylate kinase [Archaeoglobus veneficus SNP6]
Length = 190
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 92/211 (43%), Gaps = 47/211 (22%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM---------------SLREKFDAH 104
LI EG+DG GK+ T+AK LK L+ ++ SL ++ A
Sbjct: 2 LIAIEGIDGVGKT----TIAKFLKEELEKRGYEVVLLKEPTNSEWGRKIKASLNKRLSAE 57
Query: 105 DSL----LRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLP 160
+ L L R Y N + A Q + V+MDR+++S AY A L ++
Sbjct: 58 EELELFILDRKYNVEHNILPALK-----QGKIVIMDRYYYSNIAYQAARGLDAERIKRIN 112
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF--TLEENELKKNAKFRELLTT 218
+E P +PD+VI L I L+R+ R + E+ E K K RE+ +
Sbjct: 113 EE-----IAP----RPDIVILLDAPPEICLERIMERGEIPNSFEDPEYLK--KVREIFKS 161
Query: 219 IYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
+ N+ V VD S KS+ E D++ ++
Sbjct: 162 LKDNV-----VIVDAS-KSIDEVKKDVLRIV 186
>gi|91763270|ref|ZP_01265234.1| Thymidylate kinase (dTMP kinase) [Candidatus Pelagibacter ubique
HTCC1002]
gi|91717683|gb|EAS84334.1| Thymidylate kinase (dTMP kinase) [Candidatus Pelagibacter ubique
HTCC1002]
Length = 203
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 30/114 (26%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVA-----KKLKASLKSTPPSS---------IMSLREKFD 102
K P+IVFEG++G GKSH + VA KK+K P S I++ + F+
Sbjct: 3 KKPIIVFEGIEGTGKSHHIKNVANYLTRKKIKFIQIREPGGSRNSEKIRNLILNNKSTFN 62
Query: 103 AHDSLLRRAYYSLGNYIAAQD-----IKQDLQKQPVVMDRFWHSTSA---YGMA 148
LL Y++A+ I++++ K+ +++DRF ST A YGM
Sbjct: 63 KETDLLL--------YLSARSENMEIIRKNVGKKIILIDRFSDSTIAYQHYGMG 108
>gi|71083690|ref|YP_266410.1| thymidylate kinase [Candidatus Pelagibacter ubique HTCC1062]
gi|71062803|gb|AAZ21806.1| Thymidylate kinase (dTMP kinase) [Candidatus Pelagibacter ubique
HTCC1062]
Length = 203
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 30/114 (26%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVA-----KKLKASLKSTPPSS---------IMSLREKFD 102
K P+IVFEG++G GKSH + VA KK+K P S I++ + F+
Sbjct: 3 KKPIIVFEGIEGTGKSHHIKNVANYLTRKKIKFIQIREPGGSANSEKIRNLILNNKSTFN 62
Query: 103 AHDSLLRRAYYSLGNYIAAQD-----IKQDLQKQPVVMDRFWHSTSA---YGMA 148
LL Y++A+ I++++ K+ +++DRF ST A YGM
Sbjct: 63 KETDLLL--------YLSARSENIEIIRKNVGKKIILIDRFSDSTIAYQHYGMG 108
>gi|242792112|ref|XP_002481887.1| thymidylate kinase [Talaromyces stipitatus ATCC 10500]
gi|218718475|gb|EED17895.1| thymidylate kinase [Talaromyces stipitatus ATCC 10500]
Length = 238
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 99/213 (46%), Gaps = 35/213 (16%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTV----------AKKLKASLKSTPPS----SIMSLREK 100
+++ L+V EGLD GKS + + AK ++ +STP S + + +
Sbjct: 10 EKRGALVVVEGLDRAGKSSQCELLYKSLLGMNYKAKYIRFPDRSTPIGKQIDSYLRGQSQ 69
Query: 101 FDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
D H L +S + AQ I + + V++DR+ +S + Y A N +L L
Sbjct: 70 LDDHSIHL---LFSANRWELAQSIHEYIANGTTVIVDRYSYSGAVYSAAK---GNPNLSL 123
Query: 160 PDEDDDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK-FRELL 216
++W + L +PDL ++L++S + ++R + +E E K REL
Sbjct: 124 H------WAWQPEVGLPRPDLCLFLSISP----EEAAKRGGYGVERYETDSMQKRVRELF 173
Query: 217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
++ +N E+ +D + +SV E + DI++ +
Sbjct: 174 LSLLDLPHNDEICVID-AGQSVDEVAQDILDPV 205
>gi|429216949|ref|YP_007174939.1| thymidylate kinase [Caldisphaera lagunensis DSM 15908]
gi|429133478|gb|AFZ70490.1| thymidylate kinase [Caldisphaera lagunensis DSM 15908]
Length = 219
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 106/227 (46%), Gaps = 50/227 (22%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKA----SLKSTPPSS----------IMSLREKFD 102
K LI FEG+DG G + S+ + +KL S+ + P++ I+ +K D
Sbjct: 6 KGLLIAFEGIDGSGLTTHSKLLNEKLNKLGYKSIYTKEPTNNEIGILIQKIILDKNKKLD 65
Query: 103 AHDSLLR----RAYYSLGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDL 157
+ L R Y+ + A + I + K +V+ DR+ +S AY
Sbjct: 66 NNIIALLFAADRLYHLMYGDGANEGILSYISKNYIVISDRYKYSNMAY------------ 113
Query: 158 KLPDEDDDIYSWPKDL----MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL---KKNA 210
+ DDI +W L ++ D++IYL V + L+R+S R + ++ EN++ K
Sbjct: 114 ----QGDDI-NWISQLNKFAIEADIIIYLDVPLDVALKRISMRSSVSIFENKIFLEKVKN 168
Query: 211 KFRELLTTIYRNMNNPELVFV-----DNSEKSVHESSNDIVELIHNL 252
++ ++L N N ++V + +N EKS+ E S +I++ I N+
Sbjct: 169 RYNDILRL--ANKNGVKVVVINEIADNNREKSIDEVSEEILKNIINI 213
>gi|451993659|gb|EMD86131.1| hypothetical protein COCHEDRAFT_1198102 [Cochliobolus
heterostrophus C5]
gi|451999805|gb|EMD92267.1| hypothetical protein COCHEDRAFT_1173969 [Cochliobolus
heterostrophus C5]
Length = 216
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 93/228 (40%), Gaps = 56/228 (24%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL--------------KSTPPSSIMS--LREKFDA 103
LIVFEGLD GKS T +KL A L ++TP +++ L + D
Sbjct: 6 LIVFEGLDRAGKS----TQCEKLVADLQNDGIKVRHMRFPDRTTPIGQMINSYLSGQSDQ 61
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMAN-------ELVKNS 155
D ++ +S + A I+ +L V++DR+++S Y A E +
Sbjct: 62 EDHVI-HLLFSANRWETAPSIRANLAAGTTVIIDRYYYSGCVYSAAKQNPNMSLEWCRQP 120
Query: 156 DLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-NAKFRE 214
D+ LP +PDL ++L +S ++R F E+ E K + RE
Sbjct: 121 DVGLP--------------RPDLCLFLDIS----ADDAAKRGGFGTEKYEKKDMQDRVRE 162
Query: 215 LLTTIYRNMNNPELVFVDNS------EKSVHESSNDIVELI--HNLPM 254
L T+ + + V +D V E ++ +E + LP+
Sbjct: 163 LFETLMQKKEGEDFVRIDAGASLEEVAAKVREQADRCIERVAKGQLPL 210
>gi|342320529|gb|EGU12469.1| Deoxythymidylate kinase Thymidylate kinase [Rhodotorula glutinis
ATCC 204091]
Length = 228
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 89/213 (41%), Gaps = 36/213 (16%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTP----PSSIMSLREKFDAHDS----L 107
R+ IVFEGLD GKS Q + L A T P +S + D++ S L
Sbjct: 11 RRGAFIVFEGLDRSGKSTQVQRLVDALNARGVQTKGARFPDRTLSTGKMIDSYLSQKADL 70
Query: 108 LRRAY---YSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAY----GMANELVKNSDLKL 159
RA +S + A I +DL+ VV DR+ S A+ G++ + D+ L
Sbjct: 71 DDRAIHLLFSANRWERASQILEDLRNGVTVVCDRYAFSGIAFSAIKGLSWNWCRAPDVGL 130
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-NAKFRELLTT 218
P +PDLV++L VS + Q R F E E + AK + T
Sbjct: 131 P--------------QPDLVLFLRVSPEVAQQ----RGGFGQERYETSEVQAKVEKAFTK 172
Query: 219 IYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
+ +++ +D ++K V E +IV +
Sbjct: 173 LGQSVGKDVWTEID-ADKGVDEVHEEIVRRVEQ 204
>gi|332796217|ref|YP_004457717.1| dTMP kinase [Acidianus hospitalis W1]
gi|332693952|gb|AEE93419.1| dTMP kinase [Acidianus hospitalis W1]
Length = 189
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 27/202 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAH-----------DSLL 108
LI EG+DG GK+ T+AK+LK L++ ++ E F D +
Sbjct: 2 LIAIEGIDGSGKT----TLAKELKKWLENEKKKKVLLTAEPFTEEISKLIQEEGWKDPVT 57
Query: 109 RRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168
+S + I + Q ++ DR+++ST AY A + KN +++
Sbjct: 58 LTLLFSADRGVHVNWIMKQNQYDIIITDRYYYSTIAYQSAMGIDKNWIIEV--------- 108
Query: 169 WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPEL 228
K KP+L + L + I + R+ + F +E +L K RE I +N N+ ++
Sbjct: 109 -NKFFPKPELTLLLDIPAEIAITRIKKDDKFNFKE-KLSLLKKVRENYLEITKNENSIKI 166
Query: 229 VFVDNS-EKSVHESSNDIVELI 249
+ + E+ + E+ N + ELI
Sbjct: 167 INSTKTFEEVLSEAKNYVEELI 188
>gi|301060374|ref|ZP_07201237.1| dTMP kinase [delta proteobacterium NaphS2]
gi|300445570|gb|EFK09472.1| dTMP kinase [delta proteobacterium NaphS2]
Length = 212
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 35/216 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGN-- 117
I FEG++GCGKS T AK++ A L+ S I++ + +R+ S GN
Sbjct: 2 FITFEGIEGCGKS----TQAKRIAARLERAGVSCILTREPGGTPVGNDIRQILLSSGNRD 57
Query: 118 ---------YIA------AQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
Y A A +K L K+ V+ DRF+ +T+AY + DL +
Sbjct: 58 LPPLAELFLYEADRALHMASVVKPALAAKKWVLCDRFFDATTAY---QGYARGQDLHMTA 114
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRR---KNFTLEENELKKNAKFRELLTT 218
+++ S+ +KPD L ++ L+R +R ++ ++ F E +
Sbjct: 115 RLNEMASFG---IKPDKTFLLDCPVSVGLKRALKRNAESRVAGQDRFEQEKTAFHEAVRH 171
Query: 219 IYRNM--NNP-ELVFVDNSEKSVHESSNDIVELIHN 251
YR + NP V VD ++ V + DI + N
Sbjct: 172 GYRELAKQNPHRFVVVDATQTEVRLEA-DIFSCLRN 206
>gi|332523067|ref|ZP_08399319.1| dTMP kinase [Streptococcus porcinus str. Jelinkova 176]
gi|332314331|gb|EGJ27316.1| dTMP kinase [Streptococcus porcinus str. Jelinkova 176]
Length = 209
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 33/173 (19%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFD-AHDSLLRRAYYSL 115
K LI FEG DG GK+ +V + L LK+ + ++ RE A +R +
Sbjct: 3 KGKLITFEGPDGAGKT----SVIEGLIPLLKNINQTEMVVTREPGGVAIAESIREVILDI 58
Query: 116 GN-----------YIAAQDIKQDL---------QKQPVVMDRFWHSTSAYGMANELVKNS 155
N YIAA+ +Q L Q Q V++DRF S+ AY A +
Sbjct: 59 QNTAMDPKTELLLYIAAR--RQHLVEKVLPALNQGQIVLIDRFIDSSVAYQGAGRGLSKK 116
Query: 156 DLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK 208
D++ ++ + D +KPDL +Y +S I L R+++ K + +++K
Sbjct: 117 DIQWLND------FATDGVKPDLTLYFDISPEIGLARIAKNKKREINRLDMEK 163
>gi|146420481|ref|XP_001486196.1| hypothetical protein PGUG_01867 [Meyerozyma guilliermondii ATCC
6260]
Length = 215
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 100/203 (49%), Gaps = 22/203 (10%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-KASLKSTPPSS--IMSLREKF--DAHDSLLRRA--- 111
LI+ EGLD GK+ +Q + + +SL P S I ++ ++ D + SL +A
Sbjct: 5 LILIEGLDRSGKTTQTQILHNAIPSSSLIKFPDRSTNIGTIINQYLTDHNFSLSDQAAHL 64
Query: 112 YYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
+S + A I+ LQ V+MDR+ +S AY +A ++ S L + +Y+
Sbjct: 65 LFSANRWELAASIEDQLQAGHTVIMDRYIYSGIAYSLAK--LETSSLPEMASVEWLYAPD 122
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM----NNP 226
+ L KPD+ I+LT+ A ++ RK++ E E KF+E++ + + +P
Sbjct: 123 RGLPKPDVTIFLTLDIA----EMAARKSWGEERYE---QTKFQEVVKRCFLKVLDPHADP 175
Query: 227 ELVFVDNSEKSVHESSNDIVELI 249
+V VD ++ + E + I ++
Sbjct: 176 SVVIVDVNKLGIDEVALKIWTVV 198
>gi|407925805|gb|EKG18785.1| Thymidylate kinase [Macrophomina phaseolina MS6]
Length = 216
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 43/222 (19%)
Query: 60 LIVFEGLDGCGKSHTSQ---TVAKKLKASL-------KSTPPSSIMS--LREKFDAHDSL 107
LIVFEGLD GK+ S T ++L + ++TP +++ L + D +
Sbjct: 5 LIVFEGLDRAGKTTQSGRLVTCLQELGQRVQHMRFPDRTTPIGQMINAYLTGASEQEDHV 64
Query: 108 LRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDI 166
+ +S + AA IK + + VV+DR+++S Y A + N L L
Sbjct: 65 I-HLLFSANRWEAAAKIKSLIAEGTTVVIDRYYYSGCVYSAAKD---NPSLSL------- 113
Query: 167 YSWPK----DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKKNAKFRELLTTIYR 221
W + L +PDLVI+L +S ++ ++R F E+ E K + REL + +
Sbjct: 114 -EWARHPEVGLPRPDLVIFLDISP----EKAAQRGGFGSEKYENSKMQKRVRELFAEMKQ 168
Query: 222 -NMNNPELVFVDNSE------KSVHESSNDIVELI--HNLPM 254
+ V VD E ++V E+ +++E I N P+
Sbjct: 169 MQQEGQDFVTVDAGESEAVVARTVEEAVLEVIEHIDEQNGPL 210
>gi|149246800|ref|XP_001527825.1| thymidylate kinase [Lodderomyces elongisporus NRRL YB-4239]
gi|146447779|gb|EDK42167.1| thymidylate kinase [Lodderomyces elongisporus NRRL YB-4239]
Length = 237
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 36/224 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL----------------KSTPPSSIMS--LREKF 101
LI+ EGLD GKS + + KL + ++TP +++ L K
Sbjct: 6 LILIEGLDRSGKSTQASLLVSKLGHASSSSSPPCSSKLLKFPDRTTPIGKLINEYLTNKE 65
Query: 102 DAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMA----NELVKNSD 156
D + + Q+I L Q VV+DR+ +S AY +A ++ N+
Sbjct: 66 FQLDDQAAHLLFLANRWELNQEIHNLLNQGCFVVLDRYIYSGIAYTLAKNNLDDSEANTS 125
Query: 157 LKLPDEDDDIYS--W----PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-N 209
+ + ++ S W K L KPDL ++LT+ L+ +S+RK + E EL++
Sbjct: 126 ISRGKKSSNLASVDWLLGPDKGLPKPDLTMFLTLD----LEEISKRKGWGNERYELQQFQ 181
Query: 210 AKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI--HN 251
AK + I + + + +D EKS+ E +N + ++I HN
Sbjct: 182 AKVKRCFLQILNSNQDKSIEILDVGEKSIEEVTNQLWDVIVSHN 225
>gi|154249383|ref|YP_001410208.1| dTMP kinase [Fervidobacterium nodosum Rt17-B1]
gi|171769338|sp|A7HKW8.1|KTHY_FERNB RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|154153319|gb|ABS60551.1| dTMP kinase [Fervidobacterium nodosum Rt17-B1]
Length = 197
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 26/205 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS----LKSTPPSSIM---SLREKFDAHDSLLRRA- 111
+ FEG+DGCGKS + L+ +K P +RE + R
Sbjct: 2 FVSFEGIDGCGKSTQVNLLVNYLEEKGIPYIKVREPGGTHLGEKIRELLITQEMCARSEL 61
Query: 112 --YYSLGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSDLKLPDEDDDIY 167
+ + + IK L+ +V+ DRF HS+ AY G EL P+ +
Sbjct: 62 LLFLASRAQLVESVIKPALKNGKIVIADRFAHSSVAYQGCGRELG-------PETVKILN 114
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM--NN 225
+ D PD+V Y+ V + ++R+ + +E K+ +F E + Y M N
Sbjct: 115 DFATDKTYPDIVFYIDVPVNVAMERMKNQHKDRIE----KEGKEFWESIRNCYLKMAKEN 170
Query: 226 PELVFVDNSEKSVHESSNDIVELIH 250
V +D + +++ E +IV++ +
Sbjct: 171 ENFVIIDGT-RTIEEIHREIVKVFN 194
>gi|197294444|ref|YP_001798985.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
gi|171853771|emb|CAM11700.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
Length = 209
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 19/155 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA------SLKSTPPSSIM-SLREKFDAHDSL--LRR 110
+I+FEGLDG GK+ Q + ++L+A +L+ SSI +R+ F H++L R
Sbjct: 3 IIIFEGLDGSGKTTFIQNIKEELQAQNQEVITLQGLGSSSIGPQIRKMFLTHENLDNQTR 62
Query: 111 AYYSLGNYIAAQD---IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
S N I Q+ + +++DR+ S AY + K D ++ Y
Sbjct: 63 LLLSFSNMIQTQEEQITPHIFSNKIILIDRWLGSNFAYRIYPSQNK-RDYQI------FY 115
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE 202
+ +KPD+ +YL + I + R + N L+
Sbjct: 116 NLFNRFIKPDMTVYLKTNPEIGINRKRTQSNHKLD 150
>gi|427726146|ref|YP_007073423.1| thymidylate kinase [Leptolyngbya sp. PCC 7376]
gi|427357866|gb|AFY40589.1| Thymidylate kinase [Leptolyngbya sp. PCC 7376]
Length = 211
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 48/197 (24%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA----SLKSTPPSSIM-------SLREK--FDAHDS 106
IVFEG+DG G S ++ + + +A ++ S PS+ M +LR++ F +
Sbjct: 5 FIVFEGIDGSGSSTQAELLYQHFQAENIAAVLSPEPSNGMIGNMVREALRKRIRFTEDPA 64
Query: 107 LLRR--AYYSLG-------NYI--AAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNS 155
R AY G N I + +K D Q V+ R++ S+ AY AN
Sbjct: 65 QFNRQMAYLFAGDRHDHLYNEIDGVMKRLKADTQ---VITTRYYFSSLAYN-ANS----- 115
Query: 156 DLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL 215
P+E + IY +D PD+V Y + + L+R++RR + + E + K
Sbjct: 116 ----PEEYEFIYRLNQDFPNPDMVFYFDLPVEVALERVNRRSHQEIYETQTK-------- 163
Query: 216 LTTIYRNMNNPELVFVD 232
LT + NN E VF D
Sbjct: 164 LTQV---RNNYEQVFSD 177
>gi|167393075|ref|XP_001740414.1| thymidylate kinase [Entamoeba dispar SAW760]
gi|165895464|gb|EDR23144.1| thymidylate kinase, putative [Entamoeba dispar SAW760]
Length = 210
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 91/212 (42%), Gaps = 36/212 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPP---SSIMSLREKFDAHDSLLRRAY 112
LIV EG+D GKS +Q V + L+ S+K P + I L ++F +L ++
Sbjct: 8 LIVLEGIDQSGKSSAAQRVCEMLEKKGIQSIKQPFPDRSTDIGKLIDEFLHGKNLPQQVV 67
Query: 113 ---YSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANEL----VKNSDLKLPDEDD 164
YS + AQ IK+ L+K ++ DR+ S Y +AN L ++D LP
Sbjct: 68 HLLYSANRWEVAQKIKETLEKGITIICDRYAFSGIVYSIANGLDERWCNSADSGLP---- 123
Query: 165 DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN 224
KPD+V +L +S Q RRK + E N KF+ + Y
Sbjct: 124 ----------KPDIVFFLELSLEDAEQ---RRKTMKTDRYE---NIKFQSKVKCEYEKFK 167
Query: 225 NPELVFVDNSEKSVHESSNDIVELI-HNLPMF 255
+ ++ +S E + +I +I LP
Sbjct: 168 DSMKWTCIDARQSKEEVALEITSIIEQQLPQL 199
>gi|416406961|ref|ZP_11688206.1| Thymidylate kinase [Crocosphaera watsonii WH 0003]
gi|357260955|gb|EHJ10278.1| Thymidylate kinase [Crocosphaera watsonii WH 0003]
Length = 208
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 36/172 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTP---------------PSSIMSLRE 99
IV EG+D GK+ ++ + L A + S P P +M +E
Sbjct: 5 FIVLEGIDKAGKTTQAELLKHYLIKQNNSAIISSEPTEGVIGKLIRKAMQNPVFVMKDKE 64
Query: 100 KFDAHDSLLRRA--YYSLGNYIAA--QDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNS 155
KFD + L A +Y L N + + IKQD V+ R++ S+ AY N+
Sbjct: 65 KFDQQMAYLFAADRHYHLYNEVDGVYKLIKQD--HCHVIATRYYFSSLAYNTNNQ----- 117
Query: 156 DLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELK 207
+E D +Y K PD+VIYL + + L RL + N + E + K
Sbjct: 118 -----EEFDFVYGLNKRFPNPDVVIYLDIPLDVALCRLEKVTNKEVYETQEK 164
>gi|197294394|ref|YP_001798935.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
gi|171853721|emb|CAM11639.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
Length = 209
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 19/155 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA------SLKSTPPSSIM-SLREKFDAHDSL--LRR 110
+I+FEGLDG GK+ Q + ++L+A +L+ SSI +R+ F H++L R
Sbjct: 3 IIIFEGLDGSGKTTFIQNIKEELQAQNQEVITLQGLGSSSIGPQIRKMFLTHENLDNQTR 62
Query: 111 AYYSLGNYIAAQD---IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
S N I Q+ + +++DR+ S AY + K D ++ Y
Sbjct: 63 LLLSFSNMIQTQEEQITPHIFSNKIILIDRWLGSNFAYRIYPSQNK-RDYQI------FY 115
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE 202
+ +KPD+ +YL + I + R + N L+
Sbjct: 116 NLFNRFIKPDMTVYLKTNPEIGINRKRTQSNHKLD 150
>gi|229816418|ref|ZP_04446719.1| hypothetical protein COLINT_03471 [Collinsella intestinalis DSM
13280]
gi|229807960|gb|EEP43761.1| hypothetical protein COLINT_03471 [Collinsella intestinalis DSM
13280]
Length = 226
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 45/207 (21%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS----LKSTPPSSIMSLREKFDAHDSLLRRAYYSL 115
I EG+DGCGKS ++ +A L+A+ L+ P + + E+ + LL A +
Sbjct: 7 FITVEGIDGCGKSTQARLIAAALEAAGHDVLRLREPGGV-KISEQI--REILLDPANVEM 63
Query: 116 GNYIA--------AQDIKQDLQ-----KQPVVMDRFWHSTSAY-----GMANELVKNSDL 157
G+ AQ + Q ++ + VV DRF+ ST+AY G+ +V ++
Sbjct: 64 GDVCELLLYEAARAQLVHQVIRPALAAGKTVVCDRFYDSTTAYQAFADGLDRNMVSQAN- 122
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIY--LTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL 215
D +PDL + L V +A+R RR E+ K +F+E
Sbjct: 123 ----------ELAVDGCRPDLTLVFDLPVEDALR-----RRSGREAEDRLELKGLEFQER 167
Query: 216 LTTIYR--NMNNPELVFVDNSEKSVHE 240
+ +R ++ P+ V + ++ S+ E
Sbjct: 168 VAAGFRAVAVDEPDRVKLIDAGGSIAE 194
>gi|438118367|ref|ZP_20871344.1| thymidylate kinase [Spiroplasma melliferum IPMB4A]
gi|434155794|gb|ELL44712.1| thymidylate kinase [Spiroplasma melliferum IPMB4A]
Length = 214
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 92/202 (45%), Gaps = 33/202 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGN-- 117
I EG+DG GK+ T++K LK L+S +++ + +R S N
Sbjct: 3 FITLEGIDGSGKT----TISKLLKEKLRSEGYQVVLTREPGGNEIAEQIRNVILSKHNLG 58
Query: 118 ---------YIAA--QDIKQDL-----QKQPVVMDRFWHSTSAY-GMANELVKNSDLKLP 160
YIAA Q + +D+ + + V+ DRF STSAY G A L ++
Sbjct: 59 MDPWTEALLYIAARRQHVVEDILPALKRGEIVICDRFMDSTSAYQGYARGL----GIRTL 114
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY 220
DE + S KPDL ++ + + +R+ R + + +L+KN+ F + + Y
Sbjct: 115 DE---VQSIVLGTTKPDLTLFFDIEPTMASERMKVRNDVEMNRLDLEKNS-FHKKVYEGY 170
Query: 221 RNM--NNPELVFVDNSEKSVHE 240
+ + N E + V ++ K V+E
Sbjct: 171 QVLISENAERIKVIDASKPVNE 192
>gi|67925004|ref|ZP_00518388.1| Thymidylate kinase [Crocosphaera watsonii WH 8501]
gi|67853148|gb|EAM48523.1| Thymidylate kinase [Crocosphaera watsonii WH 8501]
Length = 208
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 36/172 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTP---------------PSSIMSLRE 99
IV EG+D GK+ ++ + L A + S P P +M +E
Sbjct: 5 FIVLEGIDKAGKTTQAELLKHYLIKQNNSAIISSEPTEGVIGKLIRKAMQNPVFVMKDKE 64
Query: 100 KFDAHDSLLRRA--YYSLGNYIAA--QDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNS 155
KFD + L A +Y L N + + IKQD V+ R++ S+ AY N+
Sbjct: 65 KFDQQMAYLFAADRHYHLYNEVDGVYKLIKQD--HCHVIATRYYFSSLAYNTNNQ----- 117
Query: 156 DLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELK 207
+E D +Y K PD+VIYL + + L RL + N + E + K
Sbjct: 118 -----EEFDFVYGLNKRFPNPDVVIYLDIPLDVALCRLEKVTNKEVYETQEK 164
>gi|429965021|gb|ELA47018.1| thymidylate kinase [Vavraia culicis 'floridensis']
Length = 231
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 107/233 (45%), Gaps = 39/233 (16%)
Query: 34 ELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS 93
EL Y +I++ + + RK+ IV EG+D GKS + + ++LK + ++ P
Sbjct: 17 ELPKKYYKISKDGSYQAHMAGKRKF--IVIEGIDRSGKSTLCRKLVERLKETATNSSPVL 74
Query: 94 I--------------MSLREK--FDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDR 137
I + L+++ F+ S L +S + +++K+ L+ V+ DR
Sbjct: 75 INYPDRTTTIGKLVNLYLKKQITFNKETSHL---LFSANRWEKNEEVKKLLKDHVVICDR 131
Query: 138 FWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+++S AY +A D K E D + L++PD++++L V R R+
Sbjct: 132 YFYSGIAYSIA----LGVDEKWAREPD------RGLIEPDILVFLDVQP----HRTVTRE 177
Query: 198 NFTLEENELKKNAKFRE-LLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
+F E+ N +E + + + + + V + KSV E+ N++ +L+
Sbjct: 178 DFG---EEIYDNLDIQEKIYLQLKKCCSESKNCVVIDGHKSVEEAVNEVYDLL 227
>gi|85057502|ref|YP_456418.1| thymidylate kinase [Aster yellows witches'-broom phytoplasma AYWB]
gi|84789607|gb|ABC65339.1| thymidylate kinase [Aster yellows witches'-broom phytoplasma AYWB]
Length = 210
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 27/159 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA------SLKSTPPSSI-MSLREKFDAHDSL--LRR 110
+IVFEGLDG GK+ Q + K+L+ +L+ SSI LR+ F + L L R
Sbjct: 3 IIVFEGLDGSGKTTLIQKIRKQLEKQGHEVINLQGLGSSSIGQPLRDIFLTNSQLKPLTR 62
Query: 111 AYYSLGNY--IAAQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
S N I ++IK L +++ DR+ S AY P D Y
Sbjct: 63 YLLSFANMQQIQEEEIKPHLATNKIILIDRWLGSNLAYQAY-----------PHNIDKNY 111
Query: 168 S----WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE 202
K +KP++ +YL + + L+R +K+ L+
Sbjct: 112 QLFNLLNKQFIKPNMTVYLKIKPQLGLERKQNQKDHKLD 150
>gi|16975316|pdb|1E9F|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And Adp
Length = 217
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 49/211 (23%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+DG GKS S+ + + L A+ +ST ++S L++K D
Sbjct: 7 RRGALIVLEGVDGAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 66
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +V+DR+ S A+ A E K D+
Sbjct: 67 EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV 125
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQR------LSRRKNFTLEENELKKNAK 211
LP KPDLV++L + A +R L R +N +E L+
Sbjct: 126 GLP--------------KPDLVLFLQLQLADAAKRGRARGELERYENGAFQERALR---C 168
Query: 212 FRELL--TTIYRNMNNPELVFVDNSEKSVHE 240
F +L+ TT+ N ++V S ++VHE
Sbjct: 169 FHQLMKDTTL-----NWKMVDASKSIEAVHE 194
>gi|226287197|gb|EEH42710.1| thymidylate kinase [Paracoccidioides brasiliensis Pb18]
Length = 232
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 97/203 (47%), Gaps = 31/203 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK-----ASLKSTP--PSSIMSLREKFDAHDSLLR--- 109
LIV EGLD GKS + K L+ + P ++I L + DS L
Sbjct: 15 LIVVEGLDRAGKSTQCALLQKTLQREGHEVKYRRFPDRTTAIGKLINAYLVGDSQLDDHS 74
Query: 110 -RAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
+S + AA++I++D+ +++DR+ +S + Y A + +P D +
Sbjct: 75 IHLLFSANRWEAAKEIQKDISNGISIIIDRYSYSGAVYSAAKD--------VPGLSLD-W 125
Query: 168 SWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFRELLTTIYRNM 223
+W + L +PD+ ++L +S + +RR + LE EN++ + A+ R+L T +
Sbjct: 126 AWQPEIGLPQPDIWLFLNISP----EEAARRGGYGLERYENDILQ-ARVRQLFQT-FIER 179
Query: 224 NNPELVFVDNSEKSVHESSNDIV 246
+P V V N+ +S + + DI+
Sbjct: 180 EDPANVCVINAGRSEADVAQDIL 202
>gi|50548641|ref|XP_501790.1| YALI0C13354p [Yarrowia lipolytica]
gi|49647657|emb|CAG82100.1| YALI0C13354p [Yarrowia lipolytica CLIB122]
Length = 204
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 42/211 (19%)
Query: 60 LIVFEGLDGCGKS--------HTSQTVAKK---LKASLKSTPPSSIMS--LREKFDAHDS 106
I EGLD GKS H ++T K K +STP I++ L D
Sbjct: 5 FIAIEGLDRSGKSTQCDRLVAHLTETTGNKTHLFKFPDRSTPMGQIINQYLTSGVALSDQ 64
Query: 107 LLRRAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHS----TSAYGMANELVKNSDLKLPD 161
+ +S + +DIK L+K + VV+DR++ S T A G+ + N DL LP
Sbjct: 65 AIH-LLFSANRWERIEDIKALLEKGENVVLDRYYISGIVYTQAKGLERQWCTNPDLGLP- 122
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYR 221
PD+ ++LTVS + QR + E +K A F++ + ++
Sbjct: 123 -------------VPDITLFLTVSPEVASQRGA------YGEERYEKIA-FQKRVAALFH 162
Query: 222 NMNNPELVFVDNS--EKSVHESSNDIVELIH 250
+ + VD S E+ V + N VE +
Sbjct: 163 EVAQRNCITVDASGTEEEVANAINQCVETVQ 193
>gi|374369122|ref|ZP_09627159.1| thymidylate kinase [Cupriavidus basilensis OR16]
gi|373099272|gb|EHP40356.1| thymidylate kinase [Cupriavidus basilensis OR16]
Length = 204
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 24/141 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKF------DAHDSLLRRAYY 113
I FEG+DG GKS + VA +L+A L T +S+++ RE D LL R +
Sbjct: 5 FITFEGIDGAGKSTHVEWVADRLRARLAGT--ASVVTTREPGGTPLGEDLRQLLLHRKMH 62
Query: 114 ----SLGNYIA-----AQDIKQDLQKQP-VVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
+L + A A+ I+ L + VV DRF +T AY + + L++
Sbjct: 63 LETEALLMFAARREHIAEVIEPALTRGDWVVSDRFTDATFAYQGGGRGLPRARLEV---- 118
Query: 164 DDIYSWPKDLMKPDLVIYLTV 184
+ +W +D ++PDL + V
Sbjct: 119 --LEAWVQDGLQPDLTLLFDV 137
>gi|303319671|ref|XP_003069835.1| thymidylate kinase, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240109521|gb|EER27690.1| thymidylate kinase, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|320034114|gb|EFW16059.1| thymidylate kinase [Coccidioides posadasii str. Silveira]
Length = 228
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 32/209 (15%)
Query: 55 DRKYP---LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP----PSSIMSLREKFDAH--- 104
DRK LIV EGLD GKS + KL+ T P S+ + D +
Sbjct: 11 DRKMARGALIVIEGLDRAGKSTQCAILVDKLREKGHETKYIRFPDRTTSIGKIIDGYLRG 70
Query: 105 ----DSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKL 159
D +S + A I+QD+ +V+DR+ +S + Y A N +L L
Sbjct: 71 ETQLDDHAIHLLFSANRWELASQIRQDISNGISIVIDRYSYSGAVYSAAK---NNRELSL 127
Query: 160 PDEDDDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKKNAKFRELL 216
++W + L +PDL +L +S ++ R + LE E + + EL
Sbjct: 128 E------WAWQSEIGLPRPDLWFFLNISP----EKAESRGGYGLERYENVTLQLRVGELF 177
Query: 217 TTIYRNMNNPELVFVDNSEKSVHESSNDI 245
++ NN E+ +D + +S + + DI
Sbjct: 178 KSMQGMENNEEMRIID-ANQSKEQVARDI 205
>gi|448120200|ref|XP_004203917.1| Piso0_000941 [Millerozyma farinosa CBS 7064]
gi|359384785|emb|CCE78320.1| Piso0_000941 [Millerozyma farinosa CBS 7064]
Length = 200
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 35/181 (19%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL 115
R +P I+ G GCGKS + ++ +LK K P S I R+ D++D +L +
Sbjct: 4 RYHPNIIITGTPGCGKSSHATSLVSQLKDPFKHFPISDIAKERKCIDSYDEVLDTSVVDE 63
Query: 116 GNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK 175
+ + ++ DL+ ++D WH + P+ L+
Sbjct: 64 DKLLDS--LEPDLENGGAIID--WHCCEVF------------------------PERLI- 94
Query: 176 PDLVIYLTVSEAIRLQRLSRR--KNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDN 233
DLV+ L QRL R KN ++EN + + E++ R+ P +V N
Sbjct: 95 -DLVVVLRTENKKLYQRLVSRGYKNNKIQEN---LDCEIMEIIAQEARDSYEPNIVVELN 150
Query: 234 S 234
S
Sbjct: 151 S 151
>gi|359403131|ref|ZP_09196038.1| thymidylate kinase [Spiroplasma melliferum KC3]
gi|357968348|gb|EHJ90857.1| thymidylate kinase [Spiroplasma melliferum KC3]
Length = 214
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 33/202 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGN-- 117
I EG+DG GK+ T++K LK L+S +++ + +R S N
Sbjct: 3 FITLEGIDGSGKT----TISKLLKEKLRSEGYQVVLTREPGGNEIAEQIRNVILSKHNLG 58
Query: 118 ---------YIAA--QDIKQDL-----QKQPVVMDRFWHSTSAY-GMANELVKNSDLKLP 160
YIAA Q + +D+ + + V+ DRF STSAY G A L ++
Sbjct: 59 MDPWTEALLYIAARRQHVVEDILPALKRGEIVICDRFMDSTSAYQGYARGL----GIRTL 114
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY 220
DE + S KPDL ++ + + +R+ R + +L+KN+ F + + Y
Sbjct: 115 DE---VQSIVLGTTKPDLTLFFDIEPTMASERMKVRNEVEMNRLDLEKNS-FHKKVYEGY 170
Query: 221 RNM--NNPELVFVDNSEKSVHE 240
+ + N E + V ++ K V+E
Sbjct: 171 QVLISENAERIKVIDASKPVNE 192
>gi|15606283|ref|NP_213662.1| thymidylate kinase [Aquifex aeolicus VF5]
gi|6016457|sp|O67099.1|KTHY_AQUAE RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|158429380|pdb|2PBR|A Chain A, Crystal Structure Of Thymidylate Kinase (Aq_969) From
Aquifex Aeolicus Vf5
gi|158429381|pdb|2PBR|B Chain B, Crystal Structure Of Thymidylate Kinase (Aq_969) From
Aquifex Aeolicus Vf5
gi|2983484|gb|AAC07063.1| thymidylate kinase [Aquifex aeolicus VF5]
Length = 195
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 31/158 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK-----ASLKSTPPSSIMS-------LREKFDAHDSL 107
LI FEG+DG GK+ ++ + + LK SL P + + L E+ D L
Sbjct: 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLTEELDERTEL 61
Query: 108 LRRAYYSLGNYIAAQDIKQDLQKQPVV-MDRFWHSTSAY-----GMANELVKNSDLKLPD 161
L + + + + + I DL++ VV +DRF ST AY G+ E +KN
Sbjct: 62 L--LFEASRSKLIEEKIIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKN------- 112
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF 199
+ + +KPD+ + L + I L+RL + F
Sbjct: 113 ----LNEFATRGVKPDITLLLDIPVDIALRRLKEKNRF 146
>gi|190345821|gb|EDK37769.2| hypothetical protein PGUG_01867 [Meyerozyma guilliermondii ATCC
6260]
Length = 215
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 99/203 (48%), Gaps = 22/203 (10%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-KASLKSTPPSS--IMSLREKF--DAHDSLLRRA--- 111
LI+ EGLD GK+ +Q + + +SL P S I ++ ++ D + SL +A
Sbjct: 5 LILIEGLDRSGKTTQTQILHNAIPSSSLIKFPDRSTNIGTIINQYLTDHNFSLSDQAAHL 64
Query: 112 YYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
+S + A I+ LQ V+MDR+ +S AY +A +S E +Y+
Sbjct: 65 LFSANRWELAASIEDQLQAGHTVIMDRYIYSGIAYSLAKSETSSSPEMASVEW--LYAPD 122
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM----NNP 226
+ L KPD+ I+LT+ + ++ RK++ E E KF+E++ + + +P
Sbjct: 123 RGLPKPDVTIFLTLD----IAEMAARKSWGEERYE---QTKFQEVVKRCFLKVLDPHADP 175
Query: 227 ELVFVDNSEKSVHESSNDIVELI 249
+V VD ++ + E ++ I ++
Sbjct: 176 SVVIVDVNKLGIDEVASKIWTVV 198
>gi|403366547|gb|EJY83076.1| Thymidylate kinase [Oxytricha trifallax]
Length = 245
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 86/211 (40%), Gaps = 38/211 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA---HDSLLRR------ 110
IVFEGLD GKS S VAK K L+ + R+ +D L R
Sbjct: 22 FIVFEGLDRSGKSTQSSRVAKYFKEELQRKTETMSFPKRDTNGGKMLNDYLQNRENKLND 81
Query: 111 ----AYYSLGNYIAAQDIKQDLQKQP-VVMDRFWHSTSAY----GMANELVKNSDLKLPD 161
++ + DI Q L+ ++ DR+ S AY G+ E KNSD
Sbjct: 82 KAVHTLFAFNRWEMVPDIIQMLKNGTNIICDRYAFSGVAYSAAKGLDFEWCKNSD----- 136
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKKNAKFRELLTTIY 220
+ L+ PDL Y+ V+ + L++R N+ E E L K +
Sbjct: 137 ---------RGLVTPDLTFYIDVAPDV----LAQRGNYGDERYERLDFQTKVGHVYDRFK 183
Query: 221 RNMNNPE-LVFVDNSEKSVHESSNDIVELIH 250
++ + E +D S +SV E + I++ I+
Sbjct: 184 QDFKDSEHWATIDASNQSVEELTAQIIDKIN 214
>gi|254166701|ref|ZP_04873555.1| thymidylate kinase [Aciduliprofundum boonei T469]
gi|289596133|ref|YP_003482829.1| thymidylate kinase [Aciduliprofundum boonei T469]
gi|197624311|gb|EDY36872.1| thymidylate kinase [Aciduliprofundum boonei T469]
gi|289533920|gb|ADD08267.1| thymidylate kinase [Aciduliprofundum boonei T469]
Length = 197
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 32/209 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA-----SLKSTPPSSIMS--LREKFDAHDSLLRRAY 112
IVFEG+DG GKS ++ +AK L + L P ++ M +R + + L +A
Sbjct: 2 FIVFEGIDGSGKSTIARRIAKHLSSLGHDIFLTEEPTTTWMGKDVRRAIEEEKNPLSQAL 61
Query: 113 YSLGNYIA-AQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
+ + IK++L+ +V+ DR+ +ST AY A ++ K L D W
Sbjct: 62 LFFADRAEHVEAIKKNLEDGKIVISDRYVYSTFAYQGA-QMEKLMPL------DKALKWL 114
Query: 171 KDL-----MKPDLVIYLTVSEAIRLQRLSRR---KNFTLEENELKKNAKFRELLTTIYRN 222
+ + + PD+VI L + L ++ R + F EE F E + IY +
Sbjct: 115 EGVYEPMRLDPDMVILLKIEPRRGLDFVNTRDFKEKFEREE--------FLERVQDIYMD 166
Query: 223 MNNPELVFVDNSEKSVHESSNDIVELIHN 251
+ + FV +S ++++E D+ ++I +
Sbjct: 167 LADKYGFFVVDSNRNLNEVYEDVRKIIDD 195
>gi|391870631|gb|EIT79808.1| thymidylate kinase/adenylate kinase [Aspergillus oryzae 3.042]
Length = 225
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 94/202 (46%), Gaps = 31/202 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP----PSSIMSLREKFDAH-------DSLL 108
LIV EGLD GKS +++ L+ S S P ++ + D++ D
Sbjct: 14 LIVVEGLDRAGKSSQCESLRDYLQESGHSVKYVRFPDRTTAIGKLIDSYLRGQSQLDDHS 73
Query: 109 RRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
+S + A+ I++D+ K V++DR+ +S + Y A + L L +
Sbjct: 74 IHLLFSANRWEIAKVIEEDIAKGITVIVDRYSYSGAVYSAAKGI---PTLSLG------W 124
Query: 168 SWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFRELLTTIYRNM 223
+W + L +PD+ ++L +S ++R F +E ENE ++ + REL T++
Sbjct: 125 AWQPEVGLPRPDMCLFLRISPT----EAAKRGGFGVERYENETMQS-RVRELFQTLFDLQ 179
Query: 224 NNPELVFVDNSEKSVHESSNDI 245
N + + V N+ +S E S +I
Sbjct: 180 PNGD-IHVVNAGRSFQEVSEEI 200
>gi|294659478|ref|XP_002770590.1| DEHA2G07260p [Debaryomyces hansenii CBS767]
gi|199433995|emb|CAR65925.1| DEHA2G07260p [Debaryomyces hansenii CBS767]
Length = 214
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 37/200 (18%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL 115
R+YP I+ G GCGKS + + +LK K S I R+ +++D L +
Sbjct: 4 REYPNIIITGTPGCGKSSHAANLVSQLKEPYKHFSISDIAKERKCIESYDEKLDTSVVDE 63
Query: 116 GNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK 175
+ + ++ DL+K +++D WH DI+ P+ L+
Sbjct: 64 DKLLDS--LEGDLEKGGILVD--WHCC----------------------DIF--PERLI- 94
Query: 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKN--AKFRELLTTIYRNMNNPELV--FV 231
DLV+ L I RL++R +EN++++N + E++ R PE+V +
Sbjct: 95 -DLVVVLRTDNKILFDRLNKR---GYKENKVQENLDCEIMEVILQDARESYIPEIVIELM 150
Query: 232 DNSEKSVHESSNDIVELIHN 251
NS + + E+ + ++ N
Sbjct: 151 SNSAEEMDENVDRLIAWAEN 170
>gi|429962618|gb|ELA42162.1| thymidylate kinase [Vittaforma corneae ATCC 50505]
Length = 186
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 34/204 (16%)
Query: 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASL------KSTPPSSIMS--LREKFDAHDSLLR 109
+ LIV EGLD GK+ S + ++L+ ++T ++ L+++ D +
Sbjct: 3 FKLIVLEGLDRSGKTTVSSMLQQRLQPCTIIRFPNRATETGKLLDKFLKKQIKFSDHTIH 62
Query: 110 RAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAY----GMANELVKNSDLKLPDEDDD 165
YS Y I+ L+ V+ DR+W S + Y G+ E K++D LP
Sbjct: 63 -LLYSANRYEEETRIRDLLKSTHVICDRYWLSGAVYSTAKGLDFEWCKSTDKLLP----- 116
Query: 166 IYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNN 225
+PD +L V ++ S+R F NE+ +F+ + IY++
Sbjct: 117 ---------QPDFTFFLDVP----VEETSKRTCFG---NEVHDKIEFQRKVYEIYKSKVE 160
Query: 226 PELVFVDNSEKSVHESSNDIVELI 249
E V+ N + + I+E +
Sbjct: 161 EEGVYEINGLQEPEKIVEAILECL 184
>gi|272761174|gb|ACZ95827.1| thymidylate kinase [Jujube witches'-broom phytoplasma]
Length = 212
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK-------STPPSSIMSLREKFDAHDSLLRRAY 112
LIVFEGLDG GK+ + +LK + S+ I L F D + R Y
Sbjct: 3 LIVFEGLDGSGKTSLIHALQPQLKTPHQLYQGLGSSSLGKEIRDLFLNFQQVD-YITRFY 61
Query: 113 YSLGNY--IAAQDIKQDLQ-KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
SL N I A+ I L+ Q +++DR+ ST AY + K LP + +
Sbjct: 62 LSLANMSQIQAELIVPQLKNNQLIILDRWLPSTYAYQLF-PFSKEKKQLLPLKKIFKINH 120
Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRKN 198
L KPDL+IYL + I R +KN
Sbjct: 121 ETILKKPDLLIYLDIDPLIGRTRKKNQKN 149
>gi|301118893|ref|XP_002907174.1| thymidylate kinase [Phytophthora infestans T30-4]
gi|262105686|gb|EEY63738.1| thymidylate kinase [Phytophthora infestans T30-4]
Length = 216
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 43/187 (22%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS-------------SIMSLREKFD 102
R+ ++FEG+D CGK+ ++ + L AS S P + SI S +
Sbjct: 3 RRGIFLLFEGVDRCGKTTQTKLLHDALNASSSSQPSALLHFPDRSTAIGKSIHSYLTSSE 62
Query: 103 AHDSLLRRAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAY-----GMANELVKNSD 156
A D + +S + AA I+ L Q ++MDR+ S A+ GM+ + +
Sbjct: 63 AMDDHVIHLLFSANRWEAASKIESILASGQHIIMDRYSFSGVAFSAAKSGMSLDWCWAPE 122
Query: 157 LKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL 216
+ LP KPD +I+L V + + S R +F E E F+E
Sbjct: 123 IGLP--------------KPDAIIFLDVP----VTQASTRADFGQERYE---TTAFQE-- 159
Query: 217 TTIYRNM 223
+YRN
Sbjct: 160 -KVYRNF 165
>gi|194246795|ref|YP_002004434.1| thymidylate kinase [Candidatus Phytoplasma mali]
gi|193807152|emb|CAP18590.1| Thymidylate kinase [Candidatus Phytoplasma mali]
Length = 205
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 37/155 (23%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM-------------SLREKFDAHDS 106
LIVFEG+DG GK+ T+ L +LK+ P+S + S+RE F +
Sbjct: 3 LIVFEGIDGTGKT----TLINNLAQTLKTIQPNSKVIIINGLGSTNIGTSIREMFLFNPK 58
Query: 107 LL--RRAYYSLGNYIAAQD--IKQDLQKQPVV-MDRFWHSTSAYGMANELVKNSDLKLPD 161
++ R + S N I Q+ IK L+ ++ MDR+ S AY P
Sbjct: 59 MISETRYFLSFANLIQIQNELIKPHLKTNTIILMDRYLGSNFAYQ-----------AYPF 107
Query: 162 EDDDIYS----WPKDLMKPDLVIYLTVSEAIRLQR 192
+ D YS K +KP + + + + I L+R
Sbjct: 108 QIDPHYSIFQLIQKKFLKPQITVLIDLEPKIALKR 142
>gi|75706618|gb|ABA25861.1| thymidylate kinase [Phytoplasma sp. CPh]
Length = 209
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 14/148 (9%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK-------STPPSSIMSLREKFDAHDSLLRRAY 112
LIVFEGLDG GK+ + +LK + S+ I L F D L R Y
Sbjct: 4 LIVFEGLDGSGKTSLINYLQPQLKTPHQLYQGLGSSSLGKEIRDLFLNFQQVD-YLTRFY 62
Query: 113 YSLGNY--IAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
SL N I A+ K++ Q +++DR+ ST AY + K P + +
Sbjct: 63 LSLANMAQIQAELFKKN---QLIILDRWLPSTYAYQLF-PFSKEKQQLFPLKKIFKLNHE 118
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKN 198
L KPDL+IYL + I R ++KN
Sbjct: 119 TILNKPDLLIYLDIDPLIGRTRKKKQKN 146
>gi|445063009|ref|ZP_21375289.1| thymidylate kinase [Brachyspira hampsonii 30599]
gi|444505607|gb|ELV06089.1| thymidylate kinase [Brachyspira hampsonii 30599]
Length = 185
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 34/192 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYS----- 114
LIV EG+DG GKS ++ L +L + SI + + S LR + S
Sbjct: 5 LIVLEGIDGSGKS----SIGMMLTDTLNNLGIKSIYTFEPTHAYYGSKLRESMLSKDLKP 60
Query: 115 ---LGNYIA--AQDIKQDLQ-----KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD 164
L +IA + IK ++ +V+DR+ +S+ AY A + K
Sbjct: 61 EEELSLFIADRKEHIKHMIKPAVNDGYVIVLDRYMYSSIAYQGAKGIDKEY--------- 111
Query: 165 DIYSWPKD-LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM 223
IY+ KD +++PDLV L + L R+ ++ F + +N + E + I+ +
Sbjct: 112 -IYNLHKDFILQPDLVFILHLDIETALNRIMEKRGFV----DRFENKNYLEEVDKIFFSF 166
Query: 224 NNPELVFVDNSE 235
N P + +D S+
Sbjct: 167 NAPYIHHIDASK 178
>gi|321452944|gb|EFX64236.1| hypothetical protein DAPPUDRAFT_231894 [Daphnia pulex]
Length = 209
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 91/207 (43%), Gaps = 29/207 (14%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLK-----ASLKSTPPSS--IMSLREKF----DAH 104
++ LIV EG D GK+ Q + L+ A L P S I SL K+
Sbjct: 3 KRGALIVLEGCDRSGKTTLCQKAIRWLQESNKEAHLMRFPDRSTIIGSLINKYLECSTEL 62
Query: 105 DSLLRRAYYSLGNYIAAQDIKQDLQKQP-VVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
D +S + DIK+ LQK V++DR+ +S A+ A N DL+ +
Sbjct: 63 DDYAIHLLFSANRWELLPDIKKLLQKGTNVIVDRYSYSGIAFSAAK---PNMDLRWCQQS 119
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM 223
D L+KPDLVI+L + + + Q R + E E N + ++++ + Y +
Sbjct: 120 D------SGLLKPDLVIFLDI-DPVEAQ---TRGQYGSERYE---NLEMQKVVRSNYLKL 166
Query: 224 NNPELVFVDNSEKSVHESSNDIVELIH 250
+ VD S +S+ E D+ L+
Sbjct: 167 QDESWKVVDAS-RSMEEVGRDVCRLVQ 192
>gi|366995629|ref|XP_003677578.1| hypothetical protein NCAS_0G03390 [Naumovozyma castellii CBS 4309]
gi|342303447|emb|CCC71226.1| hypothetical protein NCAS_0G03390 [Naumovozyma castellii CBS 4309]
Length = 214
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 35/210 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK--ASLKSTP--PSSIMSLREKF--DAHDSLLRRAY- 112
LI+ EGLD GK+ + + +LK A L P ++I L ++ D + +L ++
Sbjct: 6 LILIEGLDRTGKTTQTSILTDRLKPNAQLIKFPDRSTTIGKLINQYLTDKNFNLPNQSVH 65
Query: 113 --YSLGNYIAAQDIKQD-LQKQPVVMDRFWHSTSAYGMANELVKNSDLKL---PDEDDDI 166
+S + A++IK+ L V++DR+ +S AY A + V DL+ PD
Sbjct: 66 LLFSANRWEVAENIKETLLNGTNVILDRYVYSGIAYSAAKD-VDGMDLQWCLNPD----- 119
Query: 167 YSWPKDLMKPDLVIYLTVSEAIRLQRLS----RRKNFTLEENELKKN--AKFRELLTTIY 220
K L+KPDL ++LT +R R +N ++ ++KK A F E T
Sbjct: 120 ----KGLLKPDLTLFLTNESNDDAERDGFGEERYENVQFQK-KVKKQFYAAFTEFETP-- 172
Query: 221 RNMNNPELVFVDNSEKSVHESSNDIVELIH 250
N+ L VD + KS+ E S +I +L+
Sbjct: 173 ---NSNTLKLVDVTNKSIEEVSEEIWKLVQ 199
>gi|431912281|gb|ELK14418.1| Thymidylate kinase [Pteropus alecto]
Length = 212
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 98/226 (43%), Gaps = 49/226 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + + L+A+ +ST ++S L +K +
Sbjct: 4 RRGALIVLEGVDRAGKSTQSRKLVEALRAAGHCAELLRFPERSTEIGKLLSSYLEKKREV 63
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +V+DR+ S A+ A E K D+
Sbjct: 64 EDHSV-HLLFSANRWEQVPLIKEKLGQGVTLVVDRYAFSGVAFTSAKENFHLDWCKQPDV 122
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE-LL 216
LP KPDLV++L + A+ + R F E E N F+E +L
Sbjct: 123 GLP--------------KPDLVVFLQLQLAV----AAARGEFGRERYE---NRAFQERVL 161
Query: 217 TTIYRNMNNPELVF--VDNSE--KSVHES----SNDIVELIHNLPM 254
++ M +P L + VD S + VHE S DI+ P+
Sbjct: 162 QRFHQLMRDPALNWKVVDASRSIEDVHEEIRVLSEDIIWAATQQPL 207
>gi|255712129|ref|XP_002552347.1| KLTH0C02728p [Lachancea thermotolerans]
gi|238933726|emb|CAR21909.1| KLTH0C02728p [Lachancea thermotolerans CBS 6340]
Length = 214
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 27/204 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK--ASLKSTPPSS--IMSLREKFDAHDSLLR-----R 110
LI+ EGLD GKS + + ++L + L P S I L ++ S L
Sbjct: 6 LILIEGLDRTGKSTQAGKLTERLGPDSQLIKFPDRSTKIGGLINQYLTDPSFLLPDQAIH 65
Query: 111 AYYSLGNYIAAQDIKQ-DLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
+S + A++IK L+ + VV+DR+ +S AY A V DL+ + D
Sbjct: 66 LLFSANRWEVAEEIKALLLEGRNVVLDRYVYSGVAYSAAKG-VPGMDLRWCLQSD----- 119
Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-NAKFRELLTTIYRNMNNPEL 228
L+KPDL ++LT Q R+ F E E K RE +T + + +P+
Sbjct: 120 -VGLLKPDLTLFLTN------QGSELRQGFGDERYENSAFQQKVREQFSTFFNDFEDPD- 171
Query: 229 VFVDNSEKSVHESSNDIVELIHNL 252
+ V E+S +E +H++
Sbjct: 172 --YSQAHIKVLETSGKSIEQVHDM 193
>gi|15897682|ref|NP_342287.1| thymidylate kinase (tmK-1) [Sulfolobus solfataricus P2]
gi|227830328|ref|YP_002832108.1| dTMP kinase [Sulfolobus islandicus L.S.2.15]
gi|229579145|ref|YP_002837543.1| dTMP kinase [Sulfolobus islandicus Y.G.57.14]
gi|229582100|ref|YP_002840499.1| dTMP kinase [Sulfolobus islandicus Y.N.15.51]
gi|284997753|ref|YP_003419520.1| dTMP kinase [Sulfolobus islandicus L.D.8.5]
gi|11133144|sp|Q9UXG7.1|KTHY1_SULSO RecName: Full=Probable thymidylate kinase 1; AltName: Full=dTMP
kinase 1
gi|6015696|emb|CAB57523.1| thymidylate kinase [Sulfolobus solfataricus P2]
gi|13813955|gb|AAK41077.1| Thymidylate kinase (tmK-1) [Sulfolobus solfataricus P2]
gi|227456776|gb|ACP35463.1| dTMP kinase [Sulfolobus islandicus L.S.2.15]
gi|228009859|gb|ACP45621.1| dTMP kinase [Sulfolobus islandicus Y.G.57.14]
gi|228012816|gb|ACP48577.1| dTMP kinase [Sulfolobus islandicus Y.N.15.51]
gi|284445648|gb|ADB87150.1| dTMP kinase [Sulfolobus islandicus L.D.8.5]
Length = 189
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 27/166 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK-----STPPSS--IMSLREKFDAHDSLLRRAY 112
LI EG+DG GK+ + + + L++ +K + P S I+ L EK +D +L
Sbjct: 4 LIAIEGIDGSGKTTLANLLKEHLESKMKLNVIVTREPFSEDIIKLIEKIGWNDPILLVLL 63
Query: 113 YSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAY----GMANELVKNSDLKLPDEDDDIYS 168
++ I + + +++DR++ S+ AY G+ + +K + P
Sbjct: 64 FAADREIHVNWLSKIKDADLIILDRYYFSSIAYQGALGVDEQWIKMVNSYFP-------- 115
Query: 169 WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214
KPD+VI L + + + R+ K F EE ++K AK RE
Sbjct: 116 ------KPDMVILLDLPIEVAISRIKNDK-FNFEE-KIKSLAKVRE 153
>gi|344230499|gb|EGV62384.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 216
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 98/204 (48%), Gaps = 23/204 (11%)
Query: 60 LIVFEGLDGCGKS------HTSQTVAKKLKASLKSTPPSSIMS---LREKFDAHDSLLRR 110
LI+ EGLD GKS HT+ + K +ST +I++ E F D +
Sbjct: 5 LILIEGLDRSGKSTQVERLHTAIPNSSTQKFPDRSTRIGAIINQYLTDESFVLPDQSIH- 63
Query: 111 AYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
+S + + + LQ V++DR+ +S AY +A +SD ++ + +YS
Sbjct: 64 LLFSANRWELIDSMSRALQSGTTVILDRYIYSGIAYSLAKSHFNHSDNQMASVEW-LYSP 122
Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPE-- 227
K L+KPDL ++LT++ + + R +F E E + F+E++ + + +P+
Sbjct: 123 DKGLLKPDLTLFLTLN----MDEIDTRADFGDERYEKR---AFQEVVKDNFLRLLDPKVD 175
Query: 228 --LVFVDNSEKSVHESSNDIVELI 249
+ F+D + +S+ E I +++
Sbjct: 176 SSIHFIDVNRQSIDEVGRTIWDVV 199
>gi|225018256|ref|ZP_03707448.1| hypothetical protein CLOSTMETH_02194 [Clostridium methylpentosum
DSM 5476]
gi|224948953|gb|EEG30162.1| hypothetical protein CLOSTMETH_02194 [Clostridium methylpentosum
DSM 5476]
Length = 205
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 92/214 (42%), Gaps = 34/214 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPS---SIMSLREKFDAHDS------ 106
IVFEGLDG GK + + ++ K A ++ P+ + ++R+ + +
Sbjct: 4 FIVFEGLDGSGKGTQIRLLCEEFKRRGEAFQQTAEPTFSVTGGAIRDALNGNHPRHPAEL 63
Query: 107 ----LLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAY---GMANELVKNSDLKL 159
L R Y++ G + + + Q + V+ DR+++S+ AY G + V +L
Sbjct: 64 AALFLTDRIYHNTGKFDGIELLLS--QGKHVICDRYYYSSFAYQGTGCDMQWVMEMNLNC 121
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL-SRRKNFTLEENELKKNAKFRELLTT 218
P ++ KPDL IYL V R+ K+ + E ++ + R
Sbjct: 122 P-----------NIRKPDLCIYLDVDPQRSKARVDGANKSLEIFEQDIAQITAIRNKFMK 170
Query: 219 IYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
+ + E + + ++++ V E + D+ + + +
Sbjct: 171 AFELLGERETIVLIDADRPVDEVAADVWDAVKRI 204
>gi|227827632|ref|YP_002829412.1| dTMP kinase [Sulfolobus islandicus M.14.25]
gi|229584836|ref|YP_002843338.1| dTMP kinase [Sulfolobus islandicus M.16.27]
gi|238619800|ref|YP_002914626.1| dTMP kinase [Sulfolobus islandicus M.16.4]
gi|385773302|ref|YP_005645868.1| dTMP kinase [Sulfolobus islandicus HVE10/4]
gi|385775934|ref|YP_005648502.1| dTMP kinase [Sulfolobus islandicus REY15A]
gi|227459428|gb|ACP38114.1| dTMP kinase [Sulfolobus islandicus M.14.25]
gi|228019886|gb|ACP55293.1| dTMP kinase [Sulfolobus islandicus M.16.27]
gi|238380870|gb|ACR41958.1| dTMP kinase [Sulfolobus islandicus M.16.4]
gi|323474682|gb|ADX85288.1| dTMP kinase [Sulfolobus islandicus REY15A]
gi|323477416|gb|ADX82654.1| dTMP kinase [Sulfolobus islandicus HVE10/4]
Length = 189
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 27/166 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK-----STPPSS--IMSLREKFDAHDSLLRRAY 112
LI EG+DG GK+ + + + L++ +K + P S I+ L EK +D +L
Sbjct: 4 LIAIEGIDGSGKTTLANLLKEHLESKMKLNVIVTREPFSEDIIKLIEKIGWNDPILLVLL 63
Query: 113 YSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAY----GMANELVKNSDLKLPDEDDDIYS 168
++ I + + +++DR++ S+ AY G+ + +K + P
Sbjct: 64 FAADREIHVNWLSKIKDADLIILDRYYFSSIAYQGALGVDEQWIKMVNSYFP-------- 115
Query: 169 WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214
KPD+VI L + + + R+ K F EE ++K AK RE
Sbjct: 116 ------KPDMVILLDLPIEVAISRIKNDK-FNFEE-KIKSLAKVRE 153
>gi|167042320|gb|ABZ07049.1| putative Thymidylate kinase [uncultured marine crenarchaeote
HF4000_ANIW97J3]
Length = 292
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 30/177 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAK-----KLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYS 114
+I EGLD GK ++ + K K+K ++ S P S + +E H S R
Sbjct: 102 IIAIEGLDQAGKKTQTEMLVKALRRIKIKTAVFSFPDYSTIIGKE-IKNHLSGKRNFPPE 160
Query: 115 LGNYIAA-------QDIKQDLQKQPV-VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDI 166
+ +Y+ A ++I++ K V VM+R++HS YG+AN L + KL +
Sbjct: 161 IIHYLYAANRLEKLEEIQKASSKNSVLVMNRYYHSNLVYGIANGLKEKWLQKLEE----- 215
Query: 167 YSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM 223
L K DLVI L S+ SR+K+ + + +KN F + ++ IYR +
Sbjct: 216 -----GLPKADLVIVLDASQD---DSFSRKKS---KRDRFEKNKNFSKKISRIYRRL 261
>gi|227529519|ref|ZP_03959568.1| dTMP kinase [Lactobacillus vaginalis ATCC 49540]
gi|227350604|gb|EEJ40895.1| dTMP kinase [Lactobacillus vaginalis ATCC 49540]
Length = 213
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 33/213 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDS-LLRRAYYSLGN- 117
I FEG DG GK+ + +L+ L +M RE H S +RR + N
Sbjct: 5 FISFEGPDGAGKTSVITAIQAELEQQLGK---EKVMYTREPGGNHISEQVRRVLFDEHNT 61
Query: 118 ----------YIAAQ------DIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLP 160
+ AA+ +I L+ V++ DR+ S+ AY +A + +
Sbjct: 62 DMDGRTEALLFAAARRQHIVSEILPALKDGKVILCDRYVDSSIAYQVAGRHLGEQKIW-- 119
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN---FTLEENELKKNAKFRELLT 217
I + D + PDL IYL + + LQR++ + L+E +L + RE
Sbjct: 120 ----QINQYAIDGLLPDLTIYLDIESKLGLQRIAEHRADQVNRLDEEQLSFHKTVREAFL 175
Query: 218 TIYRNMNNPELVFVDNSEKSVHESSNDIVELIH 250
+ R NPE + + ++ +S+ + +D+ + IH
Sbjct: 176 RLQR--ENPERIKLIDASQSLPKVISDVKQTIH 206
>gi|75908183|ref|YP_322479.1| thymidylate kinase [Anabaena variabilis ATCC 29413]
gi|123609755|sp|Q3MBQ2.1|KTHY_ANAVT RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|75701908|gb|ABA21584.1| thymidylate kinase [Anabaena variabilis ATCC 29413]
Length = 211
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 99/211 (46%), Gaps = 36/211 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK-----ASLKSTPPSSIMSLREKFDAHDSLLRRA--- 111
IVFEG++GCGK+ Q A+ L+ L P + + + D LL++A
Sbjct: 5 FIVFEGVEGCGKTSQMQLCAEWLQNLGISVILTREPGGTELGV----DLRRLLLQKAEDK 60
Query: 112 ----YYSLGNYIA--AQDIKQDL-----QKQPVVMDRFWHSTSAYGMANELVKNSDLKLP 160
L Y A AQ + Q+L Q + ++ DR+ ST AY +N D+ L
Sbjct: 61 PIAEVTELLLYAADRAQHVAQELKPKLAQGKYILCDRYVDSTIAY---QGYGRNLDMNLI 117
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY 220
+ +DI + + D+ I+L V + L R R +N L+ E ++ F + Y
Sbjct: 118 HQLNDIATGG---LTSDITIWLDVDVEVGLAR-KRGENVGLDRIE-QETIAFHRRVQQGY 172
Query: 221 RNM--NNP-ELVFVDN--SEKSVHESSNDIV 246
N+ ++P ++ VD S+++VH++ +I+
Sbjct: 173 ANLAASSPSRIIRVDGQLSKETVHKTIQEIL 203
>gi|254168531|ref|ZP_04875375.1| thymidylate kinase [Aciduliprofundum boonei T469]
gi|197622586|gb|EDY35157.1| thymidylate kinase [Aciduliprofundum boonei T469]
Length = 197
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 32/207 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMS--LREKFDAHDSLLRRAY 112
IVFEG+DG GKS ++ +A+ L K L P ++ M +R + + L +A
Sbjct: 2 FIVFEGIDGSGKSTIAKRIAEHLSSLGHKIFLTEEPTTTWMGKDVRRAIEEEKNPLSQAL 61
Query: 113 YSLGNYIA-AQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
+ + IK++L+ +V+ DR+ +ST AY A ++ K L D W
Sbjct: 62 LFFADRAEHVEAIKKNLEDGKIVISDRYVYSTFAYQGA-QMEKLMPL------DKALKWL 114
Query: 171 KDL-----MKPDLVIYLTVSEAIRLQRLSRR---KNFTLEENELKKNAKFRELLTTIYRN 222
+ + + PD+VI L + L ++ R + F EE F E + IY
Sbjct: 115 EGVYEPMRLDPDMVILLKIEPRRGLDFVNTRDFKEKFEREE--------FLERVQDIYMA 166
Query: 223 MNNPELVFVDNSEKSVHESSNDIVELI 249
+ + FV +S ++++E +D+ ++I
Sbjct: 167 LADKYGFFVVDSNRNLNEVYDDVRKII 193
>gi|197294763|ref|YP_001799304.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
gi|171854090|emb|CAM12069.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
Length = 215
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 98/223 (43%), Gaps = 39/223 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP---------PSSIMS--LREKFDAHDSLL 108
LI FEG+DG GK+ T+ +LKA ++ SSI+ +R F +
Sbjct: 5 LISFEGIDGSGKT----TLINELKAFFENKGYKTKVFQGLGSSIVGKEIRNLFLHQSKIS 60
Query: 109 RRAYY--SLGNYIAAQD---IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
+ Y SL N + QD I L V++DR++ ST AY + D D
Sbjct: 61 PKTKYLLSLANMLQTQDELIIPALLSGCLVLVDRWYDSTFAYQSKGNYI--------DYD 112
Query: 164 DDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELK-----KNAKFRELL 216
D I S + L+KP L YL + I L+R + N L+ E K KN + L
Sbjct: 113 DKITSKIINHFLIKPKLTFYLDIEPKIGLKRKQTQSNHKLDLIEKKPLNYFKNVRAHYLN 172
Query: 217 TTIYRNMNNPELV----FVDNSEKSVHESSNDIVELIHNLPMF 255
Y N +N + F+ N+ S E+ + I++++ N +F
Sbjct: 173 QQKYCNDSNCKHQNCHHFLINATNSQKENLDQIMKILINKQIF 215
>gi|197294219|ref|YP_001798760.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
gi|197294324|ref|YP_001798865.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
gi|197294822|ref|YP_001799363.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
gi|171853546|emb|CAM11406.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
gi|171853651|emb|CAM11530.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
gi|171854149|emb|CAM12141.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
Length = 215
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 99/223 (44%), Gaps = 39/223 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP---------PSSIMS--LREKFDAHDSLL 108
LI FEG+DG GK+ T+ +LKA ++ SSI+ +R F +
Sbjct: 5 LISFEGIDGSGKT----TLINELKAFFENKGYKTKVFQGLGSSIVGKEIRNLFLHQSKIS 60
Query: 109 RRAYY--SLGNYIAAQD---IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
+ Y SL N + +QD I L V++DR++ ST AY + D D
Sbjct: 61 PKTKYLLSLANMMQSQDELIIPALLSGCLVLVDRWYDSTFAYQSKGNYI--------DYD 112
Query: 164 DDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELK-----KNAKFRELL 216
D I S + L+KP L YL + I L+R + N L+ E K KN + L
Sbjct: 113 DKITSKIINHFLIKPKLTFYLDIDPKIGLKRKQTQSNHKLDLIEKKPLNYFKNVRAHYLN 172
Query: 217 TTIYRNMNNPELV----FVDNSEKSVHESSNDIVELIHNLPMF 255
Y N +N + F+ N+ S E+ + I++++ N +F
Sbjct: 173 QQKYCNDSNCKHQNCHHFLINATNSQKENLDQIMKILINKQIF 215
>gi|258654373|ref|YP_003203529.1| thymidylate kinase [Nakamurella multipartita DSM 44233]
gi|258557598|gb|ACV80540.1| thymidylate kinase [Nakamurella multipartita DSM 44233]
Length = 213
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 67/164 (40%), Gaps = 34/164 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYY------ 113
LIV EGLDG GK +Q +A + +A ++ +++ R D H L++ A Y
Sbjct: 4 LIVIEGLDGSGKRTLTQALAARWQADGRTV--ATLAFPRYGLDVHADLVQDALYGRLGDL 61
Query: 114 -----------SLGNYIAAQDIKQDLQKQPV-VMDRFWHSTSAYGMANELVKNSDLKLPD 161
+L AA I+ Q V ++DR+ S +AYG A L PD
Sbjct: 62 SDSIYGPAVLFALDRRAAAGQIRDLRQAHDVLLLDRYVTSNAAYGSAR-------LGGPD 114
Query: 162 EDDDIYSWPKDLM-------KPDLVIYLTVSEAIRLQRLSRRKN 198
D +W + L PD I L S + QR R +
Sbjct: 115 RPTDFPAWVRALEIDRFGVPAPDHQILLATSVELAGQRARNRAD 158
>gi|197294491|ref|YP_001799032.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
gi|171853818|emb|CAM11759.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
Length = 215
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 98/223 (43%), Gaps = 39/223 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP---------PSSIMS--LREKF--DAHDS 106
LI FEG+DG GK+ T+ +LKA ++ SSI+ +R F + S
Sbjct: 5 LISFEGIDGSGKT----TLINELKAFFENKGYKTKVFQGLGSSIVGKEIRNLFLHQSKIS 60
Query: 107 LLRRAYYSLGNYIAAQD---IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
L + SL N + QD L V++DR++ ST AY + D D
Sbjct: 61 LKTKYLLSLANMLQTQDELIFPALLSGYLVLVDRWYGSTFAYQSKGNYI--------DYD 112
Query: 164 DDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELK-----KNAKFRELL 216
D I S + L+KP L YL + I +QR + N L+ E K KN + L
Sbjct: 113 DKITSKIINHFLIKPKLTFYLDIDPKIGIQRKQNQTNHKLDLIERKPLNYFKNVRAHYLN 172
Query: 217 TTIYRNMNNPELV----FVDNSEKSVHESSNDIVELIHNLPMF 255
Y N +N + F+ N+ S E+ + I++++ N +F
Sbjct: 173 QQKYCNDSNCKHQNCHHFLINATNSQKENLDQIMKILINKQIF 215
>gi|448117757|ref|XP_004203334.1| Piso0_000941 [Millerozyma farinosa CBS 7064]
gi|359384202|emb|CCE78906.1| Piso0_000941 [Millerozyma farinosa CBS 7064]
Length = 199
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 35/181 (19%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL 115
R +P I+ G GCGKS + ++ +LK K P S I R+ D++D +L +
Sbjct: 4 RYHPNIIITGTPGCGKSSHATSLVSQLKDPFKHFPISDISKERKCIDSYDEVLDTSVVDE 63
Query: 116 GNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK 175
+ + ++ DL+ ++D WH + P+ L+
Sbjct: 64 DKLLDS--LEPDLENGGAIID--WHCCEVF------------------------PERLI- 94
Query: 176 PDLVIYLTVSEAIRLQRLSRR--KNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDN 233
DLV+ L QRL R KN ++EN + + E++ R+ P +V N
Sbjct: 95 -DLVVVLRTENKKLYQRLVSRGYKNNKIQEN---LDCEIMEIIAQEARDSYEPNIVVELN 150
Query: 234 S 234
S
Sbjct: 151 S 151
>gi|197294352|ref|YP_001798893.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
gi|197294409|ref|YP_001798950.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
gi|171853679|emb|CAM11562.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
gi|171853736|emb|CAM11659.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
Length = 215
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 98/223 (43%), Gaps = 39/223 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP---------PSSIMS--LREKFDAHDSLL 108
LI FEG+DG GK+ T+ +LKA ++ SSI+ +R F +
Sbjct: 5 LISFEGIDGSGKT----TLINELKAFFENKGYKTKVFQGLGSSIVGKEIRNLFLHQSKIS 60
Query: 109 RRAYY--SLGNYIAAQD---IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
+ Y SL N + QD I L V++DR++ ST AY + D D
Sbjct: 61 PKTKYLLSLANMLQTQDELIIPALLSGCLVLVDRWYDSTFAYQSKGNYI--------DYD 112
Query: 164 DDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELK-----KNAKFRELL 216
D I S + L+KP L YL + I L+R + N L+ E K KN + L
Sbjct: 113 DKITSKIINHFLIKPKLTFYLDIDPKIGLKRKQTQSNHKLDLIEKKPLNYFKNVRAHYLN 172
Query: 217 TTIYRNMNNPELV----FVDNSEKSVHESSNDIVELIHNLPMF 255
Y N +N + F+ N+ S E+ + I++++ N +F
Sbjct: 173 QQKYCNDSNCKHQNCHHFLINATNSQKENLDQIMKILINKQIF 215
>gi|197294197|ref|YP_001798738.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
gi|171853524|emb|CAM11374.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
Length = 215
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 99/223 (44%), Gaps = 39/223 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP---------PSSIMS--LREKFDAHDSLL 108
LI FEG+DG GK+ T+ +LKA ++ SSI+ +R F +
Sbjct: 5 LISFEGIDGSGKT----TLINELKAFFENKGYKTKVFQGLGSSIVGKEIRNLFLHQSKIS 60
Query: 109 RRAYY--SLGNYIAAQD---IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
+ Y SL N + +QD I L V++DR++ ST AY + D D
Sbjct: 61 PKTKYLLSLANMMQSQDELIIPALLSGCLVLVDRWYDSTFAYQSKGNYI--------DYD 112
Query: 164 DDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELK-----KNAKFRELL 216
D I S + L+KP L YL + I L+R + N L+ E K KN + L
Sbjct: 113 DKITSKIINYFLIKPKLTFYLDIDPKIGLKRKQTQSNHKLDLIEKKPLNYFKNVRAHYLN 172
Query: 217 TTIYRNMNNPELV----FVDNSEKSVHESSNDIVELIHNLPMF 255
Y N +N + F+ N+ S E+ + I++++ N +F
Sbjct: 173 QQKYCNDSNCKHQNCHHFLINATNSQKENLDQIMKILINKQIF 215
>gi|169776481|ref|XP_001822707.1| thymidylate kinase [Aspergillus oryzae RIB40]
gi|83771442|dbj|BAE61574.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 225
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 31/202 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP----PSSIMSLREKFDAH-------DSLL 108
LIV EGLD GKS + + L+ S S P ++ + D++ D
Sbjct: 14 LIVVEGLDRAGKSSQCENLRDYLQESGHSVKYVRFPDRTTAIGKLIDSYLRGQSQLDDHS 73
Query: 109 RRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
+S + A+ I++D+ K V++DR+ +S + Y A + L L +
Sbjct: 74 IHLLFSANRWEIAKVIEEDIAKGITVIVDRYSYSGAVYSAAKGI---PTLSLG------W 124
Query: 168 SWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFRELLTTIYRNM 223
+W + L +PD+ ++L +S ++R F +E ENE + ++ REL T++
Sbjct: 125 AWQPEVGLPRPDMCLFLRISPT----EAAKRGGFGVERYENETMQ-SRVRELFQTLFDLQ 179
Query: 224 NNPELVFVDNSEKSVHESSNDI 245
N + + V N+ +S E S +I
Sbjct: 180 PNGD-IHVVNAGRSFQEVSEEI 200
>gi|386875405|ref|ZP_10117579.1| dTMP kinase [Candidatus Nitrosopumilus salaria BD31]
gi|386806804|gb|EIJ66249.1| dTMP kinase [Candidatus Nitrosopumilus salaria BD31]
Length = 193
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 89/212 (41%), Gaps = 50/212 (23%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA-SLKS---------TPPSSIMSLREKFDA------ 103
+IV EG D GK S + K LK +K+ TP +R+ D
Sbjct: 2 IIVIEGGDQAGKLTQSTMLEKSLKKRKIKTKLFHFPDYKTPIGK--EIRQYLDGNRKFPP 59
Query: 104 ---HDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANEL----VKNSD 156
H L + L +AAQD + ++M+R++HS YG+AN + ++N D
Sbjct: 60 QVIHCLLSANRWEKLDEILAAQD-----KNSVLIMNRYYHSNLIYGIANGMKQSWLENLD 114
Query: 157 LKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL 216
LP K DLVI L V++ QR + ++ +KN +F +
Sbjct: 115 AGLP--------------KADLVILLDVTQKESFQRQKTNR------DKFEKNEEFLRKI 154
Query: 217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVEL 248
+ IYR + + ++ KS E +I+++
Sbjct: 155 SKIYRATAKKKHWKIIDASKSKEEVHEEIMKI 186
>gi|284175009|ref|ZP_06388978.1| dTMP kinase [Sulfolobus solfataricus 98/2]
gi|384434298|ref|YP_005643656.1| thymidylate kinase [Sulfolobus solfataricus 98/2]
gi|261602452|gb|ACX92055.1| thymidylate kinase [Sulfolobus solfataricus 98/2]
Length = 189
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 27/166 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK-----STPPSS--IMSLREKFDAHDSLLRRAY 112
LI EG+DG GK+ + + + L++ +K + P S I+ L EK +D +L
Sbjct: 4 LIAIEGIDGSGKTTLANLLKEYLESKMKLNVIVTREPFSEDIIKLIEKIGWNDPILLVLL 63
Query: 113 YSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAY----GMANELVKNSDLKLPDEDDDIYS 168
++ + + + +++DR++ S+ AY G+ + +K + P
Sbjct: 64 FAADRALHVNWLSKIRNADLIILDRYYFSSIAYQGALGVDEKWIKTVNSYFP-------- 115
Query: 169 WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214
KPD+VI L + + + R+ K F EE ++K AK RE
Sbjct: 116 ------KPDMVILLDLPIEVAISRIKNDK-FNFEE-KIKSLAKVRE 153
>gi|119183198|ref|XP_001242660.1| hypothetical protein CIMG_06556 [Coccidioides immitis RS]
gi|392865564|gb|EAS31362.2| thymidylate kinase [Coccidioides immitis RS]
Length = 228
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 32/209 (15%)
Query: 55 DRKYP---LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP----PSSIMSLREKFDAH--- 104
DRK LIV EGLD GKS + KL+ T P S+ + D +
Sbjct: 11 DRKMARGALIVIEGLDRAGKSTQCAILVDKLREKGHETKYIRFPDRTTSIGKIIDGYLRG 70
Query: 105 ----DSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKL 159
D +S + A I+QD+ +V+DR+ +S + Y A N +L L
Sbjct: 71 ETQLDDHAIHLLFSANRWELASQIRQDISNGISIVIDRYSYSGAVYSAAK---NNRELSL 127
Query: 160 PDEDDDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKKNAKFRELL 216
++W + L +PDL +L +S + R + LE E + + EL
Sbjct: 128 E------WAWQPEIGLPRPDLWFFLNISP----EEAESRGGYGLERYENVTLQLRVGELF 177
Query: 217 TTIYRNMNNPELVFVDNSEKSVHESSNDI 245
++ NN E+ +D + +S + + DI
Sbjct: 178 KSMQGMENNEEMRIID-ANQSKEQVARDI 205
>gi|359780183|ref|ZP_09283409.1| hypothetical protein PPL19_03945 [Pseudomonas psychrotolerans L19]
gi|359371495|gb|EHK72060.1| hypothetical protein PPL19_03945 [Pseudomonas psychrotolerans L19]
Length = 191
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKK-LKASLKSTPPSSIMSLREKFDAHDSLLRRA----YYS 114
LIV GLDGCG S ++ + K L TP RE FD+ ++ +Y
Sbjct: 5 LIVITGLDGCGTSSLAEQLCKHDPHGMLFKTPDGPFGETRELFDSEVRECSQSAHYLFYL 64
Query: 115 LGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLM 174
A++ IK+ L+ V R+ T + + V ++ L + D+
Sbjct: 65 ASVAYASERIKKHLKTHNVYCVRYLIDT----VVSHRVAGMNVDLAYQ-----GMGYDIH 115
Query: 175 KPDLVIYLTVSEAIRLQRLSRRKNFTLEE 203
KPD +++ + E++R R+S R L++
Sbjct: 116 KPDATLFINIDESVRQDRISLRGKSDLDK 144
>gi|33563101|dbj|BAA31455.1| Thimidylate Kinase [Phytoplasma sp.]
Length = 209
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 66/148 (44%), Gaps = 14/148 (9%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK-------STPPSSIMSLREKFDAHDSLLRRAY 112
LIVFEGLDG GK+ T+ +LK + S+ I L F D L R Y
Sbjct: 4 LIVFEGLDGSGKTSLIHTLQPQLKTPHQLYQGLGSSSIGKEIRDLFLNFQQVD-YLTRFY 62
Query: 113 YSLGNY--IAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
SL N I A+ K + Q +++DR+ S AY + K P + +
Sbjct: 63 LSLANMAQIQAELFKNN---QLIILDRWLPSAYAYQLF-PFSKEKKQLPPLKKIFKLNHE 118
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKN 198
L KPDL+IYL + I R ++KN
Sbjct: 119 TILKKPDLLIYLDIDPLIGRTRKKKQKN 146
>gi|348690421|gb|EGZ30235.1| hypothetical protein PHYSODRAFT_263927 [Phytophthora sojae]
Length = 214
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 43/189 (22%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS-------------SIMSLREKFD 102
R+ ++FEG+D CGK+ ++ + + L AS + P + SI S +
Sbjct: 3 RRGIFVLFEGVDRCGKTTQTKLLHEALNASSPAQPSALLHFPDRSTAIGQSIHSYLTSSE 62
Query: 103 AHDSLLRRAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAY-----GMANELVKNSD 156
A D +S + AA I+ L Q ++MDR+ S A+ GM+ + +
Sbjct: 63 AMDDHAIHLLFSANRWEAASKIESLLASGQHIIMDRYSFSGVAFSAAKSGMSLDWCWAPE 122
Query: 157 LKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL 216
+ LP KPD VI+L V + + S R +F E E F+E
Sbjct: 123 IGLP--------------KPDAVIFLDVP----VTQASTRADFGQERYE---TTAFQE-- 159
Query: 217 TTIYRNMNN 225
+Y+N ++
Sbjct: 160 -KVYQNFHD 167
>gi|418577137|ref|ZP_13141264.1| thymidylate kinase [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|379324417|gb|EHY91568.1| thymidylate kinase [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 205
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 37/212 (17%)
Query: 59 PLIVFEGLDGCGKSHTSQTVAKKLK---ASLKSTPPSSIMS---LREKF-------DAHD 105
I FEG +G GK+ Q VA+KL+ + + + P + + +RE D +
Sbjct: 3 AFITFEGPEGSGKTTVIQQVAQKLENQYSVVLTREPGGVKTGEQIREVLLEGDDMDDRTE 62
Query: 106 SLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAY-----GMANELVKNSDLKLP 160
+LL A S ++ + I + V+ DR+ S+ AY G+ E VK+
Sbjct: 63 ALLFAA--SRREHLVGKVIPSLENGKLVLCDRYIDSSLAYQGYARGIGIEEVKS------ 114
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL-KKNAKFRELLTTI 219
I + + + PD+ IYL VS A+ +R+ + + +N L +++ KF E +
Sbjct: 115 -----INEFAINGLYPDITIYLDVSVAVGRERILKNQR---NQNRLDQEDVKFHEKVVEG 166
Query: 220 YRNM--NNPELVFVDNSEKSVHESSNDIVELI 249
Y+ + N E V ++++S+ E N E I
Sbjct: 167 YKKIIHNESERFIVIDADRSIDEVVNATYESI 198
>gi|409100229|ref|ZP_11220253.1| thymidylate kinase [Pedobacter agri PB92]
Length = 207
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 35/218 (16%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKA---SLKST---PPSSIMSL-REKFDAHDSLL 108
+K I FEG+DG GKS + + +KL + ST S I SL R F+
Sbjct: 2 KKNLFIAFEGIDGSGKSTQVKLLKEKLSKDGHKIYSTFEPTDSPIGSLIRNIFNRRIETD 61
Query: 109 RRAYYSLGNYIA---------AQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLK 158
RA SL ++A I + +Q+ V+ DR++ S+ AY A +
Sbjct: 62 ERAIASL--FVADRLDHLLNKTNGIVKKMQEGYTVITDRYYFSSYAYHSAT-------IS 112
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL-SRRKNFTLEEN--ELK-KNAKFRE 214
L D + S +++KPDL IY+ + I ++RL S R N + EN LK + K++E
Sbjct: 113 L-DWLIEANSLSANILKPDLNIYIDIDPEISIERLNSERSNIEIYENIENLKIVSKKYKE 171
Query: 215 LLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
+ E VF+ + S+++ SN I + + ++
Sbjct: 172 AFV----RLGAVENVFLIDGNNSINDLSNKIFDKVQSM 205
>gi|294056288|ref|YP_003549946.1| thymidylate kinase [Coraliomargarita akajimensis DSM 45221]
gi|293615621|gb|ADE55776.1| thymidylate kinase [Coraliomargarita akajimensis DSM 45221]
Length = 209
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 23/162 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL---------KSTPPS-SIMSLREKFDAHDSLLR 109
I FEG +GCGKS + +A +L+A TP S +I +L + +A + +
Sbjct: 5 FISFEGSEGCGKSTQIRALASRLEAEGIDVVRTREPGGTPLSEAIRNLLQHDEAGEGMCA 64
Query: 110 RAYYSLGNYIAAQDIKQDL-----QKQPVVMDRFWHSTSAY-GMANELVKNSDLKLPDED 163
A L AQ ++ + + V+ DRF ST+ Y G+A L D+
Sbjct: 65 EAELLLFAAARAQLTREVIAPARRAGKAVLSDRFMDSTTVYQGVARALAH-------DDV 117
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE 205
I + KPDL I + + + LQR+ R L+ E
Sbjct: 118 AAINQFAVGTHKPDLTILIDLDPEVGLQRVKARSGGQLDRME 159
>gi|150400777|ref|YP_001324543.1| thymidylate kinase [Methanococcus aeolicus Nankai-3]
gi|166221752|sp|A6UTV9.1|KTHY_META3 RecName: Full=Probable thymidylate kinase; AltName: Full=dTMP
kinase
gi|150013480|gb|ABR55931.1| dTMP kinase [Methanococcus aeolicus Nankai-3]
Length = 196
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 90/199 (45%), Gaps = 26/199 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS-IMSLREKFDAHDSLLRRAYYSL--G 116
IVFEG+DG GK+ ++ +A L P + I L K + + + L G
Sbjct: 4 FIVFEGIDGSGKTTQAKLLADYLNGIYTCEPTNGEIGQLIRKVLGGKNCEKESLALLFAG 63
Query: 117 NYIA-AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK 175
+ + ++I+ L + V+ DR+ +S+ Y + ++ D+ D I S +
Sbjct: 64 DRVEHIKEIEHKLIENMVICDRYVYSSMVY----QSIQGIDI------DFIASINRFAKI 113
Query: 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPEL------- 228
PD++IYL VS L+R+ R + E+ +N + + + Y N+ N L
Sbjct: 114 PDVLIYLDVSIEESLKRMGDR-----DSKEIFENKEILQKVNKKYMNIINERLFEPKNGY 168
Query: 229 VFVDNSEKSVHESSNDIVE 247
+ ++ K+V E +I++
Sbjct: 169 ILINTDNKTVEEVHKEIIK 187
>gi|33563152|dbj|BAC81723.1| pseudo thymidylate kinase [Onion yellows phytoplasma]
Length = 174
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 22/152 (14%)
Query: 60 LIVFEGLDGCGKS---HTSQTVAKKLKASLKSTPPSSI-MSLREKFDAHDSL--LRRAYY 113
LIVFEGLDG GK+ H Q + K + SS+ +R+ F + L R Y
Sbjct: 3 LIVFEGLDGSGKTSLIHALQPLLKTPHQLYQGLGSSSLGKEIRDLFLNFQQVDYLTRFYL 62
Query: 114 SLGNY--IAAQDIKQDLQKQPVVMDRFWHSTSAYGM---ANELVKNSDLKLPDEDDDIYS 168
SL N I A+ K + Q +++DR+ ST AY + + E + S LK I+
Sbjct: 63 SLVNMAQIQAELFKNN---QLIILDRWLPSTYAYQLFPFSKEKKQLSPLK------KIFK 113
Query: 169 WPKD--LMKPDLVIYLTVSEAIRLQRLSRRKN 198
+ L KPDL+IYL + I R ++KN
Sbjct: 114 LNHETILKKPDLLIYLDIDPLIGRTRKKKQKN 145
>gi|395528688|ref|XP_003766459.1| PREDICTED: thymidylate kinase isoform 1 [Sarcophilus harrisii]
Length = 212
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 39/221 (17%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKL-----KASL-----KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS + + L +A L +ST ++S L +K +
Sbjct: 4 RRGALIVLEGMDRAGKSTQCRKLVTTLLESGHRAELLRFPERSTEIGKLLSAYLEKKSNM 63
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
D + +S + IK+ L Q +V+DR+ S A+ A E + K PD
Sbjct: 64 EDHTV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTSAKENFSLNWCKQPD- 121
Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE-LLTTIYR 221
L KPDL+++L +S Q ++R +F E E N F+E L Y+
Sbjct: 122 --------VGLPKPDLILFLQLSS----QEAAKRGDFGTERYE---NNAFQEKALQCFYQ 166
Query: 222 NMNNPELVF--------VDNSEKSVHESSNDIVELIHNLPM 254
M + L + +++ K ++ + + ++++ PM
Sbjct: 167 LMKDDSLNWKTINASQSIEDLHKEIYSLAEETIQMVQETPM 207
>gi|440632592|gb|ELR02511.1| thymidylate kinase [Geomyces destructans 20631-21]
Length = 229
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 98/221 (44%), Gaps = 47/221 (21%)
Query: 59 PLIVFEGLDGCGKSHTSQT-------VAKKLKASLKSTPPSSIM-------SLREKFDAH 104
P IV EGLD GK T+QT V + K L+ P + + L+ K D
Sbjct: 11 PFIVVEGLDRSGK--TTQTKRIEAALVGEGYKVKLRRFPDRTTVIGEMINNYLQSKSDLE 68
Query: 105 DSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
D ++ +S + A+ I++D+ V+ DR+++S Y A N L LP
Sbjct: 69 DHVI-HLLFSANRWELAKQIEKDIADGYTVICDRYYYSGVVYSAAK---SNPQLSLP--- 121
Query: 164 DDIYSWPKD----LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTI 219
W ++ L +PDLVI+L + + R + E+ E + + +E + +
Sbjct: 122 -----WAREPEVGLPRPDLVIFLDLEPEV----AEERGGYGDEKYEKR---EMQEKVRKL 169
Query: 220 YRNMNNPE------LVFVDNSEKSVHESSNDIVELIHNLPM 254
+ +N+ E +V D KS+ E + D+++ + ++ +
Sbjct: 170 FHALNDSEEEEASDMVIYDAG-KSLEEVTKDVLQSVSSVSL 209
>gi|238503185|ref|XP_002382826.1| thymidylate kinase [Aspergillus flavus NRRL3357]
gi|220691636|gb|EED47984.1| thymidylate kinase [Aspergillus flavus NRRL3357]
Length = 225
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 31/202 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP----PSSIMSLREKFDAH-------DSLL 108
LIV EGLD GKS + + L+ S S P ++ + D++ D
Sbjct: 14 LIVVEGLDRAGKSSQCENLRDYLQESGHSVKYVRFPDRTTAIGKLIDSYLRGQSQLDDHS 73
Query: 109 RRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
+S + A+ I++D+ K V++DR+ +S + Y A + L L +
Sbjct: 74 IHLLFSANRWEIAKVIEEDIAKGITVIVDRYSYSGAVYSAAKGI---PTLSLG------W 124
Query: 168 SWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFRELLTTIYRNM 223
+W + L +PD+ ++L +S ++R F +E ENE + ++ REL T++
Sbjct: 125 AWQPEVGLPRPDMCLFLRISPT----EAAKRGGFGVERYENETMQ-SRVRELFQTLFDLQ 179
Query: 224 NNPELVFVDNSEKSVHESSNDI 245
N + + V N+ +S E S +I
Sbjct: 180 PNGD-IHVVNAGRSFKEVSEEI 200
>gi|110003916|emb|CAK98256.1| thymidylate kinase protein [Spiroplasma citri]
Length = 215
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 33/202 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGN-- 117
I EG+DG GK+ T++K LK L+S +++ + +R S N
Sbjct: 4 FITLEGIDGSGKT----TISKLLKEKLRSEGYQVVLTREPGGNEIAEQIRNVILSKHNLG 59
Query: 118 ---------YIAA--QDIKQDL-----QKQPVVMDRFWHSTSAY-GMANELVKNSDLKLP 160
YIAA Q + +D+ + + V+ DRF STSAY G A L +
Sbjct: 60 MDPWTEALLYIAARRQHVVEDILPALKRGEIVICDRFMDSTSAYQGYARGLGIWTL---- 115
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY 220
D++ S KPDL ++ + + +R+ R + +L+KN+ F + + Y
Sbjct: 116 ---DEVQSIVLGTTKPDLTLFFDIEPTMASERMKVRNEVEMNRLDLEKNS-FHKKVYEGY 171
Query: 221 RNM--NNPELVFVDNSEKSVHE 240
+ + N E + V ++ K V+E
Sbjct: 172 QVLISENAERIKVIDASKPVNE 193
>gi|16975313|pdb|1E9C|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And
Appnp
gi|16975314|pdb|1E9D|A Chain A, Mutant Human Thymidylate Kinase (F105y) Complexed With
Aztmp And Adp
gi|16975315|pdb|1E9E|A Chain A, Mutant Human Thymidylate Kinase (F105y) Complexed With
Dtmp And Adp
Length = 215
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 45/208 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + + L A+ +ST ++S L++K D
Sbjct: 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 66
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +V+DR+ S AY A E K D+
Sbjct: 67 EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAYTGAKENFSLDWCKQPDV 125
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
LP KPDLV++L ++L ++R F E E N F+E
Sbjct: 126 GLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NGAFQERAL 164
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
+ + N ++V S ++VHE
Sbjct: 165 RCFHQLMKDTTLNWKMVDASKSIEAVHE 192
>gi|410457411|ref|ZP_11311222.1| thymidylate kinase [Bacillus bataviensis LMG 21833]
gi|409925213|gb|EKN62435.1| thymidylate kinase [Bacillus bataviensis LMG 21833]
Length = 211
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 36/166 (21%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGN-- 117
I FEG DG GK+ VAK+ ++L + P I + E+ +RR GN
Sbjct: 6 FITFEGPDGAGKTTIINMVAKQFSSALITREPGGI-EIAEQ-------IRRVILDKGNTA 57
Query: 118 ---------YIAA------QDIKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSDLKLP 160
Y AA + +K L++ VV+ DRF S+ AY G A L + LK
Sbjct: 58 MDPRTEALLYAAARRQHLIEKVKPALEEGKVVLCDRFVDSSLAYQGYARGLGMDEVLK-- 115
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL 206
I + + + P+L IY + + L+R+ +KN E N L
Sbjct: 116 -----INQFAIEDLMPELTIYFDIDPELGLKRI--KKNDGREINRL 154
>gi|261202488|ref|XP_002628458.1| thymidylate kinase [Ajellomyces dermatitidis SLH14081]
gi|239590555|gb|EEQ73136.1| thymidylate kinase [Ajellomyces dermatitidis SLH14081]
gi|239612282|gb|EEQ89269.1| thymidylate kinase [Ajellomyces dermatitidis ER-3]
Length = 232
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 29/212 (13%)
Query: 51 GVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTP----PSSIMSLREKFDAH-- 104
G + ++ LIV EGLD GKS + K L+ P + + +A+
Sbjct: 6 GTNEGQRGALIVVEGLDRAGKSTQCAILQKTLQEDGHEVKYRRFPDRTTEIGKMINAYLM 65
Query: 105 -----DSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLK 158
D +S + AA +I+QD+ V++DR+ +S Y A +
Sbjct: 66 GNTHLDDHAIHLLFSANRWEAATEIQQDISNGITVIIDRYSYSGVVYSAAKD-------- 117
Query: 159 LPDEDDDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-NAKFREL 215
+P D ++W + L +PD+ ++L +S + ++R + LE E ++ R+L
Sbjct: 118 IPGLSLD-WAWQPEIGLPQPDIWLFLNISP----EEAAKRGGYGLERYENDTFQSRIRQL 172
Query: 216 LTTIYRNMNNPELVFVDNSEKSVHESSNDIVE 247
T+ +P+ V + ++ ++ E + D++E
Sbjct: 173 FQTLIAR-EDPDNVHIIDAGRTEREVALDVIE 203
>gi|88810823|ref|ZP_01126080.1| thymidylate kinase [Nitrococcus mobilis Nb-231]
gi|88792453|gb|EAR23563.1| thymidylate kinase [Nitrococcus mobilis Nb-231]
Length = 222
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 30/204 (14%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLK-----ASLKSTPPSS---------IMSLREKF 101
R I EG++G GK+ +AK L+ A L P + ++ R +
Sbjct: 11 RPARFITVEGIEGAGKTSCLDYLAKLLRNQAIEAVLTREPGGTSLGEAVRALLLDHRFRG 70
Query: 102 DAHDSLLRRAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLP 160
A D+ + + ++A + I+ L Q VV DRF +T AY + + + L
Sbjct: 71 MAGDAETLLVFAARAQHLA-EVIRPALAAGQWVVCDRFTDATYAYQGGGRALGATRVGL- 128
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY 220
+ W + ++PD +YL V + L R++ R N E+E + F E + +Y
Sbjct: 129 -----LEHWAQSELRPDRTLYLDVPVTVGLGRIASRGNLDRFESERQ---AFFERVRCVY 180
Query: 221 --RNMNNPE---LVFVDNSEKSVH 239
R P+ + D S ++VH
Sbjct: 181 LERCRAEPQRMRRIEADGSREAVH 204
>gi|296817147|ref|XP_002848910.1| thymidylate kinase [Arthroderma otae CBS 113480]
gi|238839363|gb|EEQ29025.1| thymidylate kinase [Arthroderma otae CBS 113480]
Length = 233
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 37/222 (16%)
Query: 52 VGDDRKYPLIVFEGLDGCGKSHTSQTV-------AKKLKASLKSTPPSSIMSLREKF--- 101
V + R+ L+V EGLD GKS T+ K+K +SI + +K+
Sbjct: 5 VTNARRGALVVVEGLDRAGKSTQCATLYQFLINQGHKVKYIRFPDRTTSIGQMIDKYLRG 64
Query: 102 ----DAHDSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSD 156
D H L +S + AA I+QD++ V++DR+ +S + Y A E N +
Sbjct: 65 EIQLDDHAVHL---LFSANRWEAAAQIRQDIEGGITVIVDRYSYSGAVYSAAKE---NKE 118
Query: 157 LKLPDEDDDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKKNAKFR 213
L+L ++W + L +PD+ +L +S + ++R + E E + K
Sbjct: 119 LQLD------WAWRPEIGLPRPDIWFFLNIS----TESAAKRGGYGTERYETVNLQKKVG 168
Query: 214 ELLTTIYRNMNNPELVFVDNS---EKSVHESSNDIVELIHNL 252
+L ++ N ++ VD E+ E +++++ I N+
Sbjct: 169 KLFISLSGLKGNEDMRVVDAGREIEEISRELQSEVLQTIANI 210
>gi|73663583|ref|YP_302364.1| thymidylate kinase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|123641634|sp|Q49UZ1.1|KTHY_STAS1 RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|72496098|dbj|BAE19419.1| thymidylate kinase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 205
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 37/212 (17%)
Query: 59 PLIVFEGLDGCGKSHTSQTVAKKLK---ASLKSTPPSSIMS---LREKF-------DAHD 105
I FEG +G GK+ Q VA+KL+ + + + P + + +RE D +
Sbjct: 3 AFITFEGPEGSGKTTVIQQVAQKLENQYSVVLTREPGGVKTGEQIREVLLEGDDMDDRTE 62
Query: 106 SLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAY-----GMANELVKNSDLKLP 160
+LL A S ++ + I + V+ DR+ S+ AY G+ E VK+
Sbjct: 63 ALLFAA--SRREHLVGKVIPSLENGKLVLCDRYIDSSLAYQGYARGIGIEEVKS------ 114
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL-KKNAKFRELLTTI 219
I + + + PD+ IYL VS A+ +R+ + + +N L +++ KF E +
Sbjct: 115 -----INEFAINGLYPDITIYLDVSVAVGRERILKNQR---NQNRLDQEDVKFHEKVVEG 166
Query: 220 YRNM--NNPELVFVDNSEKSVHESSNDIVELI 249
Y+ + N E V +++S+ E N E I
Sbjct: 167 YKKIIHNESERFIVIEADRSIDEVVNATYESI 198
>gi|329766083|ref|ZP_08257642.1| thymidylate kinase [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329137354|gb|EGG41631.1| thymidylate kinase [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 193
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 50/211 (23%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA-SLKSTP-------------PSSIMSLREKFD--- 102
+IV EG D GK + +AK LK +K+T S ++ + KF
Sbjct: 2 IIVIEGGDQAGKKTQTALLAKALKQRKIKTTTFSFPDYKTPIGKEISKYLNGKRKFPPQV 61
Query: 103 AHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANEL----VKNSDLK 158
H L + L + I AQ + ++M+R++ S YG+AN + ++N D
Sbjct: 62 IHCLLAANRWEKLNDIINAQS-----KNSVIIMNRYYQSNLIYGLANGMNRKWLENLDSG 116
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVS--EAIRLQRLSRRKNFTLEENELKKNAKFRELL 216
LP K DLVI L VS E+ R ++ +R K +KN +F +
Sbjct: 117 LP--------------KADLVILLDVSQTESFRRKKTNRDK--------FEKNEEFLRNI 154
Query: 217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVE 247
+ IYR + E + ++ + E DI++
Sbjct: 155 SKIYRKIAKQENWKIIDASRPKQEVHKDILQ 185
>gi|15643856|ref|NP_228905.1| thymidylate kinase [Thermotoga maritima MSB8]
gi|418044741|ref|ZP_12682837.1| thymidylate kinase [Thermotoga maritima MSB8]
gi|8134526|sp|Q9X0I3.1|KTHY_THEMA RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|238828331|pdb|3HJN|A Chain A, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
gi|238828332|pdb|3HJN|B Chain B, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
gi|4981644|gb|AAD36175.1|AE001769_5 thymidylate kinase [Thermotoga maritima MSB8]
gi|351677823|gb|EHA60970.1| thymidylate kinase [Thermotoga maritima MSB8]
Length = 197
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 28/200 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMSLR-EKFDAHDSLLRRAYY 113
I FEG+DG GKS Q +A+ L K LK P + + K + + +A
Sbjct: 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAEL 61
Query: 114 SLGNYIAAQ-----DIKQDL-QKQPVVMDRFWHSTSAY-GMANELVKNSDLKLPDEDDDI 166
L ++A++ +IKQ L + V++DR+ S+ AY G L K +L D
Sbjct: 62 FL--FLASRNLLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELND----- 114
Query: 167 YSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNP 226
+ D + PDL Y+ V L+R F E+ E + + RE + R +P
Sbjct: 115 --FATDGLIPDLTFYIDVDVETALKRKGELNRF--EKREFLE--RVREGYLVLAR--EHP 166
Query: 227 ELVFVDNSEKSVHESSNDIV 246
E + V + ++S+ E D+V
Sbjct: 167 ERIVVLDGKRSIEEIHRDVV 186
>gi|321455804|gb|EFX66927.1| hypothetical protein DAPPUDRAFT_331571 [Daphnia pulex]
Length = 212
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 91/210 (43%), Gaps = 35/210 (16%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLK-----ASLKSTPPSS--IMSLREKF------- 101
++ LIV EG D GK+ Q + L+ A L P S I SL K+
Sbjct: 3 KRGALIVLEGCDRSGKTTQCQKAIRWLQESNKEAHLMRFPDRSTIIGSLINKYLECSTEL 62
Query: 102 DAHDSLLRRAYYSLGNYIAAQDIKQDLQKQP-VVMDRFWHSTSAYGMANELVKNSDLKLP 160
D H L +S + DIK+ LQK V++DR+ +S A+ + N DL+
Sbjct: 63 DDHAIHL---LFSANRWELLPDIKKLLQKGTNVIVDRYSYSGIAFSASK---PNMDLRWC 116
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY 220
+ D L+KPDLVI+L ++ R + E E N + ++++ + Y
Sbjct: 117 QQSD------SGLLKPDLVIFLDINPV----EAQTRGQYGSERYE---NLEMQKIVRSNY 163
Query: 221 RNMNNPELVFVDNSEKSVHESSNDIVELIH 250
+ + VD S +S+ E D+ L+
Sbjct: 164 LKLQDESWRVVDAS-RSMEEVWRDVCRLVQ 192
>gi|425448249|ref|ZP_18828227.1| Thymidylate kinase [Microcystis aeruginosa PCC 9443]
gi|389731026|emb|CCI04878.1| Thymidylate kinase [Microcystis aeruginosa PCC 9443]
Length = 210
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 37/219 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMS--LRE------------- 99
IVFEG+DG G S ++ + + KA L P ++ +RE
Sbjct: 5 FIVFEGIDGSGTSTQAKLLQEYFFKRGEKAVLSPEPSEGVIGRLIREIMQTNLISIKDKN 64
Query: 100 KFDAHDSLL---RRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSD 156
KFD + L R Y+ ++ + Q V+ R++ S+ AY N
Sbjct: 65 KFDRQMAYLFAADRHYHLYNDHDGVFKLIHQEQTH-VITTRYYFSSLAYNCNN------- 116
Query: 157 LKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL 216
P+E I + PD+VIY+ V I L R+ R + E +K K R++
Sbjct: 117 ---PEEFAFIRQLNQHFPNPDIVIYIDVLPDISLARIKNRAITEVYEKP-EKLMKVRQMF 172
Query: 217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPMF 255
I++ + + + +D S+ ++ + +I+ + LP F
Sbjct: 173 LEIFKEYQD-DCLQLDGSD-TIEQLHQNIINYLEQLPAF 209
>gi|170289496|ref|YP_001739734.1| dTMP kinase [Thermotoga sp. RQ2]
gi|238688806|sp|B1L821.1|KTHY_THESQ RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|170176999|gb|ACB10051.1| dTMP kinase [Thermotoga sp. RQ2]
Length = 197
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 28/200 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMSLR-EKFDAHDSLLRRAYY 113
I FEG+DG GKS Q +A+ L K LK P + + K + + +A
Sbjct: 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAEL 61
Query: 114 SLGNYIAAQ-----DIKQDL-QKQPVVMDRFWHSTSAY-GMANELVKNSDLKLPDEDDDI 166
L ++A++ +IKQ L + V++DR+ S+ AY G L K ++ +E +D+
Sbjct: 62 FL--FLASRNLLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGK----EIVEELNDL 115
Query: 167 YSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNP 226
+ D + PDL Y+ V L+R F E+ E ++ RE + R +P
Sbjct: 116 AT---DGLIPDLTFYIDVDVETALKRKGELNRF--EKREFLEHV--REGYLVLAR--EHP 166
Query: 227 ELVFVDNSEKSVHESSNDIV 246
E + V + ++S+ E D+V
Sbjct: 167 ERIVVLDGKRSIEEIHRDVV 186
>gi|147919740|ref|YP_686514.1| putative thymidylate kinase [Methanocella arvoryzae MRE50]
gi|110621910|emb|CAJ37188.1| putative thymidylate kinase [Methanocella arvoryzae MRE50]
Length = 208
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 92/204 (45%), Gaps = 33/204 (16%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAH--DSLLRRAY 112
D+K LI EG+DG GKS T K L+ ++ ++ L+E + RRA
Sbjct: 4 DKKGFLISIEGIDGAGKS----TQIKMLQRWMQDRKIEHVI-LKEPTAGQYGREIARRAI 58
Query: 113 YSLGN------YIAAQDIKQDLQK---------QPVVMDRFWHSTSAYGMANELVKNSDL 157
++ +D K+D++K + VVMDR++ S AY A L D
Sbjct: 59 AHEATSTEEELWLFMEDRKEDVEKNILPALRAGKVVVMDRYYQSNIAYQGARGL----DT 114
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKN-AKFRELL 216
+ E+++ +S +PDLVI L + A L R+ ++ L+ E ++ K R +
Sbjct: 115 EKIREENERFS-----PRPDLVIVLDIDPARGLSRIVNQRKSQLDAFEKEEYLQKVRNIF 169
Query: 217 TTIYRNMNNPELVFVDNSEKSVHE 240
I R N ++ D S + VH+
Sbjct: 170 LDIGRQPNGV-IISADQSPEKVHQ 192
>gi|332653937|ref|ZP_08419681.1| dTMP kinase [Ruminococcaceae bacterium D16]
gi|332517023|gb|EGJ46628.1| dTMP kinase [Ruminococcaceae bacterium D16]
Length = 223
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 33/166 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK----------STPPSSI--MSLREKFDAH--- 104
LIVFEG DG GKS Q + +++ S + + P S++ M L +F H
Sbjct: 6 LIVFEGTDGSGKSTQFQALCRRVTQSGREYQKLVFPQYNEPSSALIRMYLAGEFGTHPQD 65
Query: 105 -DSLLRRAYYSLGNYIAAQDIKQDLQKQP--VVMDRFWHSTSAYGMANELVKNSDLKLPD 161
+ A+Y++ Y + + + + +Q V+ DR+ S + + + VK + P
Sbjct: 66 VNPYAASAFYAVDRYASLKKVWGEYYEQGGLVLTDRYTTSNAVH----QAVKCA----PQ 117
Query: 162 EDDDIYSWPKD-------LMKPDLVIYLTVSEAIRLQRLSRRKNFT 200
E + W D L +PDLV+YL + ++ L RR+ T
Sbjct: 118 EREAFLRWLDDFEHDKLGLPRPDLVLYLDMPTERAVELLRRREAAT 163
>gi|28493662|ref|NP_787823.1| thymidylate kinase [Tropheryma whipplei str. Twist]
gi|28572855|ref|NP_789635.1| nucleotide kinase [Tropheryma whipplei TW08/27]
gi|46576523|sp|Q83FM3.1|KTHY_TROWT RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|46576525|sp|Q83HB8.1|KTHY_TROW8 RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|28410988|emb|CAD67373.1| putative nucleotide kinase [Tropheryma whipplei TW08/27]
gi|28476704|gb|AAO44792.1| thymidylate kinase [Tropheryma whipplei str. Twist]
Length = 199
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 26/151 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK----STPPSSIMSLREKFDAHDSLLR------ 109
+ FEG+DG GK+ + LKAS K + P +I +R+ A D +R
Sbjct: 2 FVTFEGIDGSGKTAQLTAAGEFLKASGKQVVLTREPGTISCIRDYVLASDMDIRTEALLY 61
Query: 110 ---RAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMA-NELVKNSDLKLPDEDDD 165
RA N I A + + V+ DR+ S AY +A N+LV+ ++L
Sbjct: 62 SADRAENIAKNVIPALN-----AGKVVLQDRYLDSFLAYQLADNKLVETDIMRL------ 110
Query: 166 IYSWPKDLMKPDLVIYLTVSEAIRLQRLSRR 196
+ + ++PDL + ++ A +RL R
Sbjct: 111 -FEFSSQGLRPDLTLLFDLTPACAQERLENR 140
>gi|300871563|ref|YP_003786436.1| thymidylate kinase [Brachyspira pilosicoli 95/1000]
gi|404476534|ref|YP_006707965.1| thymidylate kinase [Brachyspira pilosicoli B2904]
gi|431807687|ref|YP_007234585.1| thymidylate kinase [Brachyspira pilosicoli P43/6/78]
gi|434381627|ref|YP_006703410.1| thymidylate kinase [Brachyspira pilosicoli WesB]
gi|300689264|gb|ADK31935.1| thymidylate kinase [Brachyspira pilosicoli 95/1000]
gi|404430276|emb|CCG56322.1| thymidylate kinase [Brachyspira pilosicoli WesB]
gi|404438023|gb|AFR71217.1| thymidylate kinase [Brachyspira pilosicoli B2904]
gi|430781046|gb|AGA66330.1| thymidylate kinase [Brachyspira pilosicoli P43/6/78]
Length = 203
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 97/212 (45%), Gaps = 41/212 (19%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYS-- 114
K LIV EG+DG GKS T+AKKL +L +I + + + LR S
Sbjct: 2 KGKLIVIEGIDGSGKS----TIAKKLAETLNKNNIETIYTFEPTNAYYGAKLRDTMLSKD 57
Query: 115 ------LGNYIAAQD------IKQDLQK-QPVVMDRFWHSTSAY----GMANELVKNSDL 157
L ++ + IK L++ + VV+DR+ +S+ AY G+ E +KN
Sbjct: 58 MDLDRELELFVDDRKEHIRLMIKPSLEEGKTVVLDRYMYSSIAYQGAKGIDIEKIKNMHE 117
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
++ PD+V + L R+ ++ F + +N ++ + +
Sbjct: 118 SF-------------ILIPDIVFIFHLPVEKSLNRIMEKRGFI----DRFENEEYLKKVD 160
Query: 218 TIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
+I+ + N P ++ N++KS+ + + +++E++
Sbjct: 161 SIFSSFNEP-FIYHINADKSIDDINKELIEIL 191
>gi|66804303|ref|XP_635930.1| thymidylate kinase [Dictyostelium discoideum AX4]
gi|74851984|sp|Q54GN2.1|KTHY_DICDI RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|60464271|gb|EAL62422.1| thymidylate kinase [Dictyostelium discoideum AX4]
Length = 222
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 34/201 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVA-----------KKLKASLKSTPPSSIMS--LREKFDAHDS 106
I+FEG+D GKS Q++ K L+ ++TP I++ L+ + D
Sbjct: 21 FILFEGVDRVGKSTQVQSLTNHISNVQKLPTKSLRFPDRTTPIGQIINQYLQNATNMDDR 80
Query: 107 LLRRAYYSLGNYIAAQDIKQDL--QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD 164
L + S N A+D +L +V+DR+ +S AY A K D D
Sbjct: 81 ALHLLFSS--NRWEARDSILELLNNGTNIVVDRYSYSGVAYSAA----KGIDF------D 128
Query: 165 DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN 224
Y+ K L KPDL+ YL++S + ++R + E E +F++ + IY
Sbjct: 129 WCYACEKGLPKPDLIFYLSMSS----EDATKRGEYGGERYE---KLEFQKKIKQIYEEKL 181
Query: 225 NPELVFVDNSEKSVHESSNDI 245
+ + N+ +S+ E SN+I
Sbjct: 182 VDDQWKIINANRSIDEISNEI 202
>gi|384207683|ref|YP_005593403.1| thymidylate kinase [Brachyspira intermedia PWS/A]
gi|343385333|gb|AEM20823.1| thymidylate kinase [Brachyspira intermedia PWS/A]
Length = 203
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 34/195 (17%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYS-- 114
K LIV EG+DG GKS ++ L +L S SI + + S LR + S
Sbjct: 2 KGKLIVLEGIDGSGKS----SIGMMLTDALNSLGIKSIYTFEPTHAYYGSKLRESMLSKD 57
Query: 115 ------LGNYIA--AQDIKQDLQ-----KQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
L +IA + IK ++ +V+DR+ +S+ AY A + K
Sbjct: 58 LKPEEELSLFIADRKEHIKHMIKPAINDGYVIVLDRYMYSSIAYQGAKGIDKEY------ 111
Query: 162 EDDDIYSWPKD-LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY 220
IY+ KD +++PDLV L ++ L R+ ++ F + +N + E + ++
Sbjct: 112 ----IYNLHKDFILEPDLVFILHLNIETALNRIMEKRGFV----DRFENKHYLEEVDKVF 163
Query: 221 RNMNNPELVFVDNSE 235
+ N + +D S+
Sbjct: 164 YSFNASYIHHIDASK 178
>gi|258571125|ref|XP_002544366.1| thymidylate kinase [Uncinocarpus reesii 1704]
gi|237904636|gb|EEP79037.1| thymidylate kinase [Uncinocarpus reesii 1704]
Length = 212
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDAH 104
+ LIV EGLD GKS + KL+ ++T I+ LR +
Sbjct: 3 RGALIVMEGLDRAGKSTQCAVLVDKLREMGYKTNYIRFPDRTTSIGKIIDGYLRGEVQLE 62
Query: 105 DSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
D + +S + A I +D+ +V+DR+ +S + Y A N DL L
Sbjct: 63 DHAI-HLLFSANRWELASRIHEDISNGISIVIDRYSYSGAVYSAAK---GNKDLSLD--- 115
Query: 164 DDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKKNAKFRELLTTIY 220
++W + L +PD+ +L VS + RR + LE E + + +L ++
Sbjct: 116 ---WAWRPEIGLPRPDMWFFLNVSP----EEAERRGGYGLERYENVTLQLRVGKLFKSLQ 168
Query: 221 RNMNNPELVFVDNSEKSVHESSNDIVEL 248
NN E+ VD + +S E + I EL
Sbjct: 169 GMENNEEMRIVD-ANQSKEEVAQQIFEL 195
>gi|225683576|gb|EEH21860.1| thymidylate kinase [Paracoccidioides brasiliensis Pb03]
Length = 224
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 98/204 (48%), Gaps = 33/204 (16%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL------KSTPPSSIMSLREKFDAHDSLLR 109
++ LIV EGLD GKS + + L+ + T I + H+ +
Sbjct: 11 QRGALIVVEGLDRAGKSTQCALLQEALQRGGHENYGDRKTDQCPIW-----LETHNWMTI 65
Query: 110 RAY--YSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDI 166
++ +S + AA++I++D+ +++DR+ +S + Y A + +P D
Sbjct: 66 QSIFLFSANRWEAAKEIQKDISNGISIIIDRYSYSGAVYSAAKD--------VPGLSLD- 116
Query: 167 YSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFRELLTTIYRN 222
++W + L +PD+ ++L +S + +RR + LE EN++ + A+ R+L T +
Sbjct: 117 WAWQPEIGLPQPDIWLFLNISP----EEAARRGGYGLERYENDILQ-ARVRQLFQT-FIE 170
Query: 223 MNNPELVFVDNSEKSVHESSNDIV 246
+P V V N+ +S + + DI+
Sbjct: 171 REDPANVCVINAGRSEADVAQDIL 194
>gi|327353237|gb|EGE82094.1| thymidylate kinase [Ajellomyces dermatitidis ATCC 18188]
Length = 225
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 92/207 (44%), Gaps = 29/207 (14%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTP----PSSIMSLREKFDAH------- 104
R LIV EGLD GKS + K L+ P + + +A+
Sbjct: 4 RGGALIVVEGLDRAGKSTQCAILQKTLQEDGHEVKYRRFPDRTTEIGKMINAYLMGNTHL 63
Query: 105 DSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
D +S + AA +I+QD+ V++DR+ +S Y A + +P+
Sbjct: 64 DDHAIHLLFSANRWEAATEIQQDISNGITVIIDRYSYSGVVYSAAKD--------IPELS 115
Query: 164 DDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-NAKFRELLTTIY 220
D ++W + L +PD+ ++L +S + ++R + LE E ++ R+L T+
Sbjct: 116 LD-WAWQPEIGLPQPDIWLFLNISP----EEAAKRGGYGLERYENDTFQSRIRQLFQTLI 170
Query: 221 RNMNNPELVFVDNSEKSVHESSNDIVE 247
+P+ V + ++ ++ E + D++E
Sbjct: 171 AR-EDPDNVHIIDAGRTEREVALDVIE 196
>gi|330916235|ref|XP_003297345.1| hypothetical protein PTT_07709 [Pyrenophora teres f. teres 0-1]
gi|311330039|gb|EFQ94563.1| hypothetical protein PTT_07709 [Pyrenophora teres f. teres 0-1]
Length = 155
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 35/146 (23%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDAHDSL 107
LIVFEGLD GKS Q + + L+ ++TP +++ L + D +
Sbjct: 6 LIVFEGLDRAGKSTQCQKLVEDLQNDGMKVRHMRFPDRTTPIGQMINSYLSGDSEQEDHV 65
Query: 108 LRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMAN-------ELVKNSDLKL 159
+ +S + AA I+ DL +++DR+++S Y A E +N +L L
Sbjct: 66 I-HLLFSANRWEAANSIQADLTAGTTIIIDRYYYSGCVYSAAKQKHDMSLEWCRNPELGL 124
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVS 185
P +PDL I+L +S
Sbjct: 125 P--------------RPDLCIFLDIS 136
>gi|45198887|ref|NP_985916.1| AFR369Wp [Ashbya gossypii ATCC 10895]
gi|44984916|gb|AAS53740.1| AFR369Wp [Ashbya gossypii ATCC 10895]
gi|374109147|gb|AEY98053.1| FAFR369Wp [Ashbya gossypii FDAG1]
Length = 213
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 18/197 (9%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL-------KSTPPSSIMS--LREK-FDAHDSLLR 109
LI+ EGLD GKS +A++L+ + + TP +++ LR++ F+ D
Sbjct: 6 LILIEGLDRVGKSTQVGVLAERLQPHVQLMRFPARDTPVGALLDRYLRDRDFELADQTAH 65
Query: 110 RAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
+ + AA+ Q V++DR+ +S +AY A V DL+ D
Sbjct: 66 LLFAANRWECAARIEAALAAGQHVILDRYVYSGAAYSAAKA-VPRMDLEWCAAAD----- 119
Query: 170 PKDLMKPDLVIYLT-VSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPEL 228
+ L KPDL ++LT + A + + + + + + A+F +L L
Sbjct: 120 -RGLPKPDLTLFLTQGAAAAAQRAGYGAERYEQPDFQERVRAQFERVLAAEDAAYRAEHL 178
Query: 229 VFVDNSEKSVHESSNDI 245
VFVD + KSV + +I
Sbjct: 179 VFVDVAGKSVAAVAGEI 195
>gi|297569137|ref|YP_003690481.1| thymidylate kinase [Desulfurivibrio alkaliphilus AHT2]
gi|296925052|gb|ADH85862.1| thymidylate kinase [Desulfurivibrio alkaliphilus AHT2]
Length = 222
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 29/215 (13%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLK-------ASLKSTPPSSIMSLREKFDAHDSLL 108
R LI EG+DG GKS Q +A++L+ + + T LRE F SL
Sbjct: 12 RAGVLIALEGIDGTGKSTQQQLLAQRLRQLGLEVVVTREPTDGPYGRRLRELFLNRASLS 71
Query: 109 RRAYYSLGNYIA------AQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLPD 161
L ++A A+ I+ L+ VV+ DR+++ST+AY A+ + L +
Sbjct: 72 PEEELQL--FLADRREHVAKLIEPALKAGRVVITDRYYYSTAAYQGASGHDPAAILAI-- 127
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYR 221
++ ++ +PDLV+ L A+ ++R+ + +L N+ ++ R + I+
Sbjct: 128 --NESFA-----PRPDLVLLLEAPPAVGVRRVQEGRGESL--NDFEQEDYLRR-VAGIFA 177
Query: 222 NMNNPELVFVDNSEKSVHESSNDIVELIHNLPMFK 256
+ P LV V N+ ++ + +I + + L M K
Sbjct: 178 GFSAPGLVRV-NATGAIEQVQVEIWQAVEALLMSK 211
>gi|50303763|ref|XP_451827.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640959|emb|CAH02220.1| KLLA0B06556p [Kluyveromyces lactis]
Length = 208
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 23/204 (11%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK--ASLKSTP--PSSIMSLREKFDAHDSLLRRA---- 111
LI+ EGLD GKS + V L A L P + I L ++ A
Sbjct: 6 LILIEGLDRTGKSTQCENVVNALGNDAVLIKFPDRTTKIGQLINQYLTDKDFELPAQSIH 65
Query: 112 -YYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
+S + ++I L+ + VV+DR+ +S AY A ++ D+ ++
Sbjct: 66 LLFSANRWELKEEIHSMLKAGKHVVLDRYVYSGVAYSAAKG-IQGMDISW------CFNP 118
Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKKNAKFRELLTTIYRNMNNPEL 228
K L+KPDL ++ + S +R R+ F E E ++ + R+ ++ + +
Sbjct: 119 DKGLLKPDLTLFFSNSSNMR-----DREGFGEERYEKVEFQRQVRDTFFNVFDQIKDSNR 173
Query: 229 VFVDNSEKSVHESSNDIVELIHNL 252
+ +D S+KS+ E ++I LIH++
Sbjct: 174 IVIDVSDKSIDEVFSEIKPLIHDV 197
>gi|417932688|ref|ZP_12576026.1| dTMP kinase [Propionibacterium acnes SK182B-JCVI]
gi|340774324|gb|EGR96811.1| dTMP kinase [Propionibacterium acnes SK182B-JCVI]
Length = 215
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 20/153 (13%)
Query: 46 NDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSSIMS--LR 98
DQ + G D +VFEG DG GK+ S+ + + L A + P S + +R
Sbjct: 2 TDQQTVAGRDLGGVFVVFEGGDGAGKTTQSRLLEQWLTAERIPHLMTREPGDSWLGQRIR 61
Query: 99 EKFDAHDS--LLRRAYYSLGNYIAAQDIKQDL-----QKQPVVMDRFWHSTSAYGMANEL 151
E + DS + RA L N AQ + + + + + VV DR+ ST AY A +
Sbjct: 62 ELVLSPDSGPISSRAEALLYNADKAQHVDEVVIPALKKGKVVVCDRYVDSTIAYQGAGRV 121
Query: 152 VKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTV 184
+ P E + SW + PDL + L V
Sbjct: 122 LD------PAEVGQLASWATTGLVPDLTVLLDV 148
>gi|37206|emb|CAA38528.1| thymidylate kinase [Homo sapiens]
Length = 211
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 88/210 (41%), Gaps = 50/210 (23%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR------ 109
R+ LIV EG+D GKS T ++KL +L PP ++ E+ LL
Sbjct: 4 RRGALIVLEGVDRAGKS----TQSRKLVEALSRGPPPELLRFPERSTEIGKLLSSYLQKK 59
Query: 110 --------RAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNS 155
+S + IK+ L Q +V+DR+ S A+ A E K
Sbjct: 60 SDVEDHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQP 119
Query: 156 DLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE- 214
D+ LP KPDLV++L ++L ++R F E E N F+E
Sbjct: 120 DVGLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NGAFQER 158
Query: 215 LLTTIYRNMNNPELVF--VDNSEK--SVHE 240
L ++ M + L + VD S++ +VHE
Sbjct: 159 ALRCFHQLMKDTTLNWKMVDASKRLEAVHE 188
>gi|291900|gb|AAA21719.1| thymidylate kinase [Homo sapiens]
Length = 212
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 45/208 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + + L A+ +ST ++S L++K D
Sbjct: 4 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLKKKSDV 63
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +V+DR+ S A+ A E K D+
Sbjct: 64 EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV 122
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
LP KPDLV++L ++L ++R F E E N F+E
Sbjct: 123 GLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NGAFQERAL 161
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
+ + N ++V S ++VHE
Sbjct: 162 RCFHQLMKDTTLNWKMVDASKSIEAVHE 189
>gi|389860445|ref|YP_006362684.1| thymidylate kinase [Thermogladius cellulolyticus 1633]
gi|388525348|gb|AFK50546.1| thymidylate kinase [Thermogladius cellulolyticus 1633]
Length = 205
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 92/211 (43%), Gaps = 32/211 (15%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTP--PSSIMSLREKF-DAHDSL 107
R+ +V EGLDG GK+ + + +L +A+ P S + +++ ++ A D+
Sbjct: 7 RRGLFLVLEGLDGSGKTSIANILISRLGELGYRATYTYEPYDSSIVRAVKGEYSSARDAY 66
Query: 108 LRRAYYSLGNYIAAQDIKQDLQKQP--VVMDRFWHSTSAY----GMANELVKNSDLKLPD 161
+ Y+L I + + + ++ VV DR+++S+ AY G E V + P
Sbjct: 67 VDALAYALDRLIHWKTVIEPALREGAVVVCDRYFYSSVAYQTASGAPYEWVLEVNRFAP- 125
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYR 221
+PDL +YL V ++ L+R+K E ++ F + +Y
Sbjct: 126 -------------RPDLAVYLDVEPSL---GLARKKGVPSRFPEYER-VDFLSRVREVYL 168
Query: 222 NMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
M L+ V +S + + E D+ L+ L
Sbjct: 169 RMVREGLLVVVDSSRGLEEVFRDVWGLVRPL 199
>gi|367015158|ref|XP_003682078.1| hypothetical protein TDEL_0F00560 [Torulaspora delbrueckii]
gi|359749740|emb|CCE92867.1| hypothetical protein TDEL_0F00560 [Torulaspora delbrueckii]
Length = 176
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 66/137 (48%), Gaps = 23/137 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK--ASLKSTPPSS--IMSLREKFDAHDSLLR-----R 110
LI+ EGLD GK+ S + KLK A+L P S I L +K+ S +
Sbjct: 6 LILIEGLDRTGKTTQSNILLDKLKPNATLIKFPDRSTEIGQLIDKYLTDRSFVLPDQAVH 65
Query: 111 AYYSLGNYIAAQDIKQ-DLQKQPVVMDRFWHSTSAYGMANELV---KNSDLKLPDEDDDI 166
+S + AQ I++ L + VV+DR+ +S AY A + +N L+ PD
Sbjct: 66 LLFSANRWEVAQSIRELLLAGKHVVLDRYVYSGIAYSAAKGVAGMDRNWCLQ-PD----- 119
Query: 167 YSWPKDLMKPDLVIYLT 183
K L+KPDL I+LT
Sbjct: 120 ----KGLLKPDLTIFLT 132
>gi|315501244|ref|YP_004080131.1| thymidylate kinase [Micromonospora sp. L5]
gi|315407863|gb|ADU05980.1| thymidylate kinase [Micromonospora sp. L5]
Length = 717
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 27/211 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK---------STPPSS-IMSLREKFDAHDSLLR 109
+VFEG +G GKS +A++L+A + +TP I SL + ++
Sbjct: 479 FVVFEGGEGAGKSTQLAELAERLRAQGRDVVVTREPGATPVGKRIRSLVLGTNPGEAPSP 538
Query: 110 RA----YYSLGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLP-DED 163
RA Y + + A ++ L + VV+ DR+ S+ AY + + LP DE
Sbjct: 539 RAEALLYAADRAHHVATVVRPALVRGAVVISDRYVDSSLAY-------QGAGRTLPVDEV 591
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFT--LEENELKKNAKFRELLTTIYR 221
+ SW +KPDLV+ L V L R+ R T LE L + + R +
Sbjct: 592 SWLSSWATGGLKPDLVVLLDVEPRTGLSRVEDRNEGTDRLEAESLTFHERVRYAFLDL-- 649
Query: 222 NMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
+P+ V ++ + + E+++ + + L
Sbjct: 650 AAGDPKRYLVLDASRPIDETADAVARRVGEL 680
>gi|406944059|gb|EKD75916.1| hypothetical protein ACD_43C00277G0002 [uncultured bacterium]
Length = 211
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 25/207 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKST-----PPSSIMS-------LREKFDAHDSL 107
IVFEG +G GKS Q A+ L+ ++ P + L + + L
Sbjct: 6 FIVFEGGEGSGKSSHVQLTAEFLRERGQTVITTHEPGGTAFGQHVRQLILEAQGGSTVPL 65
Query: 108 LRRAYYSLGNYIAAQDIKQDLQ-----KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
+ L AQ + + +Q + V+ DRF ST AY + + +DL E
Sbjct: 66 ATKTELLLFLADRAQHVAEMIQPALARGETVLCDRFTGSTLAYQIGGRKLSQTDLITSLE 125
Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL---EENELKKNAKFRELLTTI 219
++ +D ++P LVIYL + A+ ++R + N + +E +L + RE +
Sbjct: 126 -----TYARDGLQPHLVIYLDIEPALGIKRKRSQANHVMNSFDEFDLDFHNDVREYFCKL 180
Query: 220 YRNMNNPELVFVDNSEKSVHESSNDIV 246
++ N +++ S +V N ++
Sbjct: 181 AKSTANWKMIDASRSLTTVQYDINQLL 207
>gi|406994092|gb|EKE13146.1| hypothetical protein ACD_13C00083G0002 [uncultured bacterium]
Length = 221
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 88/219 (40%), Gaps = 45/219 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMSLRE----KFDAHDSLLRRA 111
IVFEG+ G GK + LK ++ + P I E FD D L +A
Sbjct: 12 FIVFEGVGGSGKGTQIELAKNLLKNNGIEAIYTREPGGIEPAEELRRFIFDLRDKKLIKA 71
Query: 112 YYSLGNYIAAQDIKQDLQKQP-------VVMDRFWHSTSAY-----GMANELVKN-SDLK 158
+ + AA+ D +P V+ DR ST AY G E + N SD+
Sbjct: 72 EGQMALFFAARKFWMDGLVKPNLDNGISVLTDRCHTSTGAYQGYAEGGDQETILNVSDIV 131
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN---FTLEENEL--KKNAKFR 213
L + KPD V+ L +S L R + N F E E + A +R
Sbjct: 132 LGN------------YKPDAVMLLDISRETSLARRGKNINGDPFDKESPEYFDRLIAGYR 179
Query: 214 ELLTTIYRNMNNPELVFVDNSEK---SVHESSNDIVELI 249
E+ +T + N+N +V N E+ V ES I+E +
Sbjct: 180 EMASTGWGNLN----WYVVNGEEDALKVSESVAGILETV 214
>gi|268315735|ref|YP_003289454.1| thymidylate kinase [Rhodothermus marinus DSM 4252]
gi|262333269|gb|ACY47066.1| thymidylate kinase [Rhodothermus marinus DSM 4252]
Length = 220
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 24/149 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSSIMSLREK---------FDAHD 105
LI FEG+DGCGKS ++ +A++L+ + L P + +S R + D
Sbjct: 2 LISFEGIDGCGKSTQARLLAQRLETAGYRTLLVREPGGTELSERIRGLLLDPALDIDPFA 61
Query: 106 SLLRRAYYSLGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSDLKLPDED 163
LL + + + + I+ LQ +V+ DRF+ ST+AY G +V+ + L+
Sbjct: 62 ELL--LFSAARRQLVVERIRPALQAGYIVLCDRFYDSTTAYQGGGRGVVELAWLR----- 114
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQR 192
D D + PD +L V + L R
Sbjct: 115 -DFNRRVTDGLVPDRTYWLDVPLEVALAR 142
>gi|194755687|ref|XP_001960115.1| GF13205 [Drosophila ananassae]
gi|190621413|gb|EDV36937.1| GF13205 [Drosophila ananassae]
Length = 211
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 90/200 (45%), Gaps = 31/200 (15%)
Query: 52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA------SL----KSTPPSSIMS--LRE 99
+G ++ LIVFEG D GKS S+ +A+ LK+ SL +ST +++ L
Sbjct: 1 MGPIKRGALIVFEGCDRSGKSTQSRRLAELLKSRGIPTESLNFPDRSTDIGQVINSYLTN 60
Query: 100 KFDAHDSLLRRAYYSLGNYIAAQDIKQD-LQKQPVVMDRFWHSTSAYGMANELVKNSDLK 158
D D ++ +S+ + ++Q L +++DR+ +S AY +A K D
Sbjct: 61 SKDLQDEVI-HLLFSVNRWELMGKLRQKLLAGTTLIVDRYSYSGVAYSVA----KGMDF- 114
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT 218
D Y+ + L+KPD V YL RL+ R F E E +F+ ++
Sbjct: 115 -----DWCYAPERGLIKPDAVFYLRAVP----DRLAERSEFGEERYE---KVEFQSRVSA 162
Query: 219 IYRNMNNPELVFVDNSEKSV 238
+Y + + E + + SV
Sbjct: 163 VYDRIFSNESTYWHQLDASV 182
>gi|406893454|gb|EKD38514.1| hypothetical protein ACD_75C00708G0006 [uncultured bacterium]
Length = 212
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 35/212 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYI 119
LIVFEG DG GKS T K L + L+ + + ++ +R Y + Y
Sbjct: 10 LIVFEGTDGTGKS----TQLKLLGSYLEECGYPVVTTREPTNGSYGRQIRNLYINRHEYS 65
Query: 120 AAQDIKQDL----------------QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
++++ L Q + V+ DR++ ST+AY A L +
Sbjct: 66 REEELELFLADRREHVLHLLEPCLRQGKIVLCDRYYFSTAAYQGALGL----------DP 115
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM 223
+ I + +PDLV+ L I ++R++ + TL E + +F E + I+ +
Sbjct: 116 ETILARNSFAPEPDLVLLLQAPLEIGMERITSGRGDTLNNFEQR---EFLEKVAAIFAAI 172
Query: 224 NNPELVFVD--NSEKSVHESSNDIVELIHNLP 253
+ P + +D S +VH D V + LP
Sbjct: 173 DRPYIRRIDASGSIAAVHRQVIDAVASLLALP 204
>gi|119591691|gb|EAW71285.1| deoxythymidylate kinase (thymidylate kinase), isoform CRA_c [Homo
sapiens]
Length = 254
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 45/208 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + + L A+ +ST ++S L++K D
Sbjct: 4 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 63
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +V+DR+ S A+ A E K D+
Sbjct: 64 EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV 122
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
LP KPDLV++L ++L ++R F E E N F+E
Sbjct: 123 GLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NGAFQERAL 161
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
+ + N ++V S ++VHE
Sbjct: 162 RCFHQLMKDTTLNWKMVDASKSIEAVHE 189
>gi|60831889|gb|AAX36988.1| deoxythymidylate kinase [synthetic construct]
Length = 213
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 45/208 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + + L A+ +ST ++S L++K D
Sbjct: 4 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 63
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +V+DR+ S A+ A E K D+
Sbjct: 64 EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV 122
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
LP KPDLV++L ++L ++R F E E N F+E
Sbjct: 123 GLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NGAFQERAL 161
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
+ + N ++V S ++VHE
Sbjct: 162 RCFHQLMKDTTLNWKMVDASKSIEAVHE 189
>gi|14488796|pdb|1E2D|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
Monophosphate, Adenosine Diphosphate And A Magnesium-Ion
gi|14488797|pdb|1E2E|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
Monophosphate, Adenosine Diphosphate,A Magnesium-Ion And
Alf3
gi|14488798|pdb|1E2F|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
Monophosphate, Adenosine Diphosphate And A Magnesium-Ion
gi|14488799|pdb|1E2G|A Chain A, Human Thymidylate Kinase Complexed With Adp, Tdp And A
Magnesium-Ion
gi|14488800|pdb|1E2Q|A Chain A, Human Thymidylate Kinase Complexed With Tp5a And A
Magnesium-Ion
gi|16975361|pdb|1E99|A Chain A, Human Thymidylate Kinase Complexed With Aztmp And Adp
gi|16975362|pdb|1E9A|A Chain A, Human Thymidylate Kinase Complexed With The Bisubstrate
Inhibitor Aztp5a
gi|16975363|pdb|1E9B|A Chain A, Human Thymidylate Kinase Complexed With Aztmp And Appnp
gi|29726714|pdb|1NMX|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Fltmp
And Adp
gi|29726716|pdb|1NMZ|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Nh2tmp
And Appnhp
gi|29726717|pdb|1NN0|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Ddtmp
And Adp
gi|29726718|pdb|1NN1|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Ddtmp
And Appnhp
gi|29726719|pdb|1NN3|A Chain A, Crystal Structure Of Human Thymidylate Kinase With D4tmp +
Adp
gi|29726720|pdb|1NN5|A Chain A, Crystal Structure Of Human Thymidylate Kinase With D4tmp +
Appnhp
Length = 215
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 45/208 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + + L A+ +ST ++S L++K D
Sbjct: 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 66
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +V+DR+ S A+ A E K D+
Sbjct: 67 EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV 125
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
LP KPDLV++L ++L ++R F E E N F+E
Sbjct: 126 GLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NGAFQERAL 164
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
+ + N ++V S ++VHE
Sbjct: 165 RCFHQLMKDTTLNWKMVDASKSIEAVHE 192
>gi|426339163|ref|XP_004033529.1| PREDICTED: thymidylate kinase isoform 1 [Gorilla gorilla gorilla]
Length = 212
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 45/208 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + + L A+ +ST ++S L++K D
Sbjct: 4 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGYRAELLRFPERSTEIGKLLSSYLQKKSDV 63
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +V+DR+ S A+ A E K D+
Sbjct: 64 EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV 122
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
LP KPDLV++L ++L ++R F E E N F+E
Sbjct: 123 GLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NGAFQERAL 161
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
+ + N ++V S ++VHE
Sbjct: 162 RCFHQLMKDTTLNWKMVDASKSIEAVHE 189
>gi|33303857|gb|AAQ02442.1| deoxythymidylate kinase [synthetic construct]
gi|54696972|gb|AAV38858.1| deoxythymidylate kinase (thymidylate kinase) [synthetic construct]
Length = 213
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 45/208 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + + L A+ +ST ++S L++K D
Sbjct: 4 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 63
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +V+DR+ S A+ A E K D+
Sbjct: 64 EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV 122
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
LP KPDLV++L ++L ++R F E E N F+E
Sbjct: 123 GLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NGAFQERAL 161
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
+ + N ++V S ++VHE
Sbjct: 162 RCFHQLMKDTTLNWKMVDASKSIEAVHE 189
>gi|42544174|ref|NP_036277.2| thymidylate kinase isoform 1 [Homo sapiens]
gi|114584335|ref|XP_001161768.1| PREDICTED: uncharacterized protein LOC744320 isoform 3 [Pan
troglodytes]
gi|397483839|ref|XP_003813098.1| PREDICTED: thymidylate kinase [Pan paniscus]
gi|56405325|sp|P23919.4|KTHY_HUMAN RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|12804775|gb|AAH01827.1| Deoxythymidylate kinase (thymidylate kinase) [Homo sapiens]
gi|49456983|emb|CAG46812.1| DTYMK [Homo sapiens]
gi|62822371|gb|AAY14920.1| unknown [Homo sapiens]
gi|119591690|gb|EAW71284.1| deoxythymidylate kinase (thymidylate kinase), isoform CRA_b [Homo
sapiens]
gi|187955102|gb|AAI47007.1| Deoxythymidylate kinase (thymidylate kinase) [Homo sapiens]
gi|187955947|gb|AAI47011.1| Deoxythymidylate kinase (thymidylate kinase) [Homo sapiens]
gi|410208480|gb|JAA01459.1| deoxythymidylate kinase (thymidylate kinase) [Pan troglodytes]
gi|410248952|gb|JAA12443.1| deoxythymidylate kinase (thymidylate kinase) [Pan troglodytes]
gi|410300456|gb|JAA28828.1| deoxythymidylate kinase (thymidylate kinase) [Pan troglodytes]
gi|410330053|gb|JAA33973.1| deoxythymidylate kinase (thymidylate kinase) [Pan troglodytes]
Length = 212
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 45/208 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + + L A+ +ST ++S L++K D
Sbjct: 4 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 63
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +V+DR+ S A+ A E K D+
Sbjct: 64 EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV 122
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
LP KPDLV++L ++L ++R F E E N F+E
Sbjct: 123 GLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NGAFQERAL 161
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
+ + N ++V S ++VHE
Sbjct: 162 RCFHQLMKDTTLNWKMVDASKSIEAVHE 189
>gi|342867607|gb|EGU72509.1| hypothetical protein FOXB_16984 [Fusarium oxysporum Fo5176]
Length = 1666
Score = 42.7 bits (99), Expect = 0.16, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 28/152 (18%)
Query: 1 MSSKYQLFAQYPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPL 60
+ + QL QY ++ V +LK+A SS E++EL +S V D +P
Sbjct: 1472 IGTSQQLRKQYSNVYDVHLVLKTAPGSSRTEIQEL-------------ESWVRD--VFPQ 1516
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGN--- 117
F+ ++ G+ VA +SL S+++ L E + H + LR A+Y++G
Sbjct: 1517 ASFDAINLGGQVRFVMPVA----SSLPDDGRSTVLRLMEILEQHRTSLRLAHYTVGTGTL 1572
Query: 118 ------YIAAQDIKQDLQKQPVVMDRFWHSTS 143
I D+ + LQ+ P + WH+T+
Sbjct: 1573 EMAFLRIIKNCDVPEVLQELPHGIVGVWHTTT 1604
>gi|359545626|pdb|2XX3|A Chain A, Human Thymidylate Kinase Complexed With Thymidine Butenyl
Phosphonate Monophosphate And Adp
Length = 232
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 45/208 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + + L A+ +ST ++S L++K D
Sbjct: 24 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 83
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +V+DR+ S A+ A E K D+
Sbjct: 84 EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV 142
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
LP KPDLV++L ++L ++R F E E N F+E
Sbjct: 143 GLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NGAFQERAL 181
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
+ + N ++V S ++VHE
Sbjct: 182 RCFHQLMKDTTLNWKMVDASKSIEAVHE 209
>gi|29726715|pdb|1NMY|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Fltmp
And Appnhp
Length = 209
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 45/208 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + + L A+ +ST ++S L++K D
Sbjct: 1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 60
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +V+DR+ S A+ A E K D+
Sbjct: 61 EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV 119
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
LP KPDLV++L ++L ++R F E E N F+E
Sbjct: 120 GLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NGAFQERAL 158
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
+ + N ++V S ++VHE
Sbjct: 159 RCFHQLMKDTTLNWKMVDASKSIEAVHE 186
>gi|259502695|ref|ZP_05745597.1| dTMP kinase [Lactobacillus antri DSM 16041]
gi|259169340|gb|EEW53835.1| dTMP kinase [Lactobacillus antri DSM 16041]
Length = 218
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 35/213 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDS-LLRRAYYSLGN- 117
I FEG DG GK+ + + K+L L + +M RE H S +RR +S N
Sbjct: 9 FISFEGPDGAGKTSVLRAIQKRLVDQLGA---DRVMYTREPGGNHISEQIRRVLFSPENT 65
Query: 118 ----------YIAAQ------DIKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSDLKL 159
+ AA+ +I L+ V++ DR+ S+ AY G +L + + ++
Sbjct: 66 DMDGRTEALLFAAARRQHIVSEIVPGLRAGKVILCDRYVDSSIAYQGAGRQLGEEAIWQM 125
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN---FTLEENELKKNAKFRELL 216
+ D + PDL IYL V A+ L+R++ + L+E +L + R
Sbjct: 126 -------NQFAIDGLLPDLTIYLDVESAVGLRRIAEHRADQVNRLDEEKLAFHQTVRAAY 178
Query: 217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
+YR +P+ + + ++ + + + D+ + I
Sbjct: 179 LRLYR--AHPDRIKLIDASQPLDQVIADVAQTI 209
>gi|357391580|ref|YP_004906421.1| hypothetical protein KSE_46840 [Kitasatospora setae KM-6054]
gi|311898057|dbj|BAJ30465.1| hypothetical protein KSE_46840 [Kitasatospora setae KM-6054]
Length = 215
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 8/198 (4%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYS 114
R L+V EG+ G GKS S +A++L A + P+ + L + H L + +
Sbjct: 15 GRSGALVVLEGISGSGKSTLSGLLAQRLGAEVLHVIPNPLAGLIGYVNDHGGTLTQFAFH 74
Query: 115 LGNYI-AAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDL 173
L + A ++ L +V DR W T + + + V DL++ + L
Sbjct: 75 LAGLLDGADSARRALVSGSLVADR-W--TGSVVVNHAAVNQLDLEV--AAAQFAPYLGYL 129
Query: 174 MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM--NNPELVFV 231
+ DL +YL SE R+ R + L + + + +YR +P + +
Sbjct: 130 PRADLTVYLETSEKEIRHRMETRPARPATDRFLVRRPQLLPRVQELYRRFAATDPTGIAI 189
Query: 232 DNSEKSVHESSNDIVELI 249
+S E + +I L+
Sbjct: 190 STDGRSPDELTEEIHALL 207
>gi|345302038|ref|YP_004823940.1| thymidylate kinase [Rhodothermus marinus SG0.5JP17-172]
gi|345111271|gb|AEN72103.1| Thymidylate kinase [Rhodothermus marinus SG0.5JP17-172]
Length = 220
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 24/155 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSSIMSLREK---------FDAHD 105
LI FEG+DGCGKS ++ +A++L+ + L P + +S R + D
Sbjct: 2 LISFEGIDGCGKSTQARLLAQRLEMAGYRTLLVREPGGTELSERIRGLLLDPALDIDPFA 61
Query: 106 SLLRRAYYSLGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSDLKLPDED 163
LL + + + + I+ LQ +V+ DRF+ ST+AY G + + S L+
Sbjct: 62 ELL--LFSAARRQLVVERIRPALQAGYIVLCDRFYDSTTAYQGGGRGVAELSWLR----- 114
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN 198
D D + PD +L V + L R ++ N
Sbjct: 115 -DFNRRVTDGLIPDRTYWLDVPLEVALARRNQEGN 148
>gi|270156732|ref|ZP_06185389.1| thymidylate kinase [Legionella longbeachae D-4968]
gi|289164821|ref|YP_003454959.1| thymidylate kinase [Legionella longbeachae NSW150]
gi|269988757|gb|EEZ95011.1| thymidylate kinase [Legionella longbeachae D-4968]
gi|288857994|emb|CBJ11854.1| putative thymidylate kinase [Legionella longbeachae NSW150]
Length = 212
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 35/162 (21%)
Query: 60 LIVFEGLDGCGKSHTSQTVA-----KKLKASLKSTPPSSIMS-----------LREKFDA 103
LIV EGL+G GKS TV +++K P + + R+ D
Sbjct: 8 LIVIEGLEGAGKSTAVNTVVDLLAERQIKTITTREPGGTAIGEILRNLIKNPEYRDVLDD 67
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDLQKQP-VVMDRFWHSTSAY-----GMANELVKNSDL 157
LL Y+ + Q I+ LQK V+ DRF ST AY G+ E++++
Sbjct: 68 RSELL--LLYTARIQLLKQVIEPALQKGMWVIADRFELSTMAYQGGGRGLDQEMIRH--- 122
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF 199
+ S+ +KPDL +YL +S ++R+ R
Sbjct: 123 --------LSSFSLQGLKPDLTLYLDISPEEGMRRVKSRGTL 156
>gi|329117616|ref|ZP_08246333.1| dTMP kinase [Streptococcus parauberis NCFD 2020]
gi|333905570|ref|YP_004479441.1| thymidylate kinase [Streptococcus parauberis KCTC 11537]
gi|326908021|gb|EGE54935.1| dTMP kinase [Streptococcus parauberis NCFD 2020]
gi|333120835|gb|AEF25769.1| thymidylate kinase [Streptococcus parauberis KCTC 11537]
gi|456370366|gb|EMF49262.1| Thymidylate kinase [Streptococcus parauberis KRS-02109]
gi|457096038|gb|EMG26509.1| Thymidylate kinase [Streptococcus parauberis KRS-02083]
Length = 218
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 34/181 (18%)
Query: 43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSSIM-- 95
N+ ND G+ +I FEG DG GK+ + + LKA + + P +
Sbjct: 3 NKVNDLSKGL-------IITFEGPDGAGKTSVLEALLPLLKAEFDKELITTREPGGVAIA 55
Query: 96 -SLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQP---------VVMDRFWHSTSAY 145
+RE ++ L YIAA+ +Q L ++ V+MDRF S+ AY
Sbjct: 56 EEIREVILDVNNTAMDYKTELLLYIAAR--RQHLVEKVLPAKEAGKIVLMDRFIDSSVAY 113
Query: 146 GMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE 205
+ + +D++ ++ + D + PDL +Y V ++ L R++ KN T E N
Sbjct: 114 QGSGRGLDKADIQWLND------FATDGVDPDLTLYFDVPSSVGLARIA--KNRTHEVNR 165
Query: 206 L 206
L
Sbjct: 166 L 166
>gi|418635166|ref|ZP_13197550.1| dTMP kinase [Staphylococcus lugdunensis VCU139]
gi|374842115|gb|EHS05562.1| dTMP kinase [Staphylococcus lugdunensis VCU139]
Length = 205
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 23/177 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS---LKSTPPSSIMSLRE----KFDAHDSLLRRAY 112
I FEG +G GK+ Q VA+KL + + P + + E D + +R
Sbjct: 4 FITFEGPEGSGKTTVIQAVAEKLAQDFDVISTREPGGVPTGEEIRKVVLDGNHMDIRTEA 63
Query: 113 Y----SLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAY-GMANELVKNSDLKLPDEDDDIY 167
S ++ + I Q + V+ DR+ S+ AY G A + KL D
Sbjct: 64 MLFAASRREHLVEKVIPALKQHKIVLCDRYIDSSLAYQGYARGIGIEEVRKLND------ 117
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL-KKNAKFRELLTTIYRNM 223
+ + + PDL IYL +S I QR+ N E+N L K++ KF L+ YR +
Sbjct: 118 -FAINGLYPDLTIYLDISAEIGRQRIM---NNQREQNRLDKEDLKFHNLVIEGYRQI 170
>gi|39939038|ref|NP_950804.1| hypothetical protein PAM_552 [Onion yellows phytoplasma OY-M]
gi|39722147|dbj|BAD04637.1| hypothetical protein [Onion yellows phytoplasma OY-M]
Length = 138
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 21/139 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK------ASLKSTPPSSI-MSLREKFDAHDSL--LRR 110
LIVFEGLDG GK+ Q V K+L+ +L+ SSI LR+ F + L L R
Sbjct: 3 LIVFEGLDGSGKTTLIQKVRKQLEKQGQEVITLQGLGSSSIGQPLRDIFLTNAQLKPLTR 62
Query: 111 AYYSLGNY--IAAQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
S N I ++IK L+ +++ DR+ S AY + D++ ++
Sbjct: 63 YLLSFANMQQIQEEEIKPHLETNKIILIDRWLGSNFAYQAYPRNI--------DKNYQLF 114
Query: 168 S-WPKDLMKPDLVIYLTVS 185
+ K +KPD+ ++++ S
Sbjct: 115 NLLNKQFIKPDMTLFISKS 133
>gi|221062039|ref|XP_002262589.1| thymidylate kinase [Plasmodium knowlesi strain H]
gi|193811739|emb|CAQ42467.1| thymidylate kinase, putative [Plasmodium knowlesi strain H]
Length = 219
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 35/221 (15%)
Query: 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS----------LKSTPPSSI 94
TND G +K IVFEGLD GKS S+ + + L+ + TP I
Sbjct: 8 TND-----GTKKKGKFIVFEGLDRSGKSTQSKLLVEHLRRKNVEVNHLCFPNRETPTGQI 62
Query: 95 MS--LREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQP-VVMDRFWHSTSAYGMANEL 151
++ L+ + D + + +S + +IK+ L K VV DR+ +S AY
Sbjct: 63 IAKYLKMQNDMTNETI-HLLFSANRWELMGEIKRLLSKGVWVVCDRYAYSGVAYSSGALK 121
Query: 152 VKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK 211
+ + PD+ L+KPD+V YL V QR + E+ + +
Sbjct: 122 LSKTWCMNPDQ---------GLIKPDVVFYLNVPPNYAQQRSEYGE-------EIYEKVE 165
Query: 212 FRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
++ + Y+N + + + K++++ D+V I L
Sbjct: 166 VQKRIYEAYKNFSQEDYWINLDGTKNINDIHQDVVNEITKL 206
>gi|365985734|ref|XP_003669699.1| hypothetical protein NDAI_0D01420 [Naumovozyma dairenensis CBS 421]
gi|343768468|emb|CCD24456.1| hypothetical protein NDAI_0D01420 [Naumovozyma dairenensis CBS 421]
Length = 217
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 20/136 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL--------KASLKSTPPSSIMS--LREK-FDAHDSLL 108
LI+ EGLD GK+ + + KKL K ++TP ++ L +K F D +
Sbjct: 6 LILVEGLDRTGKTTQTTLLLKKLSSQDAKLIKFPDRTTPIGKLIDNYLTDKEFHLPDQAV 65
Query: 109 RRAYYSLGNYIAAQDIKQ-DLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
+S + A IKQ L+ + V++DR+ +S AY A + DLK + D
Sbjct: 66 -HLLFSANRWEVADSIKQLLLEGKIVILDRYVYSGIAYSAAKN-IPGMDLKWCLQPD--- 120
Query: 168 SWPKDLMKPDLVIYLT 183
K L+KPDL I+LT
Sbjct: 121 ---KGLLKPDLTIFLT 133
>gi|289551719|ref|YP_003472623.1| thymidylate kinase [Staphylococcus lugdunensis HKU09-01]
gi|315660351|ref|ZP_07913204.1| thymidylate kinase [Staphylococcus lugdunensis M23590]
gi|385785266|ref|YP_005761439.1| putative thymidylate kinase [Staphylococcus lugdunensis N920143]
gi|418416015|ref|ZP_12989217.1| thymidylate kinase [Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|289181250|gb|ADC88495.1| Thymidylate kinase [Staphylococcus lugdunensis HKU09-01]
gi|315494640|gb|EFU82982.1| thymidylate kinase [Staphylococcus lugdunensis M23590]
gi|339895522|emb|CCB54851.1| putative thymidylate kinase [Staphylococcus lugdunensis N920143]
gi|410872925|gb|EKS20862.1| thymidylate kinase [Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 205
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 23/177 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS---LKSTPPSSIMSLRE----KFDAHDSLLRRAY 112
I FEG +G GK+ Q VA+KL + + P + + E D + +R
Sbjct: 4 FITFEGPEGSGKTTVIQAVAEKLAQDFDVISTREPGGVPTGEEIRKVVLDGNHMDIRTEA 63
Query: 113 Y----SLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAY-GMANELVKNSDLKLPDEDDDIY 167
S ++ + I Q + V+ DR+ S+ AY G A + KL D
Sbjct: 64 MLFAASRREHLVEKVIPALKQHKIVLCDRYIDSSLAYQGYARGIGIEEVRKLND------ 117
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL-KKNAKFRELLTTIYRNM 223
+ + + PDL IYL +S I QR+ N E+N L K++ KF L+ YR +
Sbjct: 118 -FAINGLYPDLTIYLDISAEIGRQRIM---NNQREQNRLDKEDLKFHNLVIEGYRQI 170
>gi|330797527|ref|XP_003286811.1| hypothetical protein DICPUDRAFT_97517 [Dictyostelium purpureum]
gi|325083184|gb|EGC36643.1| hypothetical protein DICPUDRAFT_97517 [Dictyostelium purpureum]
Length = 219
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 36/206 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVA-----------KKLKASLKSTPPSSIMS--LREKFDAHDS 106
I+FEG D GKS Q++ K L+ ++TP I++ L+ + D
Sbjct: 18 FILFEGADRVGKSTQVQSLTNHISNSRNLPTKSLRFPDRTTPIGQILNQYLQNATNMDDR 77
Query: 107 LLRRAYYSLGNYIAAQDIKQDL--QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD 164
L + S N A+D +L +V+DR+ +S AY A K D+ D
Sbjct: 78 ALHLLFSS--NRWEAKDSILELLNSGTNIVVDRYSYSGVAYTAA----KGIDV------D 125
Query: 165 DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY-RNM 223
YS K L +PD+V YL++S + ++R ++ E E +F+ + IY +
Sbjct: 126 WCYSCEKGLPEPDIVFYLSMS----TEDATKRGDYGGERYE---KVEFQMKIKQIYEEKL 178
Query: 224 NNPELVFVDNSEKSVHESSNDIVELI 249
P + N+ ++V E SN+I ++
Sbjct: 179 KRPSWKVI-NANRTVEEVSNEINQIF 203
>gi|350568817|ref|ZP_08937215.1| thymidylate kinase [Propionibacterium avidum ATCC 25577]
gi|348661060|gb|EGY77756.1| thymidylate kinase [Propionibacterium avidum ATCC 25577]
Length = 215
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 90/223 (40%), Gaps = 28/223 (12%)
Query: 46 NDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTV-----AKKLKASLKSTPPSSIMSLREK 100
DQ + G IV EG DG GK+ S+ + ++++ + P S + R +
Sbjct: 2 TDQQTRTGRYLGGLFIVLEGGDGAGKTTQSRLLDQWLTSQRISHLMTREPGGSGLGQRIR 61
Query: 101 ----FDAHDSLLRRAYYSLGNYIAAQDIKQDL-----QKQPVVMDRFWHSTSAYGMANEL 151
F + RA L N AQ ++Q + + + VV DR+ ST AY A +
Sbjct: 62 ELVLFPDSAEICPRAEALLYNADKAQHVEQVVIPALREGKVVVCDRYIDSTIAYQGAGRV 121
Query: 152 VKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK 211
+ P+E + SW + PDL + L V + +++ + E + +
Sbjct: 122 LD------PEEVAQLASWATAGLVPDLTVLLDVDPSEGAGKIAAKDRMEAAGEEFHRRVR 175
Query: 212 --FRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
F +L T +PE V N+ K E + I + + L
Sbjct: 176 QHFLDLADT------HPERYLVLNARKRREEIRDAISKQVSEL 212
>gi|425468803|ref|ZP_18847791.1| Thymidylate kinase [Microcystis aeruginosa PCC 9701]
gi|389884566|emb|CCI35174.1| Thymidylate kinase [Microcystis aeruginosa PCC 9701]
Length = 207
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 86/214 (40%), Gaps = 45/214 (21%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMS--LRE------------- 99
IVFEG+DG G S ++ + + KA L P ++ +RE
Sbjct: 5 FIVFEGIDGSGTSTQAKLLQEYFLKRGEKAVLSPEPSEGVIGRLIREIMQTNLISIKDQN 64
Query: 100 KFDAHDSLL---RRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSD 156
+FD + L R Y+ ++ + Q Q V+ R++ S+ AY N
Sbjct: 65 QFDRQMAYLFAADRHYHLYNDHDGVFKLIQQEQTH-VITTRYYFSSLAYNCNN------- 116
Query: 157 LKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL 216
P+E + + PDLVIY+ V I L R+ R + E + +K K R++
Sbjct: 117 ---PEEFAFVRQLNQHFPNPDLVIYIDVLPDISLARIKNRAITEVYEKQ-EKLMKVRQMF 172
Query: 217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVELIH 250
I++ + DN + ND +E +H
Sbjct: 173 LQIFKE-------YKDN---CLQLDGNDTIEHLH 196
>gi|114332254|ref|YP_748476.1| deoxynucleoside kinase [Nitrosomonas eutropha C91]
gi|114309268|gb|ABI60511.1| deoxynucleoside kinase [Nitrosomonas eutropha C91]
Length = 214
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKF---DAHDSLLRRAYYSLGN 117
IV EG G GK+ ++ +A +L SL P + L EKF +L + ++ L
Sbjct: 9 IVVEGPVGAGKTSLARNMATRLNCSLMLEQPEANPFL-EKFYEDTPRYALSTQLFFLLQR 67
Query: 118 YIAAQDIKQDLQ-KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY-----SWPK 171
Q ++Q+ Q VV D + + + + L + + +Y P
Sbjct: 68 RHQLQLMRQENGFSQSVVSDFLFEKGQLF---------AAVALSEPEHGLYRQICEQMPL 118
Query: 172 DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEEN 204
D PDLVIYL VS + ++R+ +R N TLE+N
Sbjct: 119 DAPAPDLVIYLQVSPEVLIKRIRQRGN-TLEQN 150
>gi|296206035|ref|XP_002750035.1| PREDICTED: thymidylate kinase isoform 1 [Callithrix jacchus]
Length = 212
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 88/208 (42%), Gaps = 45/208 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKL-----KASL-----KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + L +A L +ST ++S L +K D
Sbjct: 4 RRGALIVLEGMDRAGKSTQSRKLVDALCALGHRAELLRFPERSTEIGKLLSSYLEKKSDL 63
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +VMDR+ S A+ A E K D+
Sbjct: 64 EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVMDRYAFSGVAFSGAKENFSLDWCKQPDV 122
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
LP +PDLV++L ++L ++R F E E N F+E
Sbjct: 123 GLP--------------RPDLVLFLQ----LQLADAAKRSAFGHERYE---NGAFQERAL 161
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
+ + N ++V S ++VHE
Sbjct: 162 QCFHQLMRDTTVNWKMVDASKSIEAVHE 189
>gi|52841629|ref|YP_095428.1| thymidylate kinase [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|378777264|ref|YP_005185701.1| thymidylate kinase [Legionella pneumophila subsp. pneumophila ATCC
43290]
gi|59798153|sp|Q5ZVP1.1|KTHY_LEGPH RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|52628740|gb|AAU27481.1| thymidylate kinase [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|364508078|gb|AEW51602.1| thymidylate kinase [Legionella pneumophila subsp. pneumophila ATCC
43290]
Length = 212
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 42/220 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAY------- 112
LIV EGL+G GKS A L L S S ++ RE + R+
Sbjct: 8 LIVIEGLEGAGKS-----TAVNLVVELLSQKKISTITTREPGGTKIGEILRSIIKNPEYN 62
Query: 113 ------------YSLGNYIAAQDIKQDLQ-KQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
Y+ + Q IK L Q V+ DRF ST AY + D+++
Sbjct: 63 NVLDDRSELLLLYAARIQLIEQVIKPALNVGQWVIADRFELSTLAYQGGG---RKMDMRV 119
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTI 219
+E + ++ KPDL +YL ++ + + R R F E E + +F +
Sbjct: 120 INE---LSNFCLKGFKPDLTLYLDINPELGMIRAKSRGKFDRIEQE---SIEFFHRIHDT 173
Query: 220 YRNM--NNPELVFVDNSEKSVHESSNDIVELI-----HNL 252
Y + NPE++ +D + +S+ E + I +I HNL
Sbjct: 174 YHILVKQNPEIIMID-ANRSLEEVQSSIQSVIEEFIEHNL 212
>gi|414162630|ref|ZP_11418877.1| thymidylate kinase [Afipia felis ATCC 53690]
gi|410880410|gb|EKS28250.1| thymidylate kinase [Afipia felis ATCC 53690]
Length = 232
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 33/195 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDS------LLRRAYY 113
I FEG +G GKS Q +A LK+ T + RE + + LL
Sbjct: 19 FITFEGGEGSGKSTQIQMLADHLKSEGIET-----LVTREPGGSPGAEIIRHLLLSGVGK 73
Query: 114 SLGN------YIAAQD------IKQDLQKQP-VVMDRFWHSTSAYGMANELVKNSDLKLP 160
LG + AA+D IK L+K V+ DRF ST+AY A V + ++
Sbjct: 74 LLGADAETLLFAAARDDHVHQVIKPALEKGAWVLCDRFTDSTAAYQGAAGKVDAAFIRA- 132
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY 220
+ ++PDL L V A+ LQR +R+ + + ++ F E L Y
Sbjct: 133 -----LTHATIGKLEPDLTFILDVPVAVGLQRAIKRRGRAVADRFEGESLSFHESLRDAY 187
Query: 221 RNM---NNPELVFVD 232
R + N+ V +D
Sbjct: 188 RKIAEENSARCVVID 202
>gi|244539177|dbj|BAH83220.1| thymidylate kinase [Candidatus Ishikawaella capsulata Mpkobe]
Length = 211
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 18/187 (9%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVA-----KKLKASLKSTPPSSIMS-----LREKFDAHDS 106
K IV EG++G GKS + KK+K+ + P + ++ L ++ D
Sbjct: 3 KGKFIVVEGIEGAGKSTICNVIVDILSEKKIKSIITREPGGTPLAEQLRKLIKQGVEGDK 62
Query: 107 LLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDI 166
L+ +A L AA+ D QP + W + +++ + + + ++ E + I
Sbjct: 63 LIPKA--ELLMIYAARIQLLDTVIQPTLAKGIWVVGDRHNLSSYVYQGAGRQI--ELNLI 118
Query: 167 YSWPKDLM---KPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKKNAKFRELLTTIYRN 222
+ ++ KPDL IYL V+ I + R+ +R + L E E L + REL I N
Sbjct: 119 KTLSHQIIGDFKPDLTIYLDVTPEIGITRVCKRGSLDLIEQESLCFFKRVRELYLHIVAN 178
Query: 223 MNNPELV 229
N+ L+
Sbjct: 179 DNSMRLI 185
>gi|16975360|pdb|1E98|A Chain A, Wild Type Human Thymidylate Kinase Complexed With Aztmp
And Adp
Length = 215
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 45/208 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + + L A+ +ST ++S L++K D
Sbjct: 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 66
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +V+DR+ S A+ A E K D+
Sbjct: 67 EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV 125
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE-LL 216
LP KPDLV++L ++L ++R F E E N F+E L
Sbjct: 126 GLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NGAFQERAL 164
Query: 217 TTIYRNMNNPELVF--VDNSEK--SVHE 240
++ M + L + VD S++ +VHE
Sbjct: 165 RCFHQLMKDTTLNWKMVDASKRIEAVHE 192
>gi|377830034|ref|YP_005296194.1| unnamed protein product [Cotia virus SPAn232]
gi|377830120|ref|YP_005296368.1| unnamed protein product [Cotia virus SPAn232]
gi|377814277|gb|AFB76896.1| thymidylate kinase [Cotia virus SPAn232]
gi|377814363|gb|AFB76982.1| thymidylate kinase [Cotia virus SPAn232]
Length = 210
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 33/213 (15%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSS-------IMSLREKFD 102
D + LIVFEGLD GKS ++ + KL KA L P S + L +K D
Sbjct: 2 DSRGALIVFEGLDRVGKSTQTRMLVNKLCNLGYKAELLEFPKRSTDIGRVITLYLEKKID 61
Query: 103 AHDSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
+ +S + I++ + K +V+DR+ S AY +A + KN L+
Sbjct: 62 LEPHCV-HLLFSANRWEHVPLIQEKINKGITLVVDRYSFSGIAYTLAKK--KNISLEWTI 118
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYR 221
+ D + KPD++I+L + + R +F +E E F+ + ++
Sbjct: 119 QSDS------GIPKPDMIIFL------KFDNVESRTSFGIERYE---TVDFQNNVMVYFK 163
Query: 222 NMNNPELVF--VDNSEKSVHESSNDIVELIHNL 252
+ N + ++ + ++ K++++ ++I +L N+
Sbjct: 164 KLINDKSLYWEIIDASKNINDIHDEITKLSENI 196
>gi|197294449|ref|YP_001798990.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
gi|171853776|emb|CAM11708.1| Thymidylate kinase [Candidatus Phytoplasma australiense]
Length = 215
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 30/161 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP---------PSSIMS--LREKFDAHDSLL 108
LI FEG+DG GK+ T+ +LK ++ SSI+ +R F +
Sbjct: 5 LISFEGVDGSGKT----TLINELKKYFENKGYQIKVFQGLGSSIVGKEIRNLFLHQSKIS 60
Query: 109 RRAYY--SLGNYIAAQD---IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
+ Y SL N + QD I L V++DR++ ST AY + D D
Sbjct: 61 PKTKYLLSLANMLQTQDELIIPALLSGYLVLVDRWYGSTFAYQSKGNYI--------DYD 112
Query: 164 DDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLE 202
D I S + L+KP L YL + I +QR + N L+
Sbjct: 113 DKITSKIINHFLIKPKLTFYLDIDPKIGIQRKQNQTNHKLD 153
>gi|170077931|ref|YP_001734569.1| thymidylate kinase [Synechococcus sp. PCC 7002]
gi|169885600|gb|ACA99313.1| thymidylate kinase [Synechococcus sp. PCC 7002]
Length = 219
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 31/169 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTV-----AKKLKASLKSTPPSSIM------SLREK--FDAHDS 106
IVFEG+DG G S ++ + +K+ A L P + I+ +LR++ F
Sbjct: 9 FIVFEGIDGSGSSTQAELLYQHFQRQKIPAVLSPEPSNGIIGNLVRETLRQRLRFTTDPV 68
Query: 107 LLRR--AYYSLGN-----YIAAQDI-KQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLK 158
L R AY G+ Y + KQ V+ R++ S+ AY N
Sbjct: 69 QLNRQLAYLFAGDRHDHLYNEIDGVFKQLAAGIQVITTRYYFSSLAYNANNAA------- 121
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELK 207
E + IY +D PDLV Y + + L+R+ RR + + E + K
Sbjct: 122 ---EYEFIYRLNQDFPNPDLVFYCDLPVEVALERVQRRSHQEIYETKAK 167
>gi|449297760|gb|EMC93777.1| hypothetical protein BAUCODRAFT_210361 [Baudoinia compniacensis
UAMH 10762]
Length = 219
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 102/213 (47%), Gaps = 44/213 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTV----------AKKLKASLKSTPPSSIM-----SLREKFDAH 104
LIVFEGLD GKS + + A+ ++ ++TP ++ L + D
Sbjct: 8 LIVFEGLDRSGKSTQCERLVSHLRQEGHDAQHMRFPNRTTPIGQMINNYLSGLAQTEDHV 67
Query: 105 DSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
LL +S + +A +I++ + + VV+DR+++S GMA K + PD D
Sbjct: 68 IHLL----FSANRWESAAEIERLISEGTTVVIDRYYYS----GMAYTAAKGN----PDMD 115
Query: 164 DDIYSWPK-DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-NAKFRELLTTIYR 221
+ P+ L +PDL ++L VS + + R + E E ++ + REL +R
Sbjct: 116 LNWCRHPEVGLPRPDLCLFLDVSTEVAMS----RGGYGAERYEKREMQDRVREL----FR 167
Query: 222 NMNN-----PELVFVDNSEKSVHESSNDIVELI 249
+M + ++V VD + +S+ + + +I +L+
Sbjct: 168 DMRDHHDERSDIVLVD-ANRSIEDVAAEINDLV 199
>gi|374262755|ref|ZP_09621317.1| thymidylate kinase [Legionella drancourtii LLAP12]
gi|363536807|gb|EHL30239.1| thymidylate kinase [Legionella drancourtii LLAP12]
Length = 212
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 40/199 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAK-----KLKASLKSTPPSSIMS--LREKF----------D 102
LIV EGL+G GKS TV ++K P +++ LR+ D
Sbjct: 8 LIVIEGLEGAGKSTAVSTVIDYLTRLEIKTITTREPGGTVIGELLRQIIKGTEYKGVLDD 67
Query: 103 AHDSLLRRAYYSLGNYIAAQDIKQDLQKQP-VVMDRFWHSTSAY-----GMANELVKNSD 156
+ LL Y+ + Q IK LQ+ V+ DRF ST AY G+ ++++
Sbjct: 68 KSELLL---LYTARIQLLEQVIKPALQQGTWVIADRFELSTMAYQGGGRGLNEQMIQQ-- 122
Query: 157 LKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENELKKNAKFREL 215
+ ++ D KPDL +YL +S ++R+ R F +E+ + +
Sbjct: 123 ---------LSAFALDGFKPDLTLYLDISPEEGMKRVKSRGEFDRIEQQSIDFFHRVHS- 172
Query: 216 LTTIYRNMNNPELVFVDNS 234
+ I+ NP V +D
Sbjct: 173 -SYIHHVRTNPNAVLIDAG 190
>gi|258513464|ref|YP_003189686.1| thymidylate kinase [Desulfotomaculum acetoxidans DSM 771]
gi|257777169|gb|ACV61063.1| thymidylate kinase [Desulfotomaculum acetoxidans DSM 771]
Length = 233
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 40/228 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL--KASLKSTPPSS--IMSLREKFD------------- 102
IVFEG+DG GK+ + K L +K+ P S ++ RE
Sbjct: 5 FIVFEGIDGSGKTTQINILYKNLLQHNRIKNQPAGSEYVLLTREPGGTATSELIRNILLN 64
Query: 103 -AHDSLLRRAYYSLGNYIAAQDIKQDLQ-----KQPVVMDRFWHSTSAYGMANELVKNSD 156
A+D L R L AQ +++ ++ + V+ DRF S+ AY + D
Sbjct: 65 PANDKLCARTEALLYAAARAQHVEERIRPALSSGKIVICDRFIDSSLAY---QGYGRGQD 121
Query: 157 LKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNA-----K 211
L + + + +KPDL I L + L+RL+ R+ +E++ L+ A +
Sbjct: 122 LSFLHNLNQLAAGG---LKPDLTILLDLPVGAALKRLNNRQVSGIEKDRLESEAVSFYER 178
Query: 212 FRE-----LLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN-LP 253
RE T I N V N+++ +++ S+ I++ + N LP
Sbjct: 179 VREGYLKIAGTGIDNNSAGSGGYLVVNADQELNKVSDRIIDGVGNCLP 226
>gi|290558929|gb|EFD92316.1| dTMP kinase [Candidatus Parvarchaeum acidophilus ARMAN-5]
Length = 205
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 32/209 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAK-----KLKASLKSTPPSSIMSLREK--FDAHDSLLRRAY 112
IV EG+D GK S + + LK L P + I+ K + ++ RA
Sbjct: 5 FIVIEGIDNAGKGTQSTLLTQHLRENGLKVVLTKEPTNGILGGLSKAALNKEINISGRAL 64
Query: 113 YSLGNYIAAQDIKQDLQKQ-----PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
L A I+ +++ V+ DR++ ST AYG + + Y
Sbjct: 65 QLLFCADRAHHIETEIEPMMSKGLTVICDRYFFSTLAYGFVSGIN--------------Y 110
Query: 168 SWPK----DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM 223
W + + KPDL IYL + + L R+ ++ L + ++K +K R+ +I +
Sbjct: 111 KWLRSVNINFRKPDLGIYLDLDPKVSLSRMPKQDGIQLFDT-IQKISKVRQAYISISKEF 169
Query: 224 NNPELVFVDNSEKSVHESSNDIVELIHNL 252
+ + V + S V + N IV+ N+
Sbjct: 170 HLKK-VDANGSVSEVSQKINKIVDKFLNI 197
>gi|422301986|ref|ZP_16389350.1| Thymidylate kinase [Microcystis aeruginosa PCC 9806]
gi|389788891|emb|CCI15170.1| Thymidylate kinase [Microcystis aeruginosa PCC 9806]
Length = 207
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 45/214 (21%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMS--LRE------------- 99
IVFEG+DG G S ++ + + KA L P ++ +RE
Sbjct: 5 FIVFEGIDGSGTSTQAKLLQEYFFKRGEKAVLSPEPSEGVIGRLIREIMQTNLISIQDQN 64
Query: 100 KFDAHDSLL---RRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSD 156
+FD + L R Y+ ++ + Q Q V+ R++ S+ AY N
Sbjct: 65 QFDRQMAYLFAADRHYHLYNDHDGVFKLIQQEQTH-VITTRYYFSSLAYNGNN------- 116
Query: 157 LKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL 216
P+E I + PDLVIY+ V I L R+ R + E + +K K R++
Sbjct: 117 ---PEELAFIRQLNQHFPNPDLVIYIDVLPDISLARIKNRAITEVYEKQ-EKLMKVRQMF 172
Query: 217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVELIH 250
I++ + DN + ND +E +H
Sbjct: 173 LQIFKE-------YKDN---CLQLDGNDTIEHLH 196
>gi|296242887|ref|YP_003650374.1| thymidylate kinase [Thermosphaera aggregans DSM 11486]
gi|296095471|gb|ADG91422.1| thymidylate kinase [Thermosphaera aggregans DSM 11486]
Length = 203
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 52/217 (23%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYI 119
IV EG+DG GK+ T+AK L KS +I + ++ DSL+ +A G+Y
Sbjct: 9 FIVLEGIDGAGKT----TLAKMLIDKFKSKGLDAIYT----YEPTDSLIVKA--VKGDYS 58
Query: 120 AAQDIKQDL--------------------QKQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
+D D + V+ DR+++S+ AY S +
Sbjct: 59 PYRDAYIDALAFALDRLIHVKKLILPMLGKGVTVISDRYFYSSIAY--------QSAMGA 110
Query: 160 PDEDDDIYSWPKDL----MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL 215
P Y W ++ ++PDL IYL + + + RRK E ++ +F E
Sbjct: 111 P------YEWVAEVNKYALRPDLAIYLDIPPEVAID---RRKGLPSRFPEFEER-EFLEK 160
Query: 216 LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
+ Y+ M + L+ ++ + + ++++E I +L
Sbjct: 161 VRQYYKRMVSEGLLVEVDATRKLQTVYSEVIEKIRSL 197
>gi|337754638|ref|YP_004647149.1| thymidylate kinase [Francisella sp. TX077308]
gi|336446243|gb|AEI35549.1| Thymidylate kinase [Francisella sp. TX077308]
Length = 204
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 23/152 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPS-----------SIMSLREKFDAH 104
IV EGLDG GKS + K L A++ + P ++ E+ A
Sbjct: 4 FIVIEGLDGAGKSTAIGIIKKYLDSRSLATVYTREPGGTKVAEEIRALALKDCEEEMVAS 63
Query: 105 DSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
D+ L Y S ++ A IK L+ VV DRF+ S+ AY + L +E
Sbjct: 64 DTELLLMYASRVQHVEAL-IKPALESNLHVVSDRFYWSSMAYQGGGRELGFDKLNALNE- 121
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSR 195
++ KD +PDL IYL + A+ L R +
Sbjct: 122 ----TFLKDC-QPDLTIYLDIDPAVGLARAGK 148
>gi|422441757|ref|ZP_16518566.1| thymidylate kinase [Propionibacterium acnes HL037PA3]
gi|422473081|ref|ZP_16549562.1| thymidylate kinase [Propionibacterium acnes HL037PA2]
gi|422573365|ref|ZP_16648927.1| thymidylate kinase [Propionibacterium acnes HL044PA1]
gi|313835739|gb|EFS73453.1| thymidylate kinase [Propionibacterium acnes HL037PA2]
gi|314928412|gb|EFS92243.1| thymidylate kinase [Propionibacterium acnes HL044PA1]
gi|314970109|gb|EFT14207.1| thymidylate kinase [Propionibacterium acnes HL037PA3]
Length = 215
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 90/223 (40%), Gaps = 28/223 (12%)
Query: 46 NDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSSIMS--LR 98
D+ + G D +V EG DG GK+ S+ + + L A + P S + +R
Sbjct: 2 TDRQTMTGCDLGGVFVVLEGGDGAGKTTQSRLLDQWLTAEGVPHLMTREPGDSWLGQRIR 61
Query: 99 EKFDAHDS--LLRRAYYSLGNYIAAQDIKQDL-----QKQPVVMDRFWHSTSAYGMANEL 151
E + DS + RA L N AQ + + + + + VV DR+ ST AY A +
Sbjct: 62 ELVLSPDSGPICSRAEALLYNADKAQHVDEVVIPALREGRVVVCDRYVDSTIAYQGAGRV 121
Query: 152 VKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE--LKKN 209
+ P+E + SW + PD+ + L V +++ + +E L+
Sbjct: 122 LD------PNEVAQLASWATVGLVPDVTVLLDVDPCEGTAKIAAKDRLEAAGDEFHLRVR 175
Query: 210 AKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
F L +P+ V N+ K+ E S I + L
Sbjct: 176 QHFLSLAAA------HPQRYLVLNARKTREEISEAICHRVAGL 212
>gi|444920583|ref|ZP_21240424.1| Putative thymidylate kinase [Wohlfahrtiimonas chitiniclastica SH04]
gi|444508402|gb|ELV08573.1| Putative thymidylate kinase [Wohlfahrtiimonas chitiniclastica SH04]
Length = 175
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYI 119
I EG+DG GK+ + +A+ L A TP + A D + Y L +
Sbjct: 5 FITIEGIDGVGKTSLGKRLAQFLDAEFIQTPYFADH-------AKDDYEDKFTYYLSDLK 57
Query: 120 AAQD-IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDL 178
Q + + L + +V DR+ HST AY L D + + +L+ PD+
Sbjct: 58 KIQPLLNEKLLNKSIVCDRYLHSTVAY----------QTNLHDVEPLFERY--NLLVPDV 105
Query: 179 VIYLTVSE-AIRLQRLSRRK 197
I LT+ + +RL+RL RK
Sbjct: 106 SILLTIEDNNVRLKRLENRK 125
>gi|272761198|gb|ACZ95828.1| thymidylate kinase [Jujube witches'-broom phytoplasma]
Length = 212
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA--SLKSTPPSSIMS--LREKFDAHDSL--LRRAYY 113
LIVFEGLDG GK+ + +LK L SS + +R+ F + + R Y
Sbjct: 3 LIVFEGLDGSGKTSLIHALQPQLKTPHQLYQGLGSSSLGKEIRDLFLNFQQVEYITRFYL 62
Query: 114 SLGNYIAAQD---IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
SL N Q I Q Q +++DR+ ST AY + K L + +
Sbjct: 63 SLANMSQIQAELIIPQLKNNQLIILDRWLPSTYAYQLF-PFSKEKQQLLSLKQIFKINHE 121
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKN 198
L KPDL+IYL + I R +KN
Sbjct: 122 TILKKPDLLIYLDIDPLIGRTRKKNQKN 149
>gi|402889934|ref|XP_003908252.1| PREDICTED: thymidylate kinase [Papio anubis]
Length = 233
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 92/214 (42%), Gaps = 44/214 (20%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + + L A+ +ST ++S L +K D
Sbjct: 25 RRGALIVLEGMDRAGKSTQSRKLVETLCAAGHRAELLRFPERSTEIGKLLSSYLEKKSDV 84
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +++DR+ S A+ A E K D+
Sbjct: 85 EDHAV-HLLFSANRWEQVPLIKEKLSQGVTLIVDRYAFSGVAFTGAKENFSLDWCKQPDV 143
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE-LL 216
LP KPDL+++L ++L ++R + E E N F+E L
Sbjct: 144 GLP--------------KPDLILFLQ----LQLADAAKRGAYGHERYE---NRAFQERAL 182
Query: 217 TTIYRNMNNPELVF--VDNSEKSVHESSNDIVEL 248
Y+ M + L + VD S KS+ DI L
Sbjct: 183 QCFYQLMRDTTLNWKMVDAS-KSIEAVHEDICAL 215
>gi|400976784|ref|ZP_10804015.1| thymidylate kinase [Salinibacterium sp. PAMC 21357]
Length = 209
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 27/209 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSSIMSL---------REKFDAHD 105
I EG DG GK+ SQ + + L+ + + P + + L R + D
Sbjct: 5 FITLEGGDGVGKTTQSQLLVQWLEEAGHTVVVTREPGGTDLGLELREIVLHRRGEMDPRA 64
Query: 106 SLLRRAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD 164
L Y + + A +K L++ + VV DR+ S+ AY A ++ + DE
Sbjct: 65 EAL--IYAADRAHHIATLVKPALERGEIVVQDRYIDSSEAYQGAGRVLGS------DEVR 116
Query: 165 DIYSWPKDLMKPDLVIYLTVSEAIRLQRL--SRRKNFTLEENELKKNAKFRELLTTIYRN 222
D+ W + PD+ + L + +RL +R + LE + +A+ RE + R
Sbjct: 117 DLSLWAAQNLLPDVTVLLDLDPVDSRKRLDSARTRYDRLEAEKHDFHARVREAF--LERA 174
Query: 223 MNNPELVFVDNSEKSVHESSNDIVELIHN 251
P+ + V ++ + E + I E IHN
Sbjct: 175 AQEPDRILVVDAARDRDEIATVIRERIHN 203
>gi|444323131|ref|XP_004182206.1| hypothetical protein TBLA_0I00220 [Tetrapisispora blattae CBS 6284]
gi|387515253|emb|CCH62687.1| hypothetical protein TBLA_0I00220 [Tetrapisispora blattae CBS 6284]
Length = 242
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 90/216 (41%), Gaps = 38/216 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL----------------KASLKSTPPSSIMS---LREK 100
LI+FEGLD GK+ S+ + K L K +STP +++ + +
Sbjct: 6 LILFEGLDRTGKTTQSEALLKYLNLQGDQSSSSKRCELIKFPERSTPIGKLINNYLVDKS 65
Query: 101 FDAHDSLLRRAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKL 159
F D + +S + + IK LQK V++DR+ S AY +A + + D
Sbjct: 66 FKLPDQSI-HLLFSSNRWELTEQIKSSLQKGNDVLLDRYVFSGIAYSLAKD-TERMDF-- 121
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRL-QRLSRRKNFTLEENE-----LKKNAKFR 213
D S L+KPDL I+LT I +++ R F E E LK AKF
Sbjct: 122 ----DWCLSPDIGLIKPDLTIFLTTDSDISTSNQINNRSGFGAERYEKSDFQLKVKAKFD 177
Query: 214 ELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
+ +++ N ++ SS+ I L+
Sbjct: 178 IVFNYFFKDYTKSSSATTSN----MYTSSDGITTLL 209
>gi|429123165|ref|ZP_19183698.1| thymidylate kinase [Brachyspira hampsonii 30446]
gi|426280978|gb|EKV57981.1| thymidylate kinase [Brachyspira hampsonii 30446]
Length = 203
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 30/157 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYS----- 114
LIV EG+DG GKS ++ L +L S SI + + S LR + S
Sbjct: 5 LIVLEGIDGSGKS----SIGMMLTDTLNSLGIKSIYTFEPTHAYYGSKLRESMLSKDLKP 60
Query: 115 ---LGNYIA--AQDIKQDLQ-----KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD 164
L +IA + IK ++ +V+DR+ +S+ AY A + K
Sbjct: 61 EEELSLFIADRKEHIKHMIKPAINDGYVIVLDRYIYSSIAYQGAKGIDKEY--------- 111
Query: 165 DIYSWPKD-LMKPDLVIYLTVSEAIRLQRLSRRKNFT 200
IY+ KD +++PD+V L + L R+ ++ F
Sbjct: 112 -IYNLHKDFILQPDIVFILHLDIETALNRIMEKRGFV 147
>gi|49456925|emb|CAG46783.1| DTYMK [Homo sapiens]
Length = 212
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 45/208 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + + L A+ +ST ++S L++K D
Sbjct: 4 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 63
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D +S + IK+ L Q +V+DR+ S A+ A E K D+
Sbjct: 64 EDHSA-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV 122
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
LP KPDLV++L ++L ++R F E E N F+E
Sbjct: 123 GLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NGAFQERAL 161
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
+ + N ++V S ++VHE
Sbjct: 162 RCFHQLMKDTTLNWKMVDASKSIEAVHE 189
>gi|365759898|gb|EHN01658.1| Cdc8p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 218
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 85/215 (39%), Gaps = 48/215 (22%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL--KASLKSTPPSS--IMSLREKFDAHDSL-----LRR 110
LI+ EGLD GK+ + KKL L P S I L ++ DSL
Sbjct: 6 LILIEGLDRTGKTTQCNILYKKLLPNCELIKFPERSTRIGGLINQYLTDDSLQLSDQAIH 65
Query: 111 AYYSLGNYIAAQDIKQD-LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
+S + +K+ L+ + +VMDR+ +S AY A + DL + D
Sbjct: 66 LLFSANRWEMVDGMKKALLEGKNIVMDRYVYSGVAYSAAKK-TDGMDLNWCLQPD----- 119
Query: 170 PKDLMKPDLVIYLTVS----------------EAIRLQRLSRRKNFTLEENELKKNAKFR 213
L+KPDL ++L++ E ++ Q+ + TL ENE+K+
Sbjct: 120 -IGLLKPDLTLFLSIQDVNSNAGKDGFGEERYETLKFQKQVKHTFITLLENEMKR----- 173
Query: 214 ELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVEL 248
+ + VD K +HE I E+
Sbjct: 174 ----------GDESIKIVDVGNKGIHEVEALIWEI 198
>gi|359767090|ref|ZP_09270883.1| thymidylate kinase [Gordonia polyisoprenivorans NBRC 16320]
gi|378718987|ref|YP_005283876.1| thymidylate kinase Tmk [Gordonia polyisoprenivorans VH2]
gi|359315464|dbj|GAB23716.1| thymidylate kinase [Gordonia polyisoprenivorans NBRC 16320]
gi|375753690|gb|AFA74510.1| thymidylate kinase Tmk [Gordonia polyisoprenivorans VH2]
Length = 219
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 19/182 (10%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMSL-----REKFDAHDSLLRR 110
LI EGLDG GK+ + ++ + A T P SL E LR
Sbjct: 4 LIAVEGLDGAGKNTLVTGLVRRWRERGVAVATVTFPRYHQSLFADVAAEALHGEHGDLRE 63
Query: 111 AYYSLG------NYIAAQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLPDED 163
+ Y++ AA +I+ L+ VV+ DR+ S +AY A L +++D ++
Sbjct: 64 SVYAMALLFALDRSAAAPEIRAALESNDVVVADRYVASNAAYSAAR-LAQSADGEVVRWV 122
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRR--KNFTLEENELKKNAKFRELLTTIYR 221
D+ DL +PD ++L VS + + R R + T + +++A + + YR
Sbjct: 123 HDLEFGRLDLPRPDHTLFLAVSADVAMSRAQARSAGDPTRPRDHYERDADLQRRVDATYR 182
Query: 222 NM 223
+
Sbjct: 183 EL 184
>gi|189499981|ref|YP_001959451.1| dTMP kinase [Chlorobium phaeobacteroides BS1]
gi|189495422|gb|ACE03970.1| dTMP kinase [Chlorobium phaeobacteroides BS1]
Length = 217
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 78/170 (45%), Gaps = 33/170 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA------HDSLLRRAY- 112
LI FEG+DG GKS T KKLK L +++LRE + LL +
Sbjct: 2 LITFEGIDGAGKS----TQVKKLKKYLVEK-GREVLTLREPGGTVVAEKIRELLLESKHD 56
Query: 113 -YSLGNY---------IAAQDIKQDLQKQPV-VMDRFWHSTSAY-GMANELVKNSDLKLP 160
+G + Q I +L+K V ++DRF+ ST+AY G L DL +
Sbjct: 57 ITPMGELLLFSASRAELVQQVILPELEKSKVIILDRFFDSTTAYQGYGRGL----DLNML 112
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL--EENELKK 208
+ +DI ++ ++PDL +L +S L R K+ L E NE+ +
Sbjct: 113 QKINDISTFG---LQPDLTFFLDISPEDALIRKFSEKSLPLAFENNEMDR 159
>gi|385301485|gb|EIF45673.1| thymidylate kinase [Dekkera bruxellensis AWRI1499]
Length = 206
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 47/219 (21%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL- 115
+ PLI EGLD GKS + + ++L+ S +S ++ E+ A L+
Sbjct: 2 RAPLIAIEGLDRSGKSTQTLKLVRRLQDSXRSV---KLLKFPERTTAIGKLIDXYLKDKK 58
Query: 116 -------------GNYIAAQDIKQDL--QKQPVVMDRFWHSTSAY----GMANELVKNSD 156
N QD BL + VV+DR+ +S AY G+ + N D
Sbjct: 59 XKLSDESVHLLFSANRWELQDKIIBLLTNQSXVVVDRYVYSGVAYSGAKGLKFQWCLNPD 118
Query: 157 LKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKN--AKFRE 214
L +P KPD+ I+L ++ +++ S EE+E +K A+F++
Sbjct: 119 LGMP--------------KPDVTIFLKFNDMLQVTTRSGFGEERYEESEFQKKVCAQFKK 164
Query: 215 LLT-TIYRNMNNPELVFVDN-SEKSVHESSNDIVELIHN 251
+ + N+N VDN S + VH+ ++VE + N
Sbjct: 165 FEGFSEWHNIN------VDNKSIEXVHDEIWNLVEPVIN 197
>gi|448510102|ref|XP_003866278.1| Cdc8 protein [Candida orthopsilosis Co 90-125]
gi|380350616|emb|CCG20838.1| Cdc8 protein [Candida orthopsilosis Co 90-125]
Length = 224
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 23/201 (11%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-KASLKSTP--PSSIMSL------REKFDAHDSLLRR 110
LI+ EGLD GKS + +A K K+ L P +SI L ++F D
Sbjct: 6 LILIEGLDRSGKSTQASILASKFPKSKLIKFPDRSTSIGKLINEYLTNKQFQLSDQ-SAH 64
Query: 111 AYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS- 168
+S + ++I L Q V++DR+ +S AY +A NS + D S
Sbjct: 65 LLFSANRWELNKEIIDLLNQGYFVILDRYIYSGIAYTLAKHKHTNSTISQEDGTKTNLSS 124
Query: 169 --W----PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-NAKFRELLTTIYR 221
W K L KPDL ++LT++ + +S RK + E E+ + ++ ++ I
Sbjct: 125 VEWLLSPDKGLPKPDLTMFLTLN----MDEISSRKGWGDERYEMVEFQSRVKQCFLEILD 180
Query: 222 NMNNPELVFVDNSEKSVHESS 242
+P + VD KS+ + S
Sbjct: 181 EQKDPGVKIVDVGNKSIEQVS 201
>gi|297669947|ref|XP_002813145.1| PREDICTED: thymidylate kinase isoform 1 [Pongo abelii]
Length = 212
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 95/226 (42%), Gaps = 49/226 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + + L A+ +ST ++S L++K D
Sbjct: 4 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 63
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +V+DR+ S A+ A E K D+
Sbjct: 64 EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV 122
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
LP KPDLV++L ++L ++R F E E N F+E
Sbjct: 123 GLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NRAFQERAL 161
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHES----SNDIVELIHNLPM 254
+ + N ++V S ++VHE S D++ P+
Sbjct: 162 WCFHQLMRDTTLNWKMVDASKSIEAVHEDIRMLSEDVICTATEKPL 207
>gi|145505513|ref|XP_001438723.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124405895|emb|CAK71326.1| unnamed protein product [Paramecium tetraurelia]
Length = 216
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 26/198 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS-----IMS--LREKFDAHDSLLRRAY 112
I EGLD GKS ++ +++KL A S P + I+S LR + D ++
Sbjct: 17 FIALEGLDKSGKSTQAKLLSQKLNAKKVSFPDRTTQLGLIISDYLRGNKNMSDEVI-HLL 75
Query: 113 YSLGNYIAAQDIKQDLQKQP-VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK 171
+S + I + LQ +V DR+ +S A+ A L K PD
Sbjct: 76 FSANRWEQHTSILKQLQDGTNIVSDRYAYSGVAFSAAKGLPIEW-CKAPDA--------- 125
Query: 172 DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFV 231
L++PD+ YLT ++ LS+R ++ E+ +N+ F++ + + + + E +
Sbjct: 126 GLIQPDMTFYLTAP----IEELSKRGDYG---KEIYENSSFQQKVGSFFDQLALEENFYK 178
Query: 232 DNSEKSVHESSNDIVELI 249
++ KS+ E +I+ I
Sbjct: 179 IDALKSIDEIQAEILNRI 196
>gi|70606679|ref|YP_255549.1| thymidylate kinase [Sulfolobus acidocaldarius DSM 639]
gi|449066902|ref|YP_007433984.1| dTMP kinase [Sulfolobus acidocaldarius N8]
gi|449069174|ref|YP_007436255.1| dTMP kinase [Sulfolobus acidocaldarius Ron12/I]
gi|76363220|sp|Q4JAC4.1|KTHY_SULAC RecName: Full=Probable thymidylate kinase; AltName: Full=dTMP
kinase
gi|68567327|gb|AAY80256.1| thymidylate kinase [Sulfolobus acidocaldarius DSM 639]
gi|449035410|gb|AGE70836.1| dTMP kinase [Sulfolobus acidocaldarius N8]
gi|449037682|gb|AGE73107.1| dTMP kinase [Sulfolobus acidocaldarius Ron12/I]
Length = 194
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 47/202 (23%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL--------KASLKSTPPSS-IMSLREKFDAHDSL--- 107
+I FEG+DG GK+ S+ + +KL K L S P S I+ L E+ D +
Sbjct: 3 IISFEGIDGSGKTTISKIIYEKLLIEIGSNKKIILTSEPFSQEIIKLIEEIGWKDPISLA 62
Query: 108 ----LRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAY----GMANELVKNSDLKL 159
RAY+ N + Q+ + ++MDR+ ST AY G+ ++N +
Sbjct: 63 LLFTADRAYHL--NLLFKQN------PEIIIMDRYIDSTIAYQSSLGIDENWIRNLNKYF 114
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN-FTLEENELKKNAKFRELLTT 218
P+ PDL I L + + R+ + + F +E ++ +K RE
Sbjct: 115 PE--------------PDLTILLDLKPETAIARIKNKVDKFNFDE-KISTLSKVREKYLE 159
Query: 219 IYRNMNNPELVFVDNSEKSVHE 240
+ + N +V N+EKS+ E
Sbjct: 160 LAKRNNKIRIV---NAEKSIDE 178
>gi|408405230|ref|YP_006863213.1| thymidylate kinase [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408365826|gb|AFU59556.1| putative thymidylate kinase [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 197
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 34/161 (21%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLK----------STPPSSIMSLREKFDA--- 103
K +IV EG D GK+ S+ +A+ LK K +TP + +R D
Sbjct: 4 KGKIIVLEGTDKAGKTTQSRMLAEALKVLGKVCVIIDFPDYTTPIGT--EIRAFLDGRRD 61
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDLQKQP-VVMDRFWHSTSAYGMANEL----VKNSDLK 158
+ + ++ +S + ++I+ ++ VVM+R+W S YG AN + + N D
Sbjct: 62 YPAEVKHLLFSANRWEKKKEIESMVENGTIVVMNRYWQSNLIYGAANGMDTSWLLNLDKG 121
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF 199
LP+E DLVI + V+ +I +R + F
Sbjct: 122 LPEE--------------DLVIIILVNPSISTKRAESQDAF 148
>gi|260893950|ref|YP_003240047.1| thymidylate kinase [Ammonifex degensii KC4]
gi|260866091|gb|ACX53197.1| thymidylate kinase [Ammonifex degensii KC4]
Length = 202
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 91/210 (43%), Gaps = 40/210 (19%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKST-----PPSSIM--SLREKFDAHDSLLRRAYY 113
IV EG+DG GK+ ++ +A+KL+ + P + + ++RE + L A
Sbjct: 6 IVLEGIDGVGKTTQARILAQKLREQGREVVEVREPGGTRLGEAIRELLQ-KEELAPWAEA 64
Query: 114 SLGNYIAAQD------IKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKL-PDEDDD 165
L ++A++ IK L K VV+ DRF ST AY L L PD+
Sbjct: 65 CL--FLASRAQLVEEVIKPALAKGKVVVGDRFSLSTLAY--------QGALGLEPDKLAQ 114
Query: 166 IYSWPKDLMKPD--LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM 223
+ SW ++PD LVI L EA L+R K EE K E++ Y N+
Sbjct: 115 LNSWVTGGLEPDLTLVIDLKAEEA-----LARGKGDLREEIRQKL-----EIVRERYLNL 164
Query: 224 NNPEL--VFVDNSEKSVHESSNDIVELIHN 251
V V + + SV E S I L+
Sbjct: 165 AKERAAKVLVVDGQGSVEEVSRRIWALVEE 194
>gi|330825750|ref|YP_004389053.1| thymidylate kinase [Alicycliphilus denitrificans K601]
gi|329311122|gb|AEB85537.1| Thymidylate kinase [Alicycliphilus denitrificans K601]
Length = 218
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 27/145 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS---TPPSSIMSLREKF------DAHDSLLRR 110
I FEG+DG GKS +T+A+ L+A+ +S T L EK DA D+L
Sbjct: 6 FITFEGIDGAGKSSHIETLARALRAAGRSVTLTREPGGTPLAEKLRALLLNDAMDALTE- 64
Query: 111 AYYSLGNYIAAQD-----IKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPD--- 161
+L + A +D I L + + V+ DRF +T AY A + DL++
Sbjct: 65 ---TLLAFAARRDHLCRVIGPALARGEAVLCDRFTDATFAYQGAG---RGFDLRVLSYME 118
Query: 162 --EDDDIYSWPKDLMKPDLVIYLTV 184
I P +++PDL ++ V
Sbjct: 119 RLAQTGIGLGPDSMLEPDLTLWFDV 143
>gi|315049351|ref|XP_003174050.1| thymidylate kinase [Arthroderma gypseum CBS 118893]
gi|311342017|gb|EFR01220.1| thymidylate kinase [Arthroderma gypseum CBS 118893]
Length = 237
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 94/206 (45%), Gaps = 31/206 (15%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTV----------AKKLKASLKSTPPSSIMS--LREKFDA 103
R+ L+V EGLD GKS + AK ++ ++T +++ LR +
Sbjct: 13 RRGALVVVEGLDRAGKSTQCTRLHQFLVDQGHKAKYIRFPDRTTSIGKMINQYLRAEIQL 72
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
D + +S + AA I+QD++ V++DR+ +S + Y A E N +L+L
Sbjct: 73 DDHAV-HLLFSANRWEAAAQIRQDIEAGITVIVDRYSYSGAVYSAAKE---NKELQLD-- 126
Query: 163 DDDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKKNAKFRELLTTI 219
++W + L +PD+ +L +S + + R + E E + + +L ++
Sbjct: 127 ----WAWRPEVGLPRPDIWFFLNISTEV----AAARGGYGTERYETVNLQQRVGKLFLSL 178
Query: 220 YRNMNNPELVFVDNSEKSVHESSNDI 245
N ++ VD + + + E S+DI
Sbjct: 179 SGLKGNEDMRIVD-AGREMDEISSDI 203
>gi|238020860|ref|ZP_04601286.1| hypothetical protein GCWU000324_00755 [Kingella oralis ATCC 51147]
gi|237867840|gb|EEP68846.1| hypothetical protein GCWU000324_00755 [Kingella oralis ATCC 51147]
Length = 210
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY-SWPKDLMKPDLVIYLTVSEAIRLQ 191
VV DRF +T AY + LPD +I +W + +KPDL I L V A+ LQ
Sbjct: 91 VVSDRFTDATFAY-------QGGGRGLPDGQIEILENWVQGSLKPDLTILLDVPLAVSLQ 143
Query: 192 RLSR-RKNFTLEENELKKNAKFRELLTTIYRNMNNPE--LVFVDNSEKSV 238
R+ R R+ E+ E + RE + R PE V N +K+V
Sbjct: 144 RIERSREKDRFEQEEADFFTRVRE--AYLRRAAAAPERYAVVDSNRDKAV 191
>gi|126338564|ref|XP_001362301.1| PREDICTED: thymidylate kinase-like isoform 1 [Monodelphis
domestica]
Length = 212
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 55/229 (24%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKAS-LKSTPPSSIMSLREKFDAHDSLLR----- 109
R+ LIV EG+D GK+ T +KL A+ L+S P+ ++ E+ LL
Sbjct: 4 RRGALIVLEGMDRAGKT----TQGRKLVAALLQSGHPAELLRFPERSTEIGKLLGSYLEK 59
Query: 110 ---------RAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANE-----LVKN 154
+S + IK+ L + +V+DR+ S A+ A E K
Sbjct: 60 KKNMEDHTVHLLFSANRWEQVPLIKEKLSRGVTLVVDRYAFSGVAFTSAKENFSLDWCKQ 119
Query: 155 SDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214
D+ LP KPD++++L +S ++R +F NE +N F+E
Sbjct: 120 PDVGLP--------------KPDVILFLQLSSV----EAAKRGDFG---NERYENNTFQE 158
Query: 215 -LLTTIYRNMNNPELVF--------VDNSEKSVHESSNDIVELIHNLPM 254
L Y+ M + L + +++ K ++ S + ++++ +P+
Sbjct: 159 KALQRFYQLMKDDSLNWKTIDASKNIEDLHKEIYSLSEETIQMVQEMPV 207
>gi|4974|emb|CAA46698.1| thymidylate kinase [Schizosaccharomyces pombe]
Length = 210
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 40/213 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP----PSSIMSLREKFDAH--------DSL 107
LIV EGLD GKS Q + KL ++K P ++ +K D + D +
Sbjct: 9 LIVIEGLDRSGKSTQCQLLVDKLILNMKRLKLFKFPDRTTAIGKKIDDYLTESVQLNDQV 68
Query: 108 LRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
+ +S + + + + Q+ ++DR+ S A+ A L K PD
Sbjct: 69 I-HLLFSANRWEPSIYYRANQQRCNCILDRYAFSGIAFSAAKGL-DWEWCKSPD------ 120
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLS----RRKNFTLEENELKK----NAKFRELLTTI 219
+ L +PDLVI+L V I R R + ++E LK +FRE
Sbjct: 121 ---RGLTRPDLVIFLNVDPRIAATRGQYGEERYEKIEMQEKVLKNLQRLQKEFRE----- 172
Query: 220 YRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
E + +D S ++ + + IV+L+ N+
Sbjct: 173 ----EGLEFITLDASSYALEDVDSQIVDLVSNV 201
>gi|34497089|ref|NP_901304.1| deoxyguanosine kinase [Chromobacterium violaceum ATCC 12472]
gi|34102946|gb|AAQ59310.1| deoxyguanosine kinase [Chromobacterium violaceum ATCC 12472]
Length = 211
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 21/146 (14%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS---IMSLREKFDAHDSLLRRAYYSLGN 117
+V EG G GKS ++ +++ LK+ P++ + AH + ++
Sbjct: 7 VVVEGPIGSGKSSLARRLSEYWGVQLKAEDPAANPFLPRFYRNMPAHALSTQLSFLLQRA 66
Query: 118 YIAAQDIKQDLQKQPVVMDRFWHSTSAYGMAN----ELV---KNSDLKLPDEDDDIYSWP 170
IA + I +LQ P+V D + + + N EL + + L LP+ +P
Sbjct: 67 DIAREMISGELQAAPLVSDFLFEKDALFARLNLDEHELAIYQRLARLALPE-------YP 119
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRR 196
PDLVIYL SE I LQR++ R
Sbjct: 120 V----PDLVIYLQASEDILLQRVAAR 141
>gi|383865532|ref|XP_003708227.1| PREDICTED: putative thymidylate kinase 251L-like [Megachile
rotundata]
Length = 212
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 40/216 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR---------- 109
LIVFEG D GKS + + + LK K P+ + ++ +L+
Sbjct: 8 LIVFEGCDRAGKSTQVKMLIEALK---KRNIPTEARAFPDRTTPTGTLINNFLCNKLELP 64
Query: 110 ----RAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD 164
+S + +DI + LQ V++DR+ S +AY A + L E D
Sbjct: 65 PETTHLLFSANRWEVKEDIIKSLQNGVTVIIDRYAGSGAAYTAA---LSGKCLTWCKEAD 121
Query: 165 DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN 224
K L PDLVI L VSE + R N+ E E N++F++ + Y +
Sbjct: 122 ------KGLPSPDLVILLKVSEKTQCS----RSNWGSERYE---NSEFQKRVALNYEKLI 168
Query: 225 NPELVFVDNSEKSVHESSN------DIVELIHNLPM 254
+D + +++ S + V+ + NLP+
Sbjct: 169 EKTWSSIDANGETLEIHSQVLKQVLNTVQKVKNLPI 204
>gi|397667017|ref|YP_006508554.1| thymidylate kinase [Legionella pneumophila subsp. pneumophila]
gi|395130428|emb|CCD08668.1| thymidylate kinase [Legionella pneumophila subsp. pneumophila]
Length = 212
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 92/220 (41%), Gaps = 42/220 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAY------- 112
LIV EGL+G GKS A L L S S ++ RE + R+
Sbjct: 8 LIVIEGLEGAGKS-----TAVNLVVELLSQKKISTITTREPGGTRIGEILRSIIKNPEYN 62
Query: 113 ------------YSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
Y+ + Q IK L + Q V+ DRF ST AY + D+++
Sbjct: 63 NVLDDRSELLLLYAARIQLIEQVIKPALNEGQWVIADRFELSTLAYQGGG---RKMDMRV 119
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTI 219
+E + ++ KPDL +YL ++ + + R R F E E + +F +
Sbjct: 120 INE---LSNFCLKGFKPDLTLYLDINPELGMIRAKSRGKFDRIEQE---SIEFFHRIHDT 173
Query: 220 YRNM--NNPELVFVDNSEKSVHESSNDIVELI-----HNL 252
Y + NPE++ +D + +S+ E + I +I HN+
Sbjct: 174 YHILVKQNPEIMMID-ANRSLEEVQSSIQSVIEEFIEHNI 212
>gi|281413072|ref|YP_003347151.1| thymidylate kinase [Thermotoga naphthophila RKU-10]
gi|281374175|gb|ADA67737.1| thymidylate kinase [Thermotoga naphthophila RKU-10]
Length = 197
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 40/206 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSS-------IMSLREKFDAHDSL 107
I FEG+DG GKS + +A+ L + LK P + + L+E+ L
Sbjct: 2 FITFEGIDGSGKSTQIKLLARYLEKRGKRVILKREPGGTETGEKIRKLLLKEEMTPKAEL 61
Query: 108 LRRAYYSLGNYIAAQDIKQDLQKQPVV-MDRFWHSTSAY-GMANELVKNSDLKLPDEDDD 165
+ + +IK+ L + VV +DR+ S+ AY G L K KL D
Sbjct: 62 F---LFLASRNLLVMEIKRYLSEGYVVLLDRYTDSSVAYQGFGRNLGKEIVEKLND---- 114
Query: 166 IYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM-- 223
+ D + PDL Y+ V L R + EL + K RE L +
Sbjct: 115 ---FATDGLVPDLTFYIDVDVETALNR----------KGELNRFEK-REFLERVREGYLV 160
Query: 224 ---NNPELVFVDNSEKSVHESSNDIV 246
+PE + V + ++S+ E D+V
Sbjct: 161 LAKEHPERIVVLDGKRSIEEIHRDVV 186
>gi|403221901|dbj|BAM40033.1| thymidylate kinase [Theileria orientalis strain Shintoku]
Length = 188
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 26/162 (16%)
Query: 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKL-----KASL-----KSTPPSSIMS--LREKF 101
+ R+ IVFEG+D GKS + +++KL K + K TP I+ L+ +
Sbjct: 5 NTRRGKFIVFEGIDRSGKSTQIKLLSQKLVEENIKNQIITFPNKGTPIGRILGDYLKSRD 64
Query: 102 DAHDSLLRRAYYSLGNYIAAQDIKQDLQKQP-VVMDRFWHSTSAYGMANELVKNSDLKLP 160
+ +S + +IKQ L+ V+ DR+ +S +Y + E + +P
Sbjct: 65 ENIPKQALHLLFSANRWEEMNNIKQVLESGTHVITDRYAYSGISYSVGAEGLNFDWCTIP 124
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE 202
D K L++PD+V Y+ I ++ + R +F +E
Sbjct: 125 D---------KGLIQPDVVFYMD----IEPEQTTSRGDFGVE 153
>gi|148270766|ref|YP_001245226.1| dTMP kinase [Thermotoga petrophila RKU-1]
gi|166223125|sp|A5IN77.1|KTHY_THEP1 RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|147736310|gb|ABQ47650.1| thymidylate kinase [Thermotoga petrophila RKU-1]
Length = 197
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 40/206 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSS-------IMSLREKFDAHDSL 107
I FEG+DG GKS + +A+ L + LK P + + L+E+ L
Sbjct: 2 FITFEGIDGSGKSTQIKLLARYLEKRGKRVILKREPGGTETGEKIRKLLLKEEMTPKAEL 61
Query: 108 LRRAYYSLGNYIAAQDIKQDLQKQPVV-MDRFWHSTSAY-GMANELVKNSDLKLPDEDDD 165
+ + +IK+ L + VV +DR+ S+ AY G L K KL D
Sbjct: 62 F---LFLASRNLLVMEIKRYLSEGYVVLLDRYTDSSVAYQGFGRNLGKEIVEKLND---- 114
Query: 166 IYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM-- 223
+ D + PDL Y+ V L R + EL + K RE L +
Sbjct: 115 ---FATDSLVPDLTFYIDVDVETALNR----------KGELNRFEK-REFLERVREGYLV 160
Query: 224 ---NNPELVFVDNSEKSVHESSNDIV 246
+PE + V + ++S+ E D+V
Sbjct: 161 LAKEHPERIVVLDGKRSIEEIHRDVV 186
>gi|50083650|ref|YP_045160.1| polyphosphate-AMP phosphotransferase [Acinetobacter sp. ADP1]
gi|49529626|emb|CAG67338.1| polyphosphate-AMP phosphotransferase [Acinetobacter sp. ADP1]
Length = 474
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 24/170 (14%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYS 114
D++ ++VFEG+D GK + + + K+L +S EK++ L R +
Sbjct: 278 DQRNVIVVFEGMDAAGKGGSIKRIVKRLDPREYDI---FTISAPEKYELRHPYLWRFWTK 334
Query: 115 LGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLM 174
L N DI+ + DR W+ SD++ D+I + KDL
Sbjct: 335 LQN---CSDIR--------IFDRSWYGRVLVERVEAFA--SDIEWQRAYDEINRFEKDLT 381
Query: 175 KPDLV---IYLTVSEAIRLQRLSRR-----KNFTLEENELKKNAKFRELL 216
V I+L++S+ + +R R K F + E++ + AK+ E L
Sbjct: 382 DSQTVIVKIWLSISKEEQEKRFEAREKTPHKRFKITEDDWRNRAKWDEYL 431
>gi|254468053|ref|ZP_05081459.1| deoxyadenosine kinase, putative [beta proteobacterium KB13]
gi|207086863|gb|EDZ64146.1| deoxyadenosine kinase, putative [beta proteobacterium KB13]
Length = 217
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 31/156 (19%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL 115
+KYP IV EG G GKS S+ +++ ++ ++EK D + L + Y ++
Sbjct: 6 KKYPYIVVEGPIGSGKSTLSRMLSENFGSNF----------IKEKAD-QNPFLPKFYKNM 54
Query: 116 GNYI-----------AAQ--DIKQ-DLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
Y A Q DIKQ D + V D F + + N + +LKL
Sbjct: 55 SQYALPTQLFFLFQRAEQINDIKQNDFFHKGTVADFFIYKDPIFAQLN--LDEEELKLYK 112
Query: 162 EDDDIYSWPK-DLMKPDLVIYLTVSEAIRLQRLSRR 196
+ IY + + + KPDLVIYL + +R+ RR
Sbjct: 113 Q---IYQFLELKVPKPDLVIYLQTPVELLKKRVERR 145
>gi|367003062|ref|XP_003686265.1| hypothetical protein TPHA_0F03510 [Tetrapisispora phaffii CBS 4417]
gi|357524565|emb|CCE63831.1| hypothetical protein TPHA_0F03510 [Tetrapisispora phaffii CBS 4417]
Length = 224
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 39/219 (17%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLK---------STPPSSIMSLREKF--DAH 104
++ LI+ EGLD GK+ + + LK ++K + I L + ++
Sbjct: 3 QRGKLILLEGLDRTGKTTQCERLVDILKETMKIEKVKQFKFPNRENEIGKLINGYLTNSS 62
Query: 105 DSLLRRAY---YSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLP 160
+SL +A +S + + +IK L + V++DR+ +S AY +A E V+ D+
Sbjct: 63 NSLSDQAIHLLFSANRWESINEIKNLLNEGYYVILDRYVYSGVAYSLAKE-VEGMDI--- 118
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-----LKKNAKFREL 215
D + K L+KPDL I+LT + + R+ F E E LK KF E+
Sbjct: 119 ---DWCLNCDKGLIKPDLTIFLTNDKTNK-----DREGFGDERYEKIAFQLKVKEKFFEI 170
Query: 216 LTTI---YRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
T I + + L V+ + K++ E + +LI N
Sbjct: 171 FTKIDNYNQETQHSSLAIVNVTNKTIEE----VTDLIAN 205
>gi|227486758|ref|ZP_03917074.1| possible dTMP kinase [Anaerococcus lactolyticus ATCC 51172]
gi|227235228|gb|EEI85243.1| possible dTMP kinase [Anaerococcus lactolyticus ATCC 51172]
Length = 207
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 39/216 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKST---------PPSSIMS--LREKFDAHDSLL 108
IVFEG DG GK+ T+ KK+K L++ P + +S +R +D+ +
Sbjct: 5 FIVFEGPDGSGKT----TIIKKVKELLENKDYSISYYREPGGTSISEKIRSIIIDNDNYM 60
Query: 109 RRA------YYSLGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLPD 161
A + S + A+ I DL++ +V+ DRF S+ Y + ++K
Sbjct: 61 MDAKTEALLFASSRAQLVAEKITPDLKEGKIVICDRFVMSSLLYQGLGRALGVDNIKT-- 118
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFRELLTTI 219
I + +KPDL ++ + L+R +R NF+ + ENE + F + +
Sbjct: 119 ----INDFATGGLKPDLTLFFNIDYKTALER--KRANFSPDRLENE---DFSFHKTIFDG 169
Query: 220 YRNMNN---PELVFVDNSEKSVHESSNDIVELIHNL 252
Y M + E+ VD + KS+ + + D++ +I+ L
Sbjct: 170 YMKMADLYKDEIKKVD-ARKSIEDLTEDVINIIYQL 204
>gi|124027289|ref|YP_001012609.1| thymidylate kinase [Hyperthermus butylicus DSM 5456]
gi|123977983|gb|ABM80264.1| Thymidylate kinase [Hyperthermus butylicus DSM 5456]
Length = 223
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 23/193 (11%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLK-----ASLKSTPPSSIMS------LREKFDAHDSLLR 109
+VFEG+DG G + ++ +A+KL+ L P ++ LR D L
Sbjct: 7 VVFEGIDGAGTTTHARLLAEKLRLLGYCVELVEEPSKDVVGGVIRHMLRHGPFHQDVLA- 65
Query: 110 RAYYSLGNYIAAQDIKQDLQKQP--VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
++ + + +++ LQ + VV DR W S+ AY D D +Y
Sbjct: 66 -LLFAADRLLLQRSLEERLQGRSCIVVSDRSWISSLAYQTCELFPYAVD------ADWVY 118
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNN-- 225
K +PD+++Y+ V I +RL+ R L RE + + ++
Sbjct: 119 IVNKYAWRPDILVYIDVEPLIAFRRLASRGRVRELPETLAALRALRESYRHVIQRVSRVV 178
Query: 226 PELVFVDNSEKSV 238
P +++V+ S V
Sbjct: 179 PVVLWVEGSRNGV 191
>gi|223939277|ref|ZP_03631158.1| dTMP kinase [bacterium Ellin514]
gi|223892109|gb|EEF58589.1| dTMP kinase [bacterium Ellin514]
Length = 213
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 23/158 (14%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKA-----SLKSTPPSSIMSLREKFDAHDSLLRR 110
+K LI FEG +GCGKS + ++L+A + P + + ++ S+
Sbjct: 2 KKGLLISFEGTEGCGKSTQISLLTERLRALGHVIRMVREPGGTPIGEEIRYTLKHSVKNH 61
Query: 111 AYYS-----LGNYIAAQDIKQDLQ-----KQPVVMDRFWHSTSAY-GMANELVKNSDLKL 159
A S L N AQ +++ L+ + +V DR++ ST+AY G L DLKL
Sbjct: 62 AMTSEAELLLMNASRAQLVREVLRPALEAGEIIVCDRYYDSTTAYQGYGRGL----DLKL 117
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ + +PDL + L V + RL+ R+
Sbjct: 118 VQA---VIDFAVGDTRPDLTLLLRVPPEVSAARLASRQ 152
>gi|375266147|ref|YP_005023590.1| thymidylate kinase [Vibrio sp. EJY3]
gi|369841468|gb|AEX22612.1| thymidylate kinase [Vibrio sp. EJY3]
Length = 209
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 89/218 (40%), Gaps = 40/218 (18%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMSLREKFDAHDS 106
K IV EGL+G GKS QTV LK++ TP + M K +
Sbjct: 2 KANFIVIEGLEGAGKSTAIQTVLDTLKSAGIENIVNTREPGGTPLAEKMRALVKEEHEGE 61
Query: 107 LLRRAYYSLGNYIAAQDIKQDLQK------QPVVMDRFWHSTSAYGMANE-----LVKN- 154
L+ L Y A + +++ K Q VV DR S+ AY L+KN
Sbjct: 62 ELQDMTELLLLYAARVQLVENVIKPALANGQWVVGDRHDMSSQAYQGGGRQIDASLMKNL 121
Query: 155 SDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214
D L D KP L +Y+ + I L+R R E K + F E
Sbjct: 122 RDTTLGD------------FKPALTLYMDIDPRIGLERARGRGELDRIE---KMDISFFE 166
Query: 215 LLTTIYRNMNN--PELVFVDNSEKSVHESSNDIVELIH 250
Y ++ N P +V + N+E+S+ + S+DI E ++
Sbjct: 167 RTRERYLDIANSDPSVVVI-NAEQSIEKVSHDIQEALN 203
>gi|157827624|ref|YP_001496688.1| thymidylate kinase [Rickettsia bellii OSU 85-389]
gi|166223110|sp|A8GXQ1.1|KTHY_RICB8 RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|157802928|gb|ABV79651.1| thymidylate kinase [Rickettsia bellii OSU 85-389]
Length = 206
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 23/151 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS------LKSTPPSSIMSLREKFDAHDSL-----L 108
I FEG +G GKS Q + + LK+ + +++ + H L L
Sbjct: 9 FITFEGGEGIGKSTQCQMLYEYLKSQNIPVILTREVGGTNVAEKMREILVHTDLLPMSEL 68
Query: 109 RRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168
+A + +++ + I V+ DRF ST+ Y L+L + + +Y+
Sbjct: 69 LQAMAARYDHMVKKIIPALQAGNIVICDRFIDSTACY---------QGLELENGIELVYN 119
Query: 169 WPKDLM---KPDLVIYLTVSEAIRLQRLSRR 196
KDLM PDL ++ V +I ++R++ R
Sbjct: 120 LHKDLMPPLMPDLTFFIDVESSIAIERINSR 150
>gi|54294285|ref|YP_126700.1| thymidylate kinase [Legionella pneumophila str. Lens]
gi|81601377|sp|Q5WWU9.1|KTHY_LEGPL RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|53754117|emb|CAH15590.1| hypothetical protein lpl1350 [Legionella pneumophila str. Lens]
gi|307610103|emb|CBW99644.1| hypothetical protein LPW_14121 [Legionella pneumophila 130b]
Length = 212
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 42/220 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAY------- 112
LIV EGL+G GKS A L L S S ++ RE + R+
Sbjct: 8 LIVIEGLEGAGKS-----TAVNLVVELLSQKKISTITTREPGGTKIGEILRSIIKNPEYN 62
Query: 113 ------------YSLGNYIAAQDIKQDLQ-KQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
Y+ + Q IK L Q V+ DRF ST AY + D+++
Sbjct: 63 NVLDDRSELLLLYAARIQLIEQVIKPALNVGQWVIADRFELSTLAYQGGG---RKMDMRV 119
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTI 219
+E + ++ KPDL +YL ++ + + R R F E E + +F +
Sbjct: 120 INE---LSNFCLKGFKPDLTLYLDINPELGMIRAKSRGKFDRIEQE---SIEFFHRIHDT 173
Query: 220 YRNM--NNPELVFVDNSEKSVHESSNDIVELI-----HNL 252
Y + NPE++ +D + +S+ E + I +I HNL
Sbjct: 174 YHILVKQNPEIMMID-ANRSLEEVQSSIQSVIEEFIEHNL 212
>gi|16081254|ref|NP_393560.1| thymidylate kinase [Thermoplasma acidophilum DSM 1728]
gi|13629142|sp|Q9HLZ2.1|KTHY_THEAC RecName: Full=Probable thymidylate kinase; AltName: Full=dTMP
kinase
gi|10639227|emb|CAC11229.1| conserved hypothetical protein [Thermoplasma acidophilum]
Length = 193
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 18/146 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMSLREKFDAHDSLLRRAYYS 114
I EG+DG GK+ ++ + L + + P + + A D + ++
Sbjct: 2 FIAIEGIDGAGKTTLARGIGNMLLGEGYRVYMTKEPTDGMENY-----AGDGVELFLKFT 56
Query: 115 LGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAY---GMANELVKNSDLKLPDEDDDIYSWP 170
+ Y ++I + ++ +V+ DR+ S+ AY G+A E NS+ K + D +
Sbjct: 57 INRYAHQREIDRHIKNGEIVICDRYIRSSYAYQFEGIA-EFFGNSE-KAWEWMDSVSEII 114
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRR 196
K ++PD+ IY+ V E ++R+SRR
Sbjct: 115 K--IRPDVQIYVDVDEETAMERISRR 138
>gi|255728491|ref|XP_002549171.1| hypothetical protein CTRG_03468 [Candida tropicalis MYA-3404]
gi|240133487|gb|EER33043.1| hypothetical protein CTRG_03468 [Candida tropicalis MYA-3404]
Length = 222
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 29/212 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL------KSTPPSSIMS--LREKFDAHDSLLRRA 111
LI+ EGLD GKS + +A K +S +STP +++ L K + +
Sbjct: 6 LILIEGLDRSGKSTQASILASKFTSSQLIKFPDRSTPIGKLINEYLTNKSFSLNDQSAHL 65
Query: 112 YYSLGNYIAAQDIKQDLQKQP-VVMDRFWHSTSAYGMANELVKNSDL-------KLPDED 163
+S + Q I++ L K V++DR+ +S AY +A + + + +L D D
Sbjct: 66 LFSANRWELNQQIQELLNKGYFVILDRYIYSGIAYTLAKNEINDESISSGKNSKQLGDVD 125
Query: 164 DDIYSWPKDLMKPDLVI---YLTVSEAIRLQRLSRRKNFTLEENELKK-NAKFRELLTTI 219
W L+ PD + LT+ + L+ +S+RK + E EL++ AK ++ +
Sbjct: 126 -----W---LLAPDKGLPKPDLTLFLTLDLEEISKRKGWGDERYELQQFQAKVKDCFLQV 177
Query: 220 YRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
+ +P + VD EK++ + S + ++I +
Sbjct: 178 L-DTKDPSICIVDVGEKNIDQVSKQLWDIIES 208
>gi|390440007|ref|ZP_10228365.1| Thymidylate kinase [Microcystis sp. T1-4]
gi|389836583|emb|CCI32489.1| Thymidylate kinase [Microcystis sp. T1-4]
Length = 230
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 35/185 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMS--LRE------------- 99
IVFEG+DG G S ++ + + KA L P ++ +RE
Sbjct: 5 FIVFEGIDGSGTSTQAKLLQEYFFKRGEKAVLSPEPSEGVIGRLIREIMQTNLISIQDQN 64
Query: 100 KFDAHDSLL---RRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSD 156
KFD + L R Y+ ++ + Q V+ R++ S+ AY N
Sbjct: 65 KFDRQMAYLFAADRHYHLYNDHDGVFKLIHQEQTH-VITTRYYFSSLAYNCNN------- 116
Query: 157 LKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL 216
P+E + + PDLVIY+ V I L R+ R + E + +K K R++
Sbjct: 117 ---PEEFAFVRQLNQHFPNPDLVIYIDVLPDISLARIKNRAITEVYEKQ-EKLIKVRQMF 172
Query: 217 TTIYR 221
I++
Sbjct: 173 LDIFK 177
>gi|227888765|ref|ZP_04006570.1| thymidylate kinase [Lactobacillus johnsonii ATCC 33200]
gi|227850602|gb|EEJ60688.1| thymidylate kinase [Lactobacillus johnsonii ATCC 33200]
Length = 217
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 34/190 (17%)
Query: 52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS------TPPSSIMSL-------- 97
+G D + LI FEG DG GK+ + K+L SL+ P S +S
Sbjct: 1 MGVDMRGYLITFEGPDGAGKTTVINEIIKQLPQSLQERTLITREPGGSKISENIRTIILD 60
Query: 98 ---REKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVK 153
+E D ++LL Y + + ++ I+ L VV+ DRF S+ AY +
Sbjct: 61 PENKEMDDRTEALL---YAAQRSQHVSEVIRPALAAGKVVLSDRFIDSSLAYQGVGRNLG 117
Query: 154 NSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFT---LEENEL---- 206
++K I + ++PDL I+L + A+ L R+ + + LE+ ++
Sbjct: 118 IEEVK------QINDFGTGGLEPDLTIFLDLDPAVGLARIEKERAGQEDRLEQEKIDFHN 171
Query: 207 KKNAKFRELL 216
K A +RELL
Sbjct: 172 KVYAGYRELL 181
>gi|302388610|ref|YP_003824431.1| thymidylate kinase [Thermosediminibacter oceani DSM 16646]
gi|302199238|gb|ADL06808.1| thymidylate kinase [Thermosediminibacter oceani DSM 16646]
Length = 211
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 82/196 (41%), Gaps = 22/196 (11%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLK---STPPSSIMSLREK-----FDAHDSL 107
RK I EG DG GK+ ++ + + LK+ K ST +L E+ D S
Sbjct: 6 RKGKFITIEGPDGAGKTTQAEKIVQYLKSKGKRVISTREPGGTALGEQLRKVLLDPEGSP 65
Query: 108 LRRAYYSLGNYIAAQDIKQDL-----QKQPVVMDRFWHSTSAY-GMANELVKNSDLKLPD 161
+ A + AQ +++ + + VV DRF S+ AY G A + N L+L
Sbjct: 66 VSNAEALIYAACRAQLLERMVIPALREGFTVVCDRFVDSSLAYQGWARGIGINRILQL-- 123
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYR 221
W PD+ I L V A+ L RL + LE L+ + K RE + R
Sbjct: 124 -----NKWVIGSYWPDITILLDVDPAVSLGRLVGGRKDRLESEALEFHQKVREGYMKV-R 177
Query: 222 NMNNPELVFVDNSEKS 237
M + +D S+ +
Sbjct: 178 EMFPDRIRIIDASQPA 193
>gi|148358930|ref|YP_001250137.1| thymidylate kinase [Legionella pneumophila str. Corby]
gi|296106978|ref|YP_003618678.1| dTMP kinase [Legionella pneumophila 2300/99 Alcoy]
gi|166221751|sp|A5IBP1.1|KTHY_LEGPC RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|148280703|gb|ABQ54791.1| thymidylate kinase [Legionella pneumophila str. Corby]
gi|295648879|gb|ADG24726.1| dTMP kinase [Legionella pneumophila 2300/99 Alcoy]
Length = 212
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 91/219 (41%), Gaps = 40/219 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAY------- 112
LIV EGL+G GKS A L L S S ++ RE + R+
Sbjct: 8 LIVIEGLEGAGKS-----TAVNLVVELLSQKKISTITTREPGGTRIGEILRSIIKNPEYN 62
Query: 113 ------------YSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
Y+ + Q IK L + Q V+ DRF ST AY + D+++
Sbjct: 63 NVLDDRSELLLLYAARIQLIEQVIKPALNEGQWVIADRFELSTLAYQGGG---RKMDMRV 119
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTI 219
+E + ++ KPDL +YL ++ + + R R F E E + +F +
Sbjct: 120 INE---LSNFCLKGFKPDLTLYLDINPELGMIRAKSRGKFDRIEQE---SIEFFHRIHDT 173
Query: 220 YRNM--NNPELVFVDNSE--KSVHESSNDIVE--LIHNL 252
Y + NPE++ +D + + V S ++E + HNL
Sbjct: 174 YHILVKQNPEIMMIDANRPLEDVQSSIQSVIEEFIEHNL 212
>gi|398392850|ref|XP_003849884.1| hypothetical protein MYCGRDRAFT_47065 [Zymoseptoria tritici IPO323]
gi|339469762|gb|EGP84860.1| hypothetical protein MYCGRDRAFT_47065 [Zymoseptoria tritici IPO323]
Length = 220
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 85/196 (43%), Gaps = 32/196 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK-----------STPPSSIMSLREKFDAHDSLL 108
LIVFEGLD GKS + L++ K + I S + +
Sbjct: 10 LIVFEGLDRSGKSTQCARLVDHLRSQGKEVFHQRFPDRTTVIGQMINSYLSGTSSQEDHA 69
Query: 109 RRAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
+S + A++ I+Q +++ VV+DR+++S Y A + N + L
Sbjct: 70 IHLLFSANRWEASESIRQHIERGTTVVVDRYYYSGCVYSAAKQ---NPAMDL-------- 118
Query: 168 SWPK----DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-NAKFRELLTTIYRN 222
+W + L +PDL ++L ++ + ++R F E E ++ + R+L + +
Sbjct: 119 AWCRHPEIGLPRPDLCLFLDIA----AEEAAKRGGFGTERYEKQELQDRVRDLFAELQTH 174
Query: 223 MNNPELVFVDNSEKSV 238
+ E + V ++ +SV
Sbjct: 175 PDEAEDIVVIDAGQSV 190
>gi|391340461|ref|XP_003744559.1| PREDICTED: thymidylate kinase-like [Metaseiulus occidentalis]
Length = 208
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 28/187 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK-----ASLKSTP--PSSIMSLREKFDAH----DSLL 108
LIV EGLD GKS ++T+ K L A L+ P + I + ++ +H D
Sbjct: 7 LIVLEGLDRTGKSTQARTLVKNLNSKGILAELQIFPDRTTQIGKVISEYLSHARDLDDRA 66
Query: 109 RRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
+S + + L+K +V+DR+ S A+ A + + PD
Sbjct: 67 IHLLFSANRWEKKNAMVSKLEKGISLVVDRYAFSGVAFSSAKPGLSQEWCRQPD------ 120
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPE 227
L+KPD+V +LT + L +R + E E N +F++ + Y + +P
Sbjct: 121 ---VGLLKPDVVFFLTADP----ETLKQRGGYGEERYE---NVEFQKRVAAEYSELEDPS 170
Query: 228 LVFVDNS 234
+ VD +
Sbjct: 171 WIRVDAT 177
>gi|393794874|ref|ZP_10378238.1| thymidylate kinase [Candidatus Nitrosoarchaeum limnia BG20]
Length = 193
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 50/211 (23%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA-SLKSTP-------------PSSIMSLREKFD--- 102
+IV EG D GK + +AK LK +K+T S ++ + KF
Sbjct: 2 IIVIEGGDQAGKKTQTALLAKALKQRKIKTTTFSFPDYKTPIGKEISKYLNGKRKFPPQV 61
Query: 103 AHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANEL----VKNSDLK 158
H L + L + + AQ + ++M+R++ S YG+AN + ++N D
Sbjct: 62 IHCLLAANRWEKLNDILNAQS-----KNSVLIMNRYYQSNLIYGLANGMNRKWLENLDSG 116
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVS--EAIRLQRLSRRKNFTLEENELKKNAKFRELL 216
LP K DLVI L VS E+ R ++ +R K +KN +F +
Sbjct: 117 LP--------------KADLVILLDVSQTESFRRKKTNRDK--------FEKNEEFLRNI 154
Query: 217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVE 247
+ IYR + E + ++ K E +I++
Sbjct: 155 SKIYRKIAKKENWKIIDASKPKQEVHKNILQ 185
>gi|346471783|gb|AEO35736.1| hypothetical protein [Amblyomma maculatum]
Length = 214
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 83/211 (39%), Gaps = 35/211 (16%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTP----PSSIMSLREKFDAH------- 104
R+ IVFEG D GKS + +A+ L T P + + D +
Sbjct: 5 RRGLFIVFEGCDRTGKSTQVKLLAEVLAGKGHKTDTIAFPKRTTATGKLLDGYLKESTNL 64
Query: 105 DSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
D +S + AQ I+Q + + V+ DR+ +S A+ A L D +
Sbjct: 65 DDHAVHLLFSANRWQEAQAIRQTVARHTTVICDRYAYSGVAFSAAKSL----DFTWCQQP 120
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM 223
D K L +PDLV Y++ S + L+ R F E E +F+ + Y
Sbjct: 121 D------KGLPEPDLVFYMSASPEV----LNARDGFGTERYE---KVEFQTKVRANYERF 167
Query: 224 -----NNPELVFVDNSEKSVHESSNDIVELI 249
+ V +D S +S+ E DI+ +
Sbjct: 168 AALESGSGRWVNID-SARSIEEVHRDILSCV 197
>gi|91205052|ref|YP_537407.1| thymidylate kinase [Rickettsia bellii RML369-C]
gi|122425994|sp|Q1RJZ6.1|KTHY_RICBR RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|91068596|gb|ABE04318.1| Thymidylate kinase [Rickettsia bellii RML369-C]
Length = 206
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 23/151 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS------LKSTPPSSIMSLREKFDAHDSL-----L 108
I FEG +G GKS Q + + LK+ + +++ + H L L
Sbjct: 9 FITFEGGEGIGKSTQCQMLYEYLKSQNIPVILTREVGGTNVAEKMREILVHTDLLPMSEL 68
Query: 109 RRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168
+A + +++ + I V+ DRF ST+ Y L+L + + +Y+
Sbjct: 69 LQAMAARYDHMVKKIIPALQAGNIVICDRFIDSTACY---------QGLELENGIELVYN 119
Query: 169 WPKDLM---KPDLVIYLTVSEAIRLQRLSRR 196
KDLM PDL ++ V +I ++R++ R
Sbjct: 120 LHKDLMPPLMPDLTFFIDVESSIAIERVNSR 150
>gi|291415046|ref|XP_002723764.1| PREDICTED: thymidylate kinase isoform 1 [Oryctolagus cuniculus]
Length = 212
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 35/210 (16%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + L+A+ +ST ++S L +K +
Sbjct: 4 RRGALIVLEGVDRAGKSTQSRKLVAALRAAGHRAELLRFPERSTEIGKLLSSYLEKKSEV 63
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
D + +S + IK+ L Q +V+DR+ S A+ A E K PD
Sbjct: 64 EDHSV-HLLFSANRWEQVPFIKEKLSQGVTLVVDRYAFSGVAFTSAKENFSLEWCKQPD- 121
Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE-LLTTIYR 221
L +PDLV++L ++L + R F E E + F+E L ++
Sbjct: 122 --------VGLPRPDLVLFLQ----LKLAEAASRGEFGCERYE---SRAFQERALQGFHQ 166
Query: 222 NMNNPELVF--VDNSE--KSVHESSNDIVE 247
M +P L + VD S+ + VHE + E
Sbjct: 167 LMRDPSLNWKMVDASKSIEDVHEEIRALSE 196
>gi|399217927|emb|CCF74814.1| unnamed protein product [Babesia microti strain RI]
Length = 197
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 89/215 (41%), Gaps = 50/215 (23%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPP-----------------SSIMS-LREKF 101
IV EGLD GKS TV K LK L+S S+I + L E
Sbjct: 9 FIVIEGLDRSGKS----TVCKGLKQLLESEGKKVKLIGFPSNNFYIGRDSTIGNILSEYL 64
Query: 102 DAHDSLLRRA---YYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDL 157
+ LL + +S + A DIKQ L + ++ DR+ +S AY + + + S
Sbjct: 65 KCKNDLLPQTAHLLFSADRWQAQNDIKQSLSEGFYLICDRYAYSGVAYSVGAQGLNISWA 124
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
K D L+ PDL YL + I +R S N LE+ L +N EL
Sbjct: 125 KHSD---------TGLVSPDLTFYLNIKSNIIAKR-SGFGNERLEKINLMENV---ELAY 171
Query: 218 TIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
+++ N+P + VD +N +E I NL
Sbjct: 172 QMFQ--NSPNWILVD---------ANQDIEAIKNL 195
>gi|442319328|ref|YP_007359349.1| deoxynucleoside kinase [Myxococcus stipitatus DSM 14675]
gi|441486970|gb|AGC43665.1| deoxynucleoside kinase [Myxococcus stipitatus DSM 14675]
Length = 214
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 23/189 (12%)
Query: 58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTP-PSSIMSLREKFDAHDSLLRRA 111
Y IV EG G GK+ S ++++L A ++ P S+ + R+KF +
Sbjct: 3 YRYIVVEGPIGVGKTSLSNILSERLSARRVLEVVEENPFLSNFYTDRQKFGFQTQI---- 58
Query: 112 YYSLGNYIAAQDI-KQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
++ L + Q++ +QDL + V D + + N + +L L + + P
Sbjct: 59 FFLLSRFRQQQELFQQDLFRSVTVSDYLFAKDRIFAHLN--LDAHELALYERVFEALG-P 115
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM----NNP 226
+ + KPDLV+YL + LQR+ +R E E K +A + E L Y N
Sbjct: 116 R-VTKPDLVVYLQARLDVLLQRIKKRGR----EFERKFDAAYLEGLVHAYNNFFSHYTET 170
Query: 227 ELVFVDNSE 235
L+ VD S+
Sbjct: 171 PLLVVDTSD 179
>gi|11497681|ref|NP_068902.1| thymidylate kinase [Archaeoglobus fulgidus DSM 4304]
gi|6016458|sp|O30175.1|KTHY_ARCFU RecName: Full=Probable thymidylate kinase; AltName: Full=dTMP
kinase
gi|2650584|gb|AAB91163.1| thymidylate kinase (tmk) [Archaeoglobus fulgidus DSM 4304]
Length = 196
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 65/152 (42%), Gaps = 22/152 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVA-----KKLKASLKSTPPSS-----IMSLREKFDAHDSLLR 109
LI EG+DG GK+ + +A K K + P S I S E+ + L
Sbjct: 2 LIAVEGIDGAGKTTIAAYIAELLKEKGYKVKVLKEPGDSKFGKKIKSSEERLSPEEEL-- 59
Query: 110 RAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168
+ A ++I LQ VVMDR++ S AY A + D +L E ++
Sbjct: 60 ELFLKDREIDARENILPALQSGYAVVMDRYYFSNIAYQSA----RGIDARLIREMNE--- 112
Query: 169 WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFT 200
K KPDL I L V I L+R+ +R +
Sbjct: 113 --KIAPKPDLTILLDVEPEIALERVRKRGKLS 142
>gi|397663831|ref|YP_006505369.1| thymidylate kinase [Legionella pneumophila subsp. pneumophila]
gi|395127242|emb|CCD05432.1| thymidylate kinase [Legionella pneumophila subsp. pneumophila]
Length = 212
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 42/220 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAY------- 112
LIV EGL+G GKS A L L S S ++ RE + R+
Sbjct: 8 LIVIEGLEGAGKS-----TAVNLVVELLSQKKISTITTREPGGTKIGEILRSIIKNPEYN 62
Query: 113 ------------YSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKL 159
Y+ + Q IK L Q V+ DRF ST AY + D++L
Sbjct: 63 NVLDDRSELLLLYAARIQLIEQVIKPALNAGQWVIADRFELSTLAYQGGG---RKMDMRL 119
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTI 219
+E + ++ KPDL +YL ++ + + R R F E E + +F +
Sbjct: 120 INE---LSNFCLKGFKPDLTLYLDINPELGMIRAKSRGKFDRIEQE---SIEFFHRIHDT 173
Query: 220 YRNM--NNPELVFVDNSEKSVHESSNDIVELI-----HNL 252
Y + NP+++ +D + +S+ E + I +I HNL
Sbjct: 174 YHILVKQNPDIMVID-ANRSLEEVQSSIQSVIEEFIEHNL 212
>gi|451948936|ref|YP_007469531.1| thymidylate kinase [Desulfocapsa sulfexigens DSM 10523]
gi|451908284|gb|AGF79878.1| thymidylate kinase [Desulfocapsa sulfexigens DSM 10523]
Length = 203
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 45/191 (23%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA-HDSLLRRAYYSLGNY 118
LIVFEG DG GKS + +AK L+ +++S RE D + +R Y GN
Sbjct: 10 LIVFEGTDGTGKSTQLKLLAKALQEK-----GLAVVSTREPTDGKYGQQIRELYSDRGNV 64
Query: 119 IAAQDIK---QDLQK-------------QPVVMDRFWHSTSAY----GMANELVKNSDLK 158
+++ D Q+ + ++ DR++ ST AY G+ ++ N +
Sbjct: 65 SLEEELNLFLADRQEHVESFLRPALHDGKIILCDRYYLSTIAYQGAAGLEPSMILNRNSF 124
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL----EENELKKNAKFRE 214
P PDL I AI ++R+++ + T +E LKK A+ E
Sbjct: 125 AP--------------VPDLAILFHAPIAIGVKRITQNRGDTQNDFEKEGYLKKVAQQFE 170
Query: 215 LLTTIY-RNMN 224
LL Y R +N
Sbjct: 171 LLNLPYIRRIN 181
>gi|340795133|ref|YP_004760596.1| thymidilate synthase [Corynebacterium variabile DSM 44702]
gi|340535043|gb|AEK37523.1| thymidilate synthase [Corynebacterium variabile DSM 44702]
Length = 236
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 47/225 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL--KSTPPSSIMSLREKFDAHDSLLRRAYY-SLG 116
+I FEG+DG GK+ TV L+A L + P + + R + H L A + +G
Sbjct: 2 IIAFEGIDGAGKN----TVVTALEAELIAREIPVARLAFPRYETSVHAQLASAALHGGMG 57
Query: 117 NY-----------------IAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
+ +AA+ D V++DR+ S +AY A + D
Sbjct: 58 DLVDSAYGMATLFALDRAEVAAELTGFDEDGYVVLLDRWVASNAAYSAAR---LSQDASA 114
Query: 160 PDEDDDIYSWPKDLM-------KPDLVIYLTVSEAIRLQRLSRR----KNFTLEENELKK 208
E ++ +W DL PDL + + V +++ R++ R ++ E+
Sbjct: 115 GGESSEVVAWVDDLEFTQLGIPVPDLQVLVNVPDSVTAGRVAARAEEDAGRGVDAYEVDG 174
Query: 209 NAKFRELLTTIYRNM-----NNPELVFVDNSEKSVHESSNDIVEL 248
+ R L YR + N+P LV ++ ++S ++ +VEL
Sbjct: 175 GLQARTL--AAYRALADARWNSPWLVLDNSGDRSALDAQ--LVEL 215
>gi|253997251|ref|YP_003049315.1| deoxynucleoside kinase [Methylotenera mobilis JLW8]
gi|253983930|gb|ACT48788.1| deoxynucleoside kinase [Methylotenera mobilis JLW8]
Length = 215
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 65/164 (39%), Gaps = 49/164 (29%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAY---- 112
K+P IV EG GCGK+ S+ +A+K L EK +A + L R Y
Sbjct: 6 KFPYIVVEGPIGCGKTTLSKMLAEKFPVDY----------LSEKAEA-NPFLPRFYQDAQ 54
Query: 113 -YSLGN-----YIAAQDIKQ----DLQKQPVVMDRFWHS----------TSAYGMANELV 152
Y L + A IK+ D+ +P+V D F Y + +++
Sbjct: 55 RYGLPTQLFFLFQRANQIKELSQRDMFAKPIVADFFLEKDPIFARLNLDDEEYALYHQIY 114
Query: 153 KNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRR 196
++ LK P KPDLVIYL ++R+ R
Sbjct: 115 QHLQLKAP--------------KPDLVIYLQTPIDSLMERIEER 144
>gi|114330554|ref|YP_746776.1| thymidylate kinase [Nitrosomonas eutropha C91]
gi|122314450|sp|Q0AIL5.1|KTHY_NITEC RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|114307568|gb|ABI58811.1| thymidylate kinase [Nitrosomonas eutropha C91]
Length = 215
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 22/207 (10%)
Query: 60 LIVFEGLDGCGKSHTSQTVA-----KKLKASLKSTPPSSIMS--LREKFDAHDSLLRRAY 112
I FEG+DG GKS +A K L+ + P S+ + LR+ H +
Sbjct: 6 FITFEGIDGAGKSTHLAWLASFLRDKGLEVIVTREPGSTALGEQLRQLLLDHRQAMHAET 65
Query: 113 YSLGNYIAAQD-----IKQDLQKQP-VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDI 166
+L + A ++ I L++ V+ DRF ++ AY V ++ L++ ++
Sbjct: 66 ETLLMFAARREHLDKVILPALERGAWVISDRFTDASFAYQGGGRGVPSARLEILEQ---- 121
Query: 167 YSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT-IYRNMNN 225
W + PDL +Y V I QR+ + T + EL+ + F + + R
Sbjct: 122 --WVQKGFSPDLTVYFDVPVTISRQRVQSAR--TADRFELEPDLFFERVRQAYLQRAKQF 177
Query: 226 PELVFVDNSEKSVHESSNDIVELIHNL 252
E + V + S+ E +VE++
Sbjct: 178 SERIRVVDGSLSLEEVRTAMVEVVEKF 204
>gi|425454656|ref|ZP_18834386.1| Thymidylate kinase [Microcystis aeruginosa PCC 9807]
gi|389804625|emb|CCI16225.1| Thymidylate kinase [Microcystis aeruginosa PCC 9807]
Length = 207
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 35/185 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMS--LRE------------- 99
IVFEG+DG G S ++ + + KA L P ++ +RE
Sbjct: 5 FIVFEGIDGSGTSTQAKLLQEYFFKRGEKAVLSPEPSEGVIGRLIREIMQTNLISIKDKN 64
Query: 100 KFDAHDSLL---RRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSD 156
KFD + L R Y+ ++ + Q V+ R++ S+ AY N
Sbjct: 65 KFDRQMAYLFAADRHYHLYNDHDGVFKLIHQEQTH-VITTRYYFSSLAYNCNN------- 116
Query: 157 LKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL 216
P+E I + PD+VIY+ V I L R+ R + E + +K K R++
Sbjct: 117 ---PEEFAFIRQLNQHFPNPDIVIYIDVLPDISLARIKNRAITEVYEKQ-EKLMKVRQMF 172
Query: 217 TTIYR 221
I++
Sbjct: 173 LDIFK 177
>gi|389586600|dbj|GAB69329.1| thymidylate kinase, partial [Plasmodium cynomolgi strain B]
Length = 219
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 67/156 (42%), Gaps = 34/156 (21%)
Query: 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS----------LKSTPPSSI 94
TND G +K IVFEGLD GKS S+ + + L+ + TP I
Sbjct: 8 TND-----GTKKKGKFIVFEGLDRSGKSTQSKLLVEHLRRKNMEVNHLCFPNRETPTGQI 62
Query: 95 MSLREKFDAH-DSLLRRAYYSLGNYIAAQDIKQDLQKQP-VVMDRFWHSTSAYGMANELV 152
++ K ++ + +S + +IK+ L K VV DR+ +S AY
Sbjct: 63 IAKYLKMQSNMTNETIHLLFSANRWELMGEIKRLLAKGVWVVCDRYAYSGVAYSAG---- 118
Query: 153 KNSDLKLPDEDDDIYSWP----KDLMKPDLVIYLTV 184
LKLP +W + L+KPD+V YL V
Sbjct: 119 ---ALKLPK------TWCMNPDQGLIKPDVVFYLNV 145
>gi|19076042|ref|NP_588542.1| thymidylate kinase Tmp1 [Schizosaccharomyces pombe 972h-]
gi|14286144|sp|P36590.2|KTHY_SCHPO RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|3192027|emb|CAA19357.1| thymidylate kinase Tmp1 [Schizosaccharomyces pombe]
Length = 210
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 50/218 (22%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIM-------SLREKFDAHDSL 107
LIV EGLD GKS Q + KL KA L P + L+E +D +
Sbjct: 9 LIVIEGLDRSGKSTQCQLLVDKLISQHEKAELFKFPDRTTAIGKKIDDYLKESVQLNDQV 68
Query: 108 LRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAY----GMANELVKNSDLKLPDE 162
+ +S + Q I + + K ++DR+ S A+ G+ E K+ D LP
Sbjct: 69 I-HLLFSANRWETIQYIYEQINKGVTCILDRYAFSGIAFSAAKGLDWEWCKSPDRGLP-- 125
Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLS----RRKNFTLEENELKK----NAKFRE 214
+PDLVI+L V I R R + ++E LK +FRE
Sbjct: 126 ------------RPDLVIFLNVDPRIAATRGQYGEERYEKIEMQEKVLKNFQRLQKEFRE 173
Query: 215 LLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
E + +D S S+ + + IV+L+ N+
Sbjct: 174 ---------EGLEFITLDAS-SSLEDVHSQIVDLVSNV 201
>gi|407005356|gb|EKE21494.1| dTMP kinase [uncultured bacterium]
Length = 200
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 100/211 (47%), Gaps = 36/211 (17%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLK-ASLK----STPPSSIMS------LREKFDAHD 105
K IVFEGLDG G+S + K LK +K S P +++ L +++ +
Sbjct: 3 KGKFIVFEGLDGSGQSTQISLLEKYLKDKGIKFHTTSEPSGNLLGGLIRAILTKQWKLSN 62
Query: 106 SLLRRAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD 164
+ ++ Y + + ++ ++K V+ R++ ST A+G ++DL ++ +
Sbjct: 63 TGIQLLYAADRAHHLESEVWPAMEKGNHVISSRYFFSTFAFGSL-----DNDLAWLEKIN 117
Query: 165 DIYSWPKDLMKPDLVIYLTVS--EAIRLQRLSR-RKNFTLEENELKKNAKFRELLTTIYR 221
+ + KPDLV ++ VS E IR SR RK F EE +LKK + ++Y
Sbjct: 118 EKFP------KPDLVFFIRVSPKECIRRIESSRFRKEFFEEEAKLKK-------VLSVYD 164
Query: 222 NMNNPEL---VFVDNSEKSVHESSNDIVELI 249
++ + + + E+SV E +I ++I
Sbjct: 165 KISKSKKYKNFYTIDGERSVEEIFAEISKII 195
>gi|401837645|gb|EJT41548.1| CDC8-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 253
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 33/202 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL--KASLKSTPPSS--IMSLREKFDAHDSL-----LRR 110
LI+ EGLD GK+ + KKL L P S I L ++ DSL
Sbjct: 41 LILIEGLDRTGKTTQCNILYKKLLPNCELIKFPERSTRIGGLINQYLTDDSLQLSDQAIH 100
Query: 111 AYYSLGNYIAAQDIKQD-LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
+S + +K+ L+ + +VMDR+ +S AY A + DL + D
Sbjct: 101 LLFSANRWEMVDGMKKALLEGKNIVMDRYVYSGVAYSAAKK-TDGMDLNWCLQPD----- 154
Query: 170 PKDLMKPDLVIYLTVS----------------EAIRLQRLSRRKNFTLEENELKKNAKFR 213
L+KPDL ++L++ E ++ Q+ + TL ENE+K+ +
Sbjct: 155 -IGLLKPDLTLFLSIQDVNSNAGKDGFGEERYETLKFQKQVKHTFITLLENEMKRGDESI 213
Query: 214 ELLTTIYRNMNNPELVFVDNSE 235
+++ R ++ E + + +E
Sbjct: 214 KIVDVGNRGIHEVEALIWEIAE 235
>gi|62898429|dbj|BAD97154.1| deoxythymidylate kinase (thymidylate kinase) variant [Homo sapiens]
Length = 212
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 88/208 (42%), Gaps = 45/208 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+ GKS S+ + + L A+ +ST ++S L++K D
Sbjct: 4 RRGALIVLEGVGRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 63
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +V+DR+ S A+ A E K D+
Sbjct: 64 EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV 122
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
LP KPDLV++L ++L ++R F E E N F+E
Sbjct: 123 GLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NGAFQERAL 161
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
+ + N ++V S ++VHE
Sbjct: 162 RCFHQLMKDTTLNWKMVDASKSIEAVHE 189
>gi|392298482|gb|EIW09579.1| Cdc8p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 216
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 87/200 (43%), Gaps = 25/200 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK-------STPPSSIMS---LREKFDAHDSLLR 109
LI+ EGLD GK+ + KKL+ + K ST +++ + F D +
Sbjct: 7 LILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRTGGLINEYLTDDSFQLSDQAI- 65
Query: 110 RAYYSLGNYIAAQDIKQD-LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168
+S + IK+D L+ + +VMDR+ +S AY A DL + D
Sbjct: 66 HLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKG-TNGMDLDWCLQPD---- 120
Query: 169 WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPEL 228
L+KPDL ++L+ + + + + F E E KF+E + + + + E+
Sbjct: 121 --VGLLKPDLTLFLSTQD---VDNNAEKSGFGDERYE---TVKFQEKVKQTFMKLLDKEI 172
Query: 229 VFVDNSEKSVHESSNDIVEL 248
D S V ++ DI E+
Sbjct: 173 RKGDESITIVDVTNKDIQEV 192
>gi|313891237|ref|ZP_07824855.1| dTMP kinase [Streptococcus pseudoporcinus SPIN 20026]
gi|416851956|ref|ZP_11909101.1| dTMP kinase [Streptococcus pseudoporcinus LQ 940-04]
gi|313120304|gb|EFR43425.1| dTMP kinase [Streptococcus pseudoporcinus SPIN 20026]
gi|356739445|gb|EHI64677.1| dTMP kinase [Streptococcus pseudoporcinus LQ 940-04]
Length = 209
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 71/163 (43%), Gaps = 35/163 (21%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDS-LLRRAYYSL 115
K LI FEG DG GK+ +V + L L++ + I+ RE + +R +
Sbjct: 3 KGRLITFEGPDGAGKT----SVIEGLVPLLENLNQTEIVVTREPGGVSIAESIREVILDV 58
Query: 116 GN-----------YIAAQDIKQDL---------QKQPVVMDRFWHSTSAY-GMANELVKN 154
N YIAA+ +Q L Q Q V++DRF S+ AY G L K
Sbjct: 59 RNTAMDPKTELLLYIAAR--RQHLVEKVLPALEQGQMVLIDRFIDSSVAYQGAGRGLSKK 116
Query: 155 SDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ L D + D + PDL +Y +S I L R+++ K
Sbjct: 117 AIQWLND-------FATDGVTPDLTLYFDLSPEIGLARIAKNK 152
>gi|404372686|ref|ZP_10977981.1| thymidylate kinase [Clostridium sp. 7_2_43FAA]
gi|226911179|gb|EEH96380.1| thymidylate kinase [Clostridium sp. 7_2_43FAA]
Length = 209
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 33/217 (15%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKA----SLKSTPPSSIM---SLRE-----KFDAH 104
K IVFEG DG GKS V L +K+ P I +RE K
Sbjct: 3 KGKFIVFEGGDGSGKSTILDMVYDYLIENNIECIKTREPGGIKISEDIREVILDTKNTKM 62
Query: 105 DSLLRRAYYSLG--NYIAAQDIKQDLQKQPVVMDRFWHSTSAY-GMANELVKNSDLKLPD 161
DS Y+ ++ + I + + V+ DRF +S+ AY G A +N +
Sbjct: 63 DSRTEALLYAAARRQHLVEKVIPEIDRGAIVLCDRFIYSSLAYQGYA----RNIGI---- 114
Query: 162 EDDDIYSWPKDLMK---PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK---NAKFREL 215
D+IY K + PDL I +S I L+R+++ K + +L+K + K R+
Sbjct: 115 --DEIYQINKFAVGEYMPDLNILFDLSPEIGLERINKNKEREINRLDLEKIDFHNKVRDG 172
Query: 216 LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
+Y N E N+EKS+ E N + E+I +
Sbjct: 173 YLKLYE--ENKEKFVKINAEKSIEEVFNVVKEIITDF 207
>gi|321254063|ref|XP_003192951.1| thymidylate kinase [Cryptococcus gattii WM276]
gi|317459420|gb|ADV21164.1| thymidylate kinase, putative [Cryptococcus gattii WM276]
Length = 217
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 74/180 (41%), Gaps = 38/180 (21%)
Query: 57 KYPLIVFEGLDGCGKS----HTSQTVAKKLKASLKSTPPSSIMSLREKFDAH-------D 105
+ IVFEGLD CGKS H Q + ++ + + P + + DA+ D
Sbjct: 6 RGAFIVFEGLDRCGKSTQVDHLVQRLERQGRRARLQKFPDRTTQIGKMIDAYLQSKTEID 65
Query: 106 SLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD 164
+S + + I++DL V+ DR+ S A+ A L + L+ PD
Sbjct: 66 DHAIHLLFSANRWECSAAIRRDLASGITVIADRYAFSGIAFSAAKGLCFDFCLQ-PD--- 121
Query: 165 DIYSWPKDLMKPDLVIYLTVS---------------EAIRLQRLSRRKNFTLEENELKKN 209
L PD +YLT+ E++ +Q+ + R+ F L NE+KK
Sbjct: 122 ------AGLPLPDATLYLTLPPETAARRSAYGEERYESVSIQQ-AVRQQFKLVANEIKKR 174
>gi|319762329|ref|YP_004126266.1| thymidylate kinase [Alicycliphilus denitrificans BC]
gi|317116890|gb|ADU99378.1| thymidylate kinase [Alicycliphilus denitrificans BC]
Length = 218
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 27/145 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS---TPPSSIMSLREKF------DAHDSLLRR 110
I FEG+DG GKS +T+A+ L+A+ +S T L EK DA D+L
Sbjct: 6 FITFEGIDGAGKSSHIETLARALRAAGRSVTLTREPGGTPLAEKLRALLLNDAMDALTE- 64
Query: 111 AYYSLGNYIAAQD-----IKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPD--- 161
+L + A +D I L + + V+ DRF +T AY A + DL++
Sbjct: 65 ---TLLAFAARRDHLCRVIGPALARGEAVLCDRFTDATFAYQGAG---RGFDLRVLSYME 118
Query: 162 --EDDDIYSWPKDLMKPDLVIYLTV 184
I P +++PDL ++ V
Sbjct: 119 RLAQTGIGLGPDLMLEPDLTLWFDV 143
>gi|68486049|ref|XP_713041.1| hypothetical protein CaO19.8730 [Candida albicans SC5314]
gi|68486114|ref|XP_713007.1| hypothetical protein CaO19.1137 [Candida albicans SC5314]
gi|46434470|gb|EAK93878.1| hypothetical protein CaO19.1137 [Candida albicans SC5314]
gi|46434509|gb|EAK93916.1| hypothetical protein CaO19.8730 [Candida albicans SC5314]
gi|238878423|gb|EEQ42061.1| thymidylate kinase [Candida albicans WO-1]
Length = 224
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 22/208 (10%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL------KSTPPSSIMS--LREKFDAHDSLLRRA 111
LI+ EGLD GKS + ++ KL S +STP +++ L K
Sbjct: 6 LILIEGLDRSGKSTQASILSTKLSPSKLIKFPDRSTPIGKLINEYLTNKSFTLSDQAAHL 65
Query: 112 YYSLGNYIAAQDIKQDLQKQP--VVMDRFWHSTSAYGMANE------LVKNSDLKLPDED 163
+S + +Q I QDL Q +++DR+ +S AY +A + + + + +
Sbjct: 66 LFSANRWELSQQI-QDLLNQGYFIILDRYIYSGIAYTLAKNDFHDETISQGKNKQQLNNI 124
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-NAKFRELLTTIYRN 222
D + S K L KP LT+ + L+ +S+RK + E EL++ AK ++ I
Sbjct: 125 DWLLSPDKGLPKP----DLTLFLTLDLEEISKRKGWGDERYELQQFQAKVKQCFLEILDT 180
Query: 223 MNNPELVFVDNSEKSVHESSNDIVELIH 250
+P + VD K++ + + + E+I
Sbjct: 181 NKDPTIRIVDVGGKTIDQVTTQLWEIIE 208
>gi|172986|gb|AAA35158.1| thymidylate kinase [Saccharomyces cerevisiae]
gi|190409534|gb|EDV12799.1| thymidylate kinase [Saccharomyces cerevisiae RM11-1a]
gi|207343848|gb|EDZ71181.1| YJR057Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256273082|gb|EEU08037.1| Cdc8p [Saccharomyces cerevisiae JAY291]
Length = 216
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 86/199 (43%), Gaps = 23/199 (11%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK--STPPSS--IMSLREKFDAHDSL-----LRR 110
LI+ EGLD GK+ + KKL+ + K P S I L ++ DS
Sbjct: 7 LILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIH 66
Query: 111 AYYSLGNYIAAQDIKQD-LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
+S + IK+D L+ + +VMDR+ +S AY A DL + D
Sbjct: 67 LLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKG-TNGMDLDWCLQPD----- 120
Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELV 229
L+KPDL ++L+ + + + + F E E KF+E + + + + E+
Sbjct: 121 -VGLLKPDLTLFLSTQD---VDNNAEKSGFGDERYE---TVKFQEKVKQTFMKLLDKEIR 173
Query: 230 FVDNSEKSVHESSNDIVEL 248
D S V ++ DI E+
Sbjct: 174 KGDESITIVDVTNKDIQEV 192
>gi|259147521|emb|CAY80772.1| Cdc8p [Saccharomyces cerevisiae EC1118]
gi|323308467|gb|EGA61712.1| Cdc8p [Saccharomyces cerevisiae FostersO]
gi|323336951|gb|EGA78208.1| Cdc8p [Saccharomyces cerevisiae Vin13]
gi|365764715|gb|EHN06236.1| Cdc8p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 215
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 86/199 (43%), Gaps = 23/199 (11%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK--STPPSS--IMSLREKFDAHDSL-----LRR 110
LI+ EGLD GK+ + KKL+ + K P S I L ++ DS
Sbjct: 6 LILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIH 65
Query: 111 AYYSLGNYIAAQDIKQD-LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
+S + IK+D L+ + +VMDR+ +S AY A DL + D
Sbjct: 66 LLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKG-TNGMDLDWCLQPD----- 119
Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELV 229
L+KPDL ++L+ + + + + F E E KF+E + + + + E+
Sbjct: 120 -VGLLKPDLTLFLSTQD---VDNNAEKSGFGDERYE---TVKFQEKVKQTFMKLLDKEIR 172
Query: 230 FVDNSEKSVHESSNDIVEL 248
D S V ++ DI E+
Sbjct: 173 KGDESITIVDVTNKDIQEV 191
>gi|373459032|ref|ZP_09550799.1| deoxynucleoside kinase [Caldithrix abyssi DSM 13497]
gi|371720696|gb|EHO42467.1| deoxynucleoside kinase [Caldithrix abyssi DSM 13497]
Length = 215
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 7/139 (5%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASL--KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNY 118
I EG+ G GK+ + +AK L A L + + + + H + + ++ L +
Sbjct: 9 IAVEGVIGAGKTTLADMLAKTLGAHLILEEFEENPFLEDFYRDPEHYAFQTQIFFLLSRF 68
Query: 119 IAAQDIKQ-DLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPD 177
Q+++Q DL +Q VV D + + N + ++KL D + K++ +PD
Sbjct: 69 RQLQELRQVDLFRQKVVSDYIFEKDRIFATLN--LSEKEMKLYDGIARLIE--KEVPRPD 124
Query: 178 LVIYLTVSEAIRLQRLSRR 196
LVIYL S ++ + +R
Sbjct: 125 LVIYLQASTQHLMENIRKR 143
>gi|433609332|ref|YP_007041701.1| dTMP kinase [Saccharothrix espanaensis DSM 44229]
gi|407887185|emb|CCH34828.1| dTMP kinase [Saccharothrix espanaensis DSM 44229]
Length = 213
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 33/171 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKF--DAHDSLLRRA------ 111
L+V EGLDG GK +T+AK L +L ++ D H L+R A
Sbjct: 4 LVVIEGLDGAGK----RTLAKALTDALAVQGRKVATGAFPRYDDDIHAELVRDALHGRLG 59
Query: 112 -----------YYSLGNYIAAQDIKQDLQKQPVV-MDRFWHSTSAYGMANELVKNSDLKL 159
Y+L AA I+ DL VV +DR+ S +AYG A L +++D +
Sbjct: 60 DLTDSVHGMSVLYALDRRGAADRIRADLLDYDVVLLDRYIASNAAYGAAR-LRQHADGEF 118
Query: 160 PDE----DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL 206
D + D + P PDL + L V A+ R + R+ E ++
Sbjct: 119 VDWLRALEVDRFGLP----IPDLQLLLRVPSAVAQSRAAHRETSEQRERDV 165
>gi|428184205|gb|EKX53061.1| hypothetical protein GUITHDRAFT_64796 [Guillardia theta CCMP2712]
Length = 212
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 29/215 (13%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTP--PSSIMSLREKF-----DAH 104
+ LIV EGLD GKS + +KL KAS + P +++ L ++ D
Sbjct: 4 RGALIVLEGLDRSGKSTQVIRLVEKLVSMGKKASKMNFPDRTTTVGGLINEYLQSGKDLD 63
Query: 105 DSLLRRAYYSLGNYIAAQDIKQDLQ-KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
D+++ +S + A + I+ L + +++DR+ +S A+ A + K PD
Sbjct: 64 DAVIH-LLFSANRWEATRSIRDRLSSGETLIVDRYAYSGVAFSAAKGTLDIEWCKGPD-- 120
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLS-RRKNFTLEENELKKNAKFRELLT---TI 219
+ L PD VIYL VS + QR + + EE + K F L++ +
Sbjct: 121 -------RGLPAPDCVIYLDVSSDVAKQRGGYGEERYEKEEFQKKVRTCFEALMSQEPAM 173
Query: 220 YRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPM 254
+R ++ + +D + + + IV+ + + P+
Sbjct: 174 WRRVDANKT--MDEVTEEIEGIATKIVDQVTDKPI 206
>gi|345875659|ref|ZP_08827450.1| deoxyguanosine kinase [Neisseria weaveri LMG 5135]
gi|417958280|ref|ZP_12601195.1| deoxyguanosine kinase [Neisseria weaveri ATCC 51223]
gi|343966938|gb|EGV35189.1| deoxyguanosine kinase [Neisseria weaveri ATCC 51223]
gi|343968734|gb|EGV36958.1| deoxyguanosine kinase [Neisseria weaveri LMG 5135]
Length = 214
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 27/155 (17%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
KY IV EG G GKS S+ +A+ A L S P H+ L + Y +
Sbjct: 2 KYRYIVVEGSIGSGKSALSKRLAEHFGALLLSENPE-----------HNPFLEQFYLNAA 50
Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHS--TSAYGMANELVKNSDLKLP---------DEDDD 165
N+ A ++ L ++ ++R S Y +++ L++ + +P +E
Sbjct: 51 NHGLATEL-YFLMRRAEAVERILEEEDKSGYIVSDFLLEKDQIFVPTLLKANENGNEQTL 109
Query: 166 IYSWPKDLMK----PDLVIYLTVSEAIRLQRLSRR 196
+ + +M PDLVIYL S+ + +RL +R
Sbjct: 110 FWEVKRKIMPEYPLPDLVIYLQTSDEVAQKRLQKR 144
>gi|390346478|ref|XP_789676.2| PREDICTED: thymidylate kinase-like [Strongylocentrotus purpuratus]
gi|390358306|ref|XP_784160.2| PREDICTED: thymidylate kinase-like [Strongylocentrotus purpuratus]
Length = 214
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 90/214 (42%), Gaps = 38/214 (17%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVA-----KKLKASLKSTPPSSIM-------SLREKFDA 103
R+ L+VFEG D GKS + + K +KA L P S + L+ D
Sbjct: 2 RRGALVVFEGCDRSGKSTQCKKLVESMLEKGMKAELMRFPERSTVIGKLIDSYLKNSKDV 61
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
D+ + +S + ++++ L + +V+DR+ +S A+ A E + + K PD
Sbjct: 62 QDNAI-HLLFSANRWELKPEMERKLNEGVTLVVDRYAYSGVAFTAAKEGISLNWCKRPD- 119
Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRN 222
L PDLV++L VS + +R F E E E+ + +N
Sbjct: 120 --------VGLPLPDLVLFLKVSS----EAAEKRGGFGEERYEKS------EIQARVAKN 161
Query: 223 M-----NNPELVFVDNSEKSVHESSNDIVELIHN 251
N+ E++ D S + V + ++V + N
Sbjct: 162 FEKLQENDWEIINADQSMEDVQKQIQNVVSNLMN 195
>gi|323304253|gb|EGA58027.1| Cdc8p [Saccharomyces cerevisiae FostersB]
Length = 215
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 87/200 (43%), Gaps = 25/200 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK-------STPPSSIMS---LREKFDAHDSLLR 109
LI+ EGLD GK+ + KKL+ + K ST +++ + F D +
Sbjct: 6 LILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRXGGLINEYLTDDSFQLSDQAI- 64
Query: 110 RAYYSLGNYIAAQDIKQD-LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168
+S + IK+D L+ + +VMDR+ +S AY A DL + D
Sbjct: 65 HLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKG-TNGMDLDWCLQPD---- 119
Query: 169 WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPEL 228
L+KPDL ++L+ + + + + F E E KF+E + + + + E+
Sbjct: 120 --VGLLKPDLTLFLSTQD---VDNNAEKSGFGDERYE---TVKFQEKVKQTFMKLLDKEI 171
Query: 229 VFVDNSEKSVHESSNDIVEL 248
D S V ++ DI E+
Sbjct: 172 RKGDESITIVDVTNKDIQEV 191
>gi|156842253|ref|XP_001644495.1| hypothetical protein Kpol_529p17 [Vanderwaltozyma polyspora DSM
70294]
gi|156115139|gb|EDO16637.1| hypothetical protein Kpol_529p17 [Vanderwaltozyma polyspora DSM
70294]
Length = 217
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 15/132 (11%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP--PSSIMSLREKFDAHDSLLR-----RAY 112
LI+ EGLD GKS + +KL +L P + I L + S
Sbjct: 6 LILIEGLDRTGKSTQCDILCEKLNGTLMKFPQRETKIGQLINNYLTDKSFKMPDQSIHLL 65
Query: 113 YSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK 171
+S + ++ I+ +L + V++DR+ +S AY A + D+ D Y K
Sbjct: 66 FSANRWEMSEIIQTELNNGRDVILDRYVYSGIAYSSAKH-ISGMDI------DWCYQCDK 118
Query: 172 DLMKPDLVIYLT 183
L++PD+ ++LT
Sbjct: 119 GLIRPDITVFLT 130
>gi|336476332|ref|YP_004615473.1| thymidylate kinase [Methanosalsum zhilinae DSM 4017]
gi|335929713|gb|AEH60254.1| thymidylate kinase [Methanosalsum zhilinae DSM 4017]
Length = 201
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 37/212 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS-------LKSTPPSSIMSLREKFDAHDSLLRRAY 112
LI FEG+DG GKS T+ L++S P S + + H A
Sbjct: 5 LITFEGIDGAGKS----TIVSLLRSSGVMEDVVFTREPTDSWLGRTVETAIHSDTDHLAE 60
Query: 113 YSLGNYIAAQDIKQDLQKQ-----PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
L AQ I + ++ V+ DR+ ST AY + L DD
Sbjct: 61 LFLFTADHAQHISKVIRPAVNNGICVISDRYSDSTYAY---------QGMTLAGMFDDPV 111
Query: 168 SWPKDLMK-----PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRN 222
W +DL K PDL I L + AI ++R R E+ + +K +F + + + Y
Sbjct: 112 KWAQDLRKDWTIIPDLTILLDIDPAIAVKRCGDRG----EQTKFEK-LEFLQGVRSNYLR 166
Query: 223 M--NNPELVFVDNSEKSVHESSNDIVELIHNL 252
+ +P+ V +S S E + I +I L
Sbjct: 167 LAEQDPDRFIVVDSSGSAREVAEKISLIISPL 198
>gi|118594496|ref|ZP_01551843.1| Deoxynucleoside kinase [Methylophilales bacterium HTCC2181]
gi|118440274|gb|EAV46901.1| Deoxynucleoside kinase [Methylophilales bacterium HTCC2181]
Length = 215
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFD--AHDSLLRRAYYS 114
KYP IV EG G GKS ++ +A + A++ S L + ++ H +L + ++
Sbjct: 6 KYPYIVVEGPIGSGKSTLARLLANQFNANMFSEKAERNPFLPKFYEDMKHYALPTQLFFL 65
Query: 115 LGNYIAAQDIKQ-DLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK-D 172
++KQ D + VV D F + N + N + KL D+ IY +
Sbjct: 66 FQRANQISELKQNDFFRNGVVADFFLQKDPIFARLN--LDNEEFKLYDQ---IYRHLEIK 120
Query: 173 LMKPDLVIYLTVSEAIRLQRLSRR 196
PDLVIYL + R+ +R
Sbjct: 121 APTPDLVIYLQTPVDLLRARVEKR 144
>gi|241950051|ref|XP_002417748.1| dTMP kinase, putative; thymidylate kinase, putative [Candida
dubliniensis CD36]
gi|223641086|emb|CAX45461.1| dTMP kinase, putative [Candida dubliniensis CD36]
Length = 224
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 22/208 (10%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL------KSTPPSSIMS--LREKFDAHDSLLRRA 111
LI+ EGLD GKS + ++ KL S +STP +++ L K
Sbjct: 6 LILIEGLDRSGKSTQASILSTKLSPSKLIKFPDRSTPIGKLINEYLTNKSFTLSDQSAHL 65
Query: 112 YYSLGNYIAAQDIKQDLQKQP--VVMDRFWHSTSAYGMANE------LVKNSDLKLPDED 163
+S + +Q I QDL Q +++DR+ +S AY +A + + + + +
Sbjct: 66 LFSANRWELSQQI-QDLLNQGYFIILDRYIYSGIAYTLAKNDFHDETISQGKNKQQLNNV 124
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-NAKFRELLTTIYRN 222
D + S K L KP LT+ + L+ +S+RK + E EL++ AK ++ I
Sbjct: 125 DWLLSPDKGLPKP----DLTLFLTLDLEEISKRKGWGDERYELQQFQAKVKQCFLEILDT 180
Query: 223 MNNPELVFVDNSEKSVHESSNDIVELIH 250
++P + VD K++ + + + E+I
Sbjct: 181 NDDPTIRIVDVGGKTIDQVTTQLWEIIE 208
>gi|268318943|ref|YP_003292599.1| hypothetical protein FI9785_450 [Lactobacillus johnsonii FI9785]
gi|417836970|ref|ZP_12483210.1| thymidylate kinase [Lactobacillus johnsonii pf01]
gi|262397318|emb|CAX66332.1| tmk [Lactobacillus johnsonii FI9785]
gi|338762649|gb|EGP13916.1| thymidylate kinase [Lactobacillus johnsonii pf01]
Length = 213
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 35/186 (18%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS------TPPSSIMSL-----------R 98
R Y LI FEG DG GK+ + K+L SL+ P S +S +
Sbjct: 2 RGY-LITFEGPDGAGKTTVINEIIKQLPQSLQERTLVTREPGGSKISENIRTIILDPENK 60
Query: 99 EKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDL 157
E D ++LL Y + + ++ I+ L VV+ DRF S+ AY + ++
Sbjct: 61 EMDDRTEALL---YAAQRSQHVSEVIRPALAAGKVVLSDRFIDSSLAYQGVGRNLGIEEV 117
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFT---LEENEL----KKNA 210
K I + ++PDL I+L + A+ L R+ + + LE+ ++ K A
Sbjct: 118 K------QINDFGTGGLEPDLTIFLDLDPAVGLARIEKERAGQEDRLEQEKIDFHNKVYA 171
Query: 211 KFRELL 216
+RELL
Sbjct: 172 GYRELL 177
>gi|195383450|ref|XP_002050439.1| GJ22153 [Drosophila virilis]
gi|194145236|gb|EDW61632.1| GJ22153 [Drosophila virilis]
Length = 211
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 32/166 (19%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFD 102
+++ LIVFEG D CGK+ ++ + + L +ST ++++ L+ +
Sbjct: 4 NKRGALIVFEGCDRCGKTTQNRQLFELLTGKGVDTMQTNFPDRSTAIGNVINHYLQNNQE 63
Query: 103 AHDSLLRRAYYSLGNYIAAQDIKQD-LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
D ++ +S + IK+D L V+ DR+ +S AY +A L N
Sbjct: 64 LSDEVI-HLLFSANRWERMNSIKKDLLAGTTVICDRYAYSGVAYSVAKGLDFN------- 115
Query: 162 EDDDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE 205
+ W + L+KPD V YL + L+ R N+ E E
Sbjct: 116 -----WCWAPEIGLLKPDAVFYLKATP----DELTTRGNYGEERYE 152
>gi|390933755|ref|YP_006391260.1| thymidylate kinase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389569256|gb|AFK85661.1| Thymidylate kinase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 205
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 34/211 (16%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKL------KASLKSTPPSSIMS-LREK-FDAHDSLL 108
K LI FEG+DG GK+ + K L L+ ++I +RE D ++++
Sbjct: 3 KGKLITFEGIDGSGKTTQINLLKKYLLEIGRDIVVLREPGGTAIGEKIREILLDKKNNIV 62
Query: 109 RRAYYSLGNYIAAQDIKQDL-----QKQPVVMDRFWHSTSAY-----GMANELVKNSDLK 158
A L A+ +K+ + + V++DRF S+ Y G+ E+V
Sbjct: 63 PSAEALLYAASRAELVKEVIIPSLNDGKIVILDRFVDSSIVYQGYARGLGVEVV------ 116
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT 218
++I S D + PDL +YL + L R+ RRK+ E E + +F E +
Sbjct: 117 -----EEINSIAVDGLVPDLTVYLDIKPKDTLMRIDRRKDKDRLEIE---DVQFHEKVYE 168
Query: 219 IYRNM--NNPELVFVDNSEKSVHESSNDIVE 247
Y N+ + P F+ ++ ++ I++
Sbjct: 169 GYMNLIKSRPGRYFIVDATHDIYHIQKAIID 199
>gi|433451897|ref|ZP_20412874.1| thymidylate kinase [Mycoplasma sp. G5847]
gi|431933628|gb|ELK20195.1| thymidylate kinase [Mycoplasma sp. G5847]
Length = 213
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 101/208 (48%), Gaps = 27/208 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIM---SLREKFDAHDSLLRRAY 112
I FEG+DG GK+ V ++L+ L + P M +R+ + + A+
Sbjct: 2 FITFEGMDGSGKTTALLKVKEELERLNYQVLVTREPGGEMIAEQIRQIILDNKNQNMDAW 61
Query: 113 YSLGNYIAAQD------IKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSDLKLPDEDD 164
+IA+++ IK LQK +V+ DRF STSAY G A +N + L ++
Sbjct: 62 TEALLFIASRNQHLQKVIKPALQKNIIVISDRFIDSTSAYQGSA----RNIGVNLVNQVQ 117
Query: 165 DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL-KKNAKFRELLTTIYRNM 223
I KD + PDL ++ VS + +R+ R + +N L K+ + F++ + Y +
Sbjct: 118 QIV--LKDCL-PDLTLFFDVSFSEAEKRMKIRGENS--KNRLDKEQSDFKQKVYQGYLEL 172
Query: 224 --NNPELVFVDNSEKSVHESSNDIVELI 249
NNPE + V ++ K + + + +++I
Sbjct: 173 VKNNPERIKVIDANKDIDQVYDQAIKII 200
>gi|452851195|ref|YP_007492879.1| Thymidylate kinase [Desulfovibrio piezophilus]
gi|451894849|emb|CCH47728.1| Thymidylate kinase [Desulfovibrio piezophilus]
Length = 211
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 33/172 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGN-- 117
I FEG++G GK+ T K++ L S +++L LR+ + N
Sbjct: 2 FITFEGIEGTGKT----TQIAKVEKYLTSLGKDVLLTLEPGGSRVGQELRKMLLHVENQD 57
Query: 118 ---------YIA------AQDIKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSDLKLP 160
Y+A +Q I+ +L VV+ DRF ST Y G L D K+
Sbjct: 58 ITPQTELFLYLADRAQHVSQIIRPNLAAGKVVLCDRFADSTIVYQGFGRGL----DTKVL 113
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKF 212
+ +D+ D + PDL I L + + LQR + R LEEN+ + +F
Sbjct: 114 QQLNDV---AVDGLWPDLTILLDIDPEVGLQRANSR---NLEENKTNEEGRF 159
>gi|409095120|ref|ZP_11215144.1| thymidylate kinase [Thermococcus zilligii AN1]
Length = 208
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 53/221 (23%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGN-- 117
IV EG+DG GKS T AK L + +++ A L+RR + G
Sbjct: 4 FIVLEGIDGAGKS----TQAKMLAEWFEKRGYEVVLTKEPTDTAFGKLIRRLVLTGGREG 59
Query: 118 -------------YIAAQD--------IKQDLQKQPVVM-DRFWHSTSAYGMANELVKNS 155
+ A D I+ L+ VV+ DR+++S+ AY A L
Sbjct: 60 IIDGARISHEAEALLFAADRAEHVDKLIRPSLEAGKVVISDRYFYSSLAYQWARGL---- 115
Query: 156 DLKLPDEDDDIYSWPKDL----MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK 211
DL+ W DL ++PDL + L + ++R++RR ++E K A+
Sbjct: 116 DLE----------WLIDLNRFAIRPDLAVLLDLPVKESMRRINRRSL----KSEFDKIAE 161
Query: 212 FRELLTTIYRNMNN--PELVFVDNSEKSVHESSNDIVELIH 250
+ + Y + PE+ V N++ S+ + NDIV LI
Sbjct: 162 LQRKVRENYLKLVEMFPEMRIV-NAQNSIEDIHNDIVGLIE 201
>gi|305663476|ref|YP_003859764.1| thymidylate kinase [Ignisphaera aggregans DSM 17230]
gi|304378045|gb|ADM27884.1| thymidylate kinase [Ignisphaera aggregans DSM 17230]
Length = 203
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 33/206 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLR---EKF--DAHDSLLRR-AYY 113
IV EG+DG GK+ T+AK L L+ +I + +F D +RR AY
Sbjct: 9 FIVLEGIDGAGKT----TIAKMLLDDLERNGYRTIYTFEPWTTRFVEDLKSLGMRRDAYI 64
Query: 114 SLGNYIAAQDIKQDLQKQP-------VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDI 166
Y A + + +P VV DR+++S+ AY S + +P D I
Sbjct: 65 DALIYAADRLVHVKEVIEPAIRDGYIVVCDRYFYSSVAY--------QSAMGVPM--DWI 114
Query: 167 YSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL-LTTIYRNMNN 225
+ +KPDL IYL V I + R K+ E E K RE+ L + RNM
Sbjct: 115 ITLNMFALKPDLAIYLDVEPEIGIARKRGYKSRFPEYEEYGILRKAREIYLEMVRRNM-- 172
Query: 226 PELVFVDNSEKSVHESSNDIVELIHN 251
LV++ + + + + D+ +++
Sbjct: 173 --LVYI-YAGRDIGDVYRDVRNIVYR 195
>gi|386362193|ref|YP_006071524.1| thymidylate kinase [Streptococcus pyogenes Alab49]
gi|350276602|gb|AEQ23970.1| thymidylate kinase [Streptococcus pyogenes Alab49]
Length = 211
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 33/156 (21%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFD-AHDSLLRRAYYSLGN- 117
LI EG DG GK+ TV ++L LK I++ RE A +R + +
Sbjct: 6 LITVEGPDGAGKT----TVLEQLIPLLKQKVAQEILTTREPGGVAISEYIRELILDINHT 61
Query: 118 ----------YIAAQDIKQDL---------QKQPVVMDRFWHSTSAYGMANELVKNSDLK 158
YIAA+ +Q L Q V +DRF S+ AY A + +D++
Sbjct: 62 TMDPKTELLLYIAAR--RQHLVEKVLPALEAGQLVFIDRFIDSSVAYQGAGRGLTKADIQ 119
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLS 194
+E + D ++PDL +Y V I L R++
Sbjct: 120 WLNE------FATDGLEPDLTLYFDVPSEIGLARIN 149
>gi|50288903|ref|XP_446881.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526190|emb|CAG59814.1| unnamed protein product [Candida glabrata]
Length = 218
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 39/215 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA-SLKSTPP------SSIMSLREKF---------DA 103
LI+ EGLD GK+ +A++L+ LK S I L ++ D
Sbjct: 8 LILIEGLDRTGKTTQVDALAERLRGCGLKVVAAKFPNRESEIGQLINRYLTNRDFQLPDQ 67
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
LL +S + +++KQ L VV+DR+ S AY A DL+ +
Sbjct: 68 AVHLL----FSANRWEYIEELKQQLNDGYCVVLDRYVFSGVAYSAAKG-TPGMDLQWCLQ 122
Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-----LKKNAKFRELLT 217
D K L+KPDL ++LT + + ++ R F E E LK KF E
Sbjct: 123 PD------KGLLKPDLTLFLTNEDR---ESIANRAGFGEERYEDSDFQLKVKQKFHE--- 170
Query: 218 TIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
+ EL V+ + K + + S +I ++I L
Sbjct: 171 AFHAYCQEGELRTVNVTGKGIEQVSAEIWDVIEPL 205
>gi|326428009|gb|EGD73579.1| thymidylate kinase [Salpingoeca sp. ATCC 50818]
Length = 213
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 41/191 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSS--IMSLREKF------- 101
R+ LIV EG D CGKS + + +KL +A L P S I + +K+
Sbjct: 3 RRGVLIVLEGTDRCGKSTQCKLLVEKLASLGHEAKLMRFPERSTVIGGVIDKYLRKEIEL 62
Query: 102 DAHDSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHS----TSAYGMANELVKNSD 156
D H + L +S + +KQ L+ +V+DR+ S TSA G+ + K+ D
Sbjct: 63 DDHAAHL---LFSANRWELVSQMKQALKSGVSLVIDRYAFSGVAFTSAKGLDMDWCKSPD 119
Query: 157 LKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLS-RRKNFTLEENELKKNAKFREL 215
LP PDL I+L + +R+ + + + E + K AK+ +L
Sbjct: 120 ANLP--------------SPDLHIHLELDPTEAAKRVGFGSERYEVTEFQAKVKAKYEDL 165
Query: 216 LTTIYRNMNNP 226
Y +M P
Sbjct: 166 ----YASMTRP 172
>gi|109101748|ref|XP_001094132.1| PREDICTED: thymidylate kinase-like isoform 2 [Macaca mulatta]
Length = 212
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 45/208 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + + L A+ +ST ++S L +K D
Sbjct: 4 RRGALIVLEGVDRAGKSTQSRKLVETLCAAGHRAELLRFPERSTEIGKLLSSYLEKKSDV 63
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +++DR+ S A+ A E K D+
Sbjct: 64 EDHAV-HLLFSANRWEQVPLIKEKLSQGVTLIVDRYAFSGVAFTGAKENFSLDWCKQPDV 122
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
LP KPDLV++L ++L ++R + E E N F+E
Sbjct: 123 GLP--------------KPDLVLFLQ----LQLADAAKRGAYGHERYE---NRAFQERAL 161
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
+ + N ++V S ++VHE
Sbjct: 162 QCFHQLMRDTTLNWKMVDASKSIEAVHE 189
>gi|209517025|ref|ZP_03265873.1| dTMP kinase [Burkholderia sp. H160]
gi|209502556|gb|EEA02564.1| dTMP kinase [Burkholderia sp. H160]
Length = 206
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 32/213 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS----------------LREKFDA 103
I FEG+DG GK+ ++L+A L + + +M+ L +K D
Sbjct: 6 FITFEGIDGAGKTTHLGWFRERLEAKLAPSGRAVVMTREPGGTPLGEQIREIVLHQKMDL 65
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLP-D 161
L ++L A+ I+ L + V+ DRF +T AY + LP D
Sbjct: 66 ETEAL--LMFALRRQHLAEVIEPALARGDWVLSDRFTDATFAY-------QGGGRGLPRD 116
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY- 220
+ + + W + +PDL + + A+ +R S +N E+E +A F E Y
Sbjct: 117 KLEALERWVQGGFQPDLTVLFDLPPAVANERRSAARNPDRFESE---SAAFFERTRAEYM 173
Query: 221 -RNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
R P + +S +S+ + ELI L
Sbjct: 174 RRAEEAPHRFAIIDSSQSIARIQKQLDELIAML 206
>gi|156096007|ref|XP_001614038.1| thymidylate kinase [Plasmodium vivax Sal-1]
gi|148802912|gb|EDL44311.1| thymidylate kinase, putative [Plasmodium vivax]
Length = 219
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 28/153 (18%)
Query: 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS----------LKSTPPSSI 94
TND G +K IVFEGLD GKS S+ + + L+ + TP I
Sbjct: 8 TND-----GTKKKGKFIVFEGLDRSGKSTQSKLLVEHLRRKNVEVNHLCFPNRETPTGQI 62
Query: 95 MS--LREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQP-VVMDRFWHSTSAYGMANEL 151
++ L+ + D + + +S + +IK+ L VV DR+ +S AY
Sbjct: 63 IAKYLKMQSDMTNETI-HLLFSANRWELMGEIKRLLASGVWVVCDRYAYSGVAYSAGALK 121
Query: 152 VKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTV 184
+ + PD+ L+KPD+V YL V
Sbjct: 122 LSKTWCMNPDQ---------GLIKPDVVFYLNV 145
>gi|254507623|ref|ZP_05119756.1| thymidylate kinase [Vibrio parahaemolyticus 16]
gi|219549510|gb|EED26502.1| thymidylate kinase [Vibrio parahaemolyticus 16]
Length = 210
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 85/206 (41%), Gaps = 32/206 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS----LKSTPPSSIMSLREKF-----DAHDS-LLR 109
IV EGL+G GKS V + LK + +K+T L EK HD +L+
Sbjct: 6 FIVIEGLEGAGKSTAINAVMETLKQAGVERIKNTREPGGTVLAEKLRTLVKQEHDGEILQ 65
Query: 110 RAYYSLGNYIAAQDIKQDLQKQP------VVMDRFWHSTSAY-GMANELVKNS--DLKLP 160
L Y A + +++ K VV DR S+ AY G ++ K + LK
Sbjct: 66 DMTELLLMYAARVQLVENVIKPALESGTWVVGDRHDMSSQAYQGGGRQIAKETMASLKQT 125
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY 220
D KPDL IYL + + L+R R E K + F + Y
Sbjct: 126 TLGD---------FKPDLTIYLDLDPRVGLERARGRGELDRIE---KMDMSFFDRTRERY 173
Query: 221 RNMNNP-ELVFVDNSEKSVHESSNDI 245
M N E V V N+E+++ + + DI
Sbjct: 174 LEMANADESVMVVNAEQTIDKVAADI 199
>gi|405119073|gb|AFR93846.1| thymidylate kinase [Cryptococcus neoformans var. grubii H99]
Length = 217
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 40/181 (22%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMSLREKFDAH------- 104
+ IVFEGLD CGKS + ++L +A L+ P + + + DA+
Sbjct: 6 RGAFIVFEGLDRCGKSTQVDRLVQRLEHQGHRARLQKFPDRT-TQIGKMIDAYLQSKTEI 64
Query: 105 DSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
D +S + + I++DL V+ DR+ S A+ +A L + L+ PD
Sbjct: 65 DDRAIHLLFSANRWECSATIRRDLANGVTVIADRYAFSGIAFSVAKGLPFDFCLQ-PD-- 121
Query: 164 DDIYSWPKDLMKPDLVIYLTVS---------------EAIRLQRLSRRKNFTLEENELKK 208
L PD+ +YLT+S E++ +Q+ + R+ F L +E+KK
Sbjct: 122 -------AGLPLPDVTLYLTLSPEAAAKRSAYGEERYESVSVQQ-AVRQQFKLVADEIKK 173
Query: 209 N 209
Sbjct: 174 R 174
>gi|268611868|ref|ZP_06145595.1| putative thymidylate kinase [Ruminococcus flavefaciens FD-1]
Length = 224
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 35/168 (20%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKA--------SLKSTPPSSIMSLREKFDAH---- 104
K LIV EGLDG GK+ + + +KLK S S + +R D
Sbjct: 2 KGKLIVIEGLDGSGKATQTALLCEKLKTLGVEFDHFSFPDYNSESSLLVRMYLDGKFGDN 61
Query: 105 ----DSLLRRAYYSLGNYIAAQDIKQDLQKQP--VVMDRFWHSTSAYGMANELVKNSDLK 158
+ +++ Y + + QD + +V DR+ S + + + K
Sbjct: 62 AAEVNPYAASCFFACDRYASFRTQWQDKYEGGHIIVCDRYTTSNAVHQCS---------K 112
Query: 159 LPD-EDDDIYSWPKD-------LMKPDLVIYLTVSEAIRLQRLSRRKN 198
LPD E DD +W D L +PD VIYL V I + L +R N
Sbjct: 113 LPDGEWDDFVNWLFDFEYRKIGLPEPDAVIYLRVDPEIGQELLKKRYN 160
>gi|206896205|ref|YP_002246823.1| thymidylate kinase [Coprothermobacter proteolyticus DSM 5265]
gi|238057696|sp|B5Y7S6.1|KTHY_COPPD RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|206738822|gb|ACI17900.1| thymidylate kinase [Coprothermobacter proteolyticus DSM 5265]
Length = 193
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 74/183 (40%), Gaps = 37/183 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--------- 110
IV EG+DGCGKS TVA L A + P + E D L R
Sbjct: 2 FIVVEGIDGCGKS----TVASLLAAEIGKKRP--VFHTFEPGHVRDGLYRELIMENVDNP 55
Query: 111 -AYYSLGNYIAAQDIKQDL-----QKQPVVMDRFWHSTSAY-----GMANELVKNSDLKL 159
+L A+ +K+ + + + VV +R+ ST AY G+ EL+ +
Sbjct: 56 FVVAALFTIDRAEHVKKMIKPALAKGEWVVCERYADSTLAYQGYGMGLDKELINRMN--- 112
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTI 219
++ I D + PD + YL + + L RL ++ LE L+ + RE I
Sbjct: 113 ---EEAI-----DGLWPDKIFYLDIEPHLALARLQNKEKDALEGQGLEFLQRVREGYEEI 164
Query: 220 YRN 222
R
Sbjct: 165 ART 167
>gi|363750532|ref|XP_003645483.1| hypothetical protein Ecym_3163 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889117|gb|AET38666.1| Hypothetical protein Ecym_3163 [Eremothecium cymbalariae
DBVPG#7215]
Length = 217
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 22/205 (10%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLK--ASL-----KSTPPSSIMS---LREKFDAHD 105
R+ LI+ EGLD GKS + + ++L+ A L ++TP ++ +E F+ D
Sbjct: 2 RRGRLILIEGLDRTGKSTQATLLLQRLQPNAQLIKFPDRTTPIGMLIDKYLTQETFELPD 61
Query: 106 SLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDD 165
+ + + A+ + L V++DR+ +S AY A + DL + D
Sbjct: 62 QAAHLLFSANRWELGARIKELLLIGTHVILDRYVYSGIAYSAAKN-IPGMDLAWCFQPD- 119
Query: 166 IYSWPKDLMKPDLVIYLTVSE--AIRLQRLSRRKNFTLEENELKKN--AKFRELLTTI-Y 220
K L+KPDL I+ E L+ S N E E ++ A+F+++ + +
Sbjct: 120 -----KGLVKPDLTIFFLHDEKHGHELENRSGYGNERYERVEFQRAVLAQFQDMFEQLEH 174
Query: 221 RNMNNPELVFVDNSEKSVHESSNDI 245
LV + S KS+ +ND+
Sbjct: 175 SGYREKHLVTLQVSGKSIDSVANDV 199
>gi|387825245|ref|YP_005824716.1| thymidylate kinase [Francisella cf. novicida 3523]
gi|332184711|gb|AEE26965.1| Thymidylate kinase [Francisella cf. novicida 3523]
Length = 209
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSI--------MSLREKFDAH--- 104
IV EGLDG GKS V K L+ A++ + P + L K+D
Sbjct: 5 FIVIEGLDGAGKSTAINFVRKYLEQNSLAAIYTREPGGTKIAEELRNLVLHNKYDEEIHS 64
Query: 105 DSLLRRAYYSLGNY---IAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
DS L Y + + A +++ + VV DRF+ S+ AY V+ S K+
Sbjct: 65 DSELLMIYAGRVQHYRNLIAPALEKGIN---VVSDRFYWSSMAYQGGGRGVELS--KIRA 119
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSR 195
+D+ + +PDLVIYL + + LQR +
Sbjct: 120 LNDNFLNG----CEPDLVIYLDIDPMLGLQRAQK 149
>gi|355565357|gb|EHH21846.1| hypothetical protein EGK_05000, partial [Macaca mulatta]
Length = 211
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 45/208 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + + L A+ +ST ++S L +K D
Sbjct: 3 RRGALIVLEGVDRAGKSTQSRKLVETLCAAGHRAELLRFPERSTEIGKLLSSYLEKKSDV 62
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +++DR+ S A+ A E K D+
Sbjct: 63 EDHAV-HLLFSANRWEQVPLIKEKLSQGVTLIVDRYAFSGVAFTGAKENFSLDWCKQPDV 121
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
LP KPDLV++L ++L ++R + E E N F+E
Sbjct: 122 GLP--------------KPDLVLFLQ----LQLADAAKRGAYGHERYE---NRAFQERAL 160
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
+ + N ++V S ++VHE
Sbjct: 161 QCFHQLMRDTTLNWKMVDASKSIEAVHE 188
>gi|297539333|ref|YP_003675102.1| deoxynucleoside kinase [Methylotenera versatilis 301]
gi|297258680|gb|ADI30525.1| deoxynucleoside kinase [Methylotenera versatilis 301]
Length = 215
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 27/153 (17%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKF-DAHD-SLLRRAYYS 114
KYP IV EG GCGK+ ++ +A K S + L + DA +L + ++
Sbjct: 6 KYPYIVVEGPIGCGKTTLAKMLADKFPVDYLSEKAEANPFLPRFYQDAQRYALPTQLFFL 65
Query: 115 LGNYIAAQDIKQ-DLQKQPVVMDRFWHS----------TSAYGMANELVKNSDLKLPDED 163
+D+ Q D+ +P++ D F Y + + + ++ LK P
Sbjct: 66 FQRANQMKDLSQRDMFAKPIIADFFLEKDPIFARLNLDDEEYALYHNIYQHLQLKAP--- 122
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRR 196
KPDLVIYL ++R+ R
Sbjct: 123 -----------KPDLVIYLQTPIDALMERIEER 144
>gi|443656586|ref|ZP_21131708.1| thymidylate kinase [Microcystis aeruginosa DIANCHI905]
gi|159028337|emb|CAO87235.1| tmk [Microcystis aeruginosa PCC 7806]
gi|443333384|gb|ELS47947.1| thymidylate kinase [Microcystis aeruginosa DIANCHI905]
Length = 207
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 35/185 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMS--LRE------------- 99
IVFEG+DG G S ++ + + KA L P ++ +RE
Sbjct: 5 FIVFEGIDGSGTSTQAKLLQEYFFKRGEKAVLSPEPSEGVIGRLIREIMQTNLISIQEQN 64
Query: 100 KFDAHDSLL---RRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSD 156
+FD + L R Y+ ++ + Q V+ R++ S+ AY N
Sbjct: 65 QFDRQMAYLFAADRHYHLYNDHDGVFKLIHQEQTH-VITTRYYFSSLAYNCNN------- 116
Query: 157 LKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL 216
P+E + + PD+VIY+ V I L R+ R + E + +K K R++
Sbjct: 117 ---PEEFAFVRQLNQHFPNPDIVIYIDVIPDISLARIKNRAITEVYEKQ-EKLMKVRQMF 172
Query: 217 TTIYR 221
I++
Sbjct: 173 IEIFK 177
>gi|425434731|ref|ZP_18815195.1| Thymidylate kinase [Microcystis aeruginosa PCC 9432]
gi|425451205|ref|ZP_18831027.1| Thymidylate kinase [Microcystis aeruginosa PCC 7941]
gi|389675764|emb|CCH95152.1| Thymidylate kinase [Microcystis aeruginosa PCC 9432]
gi|389767586|emb|CCI07044.1| Thymidylate kinase [Microcystis aeruginosa PCC 7941]
Length = 207
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 35/185 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMS--LRE------------- 99
IVFEG+DG G S ++ + + KA L P ++ +RE
Sbjct: 5 FIVFEGIDGSGTSTQAKLLQEYFFKRGEKAVLSPEPSEGVIGRLIREIMQTNLISIQDQN 64
Query: 100 KFDAHDSLL---RRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSD 156
+FD + L R Y+ ++ + Q V+ R++ S+ AY N
Sbjct: 65 QFDRQMAYLFAADRHYHLYNDHDGVFKLIHQEQTH-VITTRYYFSSLAYNCNN------- 116
Query: 157 LKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL 216
P+E + + PD+VIY+ V I L R+ R + E + +K K R++
Sbjct: 117 ---PEEFAFVRQLNQHFPNPDIVIYIDVIPDISLARIKNRAITEVYEKQ-EKLMKVRQMF 172
Query: 217 TTIYR 221
I++
Sbjct: 173 IEIFK 177
>gi|408790734|ref|ZP_11202347.1| Thymidylate kinase [Lactobacillus florum 2F]
gi|408519923|gb|EKK20036.1| Thymidylate kinase [Lactobacillus florum 2F]
Length = 212
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 33/211 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAK----KLKASLKSTPPSSIMSLREK-----FDAHDSLLRR 110
LI FEGLDG GK+ Q V + +L A L +T L E+ FD +++L R
Sbjct: 5 LITFEGLDGSGKTTVMQQVVQDLIPRLGAQLVTTREPGGDQLAEQIRSFIFDHNNALDPR 64
Query: 111 AYYSLGNYIAAQDIKQDLQK---------QPVVMDRFWHSTSAY-GMANELVKNSDLKLP 160
+ L + AA+ +Q L + Q ++ DR+ S+ AY G +L + L
Sbjct: 65 SMALL--FAAAR--RQHLTRRILPALHNNQLILCDRYLDSSLAYQGGGQQLGIENIL--- 117
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY 220
++ + + + P L YL + A+ L+R+ R+ + ++ F + T Y
Sbjct: 118 ----EMNQFATEGVLPTLTFYLKLPVAVALERIQTRET-KQQNQLDQQQRDFYVRVQTAY 172
Query: 221 RNM--NNPELVFVDNSEKSVHESSNDIVELI 249
+ NNP+ + V ++ + V + ++ +I
Sbjct: 173 DKIAANNPQRMVVIDATQPVAVVTQKVLAVI 203
>gi|406038399|ref|ZP_11045754.1| polyphosphate-AMP phosphotransferase [Acinetobacter ursingii DSM
16037 = CIP 107286]
Length = 472
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 25/173 (14%)
Query: 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYY 113
D+RK +IVFEG+D GK + + + K+L +S EK++ L R +
Sbjct: 276 DERKV-VIVFEGMDAAGKGGSIKRIIKRLDPREYDI---FTISAPEKYELRHPYLWRFWT 331
Query: 114 SLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDL 173
L + DI+ + DR W+ S+L+ D+I + KDL
Sbjct: 332 KLDH---CSDIR--------IFDRSWYGRVLVERVEGFA--SELEWQRAYDEINRFEKDL 378
Query: 174 MKPDLVI---YLTVSEAIRLQRLSRR-----KNFTLEENELKKNAKFRELLTT 218
+ VI +L++S+ + QR R K F + E++ + +K+ E L
Sbjct: 379 IDSQTVIIKFWLSISKDEQEQRFHAREKTPHKRFKITEDDWRNRSKWNEYLNA 431
>gi|331220445|ref|XP_003322898.1| thymidylate kinase [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309301888|gb|EFP78479.1| thymidylate kinase [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 228
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 89/205 (43%), Gaps = 27/205 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP----PSSIMSLREKFDAH-------DSLL 108
IVFEGLD GKS + + +KLK + ++ P ++ + +++ D
Sbjct: 10 FIVFEGLDRSGKSTQCRRLEEKLKQAGRTVESIRFPDRTTAIGQMINSYLCQTSELDDHA 69
Query: 109 RRAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
++ + + DI L+ ++ DR+ S +A+ A ++ P E + I
Sbjct: 70 IHLLFAANRWEKSADIHTTLRSGTTIICDRYAFSGTAFTAA-----KFSIRTPPEPEPIA 124
Query: 168 SWP---KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN 224
+ + L PDLVI+LT+ + Q L R+ F NE +N + ++ + + +
Sbjct: 125 TLACADRGLPLPDLVIFLTLGD----QSLDNREGFG---NERYENTELQDEVKRQFTQVV 177
Query: 225 NPELVFVDNSEKSVHESSNDIVELI 249
P + ++ V+ + +E +
Sbjct: 178 RPYFEEIHGRDRWVNVDATGTIEEV 202
>gi|208780179|ref|ZP_03247521.1| thymidylate kinase [Francisella novicida FTG]
gi|208743828|gb|EDZ90130.1| thymidylate kinase [Francisella novicida FTG]
Length = 209
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSI--------MSLREKFDAH--- 104
IV EGLDG GKS V K L+ A++ + P + L K+D
Sbjct: 5 FIVIEGLDGAGKSTAISFVRKYLEKNNLAAIYTREPGGTKIAEELRNLVLHNKYDEEIHS 64
Query: 105 DSLLRRAYYSLGNY---IAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
DS L Y + + A +++ + VV DRF+ S+ AY V+ S K+
Sbjct: 65 DSELLMIYAGRVQHYRNLIAPALEKGIN---VVSDRFYWSSMAYQGGGRGVELS--KIRA 119
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSR 195
+D+ + +PDLVIYL + + LQR +
Sbjct: 120 LNDNFLNG----CEPDLVIYLDIDPMLGLQRAQK 149
>gi|118498162|ref|YP_899212.1| thymidylate kinase [Francisella novicida U112]
gi|194324335|ref|ZP_03058108.1| thymidylate kinase [Francisella novicida FTE]
gi|254373508|ref|ZP_04988995.1| thymidylate kinase [Francisella tularensis subsp. novicida
GA99-3549]
gi|254374970|ref|ZP_04990450.1| thymidylate kinase [Francisella novicida GA99-3548]
gi|385793565|ref|YP_005826541.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|166221743|sp|A0Q893.1|KTHY_FRATN RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|118424068|gb|ABK90458.1| thymidylate kinase [Francisella novicida U112]
gi|151571233|gb|EDN36887.1| thymidylate kinase [Francisella novicida GA99-3549]
gi|151572688|gb|EDN38342.1| thymidylate kinase [Francisella novicida GA99-3548]
gi|194321400|gb|EDX18885.1| thymidylate kinase [Francisella tularensis subsp. novicida FTE]
gi|332678890|gb|AEE88019.1| Thymidylate kinase [Francisella cf. novicida Fx1]
Length = 209
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSI--------MSLREKFDAH--- 104
IV EGLDG GKS V K L+ A++ + P + L K+D
Sbjct: 5 FIVIEGLDGAGKSTAISFVRKYLEKNNLAAIYTREPGGTKIAEELRNLVLHNKYDEEIHS 64
Query: 105 DSLLRRAYYSLGNY---IAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
DS L Y + + A +++ + VV DRF+ S+ AY V+ S K+
Sbjct: 65 DSELLMIYAGRVQHYRNLIAPALEKGIN---VVSDRFYWSSMAYQGGGRGVELS--KIRA 119
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSR 195
+D+ + +PDLVIYL + + LQR +
Sbjct: 120 LNDNFLNG----CEPDLVIYLDIDPILGLQRAQK 149
>gi|172036089|ref|YP_001802590.1| putative thymidylate kinase [Cyanothece sp. ATCC 51142]
gi|354552892|ref|ZP_08972199.1| thymidylate kinase [Cyanothece sp. ATCC 51472]
gi|171697543|gb|ACB50524.1| putative thymidylate kinase [Cyanothece sp. ATCC 51142]
gi|353554722|gb|EHC24111.1| thymidylate kinase [Cyanothece sp. ATCC 51472]
Length = 208
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 44/162 (27%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSL---------------------- 97
IV EG+D GK+ T A++LK L + S+I+S
Sbjct: 5 FIVLEGIDKAGKT----TQAERLKRYLINQGDSAIISSEPTEGVIGELIRKAMQSPVFKI 60
Query: 98 --REKFDAHDSLLRRA--YYSLGNYIAA--QDIKQDLQKQPVVMDRFWHSTSAYGMANEL 151
+ KFD + L A +Y L N + + I+QD V+ R++ S+ AY N+
Sbjct: 61 NDKAKFDQQMAYLFAADRHYHLYNEVDGVYKLIQQD--HYHVIATRYYFSSLAYNSNNQ- 117
Query: 152 VKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL 193
+E + +Y K PDLVIYL + I L RL
Sbjct: 118 ---------EEFNFVYGLNKRFPNPDLVIYLDIPLDIALSRL 150
>gi|284161466|ref|YP_003400089.1| thymidylate kinase [Archaeoglobus profundus DSM 5631]
gi|284011463|gb|ADB57416.1| thymidylate kinase [Archaeoglobus profundus DSM 5631]
Length = 199
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 42/218 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK------ASLKSTPPSSIMS-----LREKFDAHDSLL 108
LI EG+DG GK+ + + ++LK + K S L+E+ + + L
Sbjct: 2 LIAVEGIDGSGKTTIVRFLVEELKKRGYDVVAFKEPTDSEYGKKIRQILKERKISPEEEL 61
Query: 109 R-----RAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
+ R + N + A + V+MDR+++ST AY A L +
Sbjct: 62 KLFIKDREFNVRNNILPALK-----SGKVVIMDRYYYSTIAYQGALGL----------DI 106
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRL-SRRKNFTLEENELKKNAKFRELLTTIYRN 222
I + + KPDLVI L VS L+R+ ++RK E+ E + K R + ++ N
Sbjct: 107 GKIKTLNEQFPKPDLVIILDVSPETALKRIKAKRKPDRFEDLEYLR--KVRNIFLSLKNN 164
Query: 223 MNNPELVFVDNSEKSVHESSNDIVELI--HNLPMFKHS 258
+ V ++E+ + E D+++++ H FK S
Sbjct: 165 ------IVVIDAERDIEEVKRDVLKVVLEHLEKSFKRS 196
>gi|400406566|ref|YP_006589314.1| thymidylate kinase [secondary endosymbiont of Heteropsylla cubana]
gi|400364819|gb|AFP85886.1| thymidylate kinase [secondary endosymbiont of Heteropsylla cubana]
Length = 213
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 18/170 (10%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMSLREKFDAHDSLLR 109
I EGL+G GK++ + V K L+ TP + + K+ D ++
Sbjct: 5 FIAIEGLEGAGKTNAIKQVGKILQEQGVHKIVFTREPGGTPLAEALRTLVKYGIDDEVIT 64
Query: 110 RAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
L Y A + +++ K P V W T Y ++++ + + D + +
Sbjct: 65 HEAELLMLYAARVQVLENVIK-PAVTQGAWVVTDRYDLSSQAYQGGGRGI---DSGLLNT 120
Query: 170 PKDLM----KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL 215
+D + PDL +Y+ V+ +I L+R+ R + L+ E++ A F +
Sbjct: 121 LRDTILGNFYPDLTLYMDVAPSIGLKRVRSRTSGELDRIEVEPLAFFERI 170
>gi|146418297|ref|XP_001485114.1| hypothetical protein PGUG_02843 [Meyerozyma guilliermondii ATCC
6260]
gi|146390587|gb|EDK38745.1| hypothetical protein PGUG_02843 [Meyerozyma guilliermondii ATCC
6260]
Length = 191
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 78/182 (42%), Gaps = 45/182 (24%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL 115
R YP I+ G GCGK+ ++++ +L + S + R+ + +D +L
Sbjct: 3 RLYPNIIITGTPGCGKTSHAESLKDQLGEPYQHFNISDLAKERKCLEEYDE-------NL 55
Query: 116 GNYIAAQD-----IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
++ +D ++ D++K +V+D WH + P
Sbjct: 56 DTWVVDEDKLLDSLEPDMEKGGIVVD--WHCCEVF------------------------P 89
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRR--KNFTLEENELKKNAKFRELLTTIYRNMNNPEL 228
+ L+ DLV+ L +I QRL++R K+ ++EN + + +++ R+ PE+
Sbjct: 90 ERLI--DLVVVLRTDNSILHQRLTKRGYKDNKIQEN---LDCEIMQVILQEARDSYIPEI 144
Query: 229 VF 230
V
Sbjct: 145 VI 146
>gi|295676547|ref|YP_003605071.1| thymidylate kinase [Burkholderia sp. CCGE1002]
gi|295436390|gb|ADG15560.1| thymidylate kinase [Burkholderia sp. CCGE1002]
Length = 206
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 86/213 (40%), Gaps = 32/213 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS----------------LREKFDA 103
I FEG+DG GK+ ++L+A L + S +M+ L ++ D
Sbjct: 6 FITFEGIDGAGKTTHLGWFRERLEAKLAPSGRSVVMTREPGGTPLGEQIREIVLHQQMDL 65
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLP-D 161
L ++L A I+ L + V+ DRF +T AY + LP D
Sbjct: 66 ETEAL--LMFALRRQHLADVIEPALTRGDWVLSDRFTDATFAY-------QGGGRGLPRD 116
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY- 220
+ + + W + +PDL + + A+ +R S +N E+E +A F E Y
Sbjct: 117 KLETLERWVQGGFQPDLTVLFDLPPAVANERRSAARNPDRFESE---SAAFFERTRAEYM 173
Query: 221 -RNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
R P + +S +SV + ELI L
Sbjct: 174 RRAEEAPYRFAIIDSSQSVARIQKQLEELIATL 206
>gi|323526017|ref|YP_004228170.1| thymidylate kinase [Burkholderia sp. CCGE1001]
gi|323383019|gb|ADX55110.1| thymidylate kinase [Burkholderia sp. CCGE1001]
Length = 206
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 32/213 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS----------------LREKFDA 103
I FEG+DG GK+ ++L+ + +T S +M+ L +K D
Sbjct: 6 FITFEGIDGAGKTTHLAWFRERLEQKVAATGRSVVMTREPGGTPLGEQIREIVLHQKMDL 65
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLP-D 161
L ++L A+ I+ L + V+ DRF +T AY + LP D
Sbjct: 66 ETEAL--LMFALRRQHLAEVIEPALARGDWVLSDRFTDATFAY-------QGGGRGLPRD 116
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY- 220
+ + + W + +PDL + ++ I +R S ++ E+E +A F E Y
Sbjct: 117 KLETLERWVQGGFQPDLTVLFDLAPEIANERRSAARDPDRFESE---SAAFFERTRAEYL 173
Query: 221 -RNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
R P + +S +S+ + ELI NL
Sbjct: 174 RRAEEAPYRFAIIDSSQSIARIQKQLEELIVNL 206
>gi|187931061|ref|YP_001891045.1| thymidylate kinase [Francisella tularensis subsp. mediasiatica
FSC147]
gi|238691529|sp|B2SF22.1|KTHY_FRATM RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|187711970|gb|ACD30267.1| thymidylate kinase [Francisella tularensis subsp. mediasiatica
FSC147]
Length = 209
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSI--------MSLREKFDAH--- 104
IV EGLDG GKS V K L+ A++ + P + L K+D
Sbjct: 5 FIVIEGLDGAGKSTAISFVRKYLEKNNLAAIYTREPGGTKIAEELRNLVLHNKYDEEIHS 64
Query: 105 DSLLRRAYYSLGNY---IAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
DS L Y + + A +++ + VV DRF+ S+ AY V+ S K+
Sbjct: 65 DSELLMIYAGRVQHYRNLIAPALEKGIN---VVSDRFYWSSMAYQGGGRGVELS--KIRA 119
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSR 195
+D+ + +PDLVIYL + + LQR +
Sbjct: 120 LNDNFLNG----CEPDLVIYLDIDPILGLQRAQK 149
>gi|78188893|ref|YP_379231.1| thymidylate kinase [Chlorobium chlorochromatii CaD3]
gi|123579949|sp|Q3AS37.1|KTHY_CHLCH RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|78171092|gb|ABB28188.1| thymidylate kinase [Chlorobium chlorochromatii CaD3]
Length = 222
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 33/163 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK--STPPSSIMSLRE-----KFDAHDSLL---R 109
LI FEG+DG GKS T KL A LK STP ++SLRE ++ SLL R
Sbjct: 2 LITFEGIDGAGKS----TQVAKLVAYLKQQSTP---LLSLREPGGTPTAESIRSLLLDNR 54
Query: 110 RAYYSLGNYIAAQDIKQDL----------QKQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
++ + + + +L + + V++DRF+ ST+AY + L
Sbjct: 55 KSITPIAELLLFSASRAELVETLIRPALAEGKTVILDRFFDSTTAYQGHGRGISLEQLH- 113
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE 202
I + + PD+ YL + L+R R L+
Sbjct: 114 -----SIIALSTGDLLPDVTFYLDLEPEEALRRAFSRSGLPLD 151
>gi|428774343|ref|YP_007166131.1| thymidylate kinase [Cyanobacterium stanieri PCC 7202]
gi|428688622|gb|AFZ48482.1| thymidylate kinase [Cyanobacterium stanieri PCC 7202]
Length = 209
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 35/185 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTV----AKKLKASLKSTPPSS---------IMSLREKFDAHD- 105
IVFEG+DG G S +Q + K + S+ S PSS + + FD D
Sbjct: 8 FIVFEGVDGAGSSTQAQMLQDYFTKVGQKSVISPEPSSGPIGKLLRTFLGGKNDFDDQDL 67
Query: 106 --------SLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDL 157
R Y+ N D+ + + V+ R++ S+ AY +
Sbjct: 68 YDQQMAYLFAADRHYHLYNNLDGVYDL--NAKNIHVISTRYYFSSLAY----------NG 115
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
K + D + + PDLVIYL + + L+R+ R + + E + +K K RE +
Sbjct: 116 KTKKDYDFVSILNQKFPPPDLVIYLDIPVKLALERMENRPSKEIYETQ-EKLLKVRERFS 174
Query: 218 TIYRN 222
I+ N
Sbjct: 175 EIFAN 179
>gi|56707291|ref|YP_169187.1| thymidylate kinase [Francisella tularensis subsp. tularensis SCHU
S4]
gi|110669761|ref|YP_666318.1| thymidylate kinase [Francisella tularensis subsp. tularensis
FSC198]
gi|134301328|ref|YP_001121296.1| thymidylate kinase [Francisella tularensis subsp. tularensis
WY96-3418]
gi|254369973|ref|ZP_04985981.1| hypothetical protein FTBG_01572 [Francisella tularensis subsp.
tularensis FSC033]
gi|254874129|ref|ZP_05246839.1| thymidylate kinase [Francisella tularensis subsp. tularensis
MA00-2987]
gi|379716490|ref|YP_005304826.1| thymidylate kinase [Francisella tularensis subsp. tularensis
TIGB03]
gi|379725173|ref|YP_005317359.1| thymidylate kinase [Francisella tularensis subsp. tularensis
TI0902]
gi|385793875|ref|YP_005830281.1| thymidylate kinase [Francisella tularensis subsp. tularensis
NE061598]
gi|421751054|ref|ZP_16188112.1| thymidylate kinase [Francisella tularensis subsp. tularensis
AS_713]
gi|421752910|ref|ZP_16189920.1| thymidylate kinase [Francisella tularensis subsp. tularensis 831]
gi|421754727|ref|ZP_16191693.1| thymidylate kinase [Francisella tularensis subsp. tularensis
80700075]
gi|421756642|ref|ZP_16193545.1| thymidylate kinase [Francisella tularensis subsp. tularensis
80700103]
gi|421758509|ref|ZP_16195355.1| thymidylate kinase [Francisella tularensis subsp. tularensis
70102010]
gi|424673777|ref|ZP_18110708.1| thymidylate kinase [Francisella tularensis subsp. tularensis
70001275]
gi|73920819|sp|Q5NIF5.1|KTHY_FRATT RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|122971099|sp|Q14JV8.1|KTHY_FRAT1 RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|166221744|sp|A4IW74.1|KTHY_FRATW RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|56603783|emb|CAG44750.1| thymidylate kinase [Francisella tularensis subsp. tularensis SCHU
S4]
gi|110320094|emb|CAL08133.1| thymidylate kinase [Francisella tularensis subsp. tularensis
FSC198]
gi|134049105|gb|ABO46176.1| thymidylate kinase [Francisella tularensis subsp. tularensis
WY96-3418]
gi|151568219|gb|EDN33873.1| hypothetical protein FTBG_01572 [Francisella tularensis subsp.
tularensis FSC033]
gi|254840128|gb|EET18564.1| thymidylate kinase [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282158410|gb|ADA77801.1| thymidylate kinase [Francisella tularensis subsp. tularensis
NE061598]
gi|377826622|gb|AFB79870.1| Thymidylate kinase [Francisella tularensis subsp. tularensis
TI0902]
gi|377828167|gb|AFB78246.1| Thymidylate kinase [Francisella tularensis subsp. tularensis
TIGB03]
gi|409088929|gb|EKM88985.1| thymidylate kinase [Francisella tularensis subsp. tularensis 831]
gi|409089040|gb|EKM89094.1| thymidylate kinase [Francisella tularensis subsp. tularensis
AS_713]
gi|409090490|gb|EKM90506.1| thymidylate kinase [Francisella tularensis subsp. tularensis
80700075]
gi|409092201|gb|EKM92179.1| thymidylate kinase [Francisella tularensis subsp. tularensis
70102010]
gi|409093381|gb|EKM93327.1| thymidylate kinase [Francisella tularensis subsp. tularensis
80700103]
gi|417435552|gb|EKT90442.1| thymidylate kinase [Francisella tularensis subsp. tularensis
70001275]
Length = 209
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSI--------MSLREKFDAH--- 104
IV EGLDG GKS V K L+ A++ + P + L K+D
Sbjct: 5 FIVIEGLDGAGKSTAISFVRKYLEKNNLAAIYTREPGGTKIAEELRNLVLHNKYDEEIHS 64
Query: 105 DSLLRRAYYSLGNY---IAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
DS L Y + + A +++ + VV DRF+ S+ AY V+ S K+
Sbjct: 65 DSELLMIYAGRVQHYRNLIAPALEKGIN---VVSDRFYWSSMAYQGGGRGVELS--KIRA 119
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSR 195
+D+ + +PDLVIYL + + LQR +
Sbjct: 120 LNDNFLNG----CEPDLVIYLDIDPILGLQRAQK 149
>gi|89256933|ref|YP_514295.1| thymidylate kinase [Francisella tularensis subsp. holarctica LVS]
gi|156503123|ref|YP_001429188.1| thymidylate kinase [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|254368198|ref|ZP_04984218.1| thymidylate kinase [Francisella tularensis subsp. holarctica 257]
gi|254369798|ref|ZP_04985808.1| thymidylate kinase [Francisella tularensis subsp. holarctica
FSC022]
gi|290953993|ref|ZP_06558614.1| thymidylate kinase [Francisella tularensis subsp. holarctica URFT1]
gi|422939211|ref|YP_007012358.1| thymidylate kinase [Francisella tularensis subsp. holarctica
FSC200]
gi|423051300|ref|YP_007009734.1| thymidylate kinase [Francisella tularensis subsp. holarctica F92]
gi|122500313|sp|Q2A1V7.1|KTHY_FRATH RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|166221742|sp|A7NE29.1|KTHY_FRATF RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|89144764|emb|CAJ80099.1| thymidylate kinase [Francisella tularensis subsp. holarctica LVS]
gi|134254008|gb|EBA53102.1| thymidylate kinase [Francisella tularensis subsp. holarctica 257]
gi|156253726|gb|ABU62232.1| thymidylate kinase [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|157122757|gb|EDO66886.1| thymidylate kinase [Francisella tularensis subsp. holarctica
FSC022]
gi|407294362|gb|AFT93268.1| thymidylate kinase [Francisella tularensis subsp. holarctica
FSC200]
gi|421952022|gb|AFX71271.1| thymidylate kinase [Francisella tularensis subsp. holarctica F92]
Length = 209
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSI--------MSLREKFDAH--- 104
IV EGLDG GKS V K L+ A++ + P + L K+D
Sbjct: 5 FIVIEGLDGAGKSTAISFVRKYLEKNNLAAIYTREPGGTKIAEELRNLVLHNKYDEEIHS 64
Query: 105 DSLLRRAYYSLGNY---IAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
DS L Y + + A +++ + VV DRF+ S+ AY V+ S K+
Sbjct: 65 DSELLMIYAGRVQHYRNLIAPALEKGIN---VVSDRFYWSSMAYQGGGRGVELS--KIRA 119
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSR 195
+D+ + +PDLVIYL + + LQR +
Sbjct: 120 LNDNFLNG----CEPDLVIYLDIDPILGLQRAQK 149
>gi|303251157|ref|ZP_07337341.1| thymidylate kinase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|307251422|ref|ZP_07533336.1| Thymidylate kinase [Actinobacillus pleuropneumoniae serovar 4 str.
M62]
gi|307253501|ref|ZP_07535371.1| Thymidylate kinase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|302650008|gb|EFL80180.1| thymidylate kinase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306856506|gb|EFM88648.1| Thymidylate kinase [Actinobacillus pleuropneumoniae serovar 4 str.
M62]
gi|306859002|gb|EFM91045.1| Thymidylate kinase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
Length = 208
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 94/211 (44%), Gaps = 30/211 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS---------TPPSSIMSLREKFDAHDSLLRR 110
IV EGL+G GK+ Q + +L+ + KS TP + + K + +++ +
Sbjct: 5 FIVLEGLEGAGKTTAHQVILAQLEKAGKSVVQTREPGGTPLAEKLRHLIKHETEEAVSDK 64
Query: 111 AYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
A L Y A + +++ K P + + W + M+++ + ++ D +
Sbjct: 65 AEL-LMLYAARIQLVENVIK-PALAEGKWVLGDRHDMSSQAYQGGGRQI---DRHLLETL 119
Query: 171 KDLM----KPDLVIYLTVSEAIRLQRLSRRKNF-TLEENEL----KKNAKFRELLTTIYR 221
K+ + +PDL IYL + A+ L R R +E+ L + ++ EL
Sbjct: 120 KETVLGNFEPDLTIYLDIDPAVGLARARGRGELDRIEQQSLDFFYRTRQRYLEL------ 173
Query: 222 NMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
NN + V + N+E+S+ + + DI + + N
Sbjct: 174 TQNNEKAVII-NAEQSIEQVAADIQQAVENF 203
>gi|261866745|ref|YP_003254667.1| thymidylate kinase [Aggregatibacter actinomycetemcomitans D11S-1]
gi|415770079|ref|ZP_11484694.1| thymidylate kinase [Aggregatibacter actinomycetemcomitans D17P-2]
gi|261412077|gb|ACX81448.1| thymidylate kinase [Aggregatibacter actinomycetemcomitans D11S-1]
gi|348657112|gb|EGY74709.1| thymidylate kinase [Aggregatibacter actinomycetemcomitans D17P-2]
Length = 209
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 84/214 (39%), Gaps = 38/214 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMSLREKF---------DAHDS 106
IV EGL+G GKS Q V LK + ST L EK + D
Sbjct: 5 FIVIEGLEGAGKSTAHQCVVDTLKTLGIGEVISTREPGGTPLAEKLRHLIKHENEEPTDK 64
Query: 107 LLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAY-GMANELVKN--SDLKLPDE 162
Y+ + IK L Q + VV DR S+ AY G +L K+ S LK
Sbjct: 65 AELLMLYAARVQLVENVIKPALAQGKWVVGDRHDMSSQAYQGGGRQLGKDLLSSLKQTVL 124
Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-----LKKNAKFRELLT 217
D +PDL +YL + A+ L R R E + + A++ EL+
Sbjct: 125 SD---------FEPDLTLYLDIDPAVGLARARGRGELDRIEQQNPDFFHRTRARYLELVK 175
Query: 218 TIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
+NP+ V +D ++ V + DI + N
Sbjct: 176 ------DNPKAVIIDAAQ-PVEQVRADIQSAVKN 202
>gi|39938860|ref|NP_950626.1| thymidylate kinase [Onion yellows phytoplasma OY-M]
gi|39721969|dbj|BAD04459.1| thymidylate kinase [Onion yellows phytoplasma OY-M]
Length = 145
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLK-------STPPSSIMSLREKFDAH 104
+ ++ LIVFEGLDG GK+ ++ LK + S+ I L F
Sbjct: 11 IKGEKMIKLIVFEGLDGSGKTSLINSLQPHLKNPYQLYQGLGSSSLGKEIRGLFLNFQQV 70
Query: 105 DSLLRRAYYSLGNY--IAAQDIKQDLQ-KQPVVMDRFWHSTSAY 145
D L R Y SL N I A+ I L+ Q +++DR+ ST AY
Sbjct: 71 DY-LTRFYLSLANMAQIQAELIVSQLKNNQLIILDRWLPSTYAY 113
>gi|157363328|ref|YP_001470095.1| dTMP kinase [Thermotoga lettingae TMO]
gi|157313932|gb|ABV33031.1| dTMP kinase [Thermotoga lettingae TMO]
Length = 202
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 32/210 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP------PSSI--------MSLREKFDAHD 105
LI FEG+DG GK + LK K+ P P + L+ +F +
Sbjct: 2 LISFEGIDGSGKGTQLRLFLSYLKN--KNLPYIHVREPGGTELGEILREIVLKGQFQIYP 59
Query: 106 SLLRRAYYSLGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSDLKLPDED 163
+ + + +Q I L++ VV+ DRF S+ Y G+ EL P+
Sbjct: 60 KAELLLFLASRAQLVSQIILPALKENKVVVADRFIDSSVVYQGVGRELG-------PELV 112
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM 223
+ + + D +KPDL Y+ V L+ R++ F E+E +F + + Y +
Sbjct: 113 EKLNDFATDGLKPDLTFYIDVPVETALK---RKRIFDRIESE---GIEFLKKVRKAYLEL 166
Query: 224 NNPE-LVFVDNSEKSVHESSNDIVELIHNL 252
E +F+ N EK++ E ++I+ + L
Sbjct: 167 ARKEKRIFLMNGEKAIEEIHSEIILIFEQL 196
>gi|187933942|ref|YP_001885545.1| thymidylate kinase [Clostridium botulinum B str. Eklund 17B]
gi|187722095|gb|ACD23316.1| dTMP kinase [Clostridium botulinum B str. Eklund 17B]
Length = 208
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 103/226 (45%), Gaps = 60/226 (26%)
Query: 62 VFEGLDGCGKSHTSQTVAKKLKA----------SLKSTPPSSIMSLRE-KFDAHDSLLRR 110
VFEG+D GK+ T+ K+LK + + P + +L +D H + R
Sbjct: 15 VFEGIDNVGKT----TIIKELKGRICKEMGYECEIVAFPGNEERTLGGFVYDIHHNEKRY 70
Query: 111 AYYSLGN------YIAAQD--IKQDLQKQ-----PVVMDRFWHSTSAYGMANELVKNSDL 157
YS+ + ++A+ I++ L ++ ++MDRFW ST AYG++ L N
Sbjct: 71 IDYSINDASLQLLHVASHIDLIQRKLMEKYSSSKIIMMDRFWWSTYAYGLSGGLKSNV-- 128
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIY--LTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL 215
++ P+L+ + + V++ ++R R K++ +++ L
Sbjct: 129 ------------VSAILAPELICWEKINVNKIFLIERKDREKDYEADKD---------IL 167
Query: 216 LTTIYRNM--NNPELVFVDNSEKSVHESSNDIVELIHNLPMFKHSL 259
+ YR++ NP+ ++N + S+ E++N +I N M + SL
Sbjct: 168 IMQNYRDLARKNPKCQIINN-DGSLEETTN----MIFNEIMGESSL 208
>gi|452982252|gb|EME82011.1| hypothetical protein MYCFIDRAFT_77678 [Pseudocercospora fijiensis
CIRAD86]
Length = 227
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 44/189 (23%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP----PSSIMSLREKFDAHDS--------- 106
LIVFEGLD GKS +A+ L++ P S+ + +++ S
Sbjct: 17 LIVFEGLDRSGKSTQCARLAQHLQSRAHKVHAHRFPDRTTSIGQMINSYLSGSSSQEDHA 76
Query: 107 --LLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
LL +S + AA+ IK+ + VV+DR+++S Y A + N + L
Sbjct: 77 IHLL----FSANRWEAAERIKELINSGTTVVIDRYYYSGCVYSAAKQ---NPTMDL---- 125
Query: 164 DDIYSWPK----DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-NAKFRELLTT 218
+W + L +PDL ++L +S + ++R F E E ++ + REL
Sbjct: 126 ----AWCRHMEVGLPRPDLCLFLDISTEL----AAKRGGFGTERYEKQEMQDRVREL--- 174
Query: 219 IYRNMNNPE 227
+R M E
Sbjct: 175 -FREMQTHE 182
>gi|18312312|ref|NP_558979.1| thymidylate kinase [Pyrobaculum aerophilum str. IM2]
gi|23821790|sp|Q8ZY35.1|KTHY_PYRAE RecName: Full=Probable thymidylate kinase; AltName: Full=dTMP
kinase
gi|18159759|gb|AAL63161.1| thymidylate kinase (tmk) [Pyrobaculum aerophilum str. IM2]
Length = 192
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 35/211 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS--IMSLREKF-------DAHDSLLRR 110
+ EG+DG GKS + KKL + PSS I L +++ D H L
Sbjct: 3 FVAIEGIDGSGKSTVISLLEKKLPRVYATREPSSGPIGRLIKEWALKGGSVDPHVDALLF 62
Query: 111 AYYSLGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAY----GMANELVKNSDLKLPDEDDD 165
A + +Y ++I+ +++ +V+ +R+ S+ AY G++ E VK + +P
Sbjct: 63 AADRIEHY--KREIEPRVREGYIVISERYIESSIAYQGAAGVSREFVKYINSLVP----- 115
Query: 166 IYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNN 225
KPDL I L V +I R+ +R E + F + IY
Sbjct: 116 ---------KPDLTIILDVDPSIAEARIRQRGG-----AEKYEYLSFLRKVREIYLARAA 161
Query: 226 PELVFVDNSEKSVHESSNDIVELIHNLPMFK 256
E V ++ + E + D+ ELI + FK
Sbjct: 162 EEGYPVIDASRRPEEVAADVAELIKRVVRFK 192
>gi|163782656|ref|ZP_02177653.1| thymidylate kinase [Hydrogenivirga sp. 128-5-R1-1]
gi|159882229|gb|EDP75736.1| thymidylate kinase [Hydrogenivirga sp. 128-5-R1-1]
Length = 200
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 85/202 (42%), Gaps = 29/202 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTV-----AKKLKASLKSTPPSSIMS-------LREKFDAHDSL 107
LI FEG+DG GK+ S+ + K L SL P + + + ++ + L
Sbjct: 2 LITFEGIDGSGKTTQSKKLYEFLREKGLDVSLYREPGGTPLGEELRDILINKELNERTEL 61
Query: 108 LRRAYYSLGNYIAAQDIKQDLQKQPVV-MDRFWHSTSAY-GMANELVKNSDLKLPDEDDD 165
L + + + +K D+++ VV +DRF ST AY G L DL+ + ++
Sbjct: 62 L--LFEGARTQLVLERLKPDMERGMVVILDRFTDSTLAYQGYGRGL----DLEFVKKLNE 115
Query: 166 IYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNN 225
S+ +KPD+ L + + R+ + F + + K RE I R
Sbjct: 116 FASFG---IKPDITFLLDIEPETAVGRIREKSRF----DNVDFLKKVREGFLEIAR--KE 166
Query: 226 PELVFVDNSEKSVHESSNDIVE 247
E V V ++ + E DI E
Sbjct: 167 SERVVVLDTHRGEEEVFGDIKE 188
>gi|312142724|ref|YP_003994170.1| thymidylate kinase [Halanaerobium hydrogeniformans]
gi|311903375|gb|ADQ13816.1| thymidylate kinase [Halanaerobium hydrogeniformans]
Length = 208
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 85/205 (41%), Gaps = 25/205 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS---TPPSSIMSLREKFD------AHDSLLRR 110
I FEG++G GKS + + LK K T L +K AH+ + R
Sbjct: 6 FITFEGIEGSGKSTQIKLLGDYLKKEGKEVVITREPGGTELGKKIRQLLLDPAHEDMDYR 65
Query: 111 AYYSLGNYIAAQDIKQDLQ-----KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDD 165
L AQ K ++ + V+ DRF S AY A + D +L + +D
Sbjct: 66 TEILLYTADRAQHFKDVIKPALKAGKVVISDRFADSNLAYQAAG---RGLDYELVYKIND 122
Query: 166 IYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNA-KFRELLTTIYRNM- 223
W D PDL L V+ A L+R +R +F L + L++ A F + + Y M
Sbjct: 123 ---WVIDSRWPDLTFVLDVAIAEGLKR-ARASSFDLNGDRLEREADSFHQRVRKAYLEMV 178
Query: 224 NNPELVFVDN--SEKSVHESSNDIV 246
VD +E+ VH+ +I+
Sbjct: 179 KRDRFALVDGNLAEEEVHQEVKNII 203
>gi|54297309|ref|YP_123678.1| thymidylate kinase [Legionella pneumophila str. Paris]
gi|59798140|sp|Q5X5G6.1|KTHY_LEGPA RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|53751094|emb|CAH12505.1| hypothetical protein lpp1354 [Legionella pneumophila str. Paris]
Length = 212
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 91/220 (41%), Gaps = 42/220 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAY------- 112
LIV EGL+G GKS A L L S S ++ RE + R+
Sbjct: 8 LIVIEGLEGAGKS-----TAVNLVVELLSQKKISTITTREPGGTRIGEILRSIIKNPEYN 62
Query: 113 ------------YSLGNYIAAQDIKQDLQ-KQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
Y+ + Q IK L Q V+ DRF ST AY + ++++
Sbjct: 63 NVLDDRSELLLLYAARIQLIEQVIKPALNVGQWVIADRFELSTLAYQGGG---RKMNMRV 119
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTI 219
+E + ++ KPDL +YL ++ + + R R F E E + +F +
Sbjct: 120 INE---LSNFCLKGFKPDLTLYLDINPELGMIRAKSRGKFDRIEQE---SIEFFHRIHDT 173
Query: 220 YRNM--NNPELVFVDNSEKSVHESSNDIVELI-----HNL 252
Y + NPE++ +D + +S+ E + I +I HNL
Sbjct: 174 YHVLVKQNPEIMMID-ANRSLDEVQSSIQSVIEEFIEHNL 212
>gi|327301613|ref|XP_003235499.1| thymidylate kinase [Trichophyton rubrum CBS 118892]
gi|326462851|gb|EGD88304.1| thymidylate kinase [Trichophyton rubrum CBS 118892]
Length = 235
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 31/208 (14%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTV----------AKKLKASLKSTPPSSIMS--LREKFDA 103
R+ L+V EGLD GKS + K ++ ++T +++ LR +
Sbjct: 11 RRGALVVVEGLDRAGKSTQCARLHQFLVDQGHKTKYIRFPDRTTSIGKMINQYLRGEIQL 70
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
D + +S + AA I++D++ V++DR+ +S + Y A E N +L+L
Sbjct: 71 DDHAV-HLVFSANRWEAAAQIQRDIESGITVIVDRYSYSGAVYSAAKE---NKELQLD-- 124
Query: 163 DDDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKKNAKFRELLTTI 219
++W + L +PD+ +L VS + + R + E E + K +L ++
Sbjct: 125 ----WAWRPEVGLPRPDIWFFLNVSTEV----AAARGGYGTERYETVNLQKKVGKLFLSL 176
Query: 220 YRNMNNPELVFVDNSEKSVHESSNDIVE 247
N ++ VD + + V E S++I E
Sbjct: 177 TGLKGNEDMRIVD-AGREVDEISHEIRE 203
>gi|332298218|ref|YP_004440140.1| thymidylate kinase [Treponema brennaborense DSM 12168]
gi|332181321|gb|AEE17009.1| Thymidylate kinase [Treponema brennaborense DSM 12168]
Length = 208
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 29/213 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL--KASLKSTPPSSIMS---LREKFDAHDSLL--RRAY 112
IVFEG+DG G S + KL +L + P+S+ + LR + L AY
Sbjct: 6 FIVFEGIDGSGTSTQIALLKNKLPNPGTLFTAEPTSLATGRFLRTLLRGDERLTPGTMAY 65
Query: 113 YSLGN---YIAAQD--IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
+ ++ AQD ++ VV DR++ S+ AY A +LP + ++
Sbjct: 66 LFAADRYEHVHAQDGILQTCADGGIVVSDRYFFSSLAYQSA-----ECGRELPAKLNE-- 118
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE--LKKNAKFRELLTTIYRNM-- 223
S+P P+ + Y + ++ L R++ R + E L+K A E + Y
Sbjct: 119 SFP----LPEYLFYFDIEPSVSLNRITGRSVTEIYEKREFLEKTAAEYERIIGEYEKTAV 174
Query: 224 -NNPELVFVDNSEKSVHESSNDIVELIHNLPMF 255
++ +D SE SV E S +I ++ N+P+
Sbjct: 175 GTGMKITRLDASE-SVAEVSENIWSILRNMPIL 206
>gi|440756772|ref|ZP_20935972.1| thymidylate kinase [Microcystis aeruginosa TAIHU98]
gi|440172801|gb|ELP52285.1| thymidylate kinase [Microcystis aeruginosa TAIHU98]
Length = 207
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 35/185 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMS--LRE------------- 99
IVFEG+DG G S ++ + + KA L P ++ +RE
Sbjct: 5 FIVFEGIDGSGTSTQAKLLQEYFFKRGEKAVLSPEPSEGVIGRLIREIMQTNLISIQDQN 64
Query: 100 KFDAHDSLL---RRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSD 156
+FD + L R Y+ ++ + Q V+ R++ S+ AY N
Sbjct: 65 QFDRQMAYLFAADRHYHLYNDHDGVFKLIHQEQTH-VITTRYYFSSLAYNCNN------- 116
Query: 157 LKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL 216
P+E + + PD+VIY+ V I L R+ R + E + +K K R++
Sbjct: 117 ---PEELAFVRQLNQHFPNPDIVIYIDVIPDISLARIKNRAITEVYEKQ-EKLMKVRQMF 172
Query: 217 TTIYR 221
I++
Sbjct: 173 IEIFK 177
>gi|290978599|ref|XP_002672023.1| predicted protein [Naegleria gruberi]
gi|284085596|gb|EFC39279.1| predicted protein [Naegleria gruberi]
Length = 241
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 97/227 (42%), Gaps = 24/227 (10%)
Query: 36 LNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM 95
LN ++ + D V DD KY +IV G+ GCGKS T+ + L L
Sbjct: 22 LNQFTSSENVLNTDERVNDD-KYLVIVLFGVCGCGKS----TIGEALTQYLNECGGECCF 76
Query: 96 SLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPV-VMDRFWHS------TSAYGMA 148
+KF + ++ + A G + QD + L + +M+ HS S +
Sbjct: 77 LEGDKFHSKSNVEKMAK---GIPLNDQDRRPWLLAIHLQIMNEIKHSNRKIVVVSCSALK 133
Query: 149 N---ELVKNSDLKLPDEDDDIYSWP----KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL 201
N EL+ D +L + ++++ P +L L + L++S+ RL R +
Sbjct: 134 NIYRELLVLGDAQLCENEEELLDKPIQHNVNLDINWLFVNLSISQNEAQDRLENRSAHFM 193
Query: 202 EENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVEL 248
+ + ++F L TI + N +LV VDN EK V I++L
Sbjct: 194 NSSLIP--SQFETLELTINPTIKNAKLVVVDNQEKDVASVVQQIIQL 238
>gi|260767879|ref|ZP_05876813.1| thymidylate kinase [Vibrio furnissii CIP 102972]
gi|260615909|gb|EEX41094.1| thymidylate kinase [Vibrio furnissii CIP 102972]
Length = 209
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 18/198 (9%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSSIMSLREKFDA-----HDS-LLR 109
IV EGL+G GKS Q V + L A ++ P + L EK A H+ +L+
Sbjct: 6 IVVEGLEGAGKSTAIQAVVETLHAHGIQDITRTREPGGTV-LAEKMRALVKEEHEGEVLQ 64
Query: 110 RAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED-DDIYS 168
L Y A + +++ K P + R W + M+++ + ++ E +
Sbjct: 65 DMTELLLMYAARVQLVENVIK-PALQQRHWVVGDRHDMSSQAYQGGGRQIARETMQSLKQ 123
Query: 169 WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM-NNPE 227
KPD +YL + + L+R R E K + F E Y + E
Sbjct: 124 TTLGAFKPDFTLYLDIDPKVGLERARGRGELDRIE---KMDISFFERTRERYLELAAGDE 180
Query: 228 LVFVDNSEKSVHESSNDI 245
V N+E+S+ + ++DI
Sbjct: 181 SVVTINAEQSIEQVTHDI 198
>gi|261330431|emb|CBH13415.1| thymidylate kinase, putative [Trypanosoma brucei gambiense DAL972]
Length = 345
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 115/275 (41%), Gaps = 37/275 (13%)
Query: 7 LFAQYPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGV-----GDDRKYPLI 61
+FA Y V VLS+ + ++L + L I + N + V +D + +I
Sbjct: 72 VFAVYSKRVPVLSLTTGGETTNLLQTISSLGIECKQNTSETWADAVRAFLPNNDSEGAVI 131
Query: 62 VFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA-------------HD--- 105
VFEG DG GK+ ++ + K+L K+ S + ++ HD
Sbjct: 132 VFEGGDGAGKATQTEYMRKRLDKEGKAHASLDFPSDKHRYGKLIRKVLSGERGALHDLDP 191
Query: 106 ---SLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMAN-ELVKNSDLKLP 160
SLL +SL + +++ L + +++DR++ S + + E + SD
Sbjct: 192 KLFSLL----FSLNRFDTLPELRYWLTHGKKILLDRYYTSNFGHQASKLEESERSDFIRH 247
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEA---IRLQRLSRRKNFTLEENE-LKKNAKFRELL 216
E ++ W K L PD+ +YL + A + +QR +R++ + E L R+
Sbjct: 248 LEQLEL-EWLK-LPPPDVALYLDLPPAAALVAMQRDEKRESLDIHETAGLSYKENVRQTY 305
Query: 217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
+N N + N E + S + E+I+N
Sbjct: 306 VWCCQNQRNWVQIECCNDEGERY-SREKVHEMIYN 339
>gi|407463289|ref|YP_006774606.1| thymidylate kinase [Candidatus Nitrosopumilus koreensis AR1]
gi|407046911|gb|AFS81664.1| thymidylate kinase [Candidatus Nitrosopumilus koreensis AR1]
Length = 193
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 87/204 (42%), Gaps = 36/204 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAK-----KLKASLKSTPPSSI---MSLREKFDAHDSLLRRA 111
+IV EG D GK S + K K+K L P + +R+ D +
Sbjct: 2 IIVIEGGDQAGKLTQSTMLEKALKKRKIKTKLFHFPDYTTPVGKEIRKYLDGKRKFPPQV 61
Query: 112 YYSLGNYIAAQDIKQDLQKQP----VVMDRFWHSTSAYGMANEL----VKNSDLKLPDED 163
+ L + + Q L Q ++M+R++HS YG+AN + ++N D LP
Sbjct: 62 IHCLLAANRWEKLDQILDAQEKNSVLIMNRYYHSNLIYGLANGMKQKWLENLDAGLP--- 118
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM 223
K DLVI L V++ + +R+K ++ +KN +F ++ IY+N
Sbjct: 119 -----------KADLVILLDVTQK---ESFNRQKT---NRDKFEKNKEFLRKISKIYKNT 161
Query: 224 NNPELVFVDNSEKSVHESSNDIVE 247
+ + ++ K E +I++
Sbjct: 162 AKKKHWKIIDASKPKQEVHEEIMK 185
>gi|420164576|ref|ZP_14671303.1| dTMP kinase [Staphylococcus epidermidis NIHLM095]
gi|420169387|ref|ZP_14675987.1| dTMP kinase [Staphylococcus epidermidis NIHLM087]
gi|394231277|gb|EJD76910.1| dTMP kinase [Staphylococcus epidermidis NIHLM087]
gi|394231317|gb|EJD76949.1| dTMP kinase [Staphylococcus epidermidis NIHLM095]
Length = 203
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 92/208 (44%), Gaps = 31/208 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS---LKSTPPSSIMS---LREKFDAHDSLLRRAYY 113
I FEG +G GK+ + V+++L + + P +++ +R DS+ R
Sbjct: 4 FITFEGPEGAGKTSVIKEVSERLAKEYDIVTTREPGGVLTSEEIRRIVLDGDSIDIRTEA 63
Query: 114 SLGNYIAA------QDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLPDEDDDI 166
L + A+ + I LQ +V+ DR+ S+ AY + ++KL +E
Sbjct: 64 ML--FAASRREHLVEKIIPSLQAGKIVLCDRYIDSSLAYQGYARGIGIKEVKLLNE---- 117
Query: 167 YSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK-FRELLTTIYRNM-- 223
+ D + PDL IYL V I QR+ + E+N L K K F E + Y+ +
Sbjct: 118 --FAIDGLYPDLTIYLDVDAEIGRQRILKNNR---EQNRLDKEEKAFHEKVIEGYQKVIS 172
Query: 224 NNPELVFVDNS----EKSVHESSNDIVE 247
+NP N+ +K V E+ I++
Sbjct: 173 DNPHRFIKVNANHSLDKVVEETYQSIIK 200
>gi|384515106|ref|YP_005710198.1| thymidylate kinase [Corynebacterium ulcerans 809]
gi|334696307|gb|AEG81104.1| Thymidylate kinase [Corynebacterium ulcerans 809]
Length = 207
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 43/163 (26%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYS-LGN- 117
+I EG+DG GK+ + + +KL A + P R + H L ++A Y +G+
Sbjct: 2 IIAIEGIDGAGKNTLVRALVEKLDARVLGFP-------RYQDSIHAQLAQKALYQEMGDV 54
Query: 118 ----YIAA-------QDIKQDLQ-----KQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
Y A ++I ++LQ K +++DR+ S +AY A
Sbjct: 55 SDSIYAMALLFALDRREIAEELQTYKGSKDIILLDRYVASNAAYSAARA----------- 103
Query: 162 EDDDIYSWPKDLM-------KPDLVIYLTVSEAIRLQRLSRRK 197
+D ++ +W DL PD+ + L S + QR ++R+
Sbjct: 104 QDWNLVTWVSDLEFGEFGLPTPDIQVLLNTSPEVAAQRAAQRE 146
>gi|297172526|gb|ADI23497.1| deoxynucleoside kinases [uncultured gamma proteobacterium
HF0770_40P16]
Length = 229
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 33/213 (15%)
Query: 52 VGDDRKY----PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFD--AHD 105
V D +KY I EG G GK+ + +A PS+ L + + + +
Sbjct: 5 VLDLKKYNKVPKFIAVEGPIGVGKTTLANLLADSFGYETFLEKPSANPFLGDFYKKPSQN 64
Query: 106 SLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDD 165
+L + ++ Q++KQD PV + F A + + +L L ++
Sbjct: 65 ALATQLFFLFQRVKQIQELKQDDIFSPVKVSDFLVEKDKL-FAKATLSDQELTLYEQ--- 120
Query: 166 IYSWPK-DLMKPDLVIYLTVSEAIRLQRLSRR-----KNFTLEENELKKNAKFRELLTTI 219
IY++ DL+ PD+VIYL +R+ RR KN TL K+ ++L
Sbjct: 121 IYNYLSFDLITPDIVIYLQAKSKTLFERIMRRGIDIEKNITL---------KYLDILNES 171
Query: 220 YRNMNNPELVFVDNSEKS-VHESSNDIVELIHN 251
Y L F N EKS V ++D ++L++N
Sbjct: 172 Y-------LEFFQNYEKSPVLIVNSDFIDLVNN 197
>gi|320169555|gb|EFW46454.1| deoxythymidylate kinase [Capsaspora owczarzaki ATCC 30864]
Length = 210
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 79/190 (41%), Gaps = 39/190 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK----------STPPSSIMS--LREKFDAHDSL 107
LIVFEG D GKS + ++LKA K STP ++ L + D
Sbjct: 11 LIVFEGCDRSGKSTQCLMLVERLKALGKRVQHLRFPDRSTPTGQKINAYLANASEMQDDK 70
Query: 108 LRRAYYSLGNYIAAQDIKQDLQ-KQPVVMDRFWHS----TSAYGMANELVKNSDLKLPDE 162
+ + +S + A + + L+ +V+DR+ S +SA G+ E K D LP
Sbjct: 71 IHQ-LFSENRWEAVPSMLEALKNGTTLVVDRYAFSGVAFSSAKGLDLEWCKKPDAGLP-- 127
Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRN 222
PD VIYL I ++ +R +F NE + F+E + Y+
Sbjct: 128 ------------APDAVIYLD----IPIEAAMKRGDFG---NERYETRAFQEKVAAQYKK 168
Query: 223 MNNPELVFVD 232
+ P + +D
Sbjct: 169 LQTPSWMMMD 178
>gi|194880945|ref|XP_001974613.1| GG20995 [Drosophila erecta]
gi|190657800|gb|EDV55013.1| GG20995 [Drosophila erecta]
Length = 211
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 24/145 (16%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPP------SSIMS------LREKFDA 103
++ LI+FEG D GKS SQ + L + P SSI+ L D
Sbjct: 5 KRGALIIFEGCDRSGKSTQSQLLVALLNSKGIPALPMNFPERSSIIGQVINSYLTNSKDL 64
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
D ++ +S + IKQ+L + + VV+DR+ S AY A L +
Sbjct: 65 PDEVI-HLMFSTNRWEHMNYIKQNLHEGRTVVVDRYSFSGVAYSAAKGL----------D 113
Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEA 187
D Y+ + L+KPD V YL A
Sbjct: 114 FDWCYAPERGLIKPDAVFYLRAPPA 138
>gi|397653428|ref|YP_006494111.1| thymidylate kinase [Corynebacterium ulcerans 0102]
gi|393402384|dbj|BAM26876.1| thymidylate kinase [Corynebacterium ulcerans 0102]
Length = 207
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 43/163 (26%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYS-LGN- 117
+I EG+DG GK+ + + +KL A + P R + H L ++A Y +G+
Sbjct: 2 IIAIEGIDGAGKNTLVRALVEKLDARVLGFP-------RYQDSIHAQLAQKALYQEMGDV 54
Query: 118 ----YIAA-------QDIKQDLQ-----KQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
Y A ++I ++LQ K +++DR+ S +AY A
Sbjct: 55 SDSIYAMALLFALDRREIAEELQTYKGSKDIILLDRYVASNAAYSAARA----------- 103
Query: 162 EDDDIYSWPKDLM-------KPDLVIYLTVSEAIRLQRLSRRK 197
+D ++ +W DL PD+ + L S + QR ++R+
Sbjct: 104 QDWNLVTWVSDLEFGEFGLPTPDIQVLLNTSPEVAAQRAAQRE 146
>gi|254585257|ref|XP_002498196.1| ZYRO0G04554p [Zygosaccharomyces rouxii]
gi|238941090|emb|CAR29263.1| ZYRO0G04554p [Zygosaccharomyces rouxii]
Length = 218
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL-------KSTPPSSIMS---LREKFDAHDSLLR 109
LI+ EGLD GKS + + KLK + ++TP +++ E F D +
Sbjct: 6 LILVEGLDRTGKSTQASILLDKLKPNAELVKFPDRTTPIGQLINRYLTDESFQLPDQSI- 64
Query: 110 RAYYSLGNYIAAQDIKQD-LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168
+S + +Q ++ L + V+MDR+ +S AY +A + D + D
Sbjct: 65 HLLFSANRWELSQSLQNTLLSGKHVIMDRYVYSGIAYSLAKG-IDGMDFDWCIQPD---- 119
Query: 169 WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKKNAKFRELLTTIYRNMNN-- 225
K L+KPDL+ +L+ +++ + R+ F E E L K R+ + + N
Sbjct: 120 --KGLIKPDLLFFLSNRDSL---DTASREGFGQERYESLAFQEKVRDQFYRVLERLENYS 174
Query: 226 -----PELVFVDNSEKSVHESSNDIVELIH 250
L ++ + +S+ + S I E+++
Sbjct: 175 QGTDSNRLQMINVTNQSIDQVSITIWEIVN 204
>gi|337290186|ref|YP_004629207.1| thymidylate kinase [Corynebacterium ulcerans BR-AD22]
gi|334698492|gb|AEG83288.1| Thymidylate kinase [Corynebacterium ulcerans BR-AD22]
Length = 207
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 43/163 (26%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYS-LGN- 117
+I EG+DG GK+ + + +KL A + P R + H L ++A Y +G+
Sbjct: 2 IIAIEGIDGAGKNTLVRALVEKLDARVLGFP-------RYQDSIHAQLAQKALYQEMGDV 54
Query: 118 ----YIAA-------QDIKQDLQ-----KQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
Y A ++I ++LQ K +++DR+ S +AY A
Sbjct: 55 SDSIYAMALLFALDRREIAEELQAYKGSKDIILLDRYVASNAAYSAARA----------- 103
Query: 162 EDDDIYSWPKDLM-------KPDLVIYLTVSEAIRLQRLSRRK 197
+D ++ +W DL PD+ + L S + QR ++R+
Sbjct: 104 QDWNLVTWVSDLEFGEFGLPTPDIQVLLNTSPEVAAQRAAQRE 146
>gi|347534189|ref|YP_004840859.1| thymidylate kinase [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504245|gb|AEN98927.1| Thymidylate kinase [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 213
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 26/208 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKST------PPSSIMS-------LREKFDAHDS 106
LI FEG +G GK+ + KK+K L + P +I+S + K D+ D+
Sbjct: 5 LITFEGSEGAGKTTALNEIIKKIKPQLGNQLMTTREPGGNIISEEIRNIIMDSKNDSMDA 64
Query: 107 LLRRAYYSLG--NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD 164
++ ++ + I + V+ DR+ S+ AY A + +
Sbjct: 65 KTEALLFAAARRQHLIEEVIPALDAGKLVLCDRYVESSVAYQGAARGIGEQAIW------ 118
Query: 165 DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL-KKNAKFRELLTTIYRNM 223
D+ + + +KPDL IY V + L R+ + + T E N L K++ F + Y M
Sbjct: 119 DLNQFATNGLKPDLTIYFDVPIEVGLNRIMQHR--TNEINRLDKEHHDFYVKVHDAYEKM 176
Query: 224 --NNPELVFVDNSEKSVHESSNDIVELI 249
+P+ + ++ + + + D+++LI
Sbjct: 177 AKEHPDQIVKIDASQPIDQVVADVLKLI 204
>gi|328867446|gb|EGG15828.1| thymidylate kinase [Dictyostelium fasciculatum]
Length = 214
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 27/141 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL-----------KSTPPSSIMS--LREKFDAHDS 106
I+FEG D GKS Q + LK L ++TP SI++ L+ D
Sbjct: 13 FILFEGADRVGKSTQVQKLGDYLKNGLQLDAKVLRFPDRTTPTGSIINGYLQNTTQLDDR 72
Query: 107 LLRRAYYSLGNYIAAQDIKQDL--QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD 164
+ Y + N A+D L +V+DR+ +S AY A K D+ D
Sbjct: 73 AIHLLYAA--NRWEAKDNLMKLLNSGTSIVVDRYSYSGVAYTAA----KGIDV------D 120
Query: 165 DIYSWPKDLMKPDLVIYLTVS 185
++ K L +PDLVIYL ++
Sbjct: 121 WCFNCEKGLPEPDLVIYLKMT 141
>gi|212223342|ref|YP_002306578.1| thymidylate kinase [Thermococcus onnurineus NA1]
gi|229621846|sp|B6YSZ4.1|KTHY_THEON RecName: Full=Probable thymidylate kinase; AltName: Full=dTMP
kinase
gi|212008299|gb|ACJ15681.1| thymidylate kinase [Thermococcus onnurineus NA1]
Length = 205
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 93/222 (41%), Gaps = 53/222 (23%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGN-- 117
IV EG+DG GKS T A+ L K +++ A L+RR + G
Sbjct: 2 FIVIEGIDGAGKS----TQARLLAEWFKKKGYDVVLTKEPTDTAFGKLIRRLVLTGGKEG 57
Query: 118 -------------YIAAQD--------IKQDLQKQPVVM-DRFWHSTSAYGMANELVKNS 155
+ A D IK L+ +V+ DR+++S+ AY A L
Sbjct: 58 IIDGARISHEAEALLFAADRAEHVHKLIKPSLKTGKIVISDRYFYSSLAYQWARGL---- 113
Query: 156 DLKLPDEDDDIYSWPKDL----MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK 211
DL+ W DL ++PDLVI L + ++R++ R T E K A+
Sbjct: 114 DLE----------WLIDLNRFAVRPDLVILLDLPVKESMKRINGRSIKT----EFDKIAE 159
Query: 212 FRELLTTIYRNMNN--PELVFVDNSEKSVHESSNDIVELIHN 251
++ + Y + PE+ V N+ SV + NDIV L+ +
Sbjct: 160 LQKKVRENYLKLAERFPEMRIV-NALASVEDIHNDIVALVEH 200
>gi|154174807|ref|YP_001408262.1| thymidylate kinase [Campylobacter curvus 525.92]
gi|402547256|ref|ZP_10844127.1| dTMP kinase [Campylobacter sp. FOBRC14]
gi|254808283|sp|A7GYH0.1|KTHY_CAMC5 RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|112802787|gb|EAU00131.1| thymidylate kinase [Campylobacter curvus 525.92]
gi|401016551|gb|EJP75316.1| dTMP kinase [Campylobacter sp. FOBRC14]
Length = 194
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 26/189 (13%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSI---MSLREKFDAHD-SLLRRAYYSLG 116
++FEG+DG GKS + +A+ + SL + P LRE D L RA L
Sbjct: 3 VLFEGVDGVGKSTQIEMIARAHEDSLVTKEPGGTKIGQKLREILLGGDFKLSARAEILL- 61
Query: 117 NYIAAQDIKQDLQK-------QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY-- 167
++A D + QK + ++ DR + S AY +AN ++ LK+ DD ++
Sbjct: 62 -FLA--DRAEHYQKMIKPNSSRLILSDRGFVSGVAYALAN----DASLKI---DDLLWLN 111
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENELKKNAKFRELLTTIYRNMNNP 226
S+ + D +++ SE + +RLS R +E LK K +E + + + +
Sbjct: 112 SFALEGKFADKIVFFEASETLIKKRLSSRGLIDAIEARGLKYLLKVQECMKEVLK-AHKF 170
Query: 227 ELVFVDNSE 235
++++D SE
Sbjct: 171 NVLYIDASE 179
>gi|327267155|ref|XP_003218368.1| PREDICTED: thymidylate kinase-like [Anolis carolinensis]
Length = 212
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 34/210 (16%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTV-----AKKLKASLKSTPPSS------IMSLREKFDAH 104
R+ LIV EG+D GKS S+ + AK +A L P + I S EK +
Sbjct: 4 RRGALIVLEGVDRAGKSTQSRRLVEALGAKGHRAELLRFPERTTKIGQLISSYLEKKNNL 63
Query: 105 DSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
+ +S + IK+ L Q +V+DR+ S A+ A E K PD
Sbjct: 64 EDHTVHLLFSANRWEQVPLIKEKLNQGITLVVDRYAFSGVAFTGAKENFSLEWCKQPD-- 121
Query: 164 DDIYSWPKDLMKPDLVIYLTV--SEAIRLQRLSRRKNFTLEENELKKNAKFRE-LLTTIY 220
L KPD++++L + SEA ++R +F E E N+ F+E +L Y
Sbjct: 122 -------VGLPKPDVILFLQLNTSEA------AKRGDFGSERYE---NSSFQEKVLQCYY 165
Query: 221 RNMNNPELVF-VDNSEKSVHESSNDIVELI 249
M + L + V ++ K++ + N+I ++
Sbjct: 166 DLMEDKTLNWKVIDASKTIEDLHNEIKSIV 195
>gi|195150817|ref|XP_002016347.1| GL10538 [Drosophila persimilis]
gi|194110194|gb|EDW32237.1| GL10538 [Drosophila persimilis]
Length = 211
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 30/146 (20%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL 115
++ L VFEG D CGK+ S+ +A+ LK+ K P S M+ E+ + ++ +Y +
Sbjct: 5 KRGALFVFEGCDRCGKTTQSRLLAEFLKS--KGIPTLS-MNFPERESSTGQVI-NSYLTN 60
Query: 116 GNYIAAQDI----------------KQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
N + + I K+ L +++DR+ +S AY A L
Sbjct: 61 SNDLPDEVIHLMFSANRWEYMNKIRKELLAGTTLIVDRYSYSGVAYTAAKGL-------- 112
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVS 185
+ D Y+ + L+KPD V YL +
Sbjct: 113 --DFDWCYAPERGLIKPDAVFYLKTA 136
>gi|449932119|ref|ZP_21802682.1| thymidylate kinase [Streptococcus mutans 3SN1]
gi|449161732|gb|EMB64906.1| thymidylate kinase [Streptococcus mutans 3SN1]
Length = 212
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 40/218 (18%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA------HDSLLRR 110
K I FEG DG GK+ TV + + LK +++ RE D +L
Sbjct: 3 KGIFISFEGPDGAGKT----TVLEAILPQLKKLVAKEVITTREPGGVAIAESIRDLILDV 58
Query: 111 AYYSLGN------YIAA------QDIKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSD 156
+ ++ + YIAA + I +L+K +V+ DRF S+ AY G L
Sbjct: 59 NHTNMDDKTELLLYIAARRQHLVERILPELKKGNLVLVDRFIDSSVAYQGYGRGL----- 113
Query: 157 LKLPDEDDDIYSW----PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKF 212
D D +W D ++PDL +Y V I L R+ + K + +L++
Sbjct: 114 ------DADAVTWLNNFATDGLQPDLTLYFDVDSQIGLTRIEKNKEREVNRLDLEQLDMH 167
Query: 213 RELLTTIYR-NMNNPELVFVDNSEKSVHESSNDIVELI 249
R + + + NP+ + ++ + + E D + +I
Sbjct: 168 RRVRSGYLKLAQENPDRIITIDAARPLEEVITDALFII 205
>gi|1074411|pir||A64153 dTMP kinase (EC 2.7.4.9) - Haemophilus influenzae (strain Rd KW20)
Length = 237
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 98/236 (41%), Gaps = 35/236 (14%)
Query: 37 NIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA----------SL 86
NIY I + ++ K IV EGL+G GKS Q+V + L
Sbjct: 9 NIYVGIAVRKMPNKSAEENMKGKFIVIEGLEGAGKSSAHQSVVRVLHELGIQDVVFTREP 68
Query: 87 KSTPPSSIMSLREKFDAHDSLLRRA----YYSLGNYIAAQDIKQDL-QKQPVVMDRFWHS 141
TP + + K + + + +A Y+ + IK L Q + VV DR S
Sbjct: 69 GGTPLAEKLRHLIKHETEEPVTDKAELLMLYAARIQLVENVIKPALMQGKWVVGDRHDMS 128
Query: 142 TSAY-GMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF- 199
+ AY G +L + L L + + +PDL IYL + ++ L R R
Sbjct: 129 SQAYQGGGRQLDPHFMLTLKETVLGNF-------EPDLTIYLDIDPSVGLARARGRGELD 181
Query: 200 TLEENEL----KKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
+E+ +L + A++ EL+ +NP+ V + N+E+S+ DI + N
Sbjct: 182 RIEQMDLDFFHRTRARYLELVK------DNPKAVVI-NAEQSIELVQADIESAVKN 230
>gi|345016544|ref|YP_004818897.1| thymidylate kinase [Thermoanaerobacter wiegelii Rt8.B1]
gi|392940117|ref|ZP_10305761.1| thymidylate kinase [Thermoanaerobacter siderophilus SR4]
gi|344031887|gb|AEM77613.1| Thymidylate kinase [Thermoanaerobacter wiegelii Rt8.B1]
gi|392291867|gb|EIW00311.1| thymidylate kinase [Thermoanaerobacter siderophilus SR4]
Length = 203
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 90/208 (43%), Gaps = 32/208 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFD------AHDSLLRR--- 110
I FEG+DGCGK+ + + + L LK +I+ LRE D LL +
Sbjct: 5 FISFEGIDGCGKTTQIKFLEEYL---LKQG--YNILVLREPGGTKVGEKVRDILLDKNNF 59
Query: 111 --------AYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
Y S + + I L+K Q V++DRF S+ Y + +KL +
Sbjct: 60 ISPVTEMLLYASSRAQLVEEKILPALEKGQIVILDRFVDSSYVYQGYARGLGIEKVKLVN 119
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYR 221
E + + PD+ IY+ ++ ++R +R+ LE+ + + K RE + +
Sbjct: 120 EIATMG------ILPDVTIYIDITPEEAMKRRGKREADRLEKESWEFHKKVREGYIKLVK 173
Query: 222 NMNNPELVFVDNSEK--SVHESSNDIVE 247
VF+D ++ VH+ D+V+
Sbjct: 174 EFPK-RFVFIDGMQELMKVHQDIIDVVK 200
>gi|390960587|ref|YP_006424421.1| thymidylate kinase [Thermococcus sp. CL1]
gi|390518895|gb|AFL94627.1| thymidylate kinase [Thermococcus sp. CL1]
Length = 205
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 96/226 (42%), Gaps = 54/226 (23%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGN-- 117
IV EG+DG GKS T AK L + +++ A L+R+ + G
Sbjct: 2 FIVIEGIDGAGKS----TQAKLLAEWFEKKGHEVVLTKEPTDTAFGKLIRKLVLTGGKEG 57
Query: 118 ---------------YIA------AQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNS 155
+ A A+ IK L+ +V+ DR+++S+ AY A L
Sbjct: 58 IIDGARISHEAEALLFAADRAEHVAKLIKPSLEAGKIVISDRYFYSSLAYQWARGL---- 113
Query: 156 DLKLPDEDDDIYSWPKDL----MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK 211
DL+ W DL ++PDLVI L + ++R++ R T E K A+
Sbjct: 114 DLE----------WLIDLNRFAIRPDLVILLDLPVKESMKRINGRSIKT----EFDKIAE 159
Query: 212 FRELLTTIYRNMNN--PELVFVDNSEKSVHESSNDIVELI-HNLPM 254
++ + Y + PE+ V N+ SV + NDIV L+ H L +
Sbjct: 160 LQKRVRENYLKLAERFPEIKIV-NALASVEDIHNDIVALVEHELSL 204
>gi|115315297|ref|YP_764020.1| thymidylate kinase [Francisella tularensis subsp. holarctica OSU18]
gi|122324708|sp|Q0BKK1.1|KTHY_FRATO RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|115130196|gb|ABI83383.1| dTMP kinase [Francisella tularensis subsp. holarctica OSU18]
Length = 209
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 27/154 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSI--------MSLREKFDAH--- 104
IV EGLDG GKS V K L+ A++ + P + L K+D
Sbjct: 5 FIVIEGLDGAGKSTAISFVRKYLEKNNLAAIYTREPGGTKIAEELRNLVLHNKYDEEIHS 64
Query: 105 DSLLRRAYYSLGNY---IAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
DS L Y + + A +++ + VV DRF+ S+ AY V+ S ++ +
Sbjct: 65 DSELLMIYAGRVQHYRNLIAPALEKGIN---VVSDRFYWSSMAYQGGGRGVELSKIRALN 121
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSR 195
+ + +PDLVIYL + + LQR +
Sbjct: 122 NN------FLNGCEPDLVIYLDIDPILGLQRAQK 149
>gi|125808374|ref|XP_001360729.1| GA19108 [Drosophila pseudoobscura pseudoobscura]
gi|54635901|gb|EAL25304.1| GA19108 [Drosophila pseudoobscura pseudoobscura]
Length = 211
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 30/146 (20%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL 115
++ L VFEG D CGK+ S+ +A+ LK+ K P S M+ E+ + ++ +Y +
Sbjct: 5 KRGALFVFEGCDRCGKTTQSRLLAEFLKS--KGIPTLS-MNFPERESSTGQVI-NSYLTN 60
Query: 116 GNYIAAQDI----------------KQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
N + + I K+ L +++DR+ +S AY A L
Sbjct: 61 SNDLPDEVIHLMFSANRWEYMNKIRKELLAGTTLIVDRYSYSGVAYTAAKGL-------- 112
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVS 185
+ D Y+ + L+KPD V YL +
Sbjct: 113 --DFDWCYAPERGLIKPDAVFYLKTA 136
>gi|225848089|ref|YP_002728252.1| thymidylate kinase [Sulfurihydrogenibium azorense Az-Fu1]
gi|225643400|gb|ACN98450.1| thymidylate kinase [Sulfurihydrogenibium azorense Az-Fu1]
Length = 204
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 23/204 (11%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMS--LREKFDAH-----DSL 107
I FEG++G GKS ++ + + L KA L P + + +RE +H S+
Sbjct: 4 FITFEGIEGSGKSTQAKRLYEYLTNIGIKAYLTREPGGTSIGKKIREILLSHWEENFPSI 63
Query: 108 LRRAYYSLGNYIAAQDIKQDLQKQP--VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDD 165
Y I +I + L +Q V+ DRF+ ST+AY + D + D +
Sbjct: 64 AELLLYQADRNIHVNNIIKPLLQQDYIVISDRFYDSTTAY---QHYARGIDYSIVDYLNK 120
Query: 166 IYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNN 225
+ + + +KP + L + +RL+R K+ LE L + K RE I +M
Sbjct: 121 LAT---EGIKPHITFLLDLPVQEAFKRLNREKD-RLESEGLNFHQKVREGFLKI-ADMEK 175
Query: 226 PELVFVDNSEKSVHESSNDIVELI 249
++ +D KS E N I+ ++
Sbjct: 176 DRVIVLDGL-KSPDEIFNQILNIL 198
>gi|72392843|ref|XP_847222.1| thymidylate kinase [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62358480|gb|AAX78942.1| thymidylate kinase, putative [Trypanosoma brucei]
gi|70803252|gb|AAZ13156.1| thymidylate kinase, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 345
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 115/275 (41%), Gaps = 37/275 (13%)
Query: 7 LFAQYPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGV-----GDDRKYPLI 61
+FA Y V VLS+ + ++L E L I + N + V ++ + +I
Sbjct: 72 VFAVYSKRVPVLSLTTGGETTNLLETISSLGIECKQNTSETWADAVRAFLPNNNSESAVI 131
Query: 62 VFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA-------------HD--- 105
VFEG DG GK+ ++ + K+L K+ S + ++ HD
Sbjct: 132 VFEGGDGAGKATQTEYMRKRLDKEGKAHASLDFPSDKHRYGKLIRKVLSGERGALHDLDP 191
Query: 106 ---SLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMAN-ELVKNSDLKLP 160
SLL +SL + +++ L + +++DR++ S + + E + SD
Sbjct: 192 KLFSLL----FSLNRFDTLPELRYWLTHGKKILLDRYYTSNFGHQASKLEESERSDFIRH 247
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEA---IRLQRLSRRKNFTLEENE-LKKNAKFRELL 216
E ++ W K L PD+ +YL + A + +QR +R++ + E L R+
Sbjct: 248 LEQLEL-EWLK-LPPPDVALYLDLPPAAALVAMQRDEKRESLDIHETAGLSYKENVRQTY 305
Query: 217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
+N N + N E + S + E+I+N
Sbjct: 306 VWCCQNQRNWVQIECCNDEGERY-SREKVHEMIYN 339
>gi|15604527|ref|NP_221045.1| thymidylate kinase [Rickettsia prowazekii str. Madrid E]
gi|383486672|ref|YP_005404352.1| thymidylate kinase [Rickettsia prowazekii str. GvV257]
gi|383488081|ref|YP_005405760.1| thymidylate kinase [Rickettsia prowazekii str. Chernikova]
gi|383488926|ref|YP_005406604.1| thymidylate kinase [Rickettsia prowazekii str. Katsinyian]
gi|383489766|ref|YP_005407443.1| thymidylate kinase [Rickettsia prowazekii str. Dachau]
gi|383499906|ref|YP_005413267.1| thymidylate kinase [Rickettsia prowazekii str. BuV67-CWPP]
gi|383500743|ref|YP_005414103.1| thymidylate kinase [Rickettsia prowazekii str. RpGvF24]
gi|386082550|ref|YP_005999128.1| thymidylate kinase [Rickettsia prowazekii str. Rp22]
gi|6225595|sp|Q9ZCN9.1|KTHY_RICPR RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|3861221|emb|CAA15121.1| THYMIDYLATE KINASE (tmk) [Rickettsia prowazekii str. Madrid E]
gi|292572315|gb|ADE30230.1| Thymidylate kinase [Rickettsia prowazekii str. Rp22]
gi|380757037|gb|AFE52274.1| thymidylate kinase [Rickettsia prowazekii str. GvV257]
gi|380758440|gb|AFE53676.1| thymidylate kinase [Rickettsia prowazekii str. RpGvF24]
gi|380760960|gb|AFE49482.1| thymidylate kinase [Rickettsia prowazekii str. Chernikova]
gi|380761805|gb|AFE50326.1| thymidylate kinase [Rickettsia prowazekii str. Katsinyian]
gi|380762652|gb|AFE51172.1| thymidylate kinase [Rickettsia prowazekii str. BuV67-CWPP]
gi|380763489|gb|AFE52008.1| thymidylate kinase [Rickettsia prowazekii str. Dachau]
Length = 203
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 41/212 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS-----------LREKFDAHDSL- 107
I FEG+DG GKS T +K L LKS I++ +RE + L
Sbjct: 9 FITFEGVDGIGKS----TQSKMLYEYLKSQKIPVILTREVGGTTVAEKMREILVNEELLP 64
Query: 108 ---LRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD 164
L +A + +++A + I V+ DRF ST+ Y L+L + D
Sbjct: 65 MSELLQAMAARYDHMARKIIPALKDGYIVICDRFIDSTACY---------QGLELENGID 115
Query: 165 DIYSWPKDLM---KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELK-KNAKFRELLTTIY 220
+YS K LM PD+ ++ V ++R++ R N+ ++ F + + T +
Sbjct: 116 LVYSLHKTLMPSLMPDITFFIDVEPHTAIKRVNARNM----SNKFDIRSIDFYKKIYTCF 171
Query: 221 RNMNN--PELVFVDNSEKSVHESSNDIVELIH 250
+ ++N PE + + K+ H S ++ ELI
Sbjct: 172 KELSNRFPERI---KTIKASHLSPLEVHELIQ 200
>gi|365905393|ref|ZP_09443152.1| thymidylate kinase [Lactobacillus versmoldensis KCTC 3814]
Length = 216
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 26/208 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS------LKSTPPSSIMSLREK---FDAHDSLLRR 110
I FEG DG GK+ Q + +LKA+ + P S ++ + + D +D +
Sbjct: 5 FISFEGPDGAGKTTALQNLLPQLKAATDQEIVVSREPGGSPIAEKIRNIILDVNDESMDA 64
Query: 111 AYYSLGNYIAAQD------IKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLPDED 163
+L Y AA+ I LQ V++ DRF S+ AY + ++
Sbjct: 65 GTEAL-LYAAARRQHLVDVILPTLQANKVMLSDRFVDSSIAYQGGGRQLGTKEVA----- 118
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM 223
I + D PDL IY VS + L R+ + ++ E +++ KF + + Y +
Sbjct: 119 -SINDFAIDGHLPDLTIYFDVSPEVGLSRIKKDHADQMDRLE-QESIKFHQRVHDSYLKL 176
Query: 224 --NNPELVFVDNSEKSVHESSNDIVELI 249
NP+ + ++E++ + +D + I
Sbjct: 177 VKENPQRIVTIDAEQAPKQVVDDALAAI 204
>gi|383319327|ref|YP_005380168.1| thymidylate kinase [Methanocella conradii HZ254]
gi|379320697|gb|AFC99649.1| thymidylate kinase [Methanocella conradii HZ254]
Length = 201
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 25/203 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVA----KKLKASLKSTPPSSIMSLREKFD-AHDSLLRRAYYS 114
LI EG+DG GK+ + + K+ K ++ P+ RE A L+
Sbjct: 7 LISVEGIDGTGKTTQVRLLKEWLDKRGKDAVALKEPTQGRYGREIARLASSGGLKDPRKE 66
Query: 115 LGNYI--AAQDIKQDL-----QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
L ++ +D+K+++ + V+MDR++ S AY A L +K+ +E++
Sbjct: 67 LELFMLDRMEDVKENILPALEAGKVVIMDRYYLSNIAYQGARGL---DPMKIKEENEKFS 123
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPE 227
P DL+I L + + + R++ RK + A R + R +P
Sbjct: 124 PVP------DLIIILDIDPRLSMARVNARKGVV---GHFENEAYLRRVREIFLRIGESPN 174
Query: 228 LVFVDNSEKSVHESSNDIVELIH 250
V +D S V E IVE I
Sbjct: 175 AVVIDAS-GPVEEVHRKIVEAIE 196
>gi|398343136|ref|ZP_10527839.1| thymidylate kinase [Leptospira inadai serovar Lyme str. 10]
Length = 228
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 26/154 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYSLGN 117
VFEGLDG GKS S+ + +L + + P+ + +++ L + R L
Sbjct: 32 FFVFEGLDGSGKSTLSRYLFDRLS---QQSVPAICFAEPTQYETGQYLRKFLRGEIELSG 88
Query: 118 YIAAQ----DIKQDLQK---------QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD 164
Q D K L+K + V++DR+ +ST+AY LK E
Sbjct: 89 EEQIQAFLKDRKVSLEKNVLPALAEGKIVLLDRYMYSTAAYQSGPAFSSQEILKRNLEQ- 147
Query: 165 DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN 198
+P +PDL+ YL + + L+R+ R+N
Sbjct: 148 ---GFP----QPDLLFYLDLDPELALERMEGREN 174
>gi|269986146|gb|EEZ92459.1| dTMP kinase [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 200
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVA-----KKLKASLKSTPPSSIM------SLREKFDAHD 105
K IV EG+D GK S +A K K L P + I+ +L ++ + +
Sbjct: 2 KGKFIVIEGIDNAGKGTQSVLLAEHIRSKGFKVILTKEPTNGILGGISKAALNKELNLSN 61
Query: 106 SLLRRAYYSLGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLPDEDD 164
L+ + + + +I+ ++ +V+ DR++ ST AYG A+ +
Sbjct: 62 KALQLLFCADRAHHLETEIEPAMRDGFIVICDRYFFSTLAYGFASNIN------------ 109
Query: 165 DIYSWPKDL----MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY 220
Y W + + KPDL IYL + L R ++ + + L+K +K R+ +I
Sbjct: 110 --YKWLRSVNVSFRKPDLGIYLDLDPKTSLSRAKKQVDGLQLFDNLEKISKVRQAYLSIA 167
Query: 221 RNMN 224
+ +
Sbjct: 168 KEFH 171
>gi|239989572|ref|ZP_04710236.1| hypothetical protein SrosN1_19886 [Streptomyces roseosporus NRRL
11379]
gi|291446591|ref|ZP_06585981.1| predicted protein [Streptomyces roseosporus NRRL 15998]
gi|291349538|gb|EFE76442.1| predicted protein [Streptomyces roseosporus NRRL 15998]
Length = 213
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 63 FEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSL-LRRAYYSLGNYIAA 121
EGL G GKS + +A +A L +T P LR+ D ++ R +Y G + AA
Sbjct: 10 LEGLRGTGKSTLAPMLAAARQAVLVATVPLPYQPLRQALDERTNVEARMCFYLSGLFTAA 69
Query: 122 QDIKQDLQKQ-PVVMDRFW 139
++I+ L PVV++ ++
Sbjct: 70 EEIQHHLDAGVPVVVESYF 88
>gi|241889738|ref|ZP_04777036.1| thymidylate kinase [Gemella haemolysans ATCC 10379]
gi|241863360|gb|EER67744.1| thymidylate kinase [Gemella haemolysans ATCC 10379]
Length = 202
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 33/210 (15%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLK-----STPPSSIMSLREKFDAHDSLLRR 110
+K LIVFEGLDG GK+ + + K + K P + + D + +
Sbjct: 2 KKGLLIVFEGLDGSGKTTQINLLEEWFKRNKKLVHSTRQPTDFYRNDKRVKDYLEDGIVP 61
Query: 111 AYYSLGNYIAAQ-------DIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
YS+ AA +IK L K ++ DR+ +S+ A+ A + +
Sbjct: 62 NMYSIALLAAADRTYQNEVEIKPTLSKGINIISDRYLYSSLAFFKARGI----------K 111
Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRN 222
+I + KD+ +PD++I+L + L+R+ R KN +F E +
Sbjct: 112 YQEIRNINKDIEEPDIIIFLDIDPDKALERVRVRDG---------KNLRFEEKNDNTFIQ 162
Query: 223 MNNPELVFVDNSEKSVHESSNDIVELIHNL 252
+ N L + + + +S+ D V+LIH L
Sbjct: 163 VRNNFLEVLPKGKTLIVDSTKD-VKLIHEL 191
>gi|296118803|ref|ZP_06837379.1| dTMP kinase [Corynebacterium ammoniagenes DSM 20306]
gi|295968292|gb|EFG81541.1| dTMP kinase [Corynebacterium ammoniagenes DSM 20306]
Length = 204
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 43/181 (23%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYS-LGNY 118
+I EG+DG GK+ T+ +L+ L + P + R + H L + A Y +G+
Sbjct: 2 IIAIEGIDGAGKN----TLVSQLRKEL-NIPVEVLAFPRYEDSIHAQLAQEALYGRMGDL 56
Query: 119 IAA------------QDIKQDLQKQP-----VVMDRFWHSTSAYGMANELVKNSDLKLPD 161
++ KQ L++ +++DR+ S +AY A +L D
Sbjct: 57 TSSAYAMATLFALDRHGAKQQLEEASTSSNLLILDRYVASNAAYSAA---------RLGD 107
Query: 162 EDDDIYSWPKDLM-------KPDLVIYLTVSEAIRLQRLSRR--KNFTLEENELKKNAKF 212
D + W DL KPDL IYL I QR S R ++ + E+++ +K+
Sbjct: 108 --DAVMDWVFDLEFGRLGLPKPDLQIYLATEVGIAAQRASSREAQDASREKDQYEKDGGL 165
Query: 213 R 213
+
Sbjct: 166 Q 166
>gi|392330762|ref|ZP_10275377.1| thymidylate kinase [Streptococcus canis FSL Z3-227]
gi|391418441|gb|EIQ81253.1| thymidylate kinase [Streptococcus canis FSL Z3-227]
Length = 211
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 35/171 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK-----STPPSSIM---SLRE-----KFDAHDS 106
LI EG DG GK+ + V LK + + P + +RE K A D
Sbjct: 6 LITVEGPDGAGKTSVLEQVVPLLKERISQEIVTTREPGGVAISEHIRELILDVKHTAMDP 65
Query: 107 LLRRAYYSLGNYIAAQDIKQDL---------QKQPVVMDRFWHSTSAYGMANELVKNSDL 157
L YIAA+ +Q L Q V +DRF S+ AY A + +D+
Sbjct: 66 -----KTELLLYIAAR--RQHLVEKVLPALEAGQLVFIDRFTDSSVAYQGAGRGLSKADI 118
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK 208
+ + + D ++PDL +Y V I L R++ KN + +L+K
Sbjct: 119 QW------LNRFATDGLEPDLTLYFDVPSEIGLARIAANKNREVNRLDLEK 163
>gi|218437720|ref|YP_002376049.1| dTMP kinase [Cyanothece sp. PCC 7424]
gi|218170448|gb|ACK69181.1| dTMP kinase [Cyanothece sp. PCC 7424]
Length = 207
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 44/190 (23%)
Query: 60 LIVFEGLDGCGKSHTSQT-----VAKKLKASLKSTPPSSIMS--LRE------------- 99
IV EG+DG G S + + K KA + P S ++ +RE
Sbjct: 5 FIVLEGIDGSGTSTQASLLQDYFINKGEKAVISPEPTSGVIGKLIREAMQKPIICLEDQQ 64
Query: 100 KFDAHDSLLRRA--YYSLGNYIAAQDIKQDLQKQP--VVMDRFWHSTSAYGMANELVKNS 155
KFD + L A +Y L N + + + ++K V+ R++ S+ AY
Sbjct: 65 KFDQQMAYLFAADRHYHLYN--DSDGVFKLIEKDQCHVITTRYYFSSLAY---------- 112
Query: 156 DLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL 215
+ P+E + + PDLVIY+ + + L+RL R + EN RE
Sbjct: 113 NCHTPEEFKFVSQLNERFPNPDLVIYIDLPVEVSLERLQERTIKDVYEN--------REK 164
Query: 216 LTTIYRNMNN 225
LT + N +N
Sbjct: 165 LTQVRNNYHN 174
>gi|24380041|ref|NP_721996.1| thymidylate kinase [Streptococcus mutans UA159]
gi|290579980|ref|YP_003484372.1| thymidylate kinase [Streptococcus mutans NN2025]
gi|387785651|ref|YP_006250747.1| thymidylate kinase [Streptococcus mutans LJ23]
gi|449865164|ref|ZP_21778825.1| thymidylate kinase [Streptococcus mutans U2B]
gi|449872304|ref|ZP_21781443.1| thymidylate kinase [Streptococcus mutans 8ID3]
gi|449881925|ref|ZP_21784690.1| thymidylate kinase [Streptococcus mutans SA38]
gi|449886272|ref|ZP_21786096.1| thymidylate kinase [Streptococcus mutans SA41]
gi|449902348|ref|ZP_21791535.1| thymidylate kinase [Streptococcus mutans M230]
gi|449910101|ref|ZP_21794538.1| thymidylate kinase [Streptococcus mutans OMZ175]
gi|449924035|ref|ZP_21799375.1| thymidylate kinase [Streptococcus mutans 4SM1]
gi|449947432|ref|ZP_21807377.1| thymidylate kinase [Streptococcus mutans 11SSST2]
gi|449969044|ref|ZP_21812983.1| thymidylate kinase [Streptococcus mutans 2VS1]
gi|449984197|ref|ZP_21818883.1| thymidylate kinase [Streptococcus mutans NFSM2]
gi|450031286|ref|ZP_21833619.1| thymidylate kinase [Streptococcus mutans G123]
gi|450035294|ref|ZP_21834935.1| thymidylate kinase [Streptococcus mutans M21]
gi|450056210|ref|ZP_21841917.1| thymidylate kinase [Streptococcus mutans NLML4]
gi|450062713|ref|ZP_21844490.1| thymidylate kinase [Streptococcus mutans NLML5]
gi|450066027|ref|ZP_21845751.1| thymidylate kinase [Streptococcus mutans NLML9]
gi|450081446|ref|ZP_21851729.1| thymidylate kinase [Streptococcus mutans N66]
gi|450087666|ref|ZP_21854409.1| thymidylate kinase [Streptococcus mutans NV1996]
gi|450094124|ref|ZP_21856898.1| thymidylate kinase [Streptococcus mutans W6]
gi|450112060|ref|ZP_21863035.1| thymidylate kinase [Streptococcus mutans SM6]
gi|450127475|ref|ZP_21868604.1| thymidylate kinase [Streptococcus mutans U2A]
gi|450134118|ref|ZP_21870953.1| thymidylate kinase [Streptococcus mutans NLML8]
gi|450148322|ref|ZP_21875560.1| thymidylate kinase [Streptococcus mutans 14D]
gi|450166050|ref|ZP_21882144.1| thymidylate kinase [Streptococcus mutans B]
gi|450175823|ref|ZP_21885422.1| thymidylate kinase [Streptococcus mutans SM1]
gi|46576564|sp|Q8DSU6.1|KTHY_STRMU RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|24378032|gb|AAN59302.1|AE014996_5 putative thymidylate kinase [Streptococcus mutans UA159]
gi|254996879|dbj|BAH87480.1| putative thymidylate kinase [Streptococcus mutans NN2025]
gi|379132052|dbj|BAL68804.1| thymidylate kinase [Streptococcus mutans LJ23]
gi|449149914|gb|EMB53695.1| thymidylate kinase [Streptococcus mutans NLML8]
gi|449154557|gb|EMB58130.1| thymidylate kinase [Streptococcus mutans 8ID3]
gi|449163332|gb|EMB66440.1| thymidylate kinase [Streptococcus mutans 4SM1]
gi|449168617|gb|EMB71425.1| thymidylate kinase [Streptococcus mutans 11SSST2]
gi|449174483|gb|EMB76969.1| thymidylate kinase [Streptococcus mutans 2VS1]
gi|449180448|gb|EMB82605.1| thymidylate kinase [Streptococcus mutans NFSM2]
gi|449191794|gb|EMB93254.1| thymidylate kinase [Streptococcus mutans G123]
gi|449195659|gb|EMB96972.1| thymidylate kinase [Streptococcus mutans M21]
gi|449205445|gb|EMC06192.1| thymidylate kinase [Streptococcus mutans NLML5]
gi|449206988|gb|EMC07672.1| thymidylate kinase [Streptococcus mutans NLML4]
gi|449209346|gb|EMC09875.1| thymidylate kinase [Streptococcus mutans NLML9]
gi|449215251|gb|EMC15458.1| thymidylate kinase [Streptococcus mutans N66]
gi|449216606|gb|EMC16708.1| thymidylate kinase [Streptococcus mutans W6]
gi|449217574|gb|EMC17616.1| thymidylate kinase [Streptococcus mutans NV1996]
gi|449222814|gb|EMC22529.1| thymidylate kinase [Streptococcus mutans SM6]
gi|449230676|gb|EMC29925.1| thymidylate kinase [Streptococcus mutans U2A]
gi|449236002|gb|EMC34938.1| thymidylate kinase [Streptococcus mutans 14D]
gi|449240054|gb|EMC38749.1| thymidylate kinase [Streptococcus mutans B]
gi|449246201|gb|EMC44513.1| thymidylate kinase [Streptococcus mutans SM1]
gi|449250734|gb|EMC48783.1| thymidylate kinase [Streptococcus mutans SA38]
gi|449254451|gb|EMC52359.1| thymidylate kinase [Streptococcus mutans SA41]
gi|449260248|gb|EMC57752.1| thymidylate kinase [Streptococcus mutans OMZ175]
gi|449262874|gb|EMC60313.1| thymidylate kinase [Streptococcus mutans M230]
gi|449264427|gb|EMC61769.1| thymidylate kinase [Streptococcus mutans U2B]
Length = 212
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 40/218 (18%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA------HDSLLRR 110
K I FEG DG GK+ TV + + LK +++ RE D +L
Sbjct: 3 KGIFISFEGPDGAGKT----TVLEAILPQLKKLVAKEVITTREPGGVAIAESIRDLILDV 58
Query: 111 AYYSLGN------YIAA------QDIKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSD 156
+ ++ + YIAA + I +L+K +V+ DRF S+ AY G L
Sbjct: 59 NHTNMDDKTELLLYIAARRQHLVERILPELKKGNLVLVDRFIDSSVAYQGYGRGL----- 113
Query: 157 LKLPDEDDDIYSW----PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKF 212
D D +W D ++PDL +Y V I L R+ + K + +L++
Sbjct: 114 ------DADAVTWLNNFATDGLQPDLTLYFDVDSQIGLTRIEKNKEREVNRLDLEQLDMH 167
Query: 213 RELLTTIYR-NMNNPELVFVDNSEKSVHESSNDIVELI 249
R + + + NP+ + ++ + + E D + +I
Sbjct: 168 RRVRSGYLKLAQENPDRIVTIDAARPLEEVITDALFII 205
>gi|344205412|ref|YP_004790554.1| thymidylate kinase [Mycoplasma putrefaciens KS1]
gi|343957335|gb|AEM69050.1| thymidylate kinase [Mycoplasma putrefaciens KS1]
Length = 213
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 33/211 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMS--LREKFDAHDSLLRRAY 112
I FEG+DG GK+ V +L K + P +++ +R+ +++L +
Sbjct: 2 FITFEGIDGSGKTTALLDVKSELEKMGYKVLVTREPGGELIAEQIRKILLDNNNLTINPW 61
Query: 113 YSLGNYIAAQDIKQDLQK--QP-------VVMDRFWHSTSAY-GMANEL-VKNSDLKLPD 161
+IAA+ K+ L+K +P V+ DRF STSAY G A E+ V+N
Sbjct: 62 TEALLFIAAR--KEHLEKVIKPALKNNIIVISDRFIDSTSAYQGSAREIGVENV------ 113
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK-FRELLTTIY 220
D I + PDL ++ +S + R++ R T +N L K K F++ + Y
Sbjct: 114 --DRIQNTVLGDCIPDLTLFFDISFDLAEARINIRGKTT--KNRLDKEKKDFKQKVYQGY 169
Query: 221 RNM--NNPELVFVDNSEKSVHESSNDIVELI 249
+ + NP+ + V ++ K++ S +E I
Sbjct: 170 KTLIKKNPDRIKVIDASKTLDIVSKQALEFI 200
>gi|6322517|ref|NP_012591.1| Cdc8p [Saccharomyces cerevisiae S288c]
gi|1170719|sp|P00572.2|KTHY_YEAST RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|3318768|pdb|2TMK|A Chain A, Yeast Thymidylate Kinase Complexed With 3'-Azido-3'-
Deoxythymidine Monophosphate (Azt-Mp)
gi|3318769|pdb|2TMK|B Chain B, Yeast Thymidylate Kinase Complexed With 3'-Azido-3'-
Deoxythymidine Monophosphate (Azt-Mp)
gi|3318847|pdb|1TMK|A Chain A, Yeast Thymidylate Kinase Complexed With Thymidine
Monophosphate (Dtmp)
gi|3318848|pdb|1TMK|B Chain B, Yeast Thymidylate Kinase Complexed With Thymidine
Monophosphate (Dtmp)
gi|4558230|pdb|3TMK|A Chain A, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
gi|4558231|pdb|3TMK|B Chain B, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
gi|4558232|pdb|3TMK|C Chain C, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
gi|4558233|pdb|3TMK|D Chain D, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
gi|4558234|pdb|3TMK|E Chain E, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
gi|4558235|pdb|3TMK|F Chain F, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
gi|4558236|pdb|3TMK|G Chain G, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
gi|4558237|pdb|3TMK|H Chain H, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
gi|172971|gb|AAB05644.1| thymidylate kinase [Saccharomyces cerevisiae]
gi|1015725|emb|CAA89585.1| CDC8 [Saccharomyces cerevisiae]
gi|1019679|gb|AAB39283.1| ORF YJR057w [Saccharomyces cerevisiae]
gi|151945125|gb|EDN63376.1| thymidylate kinase [Saccharomyces cerevisiae YJM789]
gi|285812946|tpg|DAA08844.1| TPA: Cdc8p [Saccharomyces cerevisiae S288c]
gi|349579242|dbj|GAA24405.1| K7_Cdc8p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 216
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 87/208 (41%), Gaps = 30/208 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK--STPPSS--IMSLREKFDAHDSL-----LRR 110
LI+ EGLD GK+ + KKL+ + K P S I L ++ DS
Sbjct: 7 LILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIH 66
Query: 111 AYYSLGNYIAAQDIKQD-LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
+S + IK+D L+ + +VMDR+ +S AY A DL + D
Sbjct: 67 LLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKG-TNGMDLDWCLQPD----- 120
Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPE-- 227
L+KPDL ++L+ + + + + F E E KF+E + + + + E
Sbjct: 121 -VGLLKPDLTLFLSTQD---VDNNAEKSGFGDERYE---TVKFQEKVKQTFMKLLDKEIR 173
Query: 228 -----LVFVDNSEKSVHESSNDIVELIH 250
+ VD + K + E I +++
Sbjct: 174 KGDESITIVDVTNKGIQEVEALIWQIVE 201
>gi|355750994|gb|EHH55321.1| hypothetical protein EGM_04505 [Macaca fascicularis]
Length = 212
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 86/208 (41%), Gaps = 45/208 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + + L +ST ++S L +K D
Sbjct: 4 RRGALIVLEGVDRAGKSTQSRKLVETLXXXXXXXXXXXFLERSTEIGKLLSSYLEKKSDV 63
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +++DR+ S A+ A E K D+
Sbjct: 64 EDHAV-HLLFSANRWEQVPLIKEKLSQGVTLIVDRYAFSGVAFTGAKENFSLDWCKQPDV 122
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
LP KPDLV++L ++L ++R + E E N F+E
Sbjct: 123 GLP--------------KPDLVLFLQ----LQLADAAKRGAYGHERYE---NRAFQERAL 161
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
+ + N ++V S ++VHE
Sbjct: 162 QCFHQLMRDATLNWKMVDASKSIEAVHE 189
>gi|240950250|ref|ZP_04754530.1| thymidylate kinase [Actinobacillus minor NM305]
gi|257465436|ref|ZP_05629807.1| thymidylate kinase [Actinobacillus minor 202]
gi|240295251|gb|EER46050.1| thymidylate kinase [Actinobacillus minor NM305]
gi|257451096|gb|EEV25139.1| thymidylate kinase [Actinobacillus minor 202]
Length = 209
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 31/215 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMSLREKFDAHDSLLR 109
IV EGL+G GK+ Q + +L+A+ TP + + K D + +
Sbjct: 5 FIVLEGLEGAGKTTAHQAILAQLEAAGIHHIVQTREPGGTPLAEKLRHLIKHDLEEPVND 64
Query: 110 RAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
+A L Y A + +++ K P + + W + M+++ + +L D +
Sbjct: 65 KAEL-LMLYAARVQLVENVIK-PALAEGKWVLGDRHDMSSQAYQGGGRQL---DRQLLET 119
Query: 170 PKDLM----KPDLVIYLTVSEAIRLQRLSRRKNF-TLEENEL----KKNAKFRELLTTIY 220
K + +PDL IYL + AI L+R R +E+ L + ++ EL
Sbjct: 120 LKQTILGDFEPDLTIYLDIDPAIGLERARGRGELDRIEQQSLDFFYRTRQRYLEL----- 174
Query: 221 RNMNNPELVFVDNSEKSVHESSNDIVELIHNLPMF 255
NN + V + N+E+ + + + DI + + N F
Sbjct: 175 -TQNNDKAVII-NAEQPIEKVAADIQQAVENFLKF 207
>gi|313664899|ref|YP_004046770.1| dTMP kinase [Mycoplasma leachii PG50]
gi|392388527|ref|YP_005906936.1| thymidylate kinase [Mycoplasma leachii 99/014/6]
gi|312949571|gb|ADR24167.1| dTMP kinase [Mycoplasma leachii PG50]
gi|339276172|emb|CBV66751.1| Thymidylate kinase [Mycoplasma leachii 99/014/6]
Length = 213
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 35/212 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMS--LREKFDAHDSLLRRAY 112
I FEG+DG GK+ V ++L K + P +++ +R+ + + +
Sbjct: 2 FITFEGMDGSGKTTALLKVKEELERLNYKVLITREPGGEVIAEQIRQIILDNKNKNMDVW 61
Query: 113 YSLGNYIAAQD------IKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSDLKLPDEDD 164
+IA+++ IK L+K +V+ DRF STSAY G A +N + + ++
Sbjct: 62 TEALLFIASRNQHLQKVIKPALEKNIIVISDRFIDSTSAYQGSA----RNIGVDVVNQVQ 117
Query: 165 DIYSWPKDLMKPDLVIYLTVS-----EAIRLQRLSRRKNFTLEENELKKNA--KFRELLT 217
I K+ + PDL ++ VS + ++L+ S + EEN K+ + EL+
Sbjct: 118 QIV--LKNCL-PDLTLFFDVSFSEAEKRMQLRGESSKNRLDEEENNFKQKVYQGYLELIK 174
Query: 218 TIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
NNPE + V ++ K + + N +++I
Sbjct: 175 ------NNPERIKVIDANKDIDQVYNQAIKII 200
>gi|240277647|gb|EER41155.1| thymidylate kinase [Ajellomyces capsulatus H143]
gi|325093734|gb|EGC47044.1| thymidylate kinase [Ajellomyces capsulatus H88]
Length = 232
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 96/215 (44%), Gaps = 37/215 (17%)
Query: 51 GVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTP----PSSIMSLREKFDAHDS 106
G ++ LIV EGLD GKS ++ K L+ P + + +A+
Sbjct: 6 GSNKKQRGALIVLEGLDRAGKSTQCASLQKTLQEEGHEVKYRRFPDRTTEIGKLINAY-- 63
Query: 107 LLRRA---------YYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSD 156
L++ A +S + AA +I++D+ V++DR+ +S + Y A +
Sbjct: 64 LMQNAQLDDHSIHLLFSANRWEAAAEIQRDISNGITVIIDRYSYSGAVYSAAKNI---PG 120
Query: 157 LKLPDEDDDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214
L L ++W + L +PD+ ++L +S + ++R + +E E N F+
Sbjct: 121 LSLE------WAWQPEIGLPQPDIWLFLNISP----EEAAKRGGYGMERYE---NDAFQT 167
Query: 215 LLTTIYRNM---NNPELVFVDNSEKSVHESSNDIV 246
+ +++ + +P V V ++ ++ E + D++
Sbjct: 168 RIRQLFQELVAREDPNNVHVVDASRAESEVALDVI 202
>gi|161529215|ref|YP_001583041.1| thymidylate kinase [Nitrosopumilus maritimus SCM1]
gi|160340516|gb|ABX13603.1| thymidylate kinase [Nitrosopumilus maritimus SCM1]
Length = 193
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 32/202 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAK-----KLKASLKSTPPSSI---MSLREKFDAHDSLLRRA 111
+IV EG D GK S + K K+K L P +R+ D +
Sbjct: 2 IIVIEGGDQAGKLTQSTMLEKALKKRKIKTKLFHFPDYKTHIGKEIRQYLDGKRKFPPQV 61
Query: 112 YYSL---GNYIAAQDIKQDLQKQPV-VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
+ L + + IK +K V +M+R++HS YG+AN + ++ +
Sbjct: 62 IHCLLSANRWEKLEQIKTAQEKNSVLIMNRYYHSNLVYGLANGM----------KEKWLE 111
Query: 168 SWPKDLMKPDLVIYLTVS--EAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNN 225
S L K DLVI L V+ E+ Q+ +R ++ +KN +F ++ IY+
Sbjct: 112 SLDAGLPKADLVILLDVTQKESFNRQKTNR--------DKFEKNEEFLRKISRIYKTTAK 163
Query: 226 PELVFVDNSEKSVHESSNDIVE 247
+ + ++ KS E +I++
Sbjct: 164 KKRWKIIDATKSKQEVHEEIMK 185
>gi|384246983|gb|EIE20471.1| hypothetical protein COCSUDRAFT_48524 [Coccomyxa subellipsoidea
C-169]
Length = 226
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 93/218 (42%), Gaps = 34/218 (15%)
Query: 48 QDSGVGDDR--KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTP----PSSIMSLREKF 101
Q+ GV + + ++FEG+D CGK+ SQ + + LK + P ++
Sbjct: 3 QNGGVSSQKSGRGAFLLFEGVDRCGKTTQSQRLVEYLKGKGVAAELWRFPDRYTAIGRMI 62
Query: 102 DAH-------DSLLRRAYYSLGNYIAAQDIKQDLQ-KQPVVMDRFWHSTSAYGMANELVK 153
D++ D +S + + + L +V+DR+ +S +A+ A + V
Sbjct: 63 DSYLSGETEADDAAVHLLFSANRWEKREAMLAALHAGHTLVVDRYAYSGAAFTAAKK-VP 121
Query: 154 NSDL---KLPDEDDDIYSWPKDLMKPDLVIYLTVS-EAIRLQRLSRRKNFTLEENELKKN 209
DL K PD K L PD VIYL++S EA L+ ++ + EE + + +
Sbjct: 122 GLDLEWCKAPD---------KGLPAPDAVIYLSMSPEAAALRGGYGKERYEKEEMQKEVS 172
Query: 210 AKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVE 247
+F L + ++ + V K+V +I E
Sbjct: 173 RQFALLADDTWHTVDAAQSV------KAVESQVQEIAE 204
>gi|424812615|ref|ZP_18237855.1| thymidylate kinase [Candidatus Nanosalinarum sp. J07AB56]
gi|339756837|gb|EGQ40420.1| thymidylate kinase [Candidatus Nanosalinarum sp. J07AB56]
Length = 207
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 23/145 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL----KASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL 115
+ EG DG GK+ ++ +A L K L++ P+ + +DA ++ L + +
Sbjct: 10 FVAIEGCDGAGKTVQAKRLADNLRDRGKDVLETQEPTDFRCGKAVYDAIENDL--SPEAA 67
Query: 116 GNYIAAQDIKQDLQKQ---------PVVMDRFWHSTSAYGMA-NELVKNSDLKLPDEDDD 165
G AA D Q L+++ VV DR+ HS+ AY A + DL+
Sbjct: 68 GMQFAA-DRLQHLERRIEPALSKGKTVVCDRYVHSSLAYQPALQHRTREVDLER------ 120
Query: 166 IYSWPKDLMKPDLVIYLTVSEAIRL 190
++ + +++ +PDL + L ++ A L
Sbjct: 121 VHQFNREITRPDLTVLLDINPATGL 145
>gi|325967673|ref|YP_004243865.1| thymidylate kinase [Vulcanisaeta moutnovskia 768-28]
gi|323706876|gb|ADY00363.1| thymidylate kinase [Vulcanisaeta moutnovskia 768-28]
Length = 199
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 85/209 (40%), Gaps = 38/209 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSSIMS--LREKF------DAHDS 106
+ EG+DG GKS + KKL+++ + P S + +R+ AH S
Sbjct: 2 FVAVEGIDGVGKSTVISMLRKKLESNGYRVYTTAEPSQSPIGRLIRDWLLKPSSNAAHPS 61
Query: 107 LLRRAYYS--LGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD 164
+ + + + +Y K D V+ +R+ ST AY A + LP E
Sbjct: 62 IFALLFTADRVQHYYGEVKPKLD-SGYLVITERYMESTLAYQGA--------MGLPQE-- 110
Query: 165 DIYSWPKDLM----KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY 220
W +L +PDL I L + RLS R+ + E + +K RE L
Sbjct: 111 ----WLMELHRFVPRPDLTIILDAPIETVIGRLSNRRELEVFEVNKEFLSKVREFLLRRA 166
Query: 221 RNMNNPELVFVDNSEKSVHESSNDIVELI 249
N P V N+++ + NDI ELI
Sbjct: 167 STNNYP----VINADRDLESIVNDIYELI 191
>gi|326480672|gb|EGE04682.1| thymidylate kinase [Trichophyton equinum CBS 127.97]
Length = 235
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 93/208 (44%), Gaps = 31/208 (14%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTV----------AKKLKASLKSTPPSSIMS--LREKFDA 103
R+ L+V EGLD GKS + K ++ ++T +++ LR +
Sbjct: 11 RRGALVVVEGLDRAGKSTQCARLHQFLVNQGHETKYIRFPDRTTAIGKMINQYLRGEIQL 70
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
D + +S + AA I++D++ V++DR+ +S + Y A E N +L+L
Sbjct: 71 DDHAV-HLLFSANRWEAAAQIRRDIESGITVIVDRYSYSGAVYSAAKE---NKELQLD-- 124
Query: 163 DDDIYSWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKKNAKFRELLTTI 219
++W + L +PD+ +L +S + + R + E E + K +L ++
Sbjct: 125 ----WAWRPEVGLPRPDIWFFLNISTEV----AAARGGYGTERYETVNLQKKVGKLFLSL 176
Query: 220 YRNMNNPELVFVDNSEKSVHESSNDIVE 247
N ++ VD + + + E S +I E
Sbjct: 177 TGLKGNEDMRVVD-AGREIDEISREIQE 203
>gi|326389200|ref|ZP_08210768.1| thymidylate kinase [Thermoanaerobacter ethanolicus JW 200]
gi|325994563|gb|EGD52987.1| thymidylate kinase [Thermoanaerobacter ethanolicus JW 200]
Length = 203
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 32/208 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFD------AHDSLLRR--- 110
I FEG+DGCGK+ + + + L LK +I+ LRE D LL +
Sbjct: 5 FISFEGIDGCGKTTQIKFLEEYL---LKQG--YNILVLREPGGTKVGEKVRDILLDKNNF 59
Query: 111 --------AYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
Y S + + I L+K Q V++DRF S+ Y + +KL +
Sbjct: 60 ISPVTEMLLYASSRAQLVEEKILPALEKGQIVILDRFVDSSYVYQGYARGLGIEKVKLVN 119
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYR 221
E + + PD+ IY+ ++ ++R +R+ LE+ + K RE + +
Sbjct: 120 EIATMG------ILPDVTIYIDITPEEAMKRRGKREADRLEKESWGFHKKVREGYIKLVK 173
Query: 222 NMNNPELVFVDNSEK--SVHESSNDIVE 247
VF+D ++ VH+ D+V+
Sbjct: 174 EFPK-RFVFIDGMQELMKVHQDIIDVVK 200
>gi|407465667|ref|YP_006776549.1| thymidylate kinase [Candidatus Nitrosopumilus sp. AR2]
gi|407048855|gb|AFS83607.1| thymidylate kinase [Candidatus Nitrosopumilus sp. AR2]
Length = 200
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 37/183 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS-LKS---------TPPSSIMSLREKFDA------ 103
+IV EG D GK S + K LK +K+ TP +R+ D
Sbjct: 2 IIVIEGGDQAGKLTQSTLLEKALKKQKIKTKLFHFPDYDTPIGK--EIRKYLDGKRKFPP 59
Query: 104 ---HDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLP 160
H L + +AA++ + ++M+R++HS YG+AN L K L+
Sbjct: 60 QVIHCLLAANRWEKFDEILAAEE-----KNSVLIMNRYYHSNLVYGLANGL-KQKWLETL 113
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSR-RKNFTLEENELKKNAKFRELLTTI 219
D+ L K DLVI L V++ R + ++ ++ ++ +KN +F ++ I
Sbjct: 114 DD---------GLPKADLVILLDVTQKESFSRSPQNQRGKIMKRDKFEKNKQFSRKISQI 164
Query: 220 YRN 222
YR
Sbjct: 165 YRT 167
>gi|383458001|ref|YP_005371990.1| deoxynucleoside kinase [Corallococcus coralloides DSM 2259]
gi|380732567|gb|AFE08569.1| deoxynucleoside kinase [Corallococcus coralloides DSM 2259]
Length = 213
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 28/211 (13%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTP-PSSIMSLREKFDAHDSLL 108
D +Y IV EG G GK+ + + ++L + ++ P SS + R+KF +
Sbjct: 2 DHRY--IVVEGPIGVGKTSLTNLLTERLGSRRILEVVEENPFLSSFYADRQKF----AFQ 55
Query: 109 RRAYYSLGNYIAAQDI-KQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
+ ++ L + Q++ +QDL + V D + + AN + + +L L D +
Sbjct: 56 TQVFFLLSRFRQQQELFQQDLFRSVTVSDYLFAKDRIF--ANLTLASDELALYDRVFEAL 113
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM---- 223
P+ + +PDLVIYL + L R+ +R E E K +A + E LT Y +
Sbjct: 114 G-PR-VPQPDLVIYLQAQLDVLLHRIKKRGR----EFERKFDAGYLESLTHAYNDFFAHY 167
Query: 224 -NNPELVFVDNSEKSVH--ESSNDIVELIHN 251
+ P LV + VH + D+++ I N
Sbjct: 168 QDTPLLVVNTSDIDFVHNEDDREDLLKTIAN 198
>gi|428202559|ref|YP_007081148.1| thymidylate kinase [Pleurocapsa sp. PCC 7327]
gi|427979991|gb|AFY77591.1| thymidylate kinase [Pleurocapsa sp. PCC 7327]
Length = 215
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 87/207 (42%), Gaps = 52/207 (25%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS-----------LRE--------- 99
IVFEG+DG G S T A LK S +I+S +RE
Sbjct: 5 FIVFEGIDGSGTS----TQASLLKDYFLSQGDRAIVSPEPSNGPIGKLIREALQNKTILI 60
Query: 100 ----KFDAHDSLLRRA--YYSLGNYI-AAQDIKQDLQKQPVVMDRFWHSTSAYGMAN--- 149
KFD + L A +Y L N I + +D + V+ R++ S+ AY N
Sbjct: 61 QDSQKFDEQMAYLFAADRHYHLYNDIDGVFKLIRD-ENTHVITPRYYFSSLAYNCNNQQD 119
Query: 150 -ELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK 208
E V+N + + P+ PDLVIYL + + L+R+ R ++F +K
Sbjct: 120 FEFVRNLNQRFPN--------------PDLVIYLDLPIEVALERI-RARSFKEVYEHQEK 164
Query: 209 NAKFRELLTTIYRNMNNPELVFVDNSE 235
K R I+ N ++ L+ VD +E
Sbjct: 165 LLKVRHNYQYIFENYHSL-LLKVDGTE 190
>gi|58265708|ref|XP_570010.1| thymidylate kinase [Cryptococcus neoformans var. neoformans JEC21]
gi|57226242|gb|AAW42703.1| thymidylate kinase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 217
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 40/177 (22%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMSLREKFDAH-------DSL 107
IVFEGLD CGKS + ++L +A L+ P + + + DA+ D
Sbjct: 9 FIVFEGLDRCGKSTQVDRLVQRLERQGHRARLQKFPERT-TQIGKMIDAYLQSKTEIDDH 67
Query: 108 LRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDI 166
+S + + I++DL V+ DR+ S A+ A L + L PD
Sbjct: 68 AIHLLFSANRWECSAAIRRDLANGITVIADRYAFSGIAFSAAKGLPFDFCLH-PD----- 121
Query: 167 YSWPKDLMKPDLVIYLTVS---------------EAIRLQRLSRRKNFTLEENELKK 208
L PD+ +YLT+ E++ +Q+ + R+ F L NE+KK
Sbjct: 122 ----AGLPLPDVTLYLTLPPETAAKRSAYGEERYESVSIQQ-AVRQQFKLVANEIKK 173
>gi|288818972|ref|YP_003433320.1| thymidylate kinase [Hydrogenobacter thermophilus TK-6]
gi|384129720|ref|YP_005512333.1| thymidylate kinase [Hydrogenobacter thermophilus TK-6]
gi|288788372|dbj|BAI70119.1| thymidylate kinase [Hydrogenobacter thermophilus TK-6]
gi|308752557|gb|ADO46040.1| thymidylate kinase [Hydrogenobacter thermophilus TK-6]
Length = 199
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 23/153 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTV-----AKKLKASLKSTPPSSIMS--LRE-----KFDAHDSL 107
LI EG+DG GK+ + + +K KASL P S+ ++ +RE D L
Sbjct: 5 LITLEGIDGSGKTTQANLLYEYLRSKGHKASLYRDPGSTPLAEKIRELIMSFSLDPITEL 64
Query: 108 LRRAYYSLGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSDLKLPDEDDD 165
L + + + + + I DLQK VV+ DRF ST AY G E+ +L + +
Sbjct: 65 L--LFETARSSLVWEKILPDLQKGNVVIVDRFIDSTVAYQGYGREI----NLGTVNVLNH 118
Query: 166 IYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN 198
I + + KPDL L V + L R+ + K
Sbjct: 119 IATRGR---KPDLTFILHVPLEVALSRIGKDKT 148
>gi|400289749|ref|ZP_10791776.1| thymidylate kinase [Streptococcus ratti FA-1 = DSM 20564]
gi|399920540|gb|EJN93357.1| thymidylate kinase [Streptococcus ratti FA-1 = DSM 20564]
Length = 212
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 40/219 (18%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA------HDSLLRR 110
K I FEG DG GK+ TV K++ SL+ + ++ RE D +L
Sbjct: 3 KGIFISFEGPDGAGKT----TVLKEILPSLRKMTENEVLLTREPGGVSIAESIRDVILDV 58
Query: 111 AYYSLGN------YIAA------QDIKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSD 156
+ ++ + Y+AA + I L+K +V+ DRF S+ AY G L
Sbjct: 59 KHTNMDDKTELLLYMAARRQHLVERILPALEKGSLVLADRFIDSSVAYQGYGRGL----- 113
Query: 157 LKLPDEDDDIYSW----PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKF 212
D +W D +KPDL +Y V I L R+ + K + +L+K
Sbjct: 114 ------DTAAVTWLNNFATDGLKPDLTLYFDVDSEIGLARIEQNKEREVNRLDLEKIDMH 167
Query: 213 RELLTTIYR-NMNNPELVFVDNSEKSVHESSNDIVELIH 250
+ + + + NPE + ++ + ++E + + + +I
Sbjct: 168 QRVRSGYLKLAAENPERIVTIDASRPLNEVAEEALLVIQ 206
>gi|322515570|ref|ZP_08068551.1| dTMP kinase [Actinobacillus ureae ATCC 25976]
gi|322118373|gb|EFX90639.1| dTMP kinase [Actinobacillus ureae ATCC 25976]
Length = 208
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 93/211 (44%), Gaps = 30/211 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK---------STPPSSIMSLREKFDAHDSLLRR 110
IV EGL+G GK+ Q + +L+ + K TP + + K + +++ +
Sbjct: 5 FIVLEGLEGAGKTTAHQVILAQLEKAGKNVVQIREPGGTPLAEKLRHLIKHETEEAVSDK 64
Query: 111 AYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
A L Y A + +++ K P + + W + M+++ + ++ D +
Sbjct: 65 AEL-LMLYAARIQLVENVIK-PALAEGKWVLGDRHDMSSQAYQGGGRQI---DRHLLETL 119
Query: 171 KDLM----KPDLVIYLTVSEAIRLQRLSRRKNF-TLEENEL----KKNAKFRELLTTIYR 221
K+ + +PDL IYL + AI L R R +E+ L + ++ EL
Sbjct: 120 KETVLGKFEPDLTIYLDIDPAIGLARAIGRGELDRIEQQSLDFFYRTRQRYLEL------ 173
Query: 222 NMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
NN + V + N+E+S+ + + DI + + N
Sbjct: 174 TQNNEKAVII-NAEQSIEQVAADIQQAVENF 203
>gi|406898271|gb|EKD41930.1| deoxynucleoside kinase, partial [uncultured bacterium]
Length = 197
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKAS--LKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNY 118
+V EG G GK+ ++ +A+ L A L+ + + + + + ++ L Y
Sbjct: 7 LVVEGPIGVGKTTMAKMLAEDLGAREVLEEANKNPFLGPFYENPQQHAFQTQLFFLLSRY 66
Query: 119 IAAQDIKQ-DLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW-PKDLMKP 176
+IKQ DL +Q V D + + N + DL ++IYS L KP
Sbjct: 67 RQQLEIKQQDLFQQITVCDYLFAKDRIFASMNLSPEEMDLY-----NNIYSLLDARLPKP 121
Query: 177 DLVIYLTVSEAIRLQRLSRRKN 198
DLVI+L S + ++R+ R +
Sbjct: 122 DLVIFLQASPKVLMERIDERGD 143
>gi|210623262|ref|ZP_03293679.1| hypothetical protein CLOHIR_01629 [Clostridium hiranonis DSM 13275]
gi|210153663|gb|EEA84669.1| hypothetical protein CLOHIR_01629 [Clostridium hiranonis DSM 13275]
Length = 227
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 27/219 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA-----------SLKSTPPSSI-MSLREKFDAH--- 104
+I+ G D GK+ S+ + KKL A + KS + + M LR F H
Sbjct: 9 IIIESGSDASGKATQSEELLKKLTADGYNVRKVEYPNYKSESSTLVKMYLRGDFGKHADD 68
Query: 105 -DSLLRRAYYSLGNYIAAQDIKQDLQKQP--VVMDRFWHSTSAYGMANELVKNSDLKLPD 161
D+ + +++ Y + + ++ + V+ DR+ S + + ++ D L
Sbjct: 69 VDAYIASTFFTADRYASFKTEWEEFYRSGGIVIADRYTTSNMVHQASKMEIEERDKYLDW 128
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN-FTLEE----NELKKNAKFRELL 216
+D Y+ K + +PD VI+L V ++ + RKN FT EE +E KN +
Sbjct: 129 LEDYEYNLFK-IPRPDEVIFLNVPVDYSIKLMENRKNKFTGEEEKDIHESDKNYLRKTYN 187
Query: 217 TTIY--RNMNNPELVFVDNSE-KSVHESSNDIVELIHNL 252
++Y N + V+N + +++ + SN+I E++ N+
Sbjct: 188 NSLYIADKYNWKRVECVENEQLRTIEDISNEIYEIVKNI 226
>gi|295698602|ref|YP_003603257.1| thymidylate kinase [Candidatus Riesia pediculicola USDA]
gi|291157415|gb|ADD79860.1| thymidylate kinase [Candidatus Riesia pediculicola USDA]
Length = 217
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 28/194 (14%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKL-KASL--------KSTPPSSIMS--LREKFDAHDSLLR 109
IV EGL+G GK+ V K L K TP S + +++ F L++
Sbjct: 11 IVVEGLEGSGKTTMIGFVKKMLIKEGFDILTVREPGGTPISEKIRKLIKKNFPEEKFLVK 70
Query: 110 RAYYSLGNYIAAQDIKQDL------QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
+ Y A + +++ + V+ DR + S+ AY VK+ DE
Sbjct: 71 TELFMF--YAARIQLMENIILPNLKSGKWVIGDRNFLSSYAYQGGKYGVKD------DEI 122
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM 223
D I +PDL+IYL V I + R+ RK+ L+ E K++ F + Y N+
Sbjct: 123 DKINKIAIGKFQPDLIIYLDVFPEIGISRIHERKSSKLDRIE-KRSLDFFHQVRNRYLNI 181
Query: 224 --NNPELVFVDNSE 235
N E + +D ++
Sbjct: 182 IKNQKEFMIIDANQ 195
>gi|317495399|ref|ZP_07953768.1| thymidylate kinase [Gemella morbillorum M424]
gi|316914458|gb|EFV35935.1| thymidylate kinase [Gemella morbillorum M424]
Length = 208
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 75/201 (37%), Gaps = 40/201 (19%)
Query: 57 KYPLIVFEGLDGCGK-----SHTSQTVAKKLKASLKSTPPSSIMSLREK---FDAHDSLL 108
K I EG DG GK S T + K K P ++ S + + FD+ + +
Sbjct: 2 KGKFITVEGSDGSGKTTFINSATEYLIKKGYKVITTREPGGTVFSEKVRELLFDSSNEID 61
Query: 109 RRA-----YYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
+ S ++I + I + V+ DRF S+ AY + D+
Sbjct: 62 AKTESLLFCVSRRDHIIKKIIPYVEEGYIVICDRFVDSSIAYQSYGRGLNKQDII----- 116
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM 223
DI + D ++PDL +Y V I L R R +EN M
Sbjct: 117 -DINKYTTDGLEPDLTLYFNVDVEIGLSRTKGR-----DEN----------------NRM 154
Query: 224 NNPELVFVDNSEKSVHESSND 244
+N L F + ++ E SND
Sbjct: 155 DNESLKFYKDVKRGYDELSND 175
>gi|354545174|emb|CCE41901.1| hypothetical protein CPAR2_804510 [Candida parapsilosis]
Length = 227
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 26/205 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL------KSTPPSSIMS---LREKFDAHDSLLRR 110
LI+ EGLD GKS + +A + S +ST +++ ++F D
Sbjct: 6 LILIEGLDRSGKSTQASILASRFTQSKLIKFPERSTAIGQLINEYLTNKQFQLSDQ-SAH 64
Query: 111 AYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMAN----ELVKNSDLKLPDEDDD 165
+S + Q+I L Q V++DR+ +S AY +A E ++ D +
Sbjct: 65 LLFSANRWELNQEILNLLHQGYFVILDRYIYSGIAYTLAKHKDMETTGATEATSVDSSTN 124
Query: 166 I--YSW----PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-NAKFRELLTT 218
+ W K L KPDL ++LT+ + +S RK + E E+ + ++ ++
Sbjct: 125 LSNVEWLLAPDKGLPKPDLTMFLTLD----MDEISSRKGWGDERYEMVEFQSRVKQCFLE 180
Query: 219 IYRNMNNPELVFVDNSEKSVHESSN 243
+ + ++P + VD +KS+ + ++
Sbjct: 181 VLDDASDPSVRIVDVGKKSIEQVAD 205
>gi|148264612|ref|YP_001231318.1| thymidylate kinase [Geobacter uraniireducens Rf4]
gi|146398112|gb|ABQ26745.1| thymidylate kinase [Geobacter uraniireducens Rf4]
Length = 227
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 95/230 (41%), Gaps = 55/230 (23%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS---------LKSTPPSSIMSLREKFDAHDSLLRR 110
LIV EG DG G+S + + L+ L+ST S ++ ++ + + R
Sbjct: 20 LIVIEGADGSGRSTQMELLKDYLEGKGHATVNVGLLRSTLVSEELNEAKQGNVLGEITRS 79
Query: 111 AYYSLGNYIAAQDIKQDLQKQP---------VVMDRFWHSTSAYGMANELVKNSDLKLPD 161
+Y A D L+ + V+ DR+ ++ MA ++V+ +D
Sbjct: 80 LFY-------ATDFADQLENRIIPAMKAGFIVLADRYIYTL----MARDIVRGAD----- 123
Query: 162 EDDDIYSWPKDL----MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKN-------- 209
W + L + PDLVIYL VS A ++R + RKN TL+ E +
Sbjct: 124 -----RDWVRALYGIAVVPDLVIYLRVSPAQLVER-NFRKNSTLDYWEAGMDLGLSRDIF 177
Query: 210 ---AKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPMFK 256
++++L+ + + V N +S+ +S +I + +L K
Sbjct: 178 DSFMRYQKLIQKEFSLLQQEYGFHVVNGNRSIRSASGEITARVEDLLGIK 227
>gi|32034665|ref|ZP_00134803.1| COG0125: Thymidylate kinase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|126209279|ref|YP_001054504.1| thymidylate kinase [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|165977254|ref|YP_001652847.1| thymidylate kinase [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|190151172|ref|YP_001969697.1| thymidylate kinase [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|303252694|ref|ZP_07338856.1| thymidylate kinase [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|307246746|ref|ZP_07528815.1| Thymidylate kinase [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|307248888|ref|ZP_07530899.1| Thymidylate kinase [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|307255731|ref|ZP_07537534.1| Thymidylate kinase [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307257916|ref|ZP_07539670.1| Thymidylate kinase [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|307260183|ref|ZP_07541892.1| Thymidylate kinase [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|307262310|ref|ZP_07543958.1| Thymidylate kinase [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|307264521|ref|ZP_07546105.1| Thymidylate kinase [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
gi|407693240|ref|YP_006818029.1| thymidylate kinase [Actinobacillus suis H91-0380]
gi|229487547|sp|A3N3B3.1|KTHY_ACTP2 RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|238687523|sp|B0BSY9.1|KTHY_ACTPJ RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|238692362|sp|B3GZ69.1|KTHY_ACTP7 RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|126098071|gb|ABN74899.1| thymidylate kinase [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|165877355|gb|ABY70403.1| thymidylate kinase [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|189916303|gb|ACE62555.1| thymidylate kinase [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|302648433|gb|EFL78627.1| thymidylate kinase [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|306852352|gb|EFM84588.1| Thymidylate kinase [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|306854583|gb|EFM86775.1| Thymidylate kinase [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|306861291|gb|EFM93282.1| Thymidylate kinase [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306863563|gb|EFM95492.1| Thymidylate kinase [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|306865728|gb|EFM97607.1| Thymidylate kinase [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|306867973|gb|EFM99801.1| Thymidylate kinase [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|306870120|gb|EFN01880.1| Thymidylate kinase [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
gi|407389297|gb|AFU19790.1| thymidylate kinase [Actinobacillus suis H91-0380]
Length = 208
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 30/211 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK---------STPPSSIMSLREKFDAHDSLLRR 110
IV EGL+G GK+ Q + +L+ + K TP + + K + +++ +
Sbjct: 5 FIVLEGLEGAGKTTAHQVILAQLEKAGKNVVQTREPGGTPLAEKLRHLIKHETEEAVSDK 64
Query: 111 AYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
A L Y A + +++ K P + + W + M+++ + ++ D +
Sbjct: 65 AEL-LMLYAARIQLVENVIK-PALAEGKWVLGDRHDMSSQAYQGGGRQI---DRHLLETL 119
Query: 171 KDLM----KPDLVIYLTVSEAIRLQRLSRRKNF-TLEENEL----KKNAKFRELLTTIYR 221
K+ + +PDL IYL + A+ L R R +E+ L + ++ EL
Sbjct: 120 KETVLGNFEPDLTIYLDIDPAVGLARARGRGELDRIEQQSLDFFYRTRQRYLEL------ 173
Query: 222 NMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
NN + V + N+E+S+ + + DI + + N
Sbjct: 174 TQNNEKAVII-NAEQSIEQVAADIQQAVENF 203
>gi|417319428|ref|ZP_12105986.1| thymidylate kinase [Vibrio parahaemolyticus 10329]
gi|433658150|ref|YP_007275529.1| Thymidylate kinase [Vibrio parahaemolyticus BB22OP]
gi|328474618|gb|EGF45423.1| thymidylate kinase [Vibrio parahaemolyticus 10329]
gi|432508838|gb|AGB10355.1| Thymidylate kinase [Vibrio parahaemolyticus BB22OP]
Length = 209
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 84/213 (39%), Gaps = 40/213 (18%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLK-ASLK---------STPPSSIMSLREKFDAHDS 106
K IV EGL+G GKS +TV LK A ++ TP + M K +
Sbjct: 2 KANFIVVEGLEGAGKSTAIKTVLDTLKQAGIENIVNTREPGGTPLAEKMRALVKEEHEGE 61
Query: 107 LLRRAYYSLGNYIAAQDIKQDLQK------QPVVMDRFWHSTSAYGMANE-----LVKN- 154
L+ L Y A + +++ K Q VV DR S+ AY L+KN
Sbjct: 62 ELKDMTELLLLYAARVQLVENVIKPALANGQWVVGDRHDLSSQAYQGGGRQIDASLMKNL 121
Query: 155 SDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214
D L D KP +Y+ + I L+R R E K + F E
Sbjct: 122 RDTTLGD------------FKPAFTLYMDIDPCIGLERARGRGELDRIE---KMDISFFE 166
Query: 215 LLTTIYRNMNN--PELVFVDNSEKSVHESSNDI 245
Y + N P +V + N+E+S+ E S DI
Sbjct: 167 RTRERYLEIANADPSIVVI-NAEQSIEEVSRDI 198
>gi|449980980|ref|ZP_21817520.1| thymidylate kinase [Streptococcus mutans 5SM3]
gi|450078858|ref|ZP_21851170.1| thymidylate kinase [Streptococcus mutans N3209]
gi|449176168|gb|EMB78527.1| thymidylate kinase [Streptococcus mutans 5SM3]
gi|449209719|gb|EMC10227.1| thymidylate kinase [Streptococcus mutans N3209]
Length = 212
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 88/218 (40%), Gaps = 40/218 (18%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYY--- 113
K I FEG DG GK+ TV + + LK +++ RE + RA
Sbjct: 3 KGIFISFEGPDGAGKT----TVLEAILPQLKKLVAKEVITTREPGGVAIAESIRALILDV 58
Query: 114 ---------SLGNYIAA------QDIKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSD 156
L YIAA + I +L+K +V+ DRF S+ AY G L
Sbjct: 59 NHTNMDDKTELLLYIAARRQHLVERILPELKKGNLVLVDRFIDSSVAYQGYGRGL----- 113
Query: 157 LKLPDEDDDIYSW----PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKF 212
D D +W D ++PDL +Y V I L R+ + K + +L++
Sbjct: 114 ------DADAVTWLNNFATDGLQPDLTLYFDVDSQIGLTRIEKNKEREVNRLDLEQLDMH 167
Query: 213 RELLTTIYR-NMNNPELVFVDNSEKSVHESSNDIVELI 249
R + + + NP+ + ++ + + E D + +I
Sbjct: 168 RRVRSGYLKLAQENPDRIVTIDAARPLEEVITDALFII 205
>gi|357431147|gb|AET79203.1| elymoclavine monooxygenase [Claviceps paspali]
Length = 501
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 31/131 (23%)
Query: 7 LFAQYPSLVSVLSILKSAQYSSLPEV------------EELLNIYSRINETNDQDSGV-- 52
LF YP L++VLS++ +++ L V +E L + S NE + +DS
Sbjct: 216 LFLGYPQLLAVLSLIPGTRFARLNAVWTTFTKYCTSWYQEDLRVQSTSNEHSTRDSHTKR 275
Query: 53 --------GDDRKYPLI------VFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLR 98
GDD K ++ VF + G G T+ T A + L S P+ +L
Sbjct: 276 YLAIKERDGDDGKKSIVPKPLDDVFNFVAG-GADTTAYTTASAIFYILSS--PTVCKTLV 332
Query: 99 EKFDAHDSLLR 109
+ DAH S++R
Sbjct: 333 AELDAHSSIIR 343
>gi|171204|gb|AAA34486.1| CDC8 gene [Saccharomyces cerevisiae]
Length = 216
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 32/209 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK-------STPPSSIMS---LREKFDAHDSLLR 109
LI+ EGLD GK+ + KKL+ + K ST +++ + F D +
Sbjct: 7 LILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDTFQLSDQAI- 65
Query: 110 RAYYSLGNYIAAQDIKQD-LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168
+S + IK+D L+ + +VMDR+ +S AY A DL + D
Sbjct: 66 HLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKG-TNGMDLDWCLQPD---- 120
Query: 169 WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPE- 227
L+KPDL ++L+ + + + + F E E KF+E + + + + E
Sbjct: 121 --VGLLKPDLTLFLSTQD---VDNNAEKSGFGDERYE---TVKFQEKVKQTFMKLLDKEI 172
Query: 228 ------LVFVDNSEKSVHESSNDIVELIH 250
+ VD + K + E I +++
Sbjct: 173 RKGDESITIVDVTNKGIQEVEALIWQIVE 201
>gi|449956379|ref|ZP_21809475.1| thymidylate kinase [Streptococcus mutans 4VF1]
gi|450138357|ref|ZP_21872126.1| thymidylate kinase [Streptococcus mutans NLML1]
gi|449170661|gb|EMB73357.1| thymidylate kinase [Streptococcus mutans 4VF1]
gi|449234140|gb|EMC33164.1| thymidylate kinase [Streptococcus mutans NLML1]
Length = 212
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 39/165 (23%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA------HDSLLRR 110
K I FEG DG GK+ TV + + LK +++ RE D +L
Sbjct: 3 KGIFISFEGPDGAGKT----TVLEAILPQLKKLVAKEVITTREPGGVAIAESIRDLILDV 58
Query: 111 AYYSLGN------YIAA------QDIKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSD 156
+ ++ + YIAA + I +L+K +V+ DRF S+ AY G L
Sbjct: 59 NHTNMDDKTELLLYIAARRQHLVERILPELKKGNLVLVDRFIDSSVAYQGYGRGL----- 113
Query: 157 LKLPDEDDDIYSW----PKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
D D +W D ++PDL +Y V I L R+ + K
Sbjct: 114 ------DADAVTWLNNFATDGLQPDLTLYFDVDSQIGLTRIEKNK 152
>gi|227502887|ref|ZP_03932936.1| thymidylate kinase [Corynebacterium accolens ATCC 49725]
gi|306835486|ref|ZP_07468503.1| thymidylate kinase [Corynebacterium accolens ATCC 49726]
gi|227076617|gb|EEI14580.1| thymidylate kinase [Corynebacterium accolens ATCC 49725]
gi|304568652|gb|EFM44200.1| thymidylate kinase [Corynebacterium accolens ATCC 49726]
Length = 204
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 43/191 (22%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYS-LGN- 117
LI EG+DG GK+ T+A ++++L+ P +I R + H L R A Y +G+
Sbjct: 2 LISIEGIDGAGKN----TLATAVRSALE-VPVRTIAFPRYETSIHAQLAREALYGKMGDL 56
Query: 118 ----YIAAQ-------DIKQDLQ-----KQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
Y A IK++L+ ++ V++DR+ S +AY A
Sbjct: 57 TDSAYGMATLFALDRFGIKEELRAAKETREIVILDRYVASNAAYSAARL----------- 105
Query: 162 EDDDIYSWPKDLM-------KPDLVIYL--TVSEAIRLQRLSRRKNFTLEENELKKNAKF 212
DD ++ W DL K DL +Y+ V A + + T E + +++
Sbjct: 106 RDDSLFQWVYDLEFGTLGLPKADLQVYVDTAVEVASARAQSRAATDSTRERDHYERDGGL 165
Query: 213 RELLTTIYRNM 223
+E YR +
Sbjct: 166 QERTAAAYRRL 176
>gi|160933042|ref|ZP_02080431.1| hypothetical protein CLOLEP_01884 [Clostridium leptum DSM 753]
gi|156868116|gb|EDO61488.1| dTMP kinase [Clostridium leptum DSM 753]
Length = 222
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 35/163 (21%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKST----------PPSSI--MSLREKFDAH--- 104
LIV EGLDG GK+ + + + L++ + P S++ M L ++F ++
Sbjct: 6 LIVMEGLDGSGKATQTGLLCQYLESRGRRVRHIEFPDYREPSSALVKMYLNKEFGSNPGD 65
Query: 105 -DSLLRRAYYSLGNYIAAQDI--KQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
++ ++Y++ Y + K L +V DR+ S + Y M K P
Sbjct: 66 VNAYAASSFYAVDRYASFLRFWRKDYLSGATIVADRYTTSNAVYQME---------KTPR 116
Query: 162 EDDDIY-SWPKD-------LMKPDLVIYLTVSEAIRLQRLSRR 196
ED + Y +W +D L +PDLV++L + I + LS R
Sbjct: 117 EDWNKYLAWLQDYEYGKLQLPRPDLVLFLDMPTEISQRLLSGR 159
>gi|427735260|ref|YP_007054804.1| AAA ATPase [Rivularia sp. PCC 7116]
gi|427370301|gb|AFY54257.1| AAA+ family ATPase [Rivularia sp. PCC 7116]
Length = 675
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 14 LVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDD-RKYPLIV-FEGLDGCGK 71
LVS +L+ P E + N+Y + + N + V +D +K PL++ F+G+D GK
Sbjct: 165 LVSCCQLLEQN-----PSAEFIDNLYLKADLQNQLQTIVKEDWQKQPLLLYFQGIDSLGK 219
Query: 72 SHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLL-RRAYY 113
T+Q +A+ L+ L I+ + F+ + LL R A++
Sbjct: 220 RRTAQMLAQTLEIPLLVADLGKILEDKPNFELNLQLLFREAWF 262
>gi|17232200|ref|NP_488748.1| thymidylate kinase [Nostoc sp. PCC 7120]
gi|23821788|sp|Q8YN62.1|KTHY_ANASP RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|17133845|dbj|BAB76407.1| thymidylate kinase [Nostoc sp. PCC 7120]
Length = 211
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 30/210 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA-----SLKSTPPSS----IMSLREKFDAHDSLLRR 110
IVFEG++GCGK+ Q A+ L++ L P + + A D +
Sbjct: 5 FIVFEGVEGCGKTSQMQLCAEWLQSLGISVVLTREPGGTELGLDLRRLLLQKAEDKPIAE 64
Query: 111 AYYSLGNYIA--AQDIKQDL-----QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
L Y A AQ + Q+L Q + ++ DR+ ST AY +N D+ L +
Sbjct: 65 VTELL-LYAADRAQHVAQELKPKLAQGKYILCDRYVDSTIAY---QGYGRNLDMNLIHQL 120
Query: 164 DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM 223
+DI + + D+ I+L V + L R R N L+ E ++ F + Y ++
Sbjct: 121 NDIATGG---LTSDITIWLDVDVEVGLAR-KRGDNVGLDRIE-QETIAFHRRVQQGYADL 175
Query: 224 --NNPE-LVFVDN--SEKSVHESSNDIVEL 248
++P+ ++ VD S+++VH++ +I+ +
Sbjct: 176 AASSPKRIIRVDGQLSKETVHKTIQEILSV 205
>gi|419706439|ref|ZP_14233961.1| Thymidylate kinase (dTMP kinase) [Streptococcus salivarius PS4]
gi|383283822|gb|EIC81764.1| Thymidylate kinase (dTMP kinase) [Streptococcus salivarius PS4]
Length = 209
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 29/154 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFD-AHDSLLRRAYYSLGN- 117
LI EG DG GK+ +V + L LK P +++ RE A +R + N
Sbjct: 6 LISIEGPDGAGKT----SVLEALLPRLKEVYPGQVITTREPGGVAISEQIREVILDVDNT 61
Query: 118 ----------YIAA------QDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLP 160
YIAA + + +L+K V+MDRF S+ AY A ++ +++
Sbjct: 62 AMDAKTELLLYIAARRQHLVEKVLPELEKGNMVIMDRFIDSSVAYQGAGRGLEQTEIAW- 120
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLS 194
+ ++ D KPD+ + V L+R++
Sbjct: 121 -----LNAYATDGHKPDVTLLFDVDSETGLKRIA 149
>gi|282163168|ref|YP_003355553.1| probable thymidylate kinase [Methanocella paludicola SANAE]
gi|282155482|dbj|BAI60570.1| probable thymidylate kinase [Methanocella paludicola SANAE]
Length = 201
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 36/213 (16%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAH--DSLLRRAYY 113
RK LI EG+DG GK+ Q LK L+ ++ +L+E + RRA+
Sbjct: 3 RKGRLITIEGIDGTGKTTQVQL----LKEWLERHGVEAV-ALKEPTQGKYGQEIARRAHA 57
Query: 114 -SLGN----YIAAQDIKQDLQK---------QPVVMDRFWHSTSAYGMANELVKNSDLKL 159
S G + +D ++D++K + V+MDR++ S AY A L D +
Sbjct: 58 GSFGPRDELRLFMEDRREDVEKNIRPALESGKSVIMDRYYLSNMAYQGARGL----DPER 113
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE-ENELKKNAKFRELLTT 218
+++ +S PDL+I L ++ + R++ RKN ENE K R++
Sbjct: 114 IRLENEAFS-----PVPDLIIILDLAPEKSMARVNTRKNVVGHFENEAYLE-KVRKIFLA 167
Query: 219 IYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
I + N V N+E V + IV+ + +
Sbjct: 168 IGKQPN----AVVINTEAPVADVHERIVDAVRD 196
>gi|406959096|gb|EKD86539.1| hypothetical protein ACD_37C00249G0003 [uncultured bacterium]
Length = 223
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 91/209 (43%), Gaps = 26/209 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA----SLKSTPPSSIMSL---REKFDAHDSLLRRAY 112
+V EG++ GK T+Q VAK L+A L P + E + AY
Sbjct: 22 FVVLEGIEASGK--TTQ-VAKLLEAFPDAVLAKNPTDGEIGTFIRNEVLGGRTDIPPVAY 78
Query: 113 ---YSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD---- 164
+S I Q++ + L++ + V+ DR++ S+ AYG + DL + D +
Sbjct: 79 QYLFSADREIFQQELIELLKEGKTVICDRYFWSSVAYGA----IDKEDLDIEDFEQVSLV 134
Query: 165 --DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRN 222
I S + PDL +YL VS L+RL T + + N K ++ + +
Sbjct: 135 SLSILSMYHQFLVPDLTVYLDVSLEESLRRLKDSVKHTEIYDNHETNVKVKKGYEWLIKK 194
Query: 223 MNNPELVFVDNSEKSVHESSNDIVELIHN 251
P+ + V ++ S+ E +VE++ +
Sbjct: 195 F--PDEITVIDANGSIEEVHGKVVEILQS 221
>gi|320582782|gb|EFW96999.1| Thymidylate and uridylate kinase [Ogataea parapolymorpha DL-1]
Length = 210
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 45/202 (22%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREK-FDAHDS 106
LI EGLD GK+ + + ++L S ++TP I++ L +K F+ D
Sbjct: 6 LIAIEGLDRTGKTTQTSRLLERLDKSGVDATLIKFPERTTPIGRIINTYLTDKAFELSDQ 65
Query: 107 LLRRAYYSLGNYIAAQDIKQDLQ-KQPVVMDRFWHSTSAY----GMANELVKNSDLKLPD 161
+S + A+ I+ L+ + VV+DR+ +S AY G+ + + DL LP
Sbjct: 66 SA-HLLFSANRWELAEKIRNLLEDGKTVVLDRYVYSGVAYSSAKGLPFDWCLSPDLGLP- 123
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT--- 218
KPD+V+++ + R+ F E E+ A+F++ + T
Sbjct: 124 -------------KPDIVLFMKFKHEDNVT----REGFGEERYEV---AEFQQRVKTQFE 163
Query: 219 IYRNMNNPELVFVDNSEKSVHE 240
++N +N + ++VDN KS+ E
Sbjct: 164 KFQNEDNWKTIYVDN--KSIEE 183
>gi|72392763|ref|XP_847182.1| thymidylate kinase [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62359227|gb|AAX79670.1| thymidylate kinase, putative [Trypanosoma brucei]
gi|70803212|gb|AAZ13116.1| thymidylate kinase, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 345
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 112/277 (40%), Gaps = 41/277 (14%)
Query: 7 LFAQYPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGV-----GDDRKYPLI 61
+FA Y V VLS+ + ++L + L I + N + V +D + +I
Sbjct: 72 VFAVYSKRVPVLSLTTGGETTNLLQTISSLGIECKQNTSETWADAVRAFLPNNDSESAVI 131
Query: 62 VFEGLDGCGKSHTSQTVAKKL----KASLKSTPPSS-----------IMSLREKFDAHDS 106
VF G DG GK+ ++ + K+L KA PS + R D
Sbjct: 132 VFGGGDGAGKATQTEYMRKRLDKEGKAHASLDFPSDKHRYGKLIRKVLSGERGALHGLDP 191
Query: 107 LLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDD 165
L +SL + +++ L + +++DR++ TS +G + S L+ + D
Sbjct: 192 KLFSLLFSLNRFDTLPELRYWLTHGKKILLDRYY--TSNFGH-----QASKLEESERSDF 244
Query: 166 I-------YSWPKDLMKPDLVIYLTVSEA---IRLQRLSRRKNFTLEENE-LKKNAKFRE 214
I W K L PD+ +YL + A + +QR +R++ + E L R+
Sbjct: 245 IRHLEQLELEWLK-LPPPDVALYLDLPPAAALVAMQRDEKRESLDIHETAGLSYKENVRQ 303
Query: 215 LLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
+N N + N E + S + E+I+N
Sbjct: 304 TYVWCCQNQRNWVQIECCNDEGERY-SREKVHEMIYN 339
>gi|450098394|ref|ZP_21857990.1| thymidylate kinase [Streptococcus mutans SF1]
gi|450171655|ref|ZP_21884109.1| thymidylate kinase [Streptococcus mutans SM4]
gi|449221591|gb|EMC21359.1| thymidylate kinase [Streptococcus mutans SF1]
gi|449243707|gb|EMC42116.1| thymidylate kinase [Streptococcus mutans SM4]
Length = 212
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 39/165 (23%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA------HDSLLRR 110
K I FEG DG GK+ TV + + LK +++ RE D +L
Sbjct: 3 KGIFISFEGPDGAGKT----TVLEAILPQLKKLVAKEVITTREPGGVAIAESIRDLILDV 58
Query: 111 AYYSLGN------YIAA------QDIKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSD 156
+ ++ + YIAA + I +L+K +V+ DRF S+ AY G L
Sbjct: 59 NHTNMDDKTELLLYIAARRQHLVERILPELKKGNLVLVDRFIDSSVAYQGYGRGL----- 113
Query: 157 LKLPDEDDDIYSW----PKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
D D +W D ++PDL +Y V I L R+ + K
Sbjct: 114 ------DADAVTWLNNFATDGLQPDLTLYFDVDSQIGLTRIEKNK 152
>gi|424825172|ref|ZP_18250159.1| thymidylate kinase [Chlamydophila abortus LLG]
gi|333410271|gb|EGK69258.1| thymidylate kinase [Chlamydophila abortus LLG]
Length = 211
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 91/218 (41%), Gaps = 33/218 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKST-----PPSSIMSLREK---FDAHDSLLRRA 111
IV EG +G GKS +Q + KL A K+ P S + R + D + L
Sbjct: 2 FIVIEGCEGSGKSSLTQLLKDKLMAEGKAVVATREPGGSSLGERVRDWILDPSTTEL-SP 60
Query: 112 YYSLGNYIA--AQDIKQDL-----QKQPVVMDRFWHSTSAY-----GMANELVKNSDLKL 159
Y L ++A AQ I + + + VV DRF ST Y G+ E V N
Sbjct: 61 YTELFLFLAARAQHITEKILPALELGKIVVCDRFHDSTIVYQGIVGGLGKEYVTNL---- 116
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKKNAKFRELLTT 218
+ K L P+L L + L+R ++K+F EN+ L + K RE +
Sbjct: 117 ---CHSVVGQKKIL--PNLTCLLDIPADEGLKRKQQQKSFDKFENQSLAYHTKIREGFLS 171
Query: 219 IYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPMFK 256
+ + P+ V ++ + + ES N ++ L + K
Sbjct: 172 LTE--SRPDSYLVLDARQPIEESLNKVMTAYTELALCK 207
>gi|296126817|ref|YP_003634069.1| thymidylate kinase [Brachyspira murdochii DSM 12563]
gi|296018633|gb|ADG71870.1| thymidylate kinase [Brachyspira murdochii DSM 12563]
Length = 203
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 34/159 (21%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYS----- 114
LIV EG+DG GKS T L L + SI + S LR + S
Sbjct: 5 LIVIEGIDGSGKS----THGMLLTNELNNIGIKSIYTFEPTHAYFGSKLRESMLSKDLKP 60
Query: 115 ---LGNYIAAQDIKQDLQKQ---------PVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
L +IA D K+ +Q V++DR+ +S+ AY A + +
Sbjct: 61 EEELSLFIA--DRKEHVQNMIKPAINDGYAVILDRYMYSSIAYQGAKGI----------D 108
Query: 163 DDDIYSWPKD-LMKPDLVIYLTVSEAIRLQRLSRRKNFT 200
+ IY+ KD +++PDLV + L R+ ++ F
Sbjct: 109 REYIYNLHKDFIIEPDLVFIFHLPIETALNRIMEKRGFV 147
>gi|387772595|ref|ZP_10128488.1| dTMP kinase [Haemophilus parahaemolyticus HK385]
gi|386906161|gb|EIJ70904.1| dTMP kinase [Haemophilus parahaemolyticus HK385]
Length = 210
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 25/209 (11%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA-SLK---------STPPSSIMSLREKFDAHDSLLR 109
IV EGL+G GKS Q V KL+ +K TP + + K D + +
Sbjct: 6 FIVLEGLEGAGKSTAHQAVLAKLEELGIKDVVLTREPGGTPLAEKLRYLIKHDLEEPITD 65
Query: 110 RAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED-DDIYS 168
+A L Y A + +++ K P + + W + M+++ + K+ + D++
Sbjct: 66 KAEL-LMLYAARVQLVENVIK-PALAEGKWVLGDRHDMSSQAYQGGGRKIDRKILDNLKR 123
Query: 169 WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENEL----KKNAKFRELLTTIYRNM 223
+PDL IYL + + L+R+ R +E+ L + + ++ EL
Sbjct: 124 TVLGDFEPDLTIYLDIDPVVGLERVRGRGELDRIEQQSLDFFYRTHQRYLEL------TQ 177
Query: 224 NNPELVFVDNSEKSVHESSNDIVELIHNL 252
NN + V +D +E+ + + + DI + + N
Sbjct: 178 NNDKAVIID-AEQPLEKVTADIKQAVENF 205
>gi|253996507|ref|YP_003048571.1| thymidylate kinase [Methylotenera mobilis JLW8]
gi|253983186|gb|ACT48044.1| thymidylate kinase [Methylotenera mobilis JLW8]
Length = 201
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 34/212 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA------SLKSTPPSSIMSLREKFDAHDSL------ 107
I EG+DG GKS + K L A S + + + + HD++
Sbjct: 5 FITLEGMDGAGKSTHIADIIKALSARGVEVVSTREPGGTELGERLRELLLHDAMHPETET 64
Query: 108 -----LRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
RR + + N IA + V+ DRF +T AY + V S +
Sbjct: 65 LLMFAARREH--IANVIAPALARGAY----VLSDRFTDATYAYQCGAKGVLASKI----- 113
Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY-- 220
+ + W ++ ++PDL + V + +QRLS + E E +A F + Y
Sbjct: 114 -EQLELWVQESLQPDLTLLFDVPVEVSMQRLSAARAPDKFERE---SADFFTRIRNAYLQ 169
Query: 221 RNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
R NP V +S + + E + +++ I +
Sbjct: 170 RAQQNPARFKVIDSNRPLDEVAQSVMQAIASF 201
>gi|149182702|ref|ZP_01861169.1| Deoxyguanosine kinase [Bacillus sp. SG-1]
gi|148849612|gb|EDL63795.1| Deoxyguanosine kinase [Bacillus sp. SG-1]
Length = 213
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 24/208 (11%)
Query: 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHD--SLLRRAYYSLG 116
P I EG G GK+ ++ ++ L L + +D D S ++
Sbjct: 5 PFITVEGPIGVGKTSLAKAISDHFNYHLLKEIVDENPFLDKFYDNIDEWSFQTEMFFLCN 64
Query: 117 NYIAAQDIKQDL--QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS-WPKDL 173
Y +DI+ Q +PVV D +H A +KN D+ +IY +D+
Sbjct: 65 RYKQLEDIETHFISQNKPVVAD--YHILKNLIFAERTLKNKQF---DKYLNIYQILTEDM 119
Query: 174 MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY-RNM--------N 224
P+++IYL S LQR++ R E E K + + E L+ Y R+M N
Sbjct: 120 PVPNVIIYLNASLDTLLQRIAMRG----REFEKKISPLYLEQLSMDYERHMQQFENKYPN 175
Query: 225 NPELVFVDNSEKSVHESSNDIVELIHNL 252
P L F + E ++ ND+ +I +L
Sbjct: 176 TPVLRF-NGDEMDFVKNQNDLSAIIDSL 202
>gi|357637393|ref|ZP_09135268.1| dTMP kinase [Streptococcus macacae NCTC 11558]
gi|357585847|gb|EHJ53050.1| dTMP kinase [Streptococcus macacae NCTC 11558]
Length = 221
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 73/175 (41%), Gaps = 43/175 (24%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA------HDSLLRRAYY 113
L+ EG DG GK+ TV +K+ LK S +++ RE D +L +
Sbjct: 13 LLSLEGPDGAGKT----TVLEKILPQLKRFVSSKVVATREPGGVAIAERIRDIILDVEHT 68
Query: 114 SLGN------YIAAQDIKQDL---------QKQPVVMDRFWHSTSAY-GMANELVKNSDL 157
++ + YIAA+ +Q L Q V++DRF S+ AY G L
Sbjct: 69 NMDDKTELLLYIAAR--RQHLVERILPEFDQGNFVIVDRFVDSSVAYQGYGRGL------ 120
Query: 158 KLPDEDDDIYSW----PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK 208
D SW D + PDL +YL V LQR+ + K + +L+K
Sbjct: 121 -----DRQAVSWLNTYVTDGLYPDLTLYLDVDSETGLQRIEQNKEREVNRLDLEK 170
>gi|291542136|emb|CBL15246.1| thymidylate kinase [Ruminococcus bromii L2-63]
Length = 224
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 37/167 (22%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLK----------STPPSSIMSL------REK 100
K +IV EGLDG GK+ ++ + +K+ A K +P ++ + + +K
Sbjct: 2 KSKIIVIEGLDGSGKATQTKILCEKISALGKKVTKLEFPNYESPAAAPVKMYLDGEFGDK 61
Query: 101 FDAHDSLLRRAYYSLGNYIAA--QDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDL 157
D ++ A+Y++ + +A+ Q K++ V++ DR+ S Y M+
Sbjct: 62 PDDVNAYAASAFYAV-DRVASYLQFWKKECDNGGVILSDRYVTSNIIYQMS--------- 111
Query: 158 KLPDED-DDIYSWPKD-------LMKPDLVIYLTVSEAIRLQRLSRR 196
KLP E+ + W D + KPDLVIYL V + + + +R
Sbjct: 112 KLPKEEWNSFIDWLNDFEYEKLGIPKPDLVIYLDVEPEVSQKLMEKR 158
>gi|385681289|ref|ZP_10055217.1| thymidylate kinase [Amycolatopsis sp. ATCC 39116]
Length = 215
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 31/162 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA---HDSLLRRA----- 111
L+V EGLDG GK + + K L ++ + A H+ L RR
Sbjct: 4 LVVIEGLDGAGKRTLTDGLTKALHDQGRTVTTLAFPRYGRSVHADLIHEGLHRRHGDLTD 63
Query: 112 -------YYSLGNYIAAQDIKQDLQKQPVV-MDRFWHSTSAYGMANELVKNSDLKLPDED 163
Y+L AA +I+ L VV +DR+ S +AYG A L +++ D
Sbjct: 64 SVYGMGLLYALDRREAAPEIRAGLDTHDVVLLDRYVASNAAYGAAR-LRQHA-------D 115
Query: 164 DDIYSWPKD-------LMKPDLVIYLTVSEAIRLQRLSRRKN 198
+ W ++ L PD I L V A+ +R +R +
Sbjct: 116 GEFVRWVREIEIDRFGLPLPDAQILLRVPPAVAAERAEQRAS 157
>gi|145638629|ref|ZP_01794238.1| thymidylate kinase [Haemophilus influenzae PittII]
gi|145272224|gb|EDK12132.1| thymidylate kinase [Haemophilus influenzae PittII]
gi|309750128|gb|ADO80112.1| Thymidylate kinase [Haemophilus influenzae R2866]
Length = 219
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 27/215 (12%)
Query: 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKL-KASLK---------STPPSSIMSLREKFDA 103
++ K IV EGL+G GKS Q+V + L + +K TP + + K++
Sbjct: 8 ENMKGKFIVIEGLEGAGKSSAHQSVVQVLHELGIKDVVFTREPGGTPLAEKLRHLIKYET 67
Query: 104 HDSLLRRA----YYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAY-GMANELVKNSDL 157
+ + +A Y+ + IK L Q + VV DR S+ AY G +L + L
Sbjct: 68 EEPVTAKAELLMLYAARIQLVENVIKPALMQGKWVVGDRHDMSSQAYQGGGRQLDPHFML 127
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENELKKNAKFRELL 216
L + + +PDL IYL + ++ L R R +E+ +L + R
Sbjct: 128 TLKETVLGNF-------EPDLTIYLDIDPSVGLARARGRGELDRIEQMDLDFFHRTRARY 180
Query: 217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
+ + +NP+ V + N+E+S+ DI + N
Sbjct: 181 LALVK--DNPKAVVI-NAEQSIELVQADIESAVKN 212
>gi|83319417|ref|YP_424009.1| thymidylate kinase [Mycoplasma capricolum subsp. capricolum ATCC
27343]
gi|123536025|sp|Q2STA4.1|KTHY_MYCCT RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|83283303|gb|ABC01235.1| thymidylate kinase [Mycoplasma capricolum subsp. capricolum ATCC
27343]
Length = 213
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 35/212 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMS--LREKFDAHDSLLRRAY 112
I FEG+DG GK+ V ++L K + P +++ +R+ + + A+
Sbjct: 2 FITFEGMDGSGKTTALLKVKEELERLNYKVLITREPGGEVIAEQIRQIILDNKNKDMDAW 61
Query: 113 YSLGNYIAAQD------IKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSDLKLPDEDD 164
+IA+++ IK L+K +V+ DRF STSAY G A +N + + E
Sbjct: 62 TEALLFIASRNQHLQKVIKPALEKNIIVISDRFIDSTSAYQGSA----RNIGVDVVSEVQ 117
Query: 165 DIYSWPKDLMKPDLVIYLTVS-----EAIRLQRLSRRKNFTLEENELKKNA--KFRELLT 217
I K+ + PDL ++ VS + ++++ S + EEN K+ + EL+
Sbjct: 118 QIV--LKNCL-PDLTLFFDVSFSEAEKRMQIRGESSKNRLDKEENNFKQKVYQGYLELVK 174
Query: 218 TIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
NNP+ + V ++ K + + N +++I
Sbjct: 175 ------NNPKRIKVIDANKDIDQVYNQAIKII 200
>gi|312137024|ref|YP_004004361.1| thymidylate kinase [Methanothermus fervidus DSM 2088]
gi|311224743|gb|ADP77599.1| thymidylate kinase [Methanothermus fervidus DSM 2088]
Length = 189
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 96/199 (48%), Gaps = 30/199 (15%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKAS------LKSTPPSSIMSLREKF---DAHDSLLRRA 111
I EG+DG GKS + +++KLK +K S I L K + +++L+
Sbjct: 3 ICIEGIDGAGKSLQVKLLSEKLKKCGYKVIQIKEPTDSEIGKLIRKLLRKEVNNALM-TL 61
Query: 112 YYSLGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
++ I ++ IK+ L+K +V+ DR S+ Y ++ D+ +D +
Sbjct: 62 LFAADRIILSEKIKKLLKKGYLVISDRCLWSSFVY-------QSIDIG----EDWVEEVN 110
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVF 230
K +KPD+ I+L V + ++R +++ F EN N R+ L + +N ++
Sbjct: 111 KYALKPDITIFLDVDVDVAMKRCEKKEIF---ENSSYLNKARRKYLQLAKK--HNFIIID 165
Query: 231 VDNSEKSVHESSNDIVELI 249
+N K+VH N+I+++I
Sbjct: 166 ANNDIKTVH---NEILKVI 181
>gi|217077269|ref|YP_002334987.1| tmk thymidylate kinase [Thermosipho africanus TCF52B]
gi|226732664|sp|B7IHT2.1|KTHY_THEAB RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|217037124|gb|ACJ75646.1| tmk thymidylate kinase [Thermosipho africanus TCF52B]
Length = 201
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 23/149 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKST-----PPSSIMS--LREK-FDAHDSLLRRA 111
I FEG+DG GKS +++ LK+ K P +I+ +RE D + ++ +R+
Sbjct: 2 FIAFEGIDGSGKSTQLNLLSQYLKSKGKKVLNIREPGGTILGEKIREILLDNNLNINKRS 61
Query: 112 ----YYSLGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSDLKLPD-EDD 164
+ + + + IK L++ V+ DRF S+ AY G A + + L D D
Sbjct: 62 ELLLFLASRAQLVEEVIKPHLKRGFFVLADRFSDSSIAYQGGARNIGVETVSTLNDFATD 121
Query: 165 DIYSWPKDLMKPDLVIYLTVSEAIRLQRL 193
+IY PD+V Y+ + I ++RL
Sbjct: 122 NIY--------PDIVFYIDIPTKIAMERL 142
>gi|195584457|ref|XP_002082023.1| GD25418 [Drosophila simulans]
gi|194194032|gb|EDX07608.1| GD25418 [Drosophila simulans]
Length = 211
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 24/140 (17%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPP-------SSIMSLREKF-----DA 103
++ LI+FEG D GK+ S+ + + LK+ T P SSI + + D
Sbjct: 5 KRGALIIFEGCDRSGKTTQSRLLVELLKSKGIPTLPMNFPERSSSIGQVINSYLTNSKDL 64
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQD-LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
D ++ +S + +KQ L+ +V+DR+ S AY A L +
Sbjct: 65 PDEVI-HLMFSANRWEHMNQVKQKLLEGTTLVVDRYSFSGVAYSAAKGL----------D 113
Query: 163 DDDIYSWPKDLMKPDLVIYL 182
D Y+ + L+KPD V YL
Sbjct: 114 FDWCYAPERGLIKPDAVFYL 133
>gi|116805978|emb|CAL26368.1| CG5757 [Drosophila simulans]
Length = 211
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 24/140 (17%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPP-------SSIMSLREKF-----DA 103
++ LI+FEG D GK+ S+ + + LK+ T P SSI + + D
Sbjct: 5 KRGALIIFEGCDRSGKTTQSRLLVELLKSKGIPTLPMNFPERSSSIGQVINSYLTNSKDL 64
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQD-LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
D ++ +S + +KQ L+ +V+DR+ S AY A L +
Sbjct: 65 PDEVI-HLMFSANRWEHMNQVKQKLLEGTTLVVDRYSFSGVAYSAAKGL----------D 113
Query: 163 DDDIYSWPKDLMKPDLVIYL 182
D Y+ + L+KPD V YL
Sbjct: 114 FDWCYAPERGLIKPDAVFYL 133
>gi|310830106|ref|YP_003962463.1| putative thymidylate kinase [Eubacterium limosum KIST612]
gi|308741840|gb|ADO39500.1| putative thymidylate kinase [Eubacterium limosum KIST612]
Length = 228
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 90/232 (38%), Gaps = 48/232 (20%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYS 114
+ K LIV EG+DG GK QT +KL LK + ++D S + R Y S
Sbjct: 2 ENKGQLIVIEGVDGSGK----QTQTEKLYDRLKREGQRVMKVSYPRYDKASSAMVRLYLS 57
Query: 115 --LGN-------YIAA--------QDIKQDLQ-----KQPVVMDRFWHSTSAYGMANELV 152
GN YIA+ K+D + V+ DR+ S M ++
Sbjct: 58 GAFGNDPDSISPYIASTFYAADRYASYKEDYETFYRDGGIVIADRYTTSN----MVHQAG 113
Query: 153 KNSDLKLPDEDDDIYSWPKD-------LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE 205
K SD P+E W D L PD V +L + I + + R N E E
Sbjct: 114 KISD---PEERVRFMDWLSDYEFNKMELPVPDAVFFLNIPPEINFKLMEGRANKITGEAE 170
Query: 206 LKKNAKFRELLTTIYRNM-------NNPELVFVDNSE-KSVHESSNDIVELI 249
+ K E L Y+N N E+V V + +S+ + +I E +
Sbjct: 171 KDIHEKSPEHLLHAYQNALELIEKYNWTEIVCVSEGKLRSIEDIHEEIYERV 222
>gi|390937964|ref|YP_006401702.1| thymidylate kinase [Desulfurococcus fermentans DSM 16532]
gi|390191071|gb|AFL66127.1| thymidylate kinase [Desulfurococcus fermentans DSM 16532]
Length = 206
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 94/206 (45%), Gaps = 32/206 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTV-----AKKLKASLKSTPPSS--IMSLREKF-DAHDSLLRRA 111
IV EGLDG GK+ ++ + ++ + AS P S + ++ + + D+ +
Sbjct: 7 FIVLEGLDGAGKTTIARRLVEDLSSRGIPASYTYEPTDSEIVRLIKSTYNNLRDAYIDAL 66
Query: 112 YYSLGNYIAAQDIKQDL--QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
++L I +++ + L + V+ DR+++S+ AY A+ P + W
Sbjct: 67 AFALDRLIHVKNLVKPLLDRGVTVISDRYFYSSVAYQSAS--------GAP------FEW 112
Query: 170 PKDL----MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNN 225
++ MKPD+ IYL + + LSR+ T E ++ + + + R +
Sbjct: 113 VIEVNKFAMKPDVAIYLDIEPE---EGLSRKYMHTSRFPEYEEKEFLQRVRSMYLRMVEM 169
Query: 226 PELVFVDNSEKSVHESSNDIVELIHN 251
L+++D S K + E + I ++++
Sbjct: 170 GLLIYIDAS-KPLSEVYDRIWDIVYG 194
>gi|340787009|ref|YP_004752474.1| thymidylate kinase [Collimonas fungivorans Ter331]
gi|340552276|gb|AEK61651.1| Thymidylate kinase [Collimonas fungivorans Ter331]
Length = 208
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 20/206 (9%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS----LKSTPPSSIM---SLREKF---DAHDSLLR 109
I FEG+DG GKS VA L+A + + P +LRE H
Sbjct: 4 FITFEGIDGAGKSTHIAFVADLLRAQGLQVITTREPGGTTLGEALREVLLHQKMHLETEA 63
Query: 110 RAYYSLGNYIAAQDIKQDLQKQP-VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168
++ AQ I+ L + V+ DRF +T AY + + L + +
Sbjct: 64 MLMFAARREHLAQVIEPALARGDWVISDRFTDATFAYQGGGRQLPLAKL------EALEQ 117
Query: 169 WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT-IYRNMNNPE 227
W ++PDL + V + RL + TL++ E +K F + R PE
Sbjct: 118 WVHPHLQPDLTLLFDVPLEVARTRLDATR--TLDKFEQEKADFFAATRAEYLRRAAQFPE 175
Query: 228 LVFVDNSEKSVHESSNDIVELIHNLP 253
V ++ +++ E ++ ++I +LP
Sbjct: 176 RFRVIDATRTIAEVQQELKQIISSLP 201
>gi|323491965|ref|ZP_08097134.1| thymidylate kinase [Vibrio brasiliensis LMG 20546]
gi|323313823|gb|EGA66918.1| thymidylate kinase [Vibrio brasiliensis LMG 20546]
Length = 209
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 26/203 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS----LKSTPPSSIMSLREKFDAHDSLLRRAYYS- 114
IV EGL+G GKS V + LK + ++ T +L EK +L+++ +
Sbjct: 6 FIVIEGLEGAGKSTAINAVLETLKQAGVERIQHTREPGGTALAEKL---RTLVKQEHEGE 62
Query: 115 --------LGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDI 166
L Y A + +++ K P + D W + M+++ + ++P E +
Sbjct: 63 ELQDMTELLLMYAARVQLVENVIK-PALADGRWVVGDRHDMSSQAYQGGGRQIPRE--TM 119
Query: 167 YSWPKDLM---KPDLVIYLTVSEAIRLQRLSRRKNF-TLEENELKKNAKFRELLTTIYRN 222
+ + + KPDL IYL + + L+R R +E+ ++ + RE I
Sbjct: 120 LALKQTTLGDFKPDLTIYLDLDPRVGLERARGRGELDRIEKMDMSFFDRTRERYLEIA-- 177
Query: 223 MNNPELVFVDNSEKSVHESSNDI 245
N + V V N+E+ + + + DI
Sbjct: 178 -NQDDSVIVINAEQEIPQVAADI 199
>gi|30995377|ref|NP_438617.2| thymidylate kinase [Haemophilus influenzae Rd KW20]
gi|260580481|ref|ZP_05848309.1| thymidylate kinase [Haemophilus influenzae RdAW]
gi|260092823|gb|EEW76758.1| thymidylate kinase [Haemophilus influenzae RdAW]
Length = 219
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 93/219 (42%), Gaps = 35/219 (15%)
Query: 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA----------SLKSTPPSSIMSLREKFDA 103
++ K IV EGL+G GKS Q+V + L TP + + K +
Sbjct: 8 ENMKGKFIVIEGLEGAGKSSAHQSVVRVLHELGIQDVVFTREPGGTPLAEKLRHLIKHET 67
Query: 104 HDSLLRRA----YYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAY-GMANELVKNSDL 157
+ + +A Y+ + IK L Q + VV DR S+ AY G +L + L
Sbjct: 68 EEPVTDKAELLMLYAARIQLVENVIKPALMQGKWVVGDRHDMSSQAYQGGGRQLDPHFML 127
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENEL----KKNAKF 212
L + + +PDL IYL + ++ L R R +E+ +L + A++
Sbjct: 128 TLKETVLGNF-------EPDLTIYLDIDPSVGLARARGRGELDRIEQMDLDFFHRTRARY 180
Query: 213 RELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
EL+ +NP+ V + N+E+S+ DI + N
Sbjct: 181 LELVK------DNPKAVVI-NAEQSIELVQADIESAVKN 212
>gi|424033450|ref|ZP_17772864.1| thymidylate kinase [Vibrio cholerae HENC-01]
gi|424037021|ref|ZP_17775913.1| thymidylate kinase [Vibrio cholerae HENC-02]
gi|408874699|gb|EKM13867.1| thymidylate kinase [Vibrio cholerae HENC-01]
gi|408895995|gb|EKM32213.1| thymidylate kinase [Vibrio cholerae HENC-02]
Length = 209
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 30/208 (14%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDAH 104
K IV EGL+G GKS +TV LKA+ TP + M ++E+ +
Sbjct: 2 KANFIVVEGLEGAGKSTAIKTVLDTLKAAGIENIVNTREPGGTPLAEKMRALVKEEHEGE 61
Query: 105 DSLLRRAYYSLGNYIAAQDIKQDLQK------QPVVMDRFWHSTSAYGMANELVKNSDLK 158
D L+ L Y A + +++ K Q VV DR S+ AY + S +K
Sbjct: 62 D--LKDMTELLLLYAARVQLVENVIKPALANNQWVVGDRHDLSSQAYQGGGRQIDASLMK 119
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT 218
++ KP +Y+ + + L+R R E K + F E
Sbjct: 120 ------NLRDTTLGEFKPAFTLYMDIDPRVGLERARGRGELDRIE---KMDISFFERTRE 170
Query: 219 IYRNMNNP-ELVFVDNSEKSVHESSNDI 245
Y + N + + V N+E+S+ E ++DI
Sbjct: 171 RYLELANADDSIVVINAEQSIDEVAHDI 198
>gi|170726335|ref|YP_001760361.1| thymidylate kinase [Shewanella woodyi ATCC 51908]
gi|169811682|gb|ACA86266.1| dTMP kinase [Shewanella woodyi ATCC 51908]
Length = 210
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 85/212 (40%), Gaps = 35/212 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS-----------IMSLREKFDAHDSLL 108
IV EGL+G GKS V ++ + P + I L + D D L
Sbjct: 9 FIVIEGLEGAGKSSAISLVRDFIEKHTGAVPVCTREPGGTPLAERIRDLVKIADETDPLC 68
Query: 109 RRA----YYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAY-----GMANELVKNSDLK 158
A +Y+ + A IK L++ + V+ DR S+ AY G++ + S
Sbjct: 69 DEAECLLFYAARAQLVANVIKPALRRGEWVLGDRHNLSSLAYQGGGRGLSTLVESVSRAT 128
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT 218
L D KPDL IYL + + L R + R L+ E+++ A F T
Sbjct: 129 LGD------------FKPDLTIYLDIEPKLGLTRAANRGE--LDRIEVEEIAFFERARHT 174
Query: 219 IYRNMNNPELVFVDNSEKSVHESSNDIVELIH 250
+ + V ++ +++ E DIV L+
Sbjct: 175 FLSYAQQDDSIQVIDAGQTMAEVHKDIVALLQ 206
>gi|386389455|ref|ZP_10074270.1| dTMP kinase [Haemophilus paraphrohaemolyticus HK411]
gi|385695550|gb|EIG26108.1| dTMP kinase [Haemophilus paraphrohaemolyticus HK411]
Length = 210
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 90/213 (42%), Gaps = 33/213 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK------ASLKSTPPSSIMS--LRE--KFDAHDSLLR 109
IV EGL+G GKS Q + +L L P + ++ LR K D + +
Sbjct: 6 FIVLEGLEGAGKSTAHQAILAQLSELGINDVVLTREPGGTPLAEKLRHLIKHDLEEPICD 65
Query: 110 RA----YYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD 164
+A Y+ + IK L + + V+ DR S+ AY + L D
Sbjct: 66 KAELLMLYAARVQLVENVIKPALAEGKWVLGDRHDMSSQAYQGGGRQIDRKIL------D 119
Query: 165 DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENEL----KKNAKFRELLTTI 219
++ +PDL IYL + A+ L+R+ R +E+ L + + ++ EL
Sbjct: 120 NLKRTVLGDFEPDLTIYLDIDPAVGLERVRGRGELDRIEQQSLDFFYRTHQRYLEL---- 175
Query: 220 YRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
NN + V +D +E+ + + + DI + + N
Sbjct: 176 --TQNNDKAVIID-AEQPLEKVTADIKQAVENF 205
>gi|394988098|ref|ZP_10380936.1| hypothetical protein SCD_00500 [Sulfuricella denitrificans skB26]
gi|393792556|dbj|GAB70575.1| hypothetical protein SCD_00500 [Sulfuricella denitrificans skB26]
Length = 213
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 21/150 (14%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
KY +V G G GK+ +Q ++++ +++L + E DA + L R Y
Sbjct: 5 KYHYVVIAGPIGVGKTSLAQLLSERFQSAL----------MLENADA-NPFLPRFYQDAE 53
Query: 117 NYIAAQDIKQDLQKQPVV-----MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK 171
Y + LQ+ V M F + A M ++ + + L L +E+ +Y
Sbjct: 54 RYALPTQLSFLLQRASQVQELKRMGAFGGAAVADFMLDKDLLFAKLNLSEEEYHLYRQIY 113
Query: 172 DLM-----KPDLVIYLTVSEAIRLQRLSRR 196
D + +PDLVIYL V + +R+ RR
Sbjct: 114 DNLQLQTPRPDLVIYLQVPPEVLAERVRRR 143
>gi|148825264|ref|YP_001290017.1| thymidylate kinase [Haemophilus influenzae PittEE]
gi|229846542|ref|ZP_04466650.1| thymidylate kinase [Haemophilus influenzae 7P49H1]
gi|254808295|sp|A5UA33.1|KTHY_HAEIE RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|148715424|gb|ABQ97634.1| thymidylate kinase [Haemophilus influenzae PittEE]
gi|229810635|gb|EEP46353.1| thymidylate kinase [Haemophilus influenzae 7P49H1]
Length = 210
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 35/216 (16%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKA----------SLKSTPPSSIMSLREKFDAHDS 106
K IV EGL+G GKS Q+V + L TP + + K + +
Sbjct: 2 KGKFIVIEGLEGAGKSSAHQSVVRVLHELAIQDVVFTREPGGTPLAEKLRHLIKHETEEP 61
Query: 107 LLRRA----YYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAY-GMANELVKNSDLKLP 160
+ +A Y+ + IK L Q + VV DR S+ AY G +L + L L
Sbjct: 62 VTHKAELLMLYAARIQLVDNVIKPALMQGKWVVGDRHDMSSQAYQGGGRQLDPHFMLTLK 121
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENEL----KKNAKFREL 215
+ + +PDL IYL + + L R R +E+ +L + A++ EL
Sbjct: 122 ETVLGDF-------EPDLTIYLDIDPIVGLARARGRGELDRIEQMDLDFFHRTRARYLEL 174
Query: 216 LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
+ +NP+ V + N+E+S+ DI + N
Sbjct: 175 VK------DNPKAVMI-NAEQSIELVQADIERAVKN 203
>gi|310799971|gb|EFQ34864.1| thymidylate kinase [Glomerella graminicola M1.001]
Length = 271
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 33/152 (21%)
Query: 60 LIVFEGLDGCGKSHTSQT---------VAKKLKASL---KSTPPSSIMS--LREKFDAHD 105
I FEGLD GK T+Q + KK+K ++TP ++ L+ + D
Sbjct: 42 FIAFEGLDRSGK--TTQVKLLEQRFVELGKKVKVMRFPDRTTPIGQMIDAYLKSSVEMED 99
Query: 106 SLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD 164
++ +S + A ++I+ L V+ DR++HS Y A + N L L
Sbjct: 100 HVIH-LLFSANRWEAVKNIQTLLASGTTVICDRYYHSGIVYSAAKQ---NPHLTL----- 150
Query: 165 DIYSWPK----DLMKPDLVIYLTVSEAIRLQR 192
W + L +PDLV++L + EAI +R
Sbjct: 151 ---HWARQPELGLPRPDLVLFLDLEEAIARER 179
>gi|281490597|ref|YP_003352577.1| thymidylate kinase [Lactococcus lactis subsp. lactis KF147]
gi|161702099|gb|ABX75570.1| Thymidylate kinase [Lactococcus lactis subsp. lactis KF147]
Length = 199
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 25/178 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTV-----AKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYS 114
LIVFEGLDG GK+ + KKL+ P + + D D+ + YS
Sbjct: 5 LIVFEGLDGSGKTTQIDMLHQWFENKKLEVFTTKQPTDYYRNDKRVRDYLDNGIAPNMYS 64
Query: 115 LG-------NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
+ Y + +I + + ++ DR+ +S+ A+ A + D K +I
Sbjct: 65 IALLAAADRTYQISSEIFPKISESNIICDRYLYSSLAFFKA----RGIDYK------EIL 114
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL---EENELKKNAKFRELLTTIYRN 222
K + PD+ ++L V L+R+ +R + E+NEL N + L + +N
Sbjct: 115 MINKGVPIPDVTVFLDVPPERALERVRQRDGEDIKYEEKNELVFNQVRQNFLDVLPKN 172
>gi|323347864|gb|EGA82125.1| Cdc8p [Saccharomyces cerevisiae Lalvin QA23]
Length = 168
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK--STPPSS--IMSLREKFDAHDSL-----LRR 110
LI+ EGLD GK+ + KKL+ + K P S I L ++ DS
Sbjct: 6 LILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIH 65
Query: 111 AYYSLGNYIAAQDIKQD-LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
+S + IK+D L+ + +VMDR+ +S AY A DL + D
Sbjct: 66 LLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKG-TNGMDLDWCLQPD----- 119
Query: 170 PKDLMKPDLVIYLTVSEA 187
L+KPDL ++L+ +
Sbjct: 120 -VGLLKPDLTLFLSTQDV 136
>gi|326469002|gb|EGD93011.1| thymidylate kinase [Trichophyton tonsurans CBS 112818]
Length = 182
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 25/152 (16%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTV----------AKKLKASLKSTPPSSIMS--LREKFDA 103
R+ L+V EGLD GKS + K ++ ++T +++ LR +
Sbjct: 11 RRGALVVVEGLDRAGKSTQCARLHQFLVNQGHETKYIRFPDRTTAIGKMINQYLRGEIQL 70
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
D + +S + AA I++D++ V++DR+ +S + Y A E N +L+L
Sbjct: 71 DDHAV-HLLFSANRWEAAAQIRRDIESGITVIVDRYSYSGAVYSAAKE---NKELQLD-- 124
Query: 163 DDDIYSWPKD--LMKPDLVIYLTVSEAIRLQR 192
++W + L +PD+ +L +S + R
Sbjct: 125 ----WAWRPEVGLPRPDIWFFLNISTEVAAAR 152
>gi|386265151|ref|YP_005828643.1| thymidylate kinase [Haemophilus influenzae R2846]
gi|309972387|gb|ADO95588.1| Thymidylate kinase [Haemophilus influenzae R2846]
Length = 219
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 35/219 (15%)
Query: 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA----------SLKSTPPSSIMSLREKFDA 103
++ K IV EGL+G GKS Q+V + L TP + + K +
Sbjct: 8 ENMKGKFIVIEGLEGAGKSSAHQSVVRVLHELAIQDVVFTREPGGTPLAEKLRHLIKHET 67
Query: 104 HDSLLRRA----YYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAY-GMANELVKNSDL 157
+ + +A Y+ + IK L Q + VV DR S+ AY G +L + L
Sbjct: 68 EEPVTHKAELLMLYAARIQLVDNVIKPALMQGKWVVGDRHDMSSQAYQGGGRQLDPHFML 127
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENEL----KKNAKF 212
L + + +PDL IYL + + L R R +E+ +L + A++
Sbjct: 128 TLKETVLGDF-------EPDLTIYLDIDPIVGLARARGRGELDRIEQMDLDFFHRTRARY 180
Query: 213 RELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
EL+ +NP+ V + N+E+S+ DI + N
Sbjct: 181 LELVK------DNPKAVMI-NAEQSIELVQADIERAVKN 212
>gi|1730073|sp|P44719.2|KTHY_HAEIN RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|1573430|gb|AAC22114.1| thymidylate kinase [Haemophilus influenzae Rd KW20]
Length = 210
Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKA----------SLKSTPPSSIMSLREKFDAHDS 106
K IV EGL+G GKS Q+V + L TP + + K + +
Sbjct: 2 KGKFIVIEGLEGAGKSSAHQSVVRVLHELGIQDVVFTREPGGTPLAEKLRHLIKHETEEP 61
Query: 107 LLRRA----YYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAY-GMANELVKNSDLKLP 160
+ +A Y+ + IK L Q + VV DR S+ AY G +L + L L
Sbjct: 62 VTDKAELLMLYAARIQLVENVIKPALMQGKWVVGDRHDMSSQAYQGGGRQLDPHFMLTLK 121
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENEL----KKNAKFREL 215
+ + +PDL IYL + ++ L R R +E+ +L + A++ EL
Sbjct: 122 ETVLGNF-------EPDLTIYLDIDPSVGLARARGRGELDRIEQMDLDFFHRTRARYLEL 174
Query: 216 LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
+ +NP+ V + N+E+S+ DI + N
Sbjct: 175 VK------DNPKAVVI-NAEQSIELVQADIESAVKN 203
>gi|260899207|ref|ZP_05907602.1| dTMP kinase [Vibrio parahaemolyticus AQ4037]
gi|308108494|gb|EFO46034.1| dTMP kinase [Vibrio parahaemolyticus AQ4037]
Length = 209
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 83/207 (40%), Gaps = 28/207 (13%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLK-ASLK---------STPPSSIMSLREKFDAHDS 106
K IV EGL+G GKS +TV LK A ++ TP + M K +
Sbjct: 2 KANFIVVEGLEGAGKSTAIKTVLDTLKQAGIENIVNTREPGGTPLAEKMRALVKEEHEGE 61
Query: 107 LLRRAYYSLGNYIAAQDIKQDLQK------QPVVMDRFWHSTSAYGMANELVKNSDLKLP 160
L+ L Y A + +++ K Q VV DR S+ AY + S +K
Sbjct: 62 ELKDMTELLLLYAARVQLVENVIKPALANGQWVVGDRHDLSSQAYQGGGRQINASLMK-- 119
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY 220
++ KP +Y+ + I L+R R E K + F E Y
Sbjct: 120 ----NLRDTTLGDFKPAFTLYMDIDPRIGLERARGRGELDRIE---KMDISFFERTRERY 172
Query: 221 RNMNN--PELVFVDNSEKSVHESSNDI 245
+ N P +V + N+E+S+ E S DI
Sbjct: 173 LEIANADPSIVVI-NAEQSIEEVSRDI 198
>gi|350416175|ref|XP_003490864.1| PREDICTED: thymidylate kinase-like [Bombus impatiens]
Length = 215
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 40/218 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDAHDSL 107
L+V EG D GKS ++ + LK ++T I++ L +K +
Sbjct: 8 LVVLEGCDRAGKSTQAKLLVHALKQRDIPVEQRAFPDRTTATGEIINNYLSKKLNFS--- 64
Query: 108 LRRAY--YSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD 164
L A+ +S + +I + L VV+DR+ S +AY A K PD
Sbjct: 65 LETAHMLFSANRWECKDEILRSLYSGTTVVIDRYAGSGAAYTAATTGRCLDWCKAPD--- 121
Query: 165 DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKN--AKFRELLTTIYRN 222
K L PD+VI+L VS+ + R S + E NE++ + + +R+++ +
Sbjct: 122 ------KGLPSPDVVIFLNVSKETQCSR-SNWGDERYENNEIQSHVASNYRKIMDQTWYI 174
Query: 223 MNNPELVFVDNSEKSVH----ESSNDIVELIHNLPMFK 256
+N D+ + +H + D+++ + +LP+ K
Sbjct: 175 IN------ADDDKSKIHSQILQKILDVIDQVKDLPVSK 206
>gi|389629288|ref|XP_003712297.1| thymidylate kinase [Magnaporthe oryzae 70-15]
gi|351644629|gb|EHA52490.1| thymidylate kinase [Magnaporthe oryzae 70-15]
gi|440470173|gb|ELQ39259.1| thymidylate kinase [Magnaporthe oryzae Y34]
gi|440485569|gb|ELQ65514.1| thymidylate kinase [Magnaporthe oryzae P131]
Length = 240
Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 29/144 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKK----------LKASLKSTPPSSIMS--LREKFDAHDSL 107
LIV EGLD GK+ Q + K+ ++ ++TP ++ L+ + D D +
Sbjct: 15 LIVLEGLDRSGKTTQVQLLEKRFLDLGRNVKVMRFPDRTTPIGQMIDGYLKSQVDMDDHV 74
Query: 108 LRRAYYSLGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLPDEDDDI 166
+ +S + AA+ I L V+ DR+++S Y A + N L L
Sbjct: 75 I-HLLFSANRWEAAKQITDLLSAGTTVLCDRYYYSGMVYSAAKQ---NPALPL------- 123
Query: 167 YSWPK----DLMKPDLVIYLTVSE 186
SW + L +PDLV++L ++E
Sbjct: 124 -SWARAPEVGLPRPDLVLFLDLTE 146
>gi|28898823|ref|NP_798428.1| thymidylate kinase [Vibrio parahaemolyticus RIMD 2210633]
gi|260879164|ref|ZP_05891519.1| dTMP kinase [Vibrio parahaemolyticus AN-5034]
gi|31340183|sp|Q87N26.1|KTHY_VIBPA RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|28807042|dbj|BAC60312.1| thymidylate kinase [Vibrio parahaemolyticus RIMD 2210633]
gi|308093561|gb|EFO43256.1| dTMP kinase [Vibrio parahaemolyticus AN-5034]
Length = 210
Score = 37.0 bits (84), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 84/213 (39%), Gaps = 40/213 (18%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLK-ASLK---------STPPSSIMSLREKFDAHDS 106
K IV EGL+G GKS +TV LK A ++ TP + M K +
Sbjct: 3 KANFIVVEGLEGAGKSTAIKTVLDTLKQAGIENIVNTREPGGTPLAEKMRALVKEEHEGE 62
Query: 107 LLRRAYYSLGNYIAAQDIKQDLQK------QPVVMDRFWHSTSAYGMANE-----LVKN- 154
L+ L Y A + +++ K Q VV DR S+ AY L+KN
Sbjct: 63 ELKDMTELLLLYAARVQLVENVIKPALANGQWVVGDRHDLSSQAYQGGGRQIDASLMKNL 122
Query: 155 SDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214
D L D KP +Y+ + I L+R R E K + F E
Sbjct: 123 RDTTLGD------------FKPAFTLYMDIDPRIGLERARGRGELDRIE---KMDISFFE 167
Query: 215 LLTTIYRNMNN--PELVFVDNSEKSVHESSNDI 245
Y + N P +V + N+E+S+ E S DI
Sbjct: 168 RTRERYLEIANADPSIVVI-NAEQSIEEVSRDI 199
>gi|153838848|ref|ZP_01991515.1| thymidylate kinase [Vibrio parahaemolyticus AQ3810]
gi|308095583|ref|ZP_05906946.2| dTMP kinase [Vibrio parahaemolyticus Peru-466]
gi|308125924|ref|ZP_05778121.2| dTMP kinase [Vibrio parahaemolyticus K5030]
gi|149747732|gb|EDM58632.1| thymidylate kinase [Vibrio parahaemolyticus AQ3810]
gi|308089015|gb|EFO38710.1| dTMP kinase [Vibrio parahaemolyticus Peru-466]
gi|308114687|gb|EFO52227.1| dTMP kinase [Vibrio parahaemolyticus K5030]
Length = 209
Score = 37.0 bits (84), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 84/213 (39%), Gaps = 40/213 (18%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLK-ASLK---------STPPSSIMSLREKFDAHDS 106
K IV EGL+G GKS +TV LK A ++ TP + M K +
Sbjct: 2 KANFIVVEGLEGAGKSTAIKTVLDTLKQAGIENIVNTREPGGTPLAEKMRALVKEEHEGE 61
Query: 107 LLRRAYYSLGNYIAAQDIKQDLQK------QPVVMDRFWHSTSAYGMANE-----LVKN- 154
L+ L Y A + +++ K Q VV DR S+ AY L+KN
Sbjct: 62 ELKDMTELLLLYAARVQLVENVIKPALANGQWVVGDRHDLSSQAYQGGGRQIDASLMKNL 121
Query: 155 SDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214
D L D KP +Y+ + I L+R R E K + F E
Sbjct: 122 RDTTLGD------------FKPAFTLYMDIDPRIGLERARGRGELDRIE---KMDISFFE 166
Query: 215 LLTTIYRNMNN--PELVFVDNSEKSVHESSNDI 245
Y + N P +V + N+E+S+ E S DI
Sbjct: 167 RTRERYLEIANADPSIVVI-NAEQSIEEVSRDI 198
>gi|50365491|ref|YP_053916.1| thymidylate kinase [Mesoplasma florum L1]
gi|59798247|sp|Q6F0E1.1|KTHY_MESFL RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
gi|50364047|gb|AAT76032.1| thymidylate kinase [Mesoplasma florum L1]
Length = 211
Score = 37.0 bits (84), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 34/211 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMS--LREKFDAHDSLLRRAY 112
I EG+DG GK+ Q V + L K + P +S +RE D + +
Sbjct: 2 FITIEGMDGSGKTTALQRVKQYLEDLNYKVVMTREPGGLPLSEKIRELILNKDGVGMEPW 61
Query: 113 YSLGNYIAAQD------IKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSDLKLPDEDD 164
+IAA+ IK L+K +V+ DRF ST+AY G A L D
Sbjct: 62 TEALLFIAARKEHLEKVIKPYLKKGYIVISDRFMDSTTAYQGGARGLGV----------D 111
Query: 165 DIYSWPKDLMK---PDLVIYLTVSEAIRLQRLSRRKNFTLEENEL-KKNAKFRELLTTIY 220
+ K++++ PDL +Y +S +RLS R E+N L ++ KF+E + +
Sbjct: 112 YLNELQKNILEGFLPDLTLYFELSFEDAEKRLSARPE---EKNRLDEEGRKFKEAVKLAF 168
Query: 221 RNM--NNPELVFVDNSEKSVHESSNDIVELI 249
+ P + V ++ KS E + ++I
Sbjct: 169 EELVVKEPNRITVIDASKSPEEVFEETKKVI 199
>gi|218883455|ref|YP_002427837.1| thymidylate kinase [Desulfurococcus kamchatkensis 1221n]
gi|218765071|gb|ACL10470.1| thymidylate kinase [Desulfurococcus kamchatkensis 1221n]
Length = 206
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 93/202 (46%), Gaps = 24/202 (11%)
Query: 60 LIVFEGLDGCGKSHTSQTV-----AKKLKASLKSTPPSS--IMSLREKF-DAHDSLLRRA 111
IV EGLDG GK+ ++ + ++ + AS P S + ++ + + D+ +
Sbjct: 7 FIVLEGLDGAGKTTVARRLVEDLSSRGIPASYTYEPTDSEIVRVIKSTYNNLRDAYIDAL 66
Query: 112 YYSLGNYIAAQD-IKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
++L I ++ +K L K V+ DR+++S+ AY A+ + + E +
Sbjct: 67 AFALDRLIHVKNWVKPLLDKGVTVISDRYFYSSVAYQSAS----GAPFEWVIEVN----- 117
Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELV 229
K MKPD+ IYL + + LSR+ T E ++ + + + R + L+
Sbjct: 118 -KFAMKPDVAIYLDIEPE---EGLSRKHMHTSRFPEYEEKEFLQRVRSMYLRMVEMGLLI 173
Query: 230 FVDNSEKSVHESSNDIVELIHN 251
++D S K + E I ++++
Sbjct: 174 YIDAS-KPLSEVYGRIWDIVYG 194
>gi|341581851|ref|YP_004762343.1| thymidylate kinase [Thermococcus sp. 4557]
gi|340809509|gb|AEK72666.1| thymidylate kinase [Thermococcus sp. 4557]
Length = 207
Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 93/226 (41%), Gaps = 50/226 (22%)
Query: 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGN- 117
IV EG+DG GKS T AK L + +++ A L+R+ + G
Sbjct: 3 AFIVIEGIDGAGKS----TQAKLLAEWFEEKGHEVVLTKEPTDTAFGKLIRKLVLTGGKE 58
Query: 118 --------------YIAAQDIKQDLQK---------QPVVMDRFWHSTSAYGMANELVKN 154
+ A D + + K + V+ DR+++S+ AY A L
Sbjct: 59 GIIDGARISHEAEALLFAADRAEHVSKLIKPSVEAGKIVISDRYFYSSLAYQWARGL--- 115
Query: 155 SDLKLPDEDDDIYSWPKDL----MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNA 210
DL+ W DL ++PDLVI L + ++R++ R T + ++
Sbjct: 116 -DLE----------WLIDLNRFAVRPDLVILLDLPVKESMKRINGRSIKTEFDKIVELQK 164
Query: 211 KFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPMFK 256
K RE + PE+ V N+ SV + NDIV L+ + +FK
Sbjct: 165 KVRENYLKLAERF--PEMRIV-NALASVEDIHNDIVALVEH-ELFK 206
>gi|329942859|ref|ZP_08291638.1| thymidylate kinase [Chlamydophila psittaci Cal10]
gi|332287452|ref|YP_004422353.1| thymidylate kinase [Chlamydophila psittaci 6BC]
gi|384450606|ref|YP_005663206.1| thymidylate kinase [Chlamydophila psittaci 6BC]
gi|384451606|ref|YP_005664204.1| thymidylate kinase [Chlamydophila psittaci 01DC11]
gi|384452579|ref|YP_005665176.1| thymidylate kinase [Chlamydophila psittaci 08DC60]
gi|384453555|ref|YP_005666151.1| thymidylate kinase [Chlamydophila psittaci C19/98]
gi|384454534|ref|YP_005667129.1| thymidylate kinase [Chlamydophila psittaci 02DC15]
gi|392376688|ref|YP_004064466.1| thymidylate kinase [Chlamydophila psittaci RD1]
gi|406593458|ref|YP_006740637.1| thymidylate kinase [Chlamydia psittaci NJ1]
gi|407455350|ref|YP_006734241.1| thymidylate kinase [Chlamydia psittaci GR9]
gi|407458085|ref|YP_006736390.1| thymidylate kinase [Chlamydia psittaci WS/RT/E30]
gi|407459327|ref|YP_006737430.1| thymidylate kinase [Chlamydia psittaci M56]
gi|449071161|ref|YP_007438241.1| thymidylate kinase [Chlamydophila psittaci Mat116]
gi|313848031|emb|CBY17029.1| thymidylate kinase [Chlamydophila psittaci RD1]
gi|325507234|gb|ADZ18872.1| thymidylate kinase [Chlamydophila psittaci 6BC]
gi|328815119|gb|EGF85108.1| thymidylate kinase [Chlamydophila psittaci Cal10]
gi|328914700|gb|AEB55533.1| thymidylate kinase [Chlamydophila psittaci 6BC]
gi|334692336|gb|AEG85555.1| thymidylate kinase [Chlamydophila psittaci C19/98]
gi|334693316|gb|AEG86534.1| thymidylate kinase [Chlamydophila psittaci 01DC11]
gi|334694291|gb|AEG87508.1| thymidylate kinase [Chlamydophila psittaci 02DC15]
gi|334695268|gb|AEG88484.1| thymidylate kinase [Chlamydophila psittaci 08DC60]
gi|405781893|gb|AFS20642.1| thymidylate kinase [Chlamydia psittaci GR9]
gi|405785326|gb|AFS24072.1| thymidylate kinase [Chlamydia psittaci WS/RT/E30]
gi|405786253|gb|AFS24998.1| thymidylate kinase [Chlamydia psittaci M56]
gi|405789330|gb|AFS28072.1| thymidylate kinase [Chlamydia psittaci NJ1]
gi|449039669|gb|AGE75093.1| thymidylate kinase [Chlamydophila psittaci Mat116]
Length = 207
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 90/218 (41%), Gaps = 33/218 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKST-----PPSSIMSLREK---FDAHDSLLRRA 111
IV EG +G GKS +Q + KL A K P S + R + D + +
Sbjct: 2 FIVIEGCEGSGKSSLTQLLKDKLMAEGKEVVATREPGGSSLGERVRDWILDPSTTEI-SP 60
Query: 112 YYSLGNYIA--AQDIKQDL-----QKQPVVMDRFWHSTSAY-----GMANELVKNSDLKL 159
Y L ++A AQ I + + + VV DRF ST Y G+ E V N +
Sbjct: 61 YTELFLFLAARAQHITEKILPALELGKIVVCDRFHDSTIVYQGIVGGLGKEYVTNLCHSV 120
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKKNAKFRELLTT 218
E + P+L L + L+R ++K+F EN+ L + K RE +
Sbjct: 121 VGEKK---------ILPNLTCLLDIPADEGLKRKQQQKSFDKFENKSLAYHTKIREGFLS 171
Query: 219 IYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPMFK 256
+ + P+ V ++ + + ES N ++ L + K
Sbjct: 172 LAE--SRPDSYLVLDARQPIEESLNKVMTAYTELALCK 207
>gi|419759845|ref|ZP_14286130.1| thymidylate kinase [Thermosipho africanus H17ap60334]
gi|407514884|gb|EKF49670.1| thymidylate kinase [Thermosipho africanus H17ap60334]
Length = 201
Score = 36.6 bits (83), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 23/149 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKST-----PPSSIMSLREK---FDAHDSLLRRA 111
I FEG+DG GKS +++ LK+ K P +I+ + + D + ++ +R+
Sbjct: 2 FIAFEGIDGSGKSTQLNLLSQYLKSKGKKVLNIREPGGTILGEKIRDILLDNNLNINKRS 61
Query: 112 ----YYSLGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSDLKLPD-EDD 164
+ + + + IK L++ V+ DRF S+ AY G A + + L D D
Sbjct: 62 ELLLFLASRAQLVEEVIKPHLERGFFVLADRFSDSSIAYQGGARNIGVETVSTLNDFATD 121
Query: 165 DIYSWPKDLMKPDLVIYLTVSEAIRLQRL 193
+IY PD+V Y+ + I ++RL
Sbjct: 122 NIY--------PDIVFYIDIPTKIAMERL 142
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,825,237,913
Number of Sequences: 23463169
Number of extensions: 152069078
Number of successful extensions: 388228
Number of sequences better than 100.0: 733
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 641
Number of HSP's that attempted gapping in prelim test: 387575
Number of HSP's gapped (non-prelim): 751
length of query: 259
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 120
effective length of database: 9,097,814,876
effective search space: 1091737785120
effective search space used: 1091737785120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 75 (33.5 bits)