BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16563
(259 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5EBM0|CMPK2_HUMAN UMP-CMP kinase 2, mitochondrial OS=Homo sapiens GN=CMPK2 PE=1 SV=3
Length = 449
Score = 144 bits (364), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 119/196 (60%), Gaps = 3/196 (1%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
K+ ++ EGLD GK+ +Q+VA LKA L +PPS I R+ FD +++RRA+YSLG
Sbjct: 251 KFQVVAIEGLDATGKTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPTIIRRAFYSLG 310
Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
NYI A +I ++ K PV++DR+WHST+ Y +A E V LP +Y WP+DL+KP
Sbjct: 311 NYIVASEIAKESAKSPVIVDRYWHSTATYAIATE-VSGGLQHLPPAHHPVYQWPEDLLKP 369
Query: 177 DLVIYLTVSEAIRLQRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSE 235
DL++ LTVS RLQRL R T EE EL+ N+ FR+ + Y+ M NP VD S
Sbjct: 370 DLILLLTVSPEERLQRLQGRGMEKTREEAELEANSVFRQKVEMSYQRMENPGCHVVDAS- 428
Query: 236 KSVHESSNDIVELIHN 251
S + ++ LI N
Sbjct: 429 PSREKVLQTVLSLIQN 444
>sp|Q3U5Q7|CMPK2_MOUSE UMP-CMP kinase 2, mitochondrial OS=Mus musculus GN=Cmpk2 PE=2 SV=2
Length = 447
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 3/196 (1%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
K+ +I EGLD GK+ +Q+V++ LKA L +PP I R+ FD +++RRA+YSLG
Sbjct: 251 KFQVIAIEGLDATGKTTLTQSVSESLKAVLLQSPPPCISQWRKIFDDEPTIIRRAFYSLG 310
Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
NY+ A +I ++ PV++DR+WHST+ Y +A E V LP +Y WP DL+KP
Sbjct: 311 NYLVASEIAKESTNFPVIVDRYWHSTATYAIATE-VSGGLQYLPPAHHPVYQWPGDLLKP 369
Query: 177 DLVIYLTVSEAIRLQRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSE 235
DLV+ LTV+ R++RL R + T EE EL+ N FR+ + Y+ M NP VD S
Sbjct: 370 DLVLLLTVNSEERVRRLQGRGQEKTKEEAELEANNVFRQKVEMTYQRMENPSCHLVDAS- 428
Query: 236 KSVHESSNDIVELIHN 251
S ++ELI +
Sbjct: 429 PSRETVLQKVLELIQS 444
>sp|Q57741|KTHY_METJA Probable thymidylate kinase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=tmk PE=3 SV=1
Length = 188
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 28/202 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS--LREKFDAHDSLLRRAYYSLGN 117
IVFEG+DG GK+ S+ +AKK+ A P +S++ +RE + + +L
Sbjct: 6 FIVFEGIDGSGKTTQSKLLAKKMDAFWTYEPSNSLVGKIIREILSGKTEVDNK---TLAL 62
Query: 118 YIAAQD------IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK 171
AA IK++L+K+ VV DR+ +S+ AY + +N I S +
Sbjct: 63 LFAADRIEHTKLIKEELKKRDVVCDRYLYSSIAYQSVAGVDENF----------IKSINR 112
Query: 172 DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFV 231
+KPD+V L V L+R+ + F ++ K K+ EL + +
Sbjct: 113 YALKPDIVFLLIVDIETALKRVKTKDIFEKKDFLKKVQDKYLEL-------AEEYNFIVI 165
Query: 232 DNSEKSVHESSNDIVELIHNLP 253
D ++KSV E N+I+ + N+P
Sbjct: 166 DTTKKSVEEVHNEIIGYLKNIP 187
>sp|Q04UJ2|KTHY_LEPBJ Thymidylate kinase OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197) GN=tmk PE=3 SV=1
Length = 205
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 20/150 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMS---LREKFDAHDSLLRR-- 110
+VFEG+DG GKS +++ +KL S+ T P++ + LR+ L R+
Sbjct: 8 FVVFEGIDGSGKSTLCKSLTEKLTERGIPSVNFTEPTNFETGKYLRKFLRGEIDLERKEQ 67
Query: 111 --AYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
A+ + Q+I L+ + V++DR+ +ST+AY ++L+ + ++
Sbjct: 68 IDAFLNDREESLRQNILPSLESGKNVLLDRYMYSTAAYQSGDDLLPETIIE--------K 119
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ K+ PDL+ YL ++ AI L+RLS+RK
Sbjct: 120 NLKKNFKIPDLLFYLDLNPAIALERLSQRK 149
>sp|Q04YY2|KTHY_LEPBL Thymidylate kinase OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550) GN=tmk PE=3 SV=1
Length = 205
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 20/150 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMS---LREKFDAHDSLLRR-- 110
+VFEG+DG GKS +++ +KL S+ T P++ + LR+ L R+
Sbjct: 8 FVVFEGIDGSGKSTLCKSLTEKLTERGIPSVNFTEPTNFETGKYLRKFLRGEIDLERKEQ 67
Query: 111 --AYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
A+ + Q+I L+ + V++DR+ +ST+AY ++L+ + ++
Sbjct: 68 IDAFLNDREESLRQNILPSLESGKNVLLDRYMYSTAAYQSGDDLLPETIIE--------K 119
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ K+ PDL+ YL ++ AI L+RLS+RK
Sbjct: 120 NLKKNFKIPDLLFYLDLNPAIALERLSQRK 149
>sp|A4FXE4|KTHY_METM5 Probable thymidylate kinase OS=Methanococcus maripaludis (strain C5
/ ATCC BAA-1333) GN=tmk PE=3 SV=1
Length = 199
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 38/212 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM--SLREKFDAHDSLLRRAYYSLGN 117
IVFEG+DGCGK+ ++ +A+KL A P + S+RE +L
Sbjct: 4 FIVFEGIDGCGKTTQAKLIAEKLNAKFTFEPTDGKIGKSIREILSGSQCQKE----TLAL 59
Query: 118 YIAAQ------DIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK 171
AA +I++DL+K VV DR+ +S+ Y ++ + K D IY+
Sbjct: 60 LFAADRVEHVFNIEEDLKKSHVVSDRYVYSSIIYQISQGISK----------DFIYTIND 109
Query: 172 DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPE---- 227
PDLV+ L V L+R+ R+ E+ E++K K Y N+ N E
Sbjct: 110 YAKTPDLVVLLDVDLNEALKRMESREKEIFEKIEIQKKIK------EGYYNLINSEDKKF 163
Query: 228 -----LVFVDNSEKSVHESSNDIVE-LIHNLP 253
+ V+ + KS+H+ ++I+ +I +P
Sbjct: 164 MPKYGFIIVNTTSKSIHQVFDEILNAIIDKIP 195
>sp|Q6L016|KTHY_PICTO Probable thymidylate kinase OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=tmk PE=3
SV=1
Length = 202
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 19/148 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS--LREKFDAHDSLLRRAYYSLGN 117
I EG+DG GK+ + +A L P + ++ S++ ++L
Sbjct: 8 FIAIEGIDGSGKTTLAGDIASYTGFYLTREPTDRFCYDYIEADYNDESSIINFFLFTLDR 67
Query: 118 YIAAQDIKQDLQKQPVVMDRFWHSTSAY---GMANELVKNSDLKLPDEDDDIYSWPKD-- 172
Y+ ++IK L V+ DR+ S+ AY GM KN D + SW D
Sbjct: 68 YMHQKEIKNHLI-NGVISDRYVFSSIAYQGSGMEKRF-KNMDETI--------SWMLDVS 117
Query: 173 --LMKPDLVIYLTVSEAIRLQRLSRRKN 198
++ PDL+IYL + I L+RL+ RKN
Sbjct: 118 RFIIMPDLIIYLKIDPGIALKRLNLRKN 145
>sp|Q8F7Y6|KTHY_LEPIN Thymidylate kinase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=tmk
PE=3 SV=2
Length = 204
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 26/158 (16%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAY 112
++K +VFEG+DG GKS +++ +KL ++ PS+ + + L + R
Sbjct: 3 NKKPIFVVFEGIDGSGKSTLCKSLTEKL---IELGIPSAAFTEPTNLETGKYLRKFLRGE 59
Query: 113 YSLGN--YIAA------QDIKQDL-----QKQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
LG I A + +KQ++ + V++DR+ +ST+AY ++L LK
Sbjct: 60 IELGKEEQIEAFLNDREESLKQNILPALNSDKNVLLDRYMYSTAAYQSGDDLSPEMILK- 118
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ ++ PDL+ YL +S +I L+RL+RRK
Sbjct: 119 -------KNLNRNFKIPDLLFYLDLSPSIALERLNRRK 149
>sp|Q72NL9|KTHY_LEPIC Thymidylate kinase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=tmk PE=3 SV=1
Length = 204
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 26/158 (16%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAY 112
++K +VFEG+DG GKS +++ +KL ++ PS+ + + L + R
Sbjct: 3 NKKPIFVVFEGIDGSGKSTLCKSLTEKL---IELGIPSAAFTEPTNLETGKYLRKFLRGE 59
Query: 113 YSLGN--YIAA------QDIKQDL-----QKQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
LG I A + +KQ++ + V++DR+ +ST+AY ++L LK
Sbjct: 60 IELGKEEQIEAFLNDREESLKQNILPALNSDKNVLLDRYMYSTAAYQSGDDLSPEMILK- 118
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ ++ PDL+ YL +S +I L+RL+RRK
Sbjct: 119 -------KNLNRNFKIPDLLFYLDLSPSIALERLNRRK 149
>sp|A6VFY2|KTHY_METM7 Probable thymidylate kinase OS=Methanococcus maripaludis (strain C7
/ ATCC BAA-1331) GN=tmk PE=3 SV=1
Length = 199
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 102/209 (48%), Gaps = 32/209 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM--SLREKFDAHDSLLRRAYYSLGN 117
IVFEG+DGCGK+ ++ +A+KL A P + S+RE S ++ +L
Sbjct: 4 FIVFEGIDGCGKTTQAKLIAEKLNAKFTFEPTDGKIGKSIREILSG--SKCQKETLAL-- 59
Query: 118 YIAAQD-------IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
+ A D I++DL+K VV DR+ +S+ Y M+ + K D IY+
Sbjct: 60 -LFAADRVEHVSKIEEDLKKSHVVSDRYVYSSIVYQMSQGIPK----------DFIYTIN 108
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNN---PE 227
PDLV+ L V L+R+ R+ E+ E++K K +E ++ + N P+
Sbjct: 109 DYAKTPDLVVLLDVDLNEALKRMESREKEIFEKIEIQK--KIKEGYYSLINSENEKFMPK 166
Query: 228 --LVFVDNSEKSVHESSNDIV-ELIHNLP 253
+ +D + KS+ + ++I+ +I +P
Sbjct: 167 YGFIIIDTTSKSITQVFDEILNAIIDKIP 195
>sp|A9AAR4|KTHY_METM6 Probable thymidylate kinase OS=Methanococcus maripaludis (strain C6
/ ATCC BAA-1332) GN=tmk PE=3 SV=1
Length = 199
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 32/209 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM--SLREKFDAHDSLLRRAYYSLGN 117
IVFEG+DGCGK+ ++ +A++L A P + S+RE S ++ +L
Sbjct: 4 FIVFEGIDGCGKTTQAKLIAERLNAKFTFEPTDGKIGKSIREILSG--SKCQKETLAL-- 59
Query: 118 YIAAQD-------IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
+ A D I++DL+K +V DR+ +S+ Y M+ + K D IY+
Sbjct: 60 -LFAADRVEHVSKIEEDLKKSHIVSDRYVYSSIVYQMSQGIPK----------DFIYTIN 108
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNP---- 226
PDLV+ L V L+R+ R+ E+ E++K K +E ++ + N
Sbjct: 109 DYAKTPDLVVLLDVDLNEALKRMESREKEIFEKIEIQK--KIKEGYYSLINSENEKFMPT 166
Query: 227 -ELVFVDNSEKSVHESSNDIVE-LIHNLP 253
+ +D + KS+++ ++I+ +I +P
Sbjct: 167 YGFIIIDTTSKSINQVFDEILNAIIDKIP 195
>sp|A6UP44|KTHY_METVS Probable thymidylate kinase OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=tmk PE=3 SV=1
Length = 198
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 22/160 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM--SLREKFDAHDSLLRRAYYSLGN 117
IVFEG+DG GK+ ++ +A+KL A P + + ++RE + +L
Sbjct: 4 FIVFEGIDGSGKTTQAKMLAEKLNAEYTCEPTTGKIGRTIREVLSGSEC----KKETLAL 59
Query: 118 YIAA------QDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK 171
AA +I++ LQK VV DR+ +S+ Y + K + IYS
Sbjct: 60 LFAADRVEHVSEIEKMLQKSHVVTDRYVYSSIIYQTMQGISK----------EFIYSINF 109
Query: 172 DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK 211
PD+V+ L V L+R+ R+ E+ E +K K
Sbjct: 110 FAKIPDIVVILDVDTEEALKRMEFREKEIFEKIEFQKKIK 149
>sp|Q975E6|KTHY1_SULTO Probable thymidylate kinase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=tmk1 PE=3 SV=1
Length = 190
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 33/159 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPS-SIMSLREKFDAHDSLLRRAYY 113
I FEG+DG GK+ ++ V + LK L P + I L +K +D +L +
Sbjct: 4 FISFEGIDGAGKTTLAKKVYEVLKKKGYNVILTQEPFTREITELIKKAGWNDPVLLTLLF 63
Query: 114 SLGNYIAAQDIKQDLQKQP--VVMDRFWHSTSAY----GMANELVKNSDLKLPDEDDDIY 167
S A IK ++++P V+MDR++HST AY G+ + ++ + K P
Sbjct: 64 SADR---AFHIKWIMEQKPEIVLMDRYFHSTIAYQSVLGLDEKWIEEVNSKFP------- 113
Query: 168 SWPKDLMKPDLVIYL--TVSEAIRLQRLSRRKNFTLEEN 204
KPD+V L V+EAI+ R+ + F EE
Sbjct: 114 -------KPDIVFLLDIKVNEAIK--RIRKDDQFNFEEK 143
>sp|Q6LYF7|KTHY_METMP Probable thymidylate kinase OS=Methanococcus maripaludis (strain S2
/ LL) GN=tmk PE=3 SV=1
Length = 199
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM--SLREKFDAHDSLLRRAYYSLGN 117
IVFEG+DGCGK+ ++ VA+KL A+ P + S+RE S + +L
Sbjct: 4 FIVFEGIDGCGKTTQAKLVAEKLNANFTFEPTDGKIGKSIREILAG--SKCNKETLAL-- 59
Query: 118 YIAAQD-------IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
+ A D I++DL+ VV DR+ +S+ Y M + K+ K+ D
Sbjct: 60 -LFAADRVEHVSKIEEDLKNAHVVSDRYVYSSIVYQMTQGIPKDFIYKIND 109
>sp|C0R1X1|KTHY_BRAHW Thymidylate kinase OS=Brachyspira hyodysenteriae (strain ATCC 49526
/ WA1) GN=tmk PE=3 SV=1
Length = 203
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 34/195 (17%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYS-- 114
K LIV EG+DG GKS ++ L L + SI + + S LR + S
Sbjct: 2 KGKLIVLEGIDGSGKS----SIGMMLTDILNNIGIKSIYTFEPTHAYYGSKLRESMLSKD 57
Query: 115 ------LGNYIA--AQDIKQDLQKQ-----PVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
L +IA + IK ++ +V+DR+ HS+ AY A + K
Sbjct: 58 LTPEEELSLFIADRKEHIKHMIRPAINDGYVIVLDRYMHSSIAYQGAKGIDKEY------ 111
Query: 162 EDDDIYSWPKD-LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY 220
IY+ KD +++PDLV L ++ L R+ ++ F + +N + E + I+
Sbjct: 112 ----IYNLHKDFILEPDLVFILHLNIETALNRIMEKRGFV----DRFENKHYLEEVDKIF 163
Query: 221 RNMNNPELVFVDNSE 235
+ N P + +D S+
Sbjct: 164 SSFNEPYMHHIDASK 178
>sp|Q22018|KTHY_CAEEL Probable thymidylate kinase OS=Caenorhabditis elegans GN=R53.2 PE=3
SV=1
Length = 218
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 49/169 (28%)
Query: 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL---------KSTPPSSIMS-------- 96
D ++ LIVFEGLD GKS T AK+L S+ S+ PS+++
Sbjct: 4 DQKRGLLIVFEGLDRSGKS----TQAKRLVESINKKSTESGDASSSPSAVLQAFPDRSSS 59
Query: 97 --------LREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGM 147
LR++ D + L +S + Q I+ ++ K V+ DR+ +S AY +
Sbjct: 60 IGKLIDQYLRKEIDMDEHAL-HLLFSADRFSKNQMIRDNIAKGIDVICDRYCYSGVAYSL 118
Query: 148 ANEL----VKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQR 192
A L V++SD+ LP KPD V++ VS + QR
Sbjct: 119 AKGLPEQWVRSSDVGLP--------------KPDAVLFFDVSPEVAAQR 153
>sp|A7HKW8|KTHY_FERNB Thymidylate kinase OS=Fervidobacterium nodosum (strain ATCC 35602 /
DSM 5306 / Rt17-B1) GN=tmk PE=3 SV=1
Length = 197
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 26/205 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS----LKSTPPSSIM---SLREKFDAHDSLLRRA- 111
+ FEG+DGCGKS + L+ +K P +RE + R
Sbjct: 2 FVSFEGIDGCGKSTQVNLLVNYLEEKGIPYIKVREPGGTHLGEKIRELLITQEMCARSEL 61
Query: 112 --YYSLGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNSDLKLPDEDDDIY 167
+ + + IK L+ +V+ DRF HS+ AY G EL P+ +
Sbjct: 62 LLFLASRAQLVESVIKPALKNGKIVIADRFAHSSVAYQGCGRELG-------PETVKILN 114
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM--NN 225
+ D PD+V Y+ V + ++R+ + +E K+ +F E + Y M N
Sbjct: 115 DFATDKTYPDIVFYIDVPVNVAMERMKNQHKDRIE----KEGKEFWESIRNCYLKMAKEN 170
Query: 226 PELVFVDNSEKSVHESSNDIVELIH 250
V +D + +++ E +IV++ +
Sbjct: 171 ENFVIIDGT-RTIEEIHREIVKVFN 194
>sp|O67099|KTHY_AQUAE Thymidylate kinase OS=Aquifex aeolicus (strain VF5) GN=tmk PE=1
SV=1
Length = 195
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 31/158 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK-----ASLKSTPPSSIMS-------LREKFDAHDSL 107
LI FEG+DG GK+ ++ + + LK SL P + + L E+ D L
Sbjct: 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLTEELDERTEL 61
Query: 108 LRRAYYSLGNYIAAQDIKQDLQKQPVV-MDRFWHSTSAY-----GMANELVKNSDLKLPD 161
L + + + + + I DL++ VV +DRF ST AY G+ E +KN
Sbjct: 62 L--LFEASRSKLIEEKIIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKN------- 112
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF 199
+ + +KPD+ + L + I L+RL + F
Sbjct: 113 ----LNEFATRGVKPDITLLLDIPVDIALRRLKEKNRF 146
>sp|Q9UXG7|KTHY1_SULSO Probable thymidylate kinase 1 OS=Sulfolobus solfataricus (strain
ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=tmk1 PE=3
SV=1
Length = 189
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 27/166 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK-----STPPSS--IMSLREKFDAHDSLLRRAY 112
LI EG+DG GK+ + + + L++ +K + P S I+ L EK +D +L
Sbjct: 4 LIAIEGIDGSGKTTLANLLKEHLESKMKLNVIVTREPFSEDIIKLIEKIGWNDPILLVLL 63
Query: 113 YSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAY----GMANELVKNSDLKLPDEDDDIYS 168
++ I + + +++DR++ S+ AY G+ + +K + P
Sbjct: 64 FAADREIHVNWLSKIKDADLIILDRYYFSSIAYQGALGVDEQWIKMVNSYFP-------- 115
Query: 169 WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214
KPD+VI L + + + R+ K F EE ++K AK RE
Sbjct: 116 ------KPDMVILLDLPIEVAISRIKNDK-FNFEE-KIKSLAKVRE 153
>sp|Q3MBQ2|KTHY_ANAVT Thymidylate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=tmk PE=3 SV=1
Length = 211
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 99/211 (46%), Gaps = 36/211 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK-----ASLKSTPPSSIMSLREKFDAHDSLLRRA--- 111
IVFEG++GCGK+ Q A+ L+ L P + + + D LL++A
Sbjct: 5 FIVFEGVEGCGKTSQMQLCAEWLQNLGISVILTREPGGTELGV----DLRRLLLQKAEDK 60
Query: 112 ----YYSLGNYIA--AQDIKQDL-----QKQPVVMDRFWHSTSAYGMANELVKNSDLKLP 160
L Y A AQ + Q+L Q + ++ DR+ ST AY +N D+ L
Sbjct: 61 PIAEVTELLLYAADRAQHVAQELKPKLAQGKYILCDRYVDSTIAY---QGYGRNLDMNLI 117
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY 220
+ +DI + + D+ I+L V + L R R +N L+ E ++ F + Y
Sbjct: 118 HQLNDIATGG---LTSDITIWLDVDVEVGLAR-KRGENVGLDRIE-QETIAFHRRVQQGY 172
Query: 221 RNM--NNP-ELVFVDN--SEKSVHESSNDIV 246
N+ ++P ++ VD S+++VH++ +I+
Sbjct: 173 ANLAASSPSRIIRVDGQLSKETVHKTIQEIL 203
>sp|A6UTV9|KTHY_META3 Probable thymidylate kinase OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=tmk PE=3 SV=1
Length = 196
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 90/199 (45%), Gaps = 26/199 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS-IMSLREKFDAHDSLLRRAYYSL--G 116
IVFEG+DG GK+ ++ +A L P + I L K + + + L G
Sbjct: 4 FIVFEGIDGSGKTTQAKLLADYLNGIYTCEPTNGEIGQLIRKVLGGKNCEKESLALLFAG 63
Query: 117 NYIA-AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK 175
+ + ++I+ L + V+ DR+ +S+ Y + ++ D+ D I S +
Sbjct: 64 DRVEHIKEIEHKLIENMVICDRYVYSSMVY----QSIQGIDI------DFIASINRFAKI 113
Query: 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPEL------- 228
PD++IYL VS L+R+ R + E+ +N + + + Y N+ N L
Sbjct: 114 PDVLIYLDVSIEESLKRMGDR-----DSKEIFENKEILQKVNKKYMNIINERLFEPKNGY 168
Query: 229 VFVDNSEKSVHESSNDIVE 247
+ ++ K+V E +I++
Sbjct: 169 ILINTDNKTVEEVHKEIIK 187
>sp|Q49UZ1|KTHY_STAS1 Thymidylate kinase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=tmk
PE=3 SV=1
Length = 205
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 37/212 (17%)
Query: 59 PLIVFEGLDGCGKSHTSQTVAKKLK---ASLKSTPPSSIMS---LREKF-------DAHD 105
I FEG +G GK+ Q VA+KL+ + + + P + + +RE D +
Sbjct: 3 AFITFEGPEGSGKTTVIQQVAQKLENQYSVVLTREPGGVKTGEQIREVLLEGDDMDDRTE 62
Query: 106 SLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAY-----GMANELVKNSDLKLP 160
+LL A S ++ + I + V+ DR+ S+ AY G+ E VK+
Sbjct: 63 ALLFAA--SRREHLVGKVIPSLENGKLVLCDRYIDSSLAYQGYARGIGIEEVKS------ 114
Query: 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL-KKNAKFRELLTTI 219
I + + + PD+ IYL VS A+ +R+ + + +N L +++ KF E +
Sbjct: 115 -----INEFAINGLYPDITIYLDVSVAVGRERILKNQR---NQNRLDQEDVKFHEKVVEG 166
Query: 220 YRNM--NNPELVFVDNSEKSVHESSNDIVELI 249
Y+ + N E V +++S+ E N E I
Sbjct: 167 YKKIIHNESERFIVIEADRSIDEVVNATYESI 198
>sp|Q9X0I3|KTHY_THEMA Thymidylate kinase OS=Thermotoga maritima (strain ATCC 43589 / MSB8
/ DSM 3109 / JCM 10099) GN=tmk PE=1 SV=1
Length = 197
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 28/200 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMSLR-EKFDAHDSLLRRAYY 113
I FEG+DG GKS Q +A+ L K LK P + + K + + +A
Sbjct: 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAEL 61
Query: 114 SLGNYIAAQ-----DIKQDL-QKQPVVMDRFWHSTSAY-GMANELVKNSDLKLPDEDDDI 166
L ++A++ +IKQ L + V++DR+ S+ AY G L K +L D
Sbjct: 62 FL--FLASRNLLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELND----- 114
Query: 167 YSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNP 226
+ D + PDL Y+ V L+R F E+ E + + RE + R +P
Sbjct: 115 --FATDGLIPDLTFYIDVDVETALKRKGELNRF--EKREFLE--RVREGYLVLAR--EHP 166
Query: 227 ELVFVDNSEKSVHESSNDIV 246
E + V + ++S+ E D+V
Sbjct: 167 ERIVVLDGKRSIEEIHRDVV 186
>sp|B1L821|KTHY_THESQ Thymidylate kinase OS=Thermotoga sp. (strain RQ2) GN=tmk PE=3 SV=1
Length = 197
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 28/200 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMSLR-EKFDAHDSLLRRAYY 113
I FEG+DG GKS Q +A+ L K LK P + + K + + +A
Sbjct: 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAEL 61
Query: 114 SLGNYIAAQ-----DIKQDL-QKQPVVMDRFWHSTSAY-GMANELVKNSDLKLPDEDDDI 166
L ++A++ +IKQ L + V++DR+ S+ AY G L K ++ +E +D+
Sbjct: 62 FL--FLASRNLLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGK----EIVEELNDL 115
Query: 167 YSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNP 226
+ D + PDL Y+ V L+R F E+ E ++ RE + R +P
Sbjct: 116 AT---DGLIPDLTFYIDVDVETALKRKGELNRF--EKREFLEHV--REGYLVLAR--EHP 166
Query: 227 ELVFVDNSEKSVHESSNDIV 246
E + V + ++S+ E D+V
Sbjct: 167 ERIVVLDGKRSIEEIHRDVV 186
>sp|Q83FM3|KTHY_TROWT Thymidylate kinase OS=Tropheryma whipplei (strain Twist) GN=tmk
PE=3 SV=1
Length = 199
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 26/151 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK----STPPSSIMSLREKFDAHDSLLR------ 109
+ FEG+DG GK+ + LKAS K + P +I +R+ A D +R
Sbjct: 2 FVTFEGIDGSGKTAQLTAAGEFLKASGKQVVLTREPGTISCIRDYVLASDMDIRTEALLY 61
Query: 110 ---RAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMA-NELVKNSDLKLPDEDDD 165
RA N I A + + V+ DR+ S AY +A N+LV+ ++L
Sbjct: 62 SADRAENIAKNVIPALN-----AGKVVLQDRYLDSFLAYQLADNKLVETDIMRL------ 110
Query: 166 IYSWPKDLMKPDLVIYLTVSEAIRLQRLSRR 196
+ + ++PDL + ++ A +RL R
Sbjct: 111 -FEFSSQGLRPDLTLLFDLTPACAQERLENR 140
>sp|Q83HB8|KTHY_TROW8 Thymidylate kinase OS=Tropheryma whipplei (strain TW08/27) GN=tmk
PE=3 SV=1
Length = 199
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 26/151 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK----STPPSSIMSLREKFDAHDSLLR------ 109
+ FEG+DG GK+ + LKAS K + P +I +R+ A D +R
Sbjct: 2 FVTFEGIDGSGKTAQLTAAGEFLKASGKQVVLTREPGTISCIRDYVLASDMDIRTEALLY 61
Query: 110 ---RAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMA-NELVKNSDLKLPDEDDD 165
RA N I A + + V+ DR+ S AY +A N+LV+ ++L
Sbjct: 62 SADRAENIAKNVIPALN-----AGKVVLQDRYLDSFLAYQLADNKLVETDIMRL------ 110
Query: 166 IYSWPKDLMKPDLVIYLTVSEAIRLQRLSRR 196
+ + ++PDL + ++ A +RL R
Sbjct: 111 -FEFSSQGLRPDLTLLFDLTPACAQERLENR 140
>sp|Q54GN2|KTHY_DICDI Thymidylate kinase OS=Dictyostelium discoideum GN=dtymk PE=3 SV=1
Length = 222
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 34/201 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVA-----------KKLKASLKSTPPSSIMS--LREKFDAHDS 106
I+FEG+D GKS Q++ K L+ ++TP I++ L+ + D
Sbjct: 21 FILFEGVDRVGKSTQVQSLTNHISNVQKLPTKSLRFPDRTTPIGQIINQYLQNATNMDDR 80
Query: 107 LLRRAYYSLGNYIAAQDIKQDL--QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD 164
L + S N A+D +L +V+DR+ +S AY A K D D
Sbjct: 81 ALHLLFSS--NRWEARDSILELLNNGTNIVVDRYSYSGVAYSAA----KGIDF------D 128
Query: 165 DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN 224
Y+ K L KPDL+ YL++S + ++R + E E +F++ + IY
Sbjct: 129 WCYACEKGLPKPDLIFYLSMSS----EDATKRGEYGGERYE---KLEFQKKIKQIYEEKL 181
Query: 225 NPELVFVDNSEKSVHESSNDI 245
+ + N+ +S+ E SN+I
Sbjct: 182 VDDQWKIINANRSIDEISNEI 202
>sp|P23919|KTHY_HUMAN Thymidylate kinase OS=Homo sapiens GN=DTYMK PE=1 SV=4
Length = 212
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 45/208 (21%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
R+ LIV EG+D GKS S+ + + L A+ +ST ++S L++K D
Sbjct: 4 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 63
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
D + +S + IK+ L Q +V+DR+ S A+ A E K D+
Sbjct: 64 EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV 122
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
LP KPDLV++L ++L ++R F E E N F+E
Sbjct: 123 GLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NGAFQERAL 161
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
+ + N ++V S ++VHE
Sbjct: 162 RCFHQLMKDTTLNWKMVDASKSIEAVHE 189
>sp|Q5ZVP1|KTHY_LEGPH Thymidylate kinase OS=Legionella pneumophila subsp. pneumophila
(strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=tmk
PE=3 SV=1
Length = 212
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 42/220 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAY------- 112
LIV EGL+G GKS A L L S S ++ RE + R+
Sbjct: 8 LIVIEGLEGAGKS-----TAVNLVVELLSQKKISTITTREPGGTKIGEILRSIIKNPEYN 62
Query: 113 ------------YSLGNYIAAQDIKQDLQ-KQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
Y+ + Q IK L Q V+ DRF ST AY + D+++
Sbjct: 63 NVLDDRSELLLLYAARIQLIEQVIKPALNVGQWVIADRFELSTLAYQGGG---RKMDMRV 119
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTI 219
+E + ++ KPDL +YL ++ + + R R F E E + +F +
Sbjct: 120 INE---LSNFCLKGFKPDLTLYLDINPELGMIRAKSRGKFDRIEQE---SIEFFHRIHDT 173
Query: 220 YRNM--NNPELVFVDNSEKSVHESSNDIVELI-----HNL 252
Y + NPE++ +D + +S+ E + I +I HNL
Sbjct: 174 YHILVKQNPEIIMID-ANRSLEEVQSSIQSVIEEFIEHNL 212
>sp|Q4JAC4|KTHY_SULAC Probable thymidylate kinase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=tmk PE=3 SV=1
Length = 194
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 47/202 (23%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL--------KASLKSTPPSS-IMSLREKFDAHDSL--- 107
+I FEG+DG GK+ S+ + +KL K L S P S I+ L E+ D +
Sbjct: 3 IISFEGIDGSGKTTISKIIYEKLLIEIGSNKKIILTSEPFSQEIIKLIEEIGWKDPISLA 62
Query: 108 ----LRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAY----GMANELVKNSDLKL 159
RAY+ N + Q+ + ++MDR+ ST AY G+ ++N +
Sbjct: 63 LLFTADRAYHL--NLLFKQN------PEIIIMDRYIDSTIAYQSSLGIDENWIRNLNKYF 114
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN-FTLEENELKKNAKFRELLTT 218
P+ PDL I L + + R+ + + F +E ++ +K RE
Sbjct: 115 PE--------------PDLTILLDLKPETAIARIKNKVDKFNFDE-KISTLSKVREKYLE 159
Query: 219 IYRNMNNPELVFVDNSEKSVHE 240
+ + N +V N+EKS+ E
Sbjct: 160 LAKRNNKIRIV---NAEKSIDE 178
>sp|A5IN77|KTHY_THEP1 Thymidylate kinase OS=Thermotoga petrophila (strain RKU-1 / ATCC
BAA-488 / DSM 13995) GN=tmk PE=3 SV=1
Length = 197
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 40/206 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSS-------IMSLREKFDAHDSL 107
I FEG+DG GKS + +A+ L + LK P + + L+E+ L
Sbjct: 2 FITFEGIDGSGKSTQIKLLARYLEKRGKRVILKREPGGTETGEKIRKLLLKEEMTPKAEL 61
Query: 108 LRRAYYSLGNYIAAQDIKQDLQKQPVV-MDRFWHSTSAY-GMANELVKNSDLKLPDEDDD 165
+ + +IK+ L + VV +DR+ S+ AY G L K KL D
Sbjct: 62 F---LFLASRNLLVMEIKRYLSEGYVVLLDRYTDSSVAYQGFGRNLGKEIVEKLND---- 114
Query: 166 IYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM-- 223
+ D + PDL Y+ V L R + EL + K RE L +
Sbjct: 115 ---FATDSLVPDLTFYIDVDVETALNR----------KGELNRFEK-REFLERVREGYLV 160
Query: 224 ---NNPELVFVDNSEKSVHESSNDIV 246
+PE + V + ++S+ E D+V
Sbjct: 161 LAKEHPERIVVLDGKRSIEEIHRDVV 186
>sp|A8GXQ1|KTHY_RICB8 Thymidylate kinase OS=Rickettsia bellii (strain OSU 85-389) GN=tmk
PE=3 SV=1
Length = 206
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 23/151 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS------LKSTPPSSIMSLREKFDAHDSL-----L 108
I FEG +G GKS Q + + LK+ + +++ + H L L
Sbjct: 9 FITFEGGEGIGKSTQCQMLYEYLKSQNIPVILTREVGGTNVAEKMREILVHTDLLPMSEL 68
Query: 109 RRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168
+A + +++ + I V+ DRF ST+ Y L+L + + +Y+
Sbjct: 69 LQAMAARYDHMVKKIIPALQAGNIVICDRFIDSTACY---------QGLELENGIELVYN 119
Query: 169 WPKDLM---KPDLVIYLTVSEAIRLQRLSRR 196
KDLM PDL ++ V +I ++R++ R
Sbjct: 120 LHKDLMPPLMPDLTFFIDVESSIAIERINSR 150
>sp|Q5WWU9|KTHY_LEGPL Thymidylate kinase OS=Legionella pneumophila (strain Lens) GN=tmk
PE=3 SV=1
Length = 212
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 42/220 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAY------- 112
LIV EGL+G GKS A L L S S ++ RE + R+
Sbjct: 8 LIVIEGLEGAGKS-----TAVNLVVELLSQKKISTITTREPGGTKIGEILRSIIKNPEYN 62
Query: 113 ------------YSLGNYIAAQDIKQDLQ-KQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
Y+ + Q IK L Q V+ DRF ST AY + D+++
Sbjct: 63 NVLDDRSELLLLYAARIQLIEQVIKPALNVGQWVIADRFELSTLAYQGGG---RKMDMRV 119
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTI 219
+E + ++ KPDL +YL ++ + + R R F E E + +F +
Sbjct: 120 INE---LSNFCLKGFKPDLTLYLDINPELGMIRAKSRGKFDRIEQE---SIEFFHRIHDT 173
Query: 220 YRNM--NNPELVFVDNSEKSVHESSNDIVELI-----HNL 252
Y + NPE++ +D + +S+ E + I +I HNL
Sbjct: 174 YHILVKQNPEIMMID-ANRSLEEVQSSIQSVIEEFIEHNL 212
>sp|Q9HLZ2|KTHY_THEAC Probable thymidylate kinase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tmk PE=3 SV=1
Length = 193
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 18/146 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMSLREKFDAHDSLLRRAYYS 114
I EG+DG GK+ ++ + L + + P + + A D + ++
Sbjct: 2 FIAIEGIDGAGKTTLARGIGNMLLGEGYRVYMTKEPTDGMENY-----AGDGVELFLKFT 56
Query: 115 LGNYIAAQDIKQDLQKQPVVM-DRFWHSTSAY---GMANELVKNSDLKLPDEDDDIYSWP 170
+ Y ++I + ++ +V+ DR+ S+ AY G+A E NS+ K + D +
Sbjct: 57 INRYAHQREIDRHIKNGEIVICDRYIRSSYAYQFEGIA-EFFGNSE-KAWEWMDSVSEII 114
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRR 196
K ++PD+ IY+ V E ++R+SRR
Sbjct: 115 K--IRPDVQIYVDVDEETAMERISRR 138
>sp|A5IBP1|KTHY_LEGPC Thymidylate kinase OS=Legionella pneumophila (strain Corby) GN=tmk
PE=3 SV=1
Length = 212
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 91/219 (41%), Gaps = 40/219 (18%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAY------- 112
LIV EGL+G GKS A L L S S ++ RE + R+
Sbjct: 8 LIVIEGLEGAGKS-----TAVNLVVELLSQKKISTITTREPGGTRIGEILRSIIKNPEYN 62
Query: 113 ------------YSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
Y+ + Q IK L + Q V+ DRF ST AY + D+++
Sbjct: 63 NVLDDRSELLLLYAARIQLIEQVIKPALNEGQWVIADRFELSTLAYQGGG---RKMDMRV 119
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTI 219
+E + ++ KPDL +YL ++ + + R R F E E + +F +
Sbjct: 120 INE---LSNFCLKGFKPDLTLYLDINPELGMIRAKSRGKFDRIEQE---SIEFFHRIHDT 173
Query: 220 YRNM--NNPELVFVDNSE--KSVHESSNDIVE--LIHNL 252
Y + NPE++ +D + + V S ++E + HNL
Sbjct: 174 YHILVKQNPEIMMIDANRPLEDVQSSIQSVIEEFIEHNL 212
>sp|Q1RJZ6|KTHY_RICBR Thymidylate kinase OS=Rickettsia bellii (strain RML369-C) GN=tmk
PE=3 SV=1
Length = 206
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 23/151 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS------LKSTPPSSIMSLREKFDAHDSL-----L 108
I FEG +G GKS Q + + LK+ + +++ + H L L
Sbjct: 9 FITFEGGEGIGKSTQCQMLYEYLKSQNIPVILTREVGGTNVAEKMREILVHTDLLPMSEL 68
Query: 109 RRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168
+A + +++ + I V+ DRF ST+ Y L+L + + +Y+
Sbjct: 69 LQAMAARYDHMVKKIIPALQAGNIVICDRFIDSTACY---------QGLELENGIELVYN 119
Query: 169 WPKDLM---KPDLVIYLTVSEAIRLQRLSRR 196
KDLM PDL ++ V +I ++R++ R
Sbjct: 120 LHKDLMPPLMPDLTFFIDVESSIAIERVNSR 150
>sp|O30175|KTHY_ARCFU Probable thymidylate kinase OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=tmk PE=3 SV=1
Length = 196
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 65/152 (42%), Gaps = 22/152 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVA-----KKLKASLKSTPPSS-----IMSLREKFDAHDSLLR 109
LI EG+DG GK+ + +A K K + P S I S E+ + L
Sbjct: 2 LIAVEGIDGAGKTTIAAYIAELLKEKGYKVKVLKEPGDSKFGKKIKSSEERLSPEEEL-- 59
Query: 110 RAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168
+ A ++I LQ VVMDR++ S AY A + D +L E ++
Sbjct: 60 ELFLKDREIDARENILPALQSGYAVVMDRYYFSNIAYQSA----RGIDARLIREMNE--- 112
Query: 169 WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFT 200
K KPDL I L V I L+R+ +R +
Sbjct: 113 --KIAPKPDLTILLDVEPEIALERVRKRGKLS 142
>sp|Q0AIL5|KTHY_NITEC Thymidylate kinase OS=Nitrosomonas eutropha (strain C91) GN=tmk
PE=3 SV=1
Length = 215
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 22/207 (10%)
Query: 60 LIVFEGLDGCGKSHTSQTVA-----KKLKASLKSTPPSSIMS--LREKFDAHDSLLRRAY 112
I FEG+DG GKS +A K L+ + P S+ + LR+ H +
Sbjct: 6 FITFEGIDGAGKSTHLAWLASFLRDKGLEVIVTREPGSTALGEQLRQLLLDHRQAMHAET 65
Query: 113 YSLGNYIAAQD-----IKQDLQKQP-VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDI 166
+L + A ++ I L++ V+ DRF ++ AY V ++ L++ ++
Sbjct: 66 ETLLMFAARREHLDKVILPALERGAWVISDRFTDASFAYQGGGRGVPSARLEILEQ---- 121
Query: 167 YSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT-IYRNMNN 225
W + PDL +Y V I QR+ + T + EL+ + F + + R
Sbjct: 122 --WVQKGFSPDLTVYFDVPVTISRQRVQSAR--TADRFELEPDLFFERVRQAYLQRAKQF 177
Query: 226 PELVFVDNSEKSVHESSNDIVELIHNL 252
E + V + S+ E +VE++
Sbjct: 178 SERIRVVDGSLSLEEVRTAMVEVVEKF 204
>sp|P36590|KTHY_SCHPO Thymidylate kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=tmp1 PE=2 SV=2
Length = 210
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 50/218 (22%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIM-------SLREKFDAHDSL 107
LIV EGLD GKS Q + KL KA L P + L+E +D +
Sbjct: 9 LIVIEGLDRSGKSTQCQLLVDKLISQHEKAELFKFPDRTTAIGKKIDDYLKESVQLNDQV 68
Query: 108 LRRAYYSLGNYIAAQDIKQDLQKQ-PVVMDRFWHSTSAY----GMANELVKNSDLKLPDE 162
+ +S + Q I + + K ++DR+ S A+ G+ E K+ D LP
Sbjct: 69 I-HLLFSANRWETIQYIYEQINKGVTCILDRYAFSGIAFSAAKGLDWEWCKSPDRGLP-- 125
Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLS----RRKNFTLEENELKK----NAKFRE 214
+PDLVI+L V I R R + ++E LK +FRE
Sbjct: 126 ------------RPDLVIFLNVDPRIAATRGQYGEERYEKIEMQEKVLKNFQRLQKEFRE 173
Query: 215 LLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
E + +D S S+ + + IV+L+ N+
Sbjct: 174 ---------EGLEFITLDAS-SSLEDVHSQIVDLVSNV 201
>sp|Q1QLT8|KTHY_NITHX Thymidylate kinase OS=Nitrobacter hamburgensis (strain X14 / DSM
10229) GN=tmk PE=3 SV=1
Length = 230
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 88/203 (43%), Gaps = 24/203 (11%)
Query: 60 LIVFEGLDGCGKSHTSQTVAK-----KLKASLKSTPPSSIMS--LREKFDAHDSLLRRAY 112
I FEG +G GKS +A+ KL+A + P S + +R + L AY
Sbjct: 15 FITFEGGEGSGKSTQINILAERLNAAKLRAIVTREPGGSPGAEIIRHLVLSGMGKLLGAY 74
Query: 113 YSLGNYIAAQD------IKQDLQKQP-VVMDRFWHSTSAY-GMANELVKNSDLKLPDEDD 164
+ AA+D IK L++ V+ DRF ST AY G ++ LP +
Sbjct: 75 AETLLFAAARDDHVHTVIKPALEQGIWVLCDRFADSTRAYQGRLGDV-------LPGVLN 127
Query: 165 DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM- 223
+ +KPDL + L V I +QR + R+ + ++ F + L YR++
Sbjct: 128 ALERVTIGDLKPDLTVILDVPVEIGMQRAAVRRGSGAPDRFEAEDVAFHQKLRDAYRDIA 187
Query: 224 -NNPELVFVDNSEKSVHESSNDI 245
++P+ V ++ V+ + +
Sbjct: 188 ASDPQRCVVIDANADVNTVAAGV 210
>sp|Q8EU53|KTHY_OCEIH Thymidylate kinase OS=Oceanobacillus iheyensis (strain DSM 14371 /
JCM 11309 / KCTC 3954 / HTE831) GN=tmk PE=3 SV=1
Length = 225
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 95/217 (43%), Gaps = 45/217 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS----LKSTPPSSIMSLREKFDA------HDSLLR 109
I FEG +G GK+ Q + +KL A +++ P I + EK + H +
Sbjct: 5 FITFEGGEGAGKTTVIQHIFQKLIAQGIDVIQTREPGGI-KISEKIRSIIHDPEHLEMEE 63
Query: 110 RAYYSLGNYIAAQDIKQDL---------QKQPVVMDRFWHSTSAY-GMANELVKNSDLKL 159
R L Y AA+ +Q L Q + V+ DRF S+ AY G A L
Sbjct: 64 RTEALL--YAAAR--RQHLVEKVFPALEQGKVVLCDRFVDSSLAYQGYARGL-------- 111
Query: 160 PDEDDDIYSWP----KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELK-KNAKFRE 214
D++Y+ +D M PDL ++ + L+R++ KN E N L +N +F E
Sbjct: 112 --GIDEVYAINHFVIQDCM-PDLTLFFDIEPKKGLERIAANKN--RERNRLDLENMQFHE 166
Query: 215 LLTTIYRNM--NNPELVFVDNSEKSVHESSNDIVELI 249
+ Y+ + PE + +E+++ D +E+I
Sbjct: 167 AVYEGYQKVIARFPERIKTIQAEQALEAVEQDTMEII 203
>sp|A2RG70|KTHY_STRPG Thymidylate kinase OS=Streptococcus pyogenes serotype M5 (strain
Manfredo) GN=tmk PE=3 SV=1
Length = 211
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 33/156 (21%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFD-AHDSLLRRAYYSLGN- 117
LI EG DG GK+ TV ++L LK I++ RE A +R + +
Sbjct: 6 LITVEGPDGAGKT----TVLEQLIPPLKQKVAQEILTTREPGGVAISEYIRELILDINHT 61
Query: 118 ----------YIAAQDIKQDL---------QKQPVVMDRFWHSTSAYGMANELVKNSDLK 158
YIAA+ +Q L Q V +DRF S+ AY A + +D++
Sbjct: 62 TMDPKTELLLYIAAR--RQHLVEKVLPALEAGQLVFIDRFIDSSVAYQGAGRGLIKADIQ 119
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLS 194
+E + D ++PDL +Y V I L R++
Sbjct: 120 WLNE------FATDGLEPDLTLYFDVPSEIGLARIN 149
>sp|Q8P2B1|KTHY_STRP8 Thymidylate kinase OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=tmk PE=3 SV=1
Length = 211
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 33/156 (21%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFD-AHDSLLRRAYYSLGN- 117
LI EG DG GK+ TV ++L LK I++ RE A +R + +
Sbjct: 6 LITVEGPDGAGKT----TVLEQLIPPLKQKVAQEILTTREPGGVAISEYIRELILDINHT 61
Query: 118 ----------YIAAQDIKQDL---------QKQPVVMDRFWHSTSAYGMANELVKNSDLK 158
YIAA+ +Q L Q V +DRF S+ AY A + +D++
Sbjct: 62 TMDPKTELLLYIAAR--RQHLVEKVLPALEAGQLVFIDRFIDSSVAYQGAGRGLIKADIQ 119
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLS 194
+E + D ++PDL +Y V I L R++
Sbjct: 120 WLNE------FATDGLEPDLTLYFDVPSEIGLARIN 149
>sp|A1W6N2|KTHY_ACISJ Thymidylate kinase OS=Acidovorax sp. (strain JS42) GN=tmk PE=3 SV=1
Length = 217
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 27/155 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA-----SLKSTPPSSIMS--LREKF--DAHDSLLRR 110
I FEG+DG GKS +A+ L+A +L P + ++ LRE D+ D+L
Sbjct: 6 FITFEGIDGAGKSSHIDALAQALRAAGHTVALTREPGGTPLAEKLREMLLHDSMDALTE- 64
Query: 111 AYYSLGNYIAAQD-----IKQDLQKQPVVM-DRFWHSTSAYGMANELVKNSDLKLPDEDD 164
+L + A +D I+ L + VV+ DRF +T AY A + DL++ +
Sbjct: 65 ---ALLVFAARRDHLRCVIEPALARGEVVLCDRFTDATFAYQGAG---RGFDLEVLSYME 118
Query: 165 DI----YSWPKDLMK-PDLVIYLTVSEAIRLQRLS 194
+ DLM+ PDL ++ V + QRLS
Sbjct: 119 RLAQTGVGLQPDLMRNPDLTLWFDVPPEVAAQRLS 153
>sp|B5Y7S6|KTHY_COPPD Thymidylate kinase OS=Coprothermobacter proteolyticus (strain ATCC
35245 / DSM 5265 / BT) GN=tmk PE=3 SV=1
Length = 193
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 74/183 (40%), Gaps = 37/183 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--------- 110
IV EG+DGCGKS TVA L A + P + E D L R
Sbjct: 2 FIVVEGIDGCGKS----TVASLLAAEIGKKRP--VFHTFEPGHVRDGLYRELIMENVDNP 55
Query: 111 -AYYSLGNYIAAQDIKQDL-----QKQPVVMDRFWHSTSAY-----GMANELVKNSDLKL 159
+L A+ +K+ + + + VV +R+ ST AY G+ EL+ +
Sbjct: 56 FVVAALFTIDRAEHVKKMIKPALAKGEWVVCERYADSTLAYQGYGMGLDKELINRMN--- 112
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTI 219
++ I D + PD + YL + + L RL ++ LE L+ + RE I
Sbjct: 113 ---EEAI-----DGLWPDKIFYLDIEPHLALARLQNKEKDALEGQGLEFLQRVREGYEEI 164
Query: 220 YRN 222
R
Sbjct: 165 ART 167
>sp|A0Q893|KTHY_FRATN Thymidylate kinase OS=Francisella tularensis subsp. novicida
(strain U112) GN=tmk PE=3 SV=1
Length = 209
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSI--------MSLREKFDAH--- 104
IV EGLDG GKS V K L+ A++ + P + L K+D
Sbjct: 5 FIVIEGLDGAGKSTAISFVRKYLEKNNLAAIYTREPGGTKIAEELRNLVLHNKYDEEIHS 64
Query: 105 DSLLRRAYYSLGNY---IAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
DS L Y + + A +++ + VV DRF+ S+ AY V+ S K+
Sbjct: 65 DSELLMIYAGRVQHYRNLIAPALEKGIN---VVSDRFYWSSMAYQGGGRGVELS--KIRA 119
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSR 195
+D+ + +PDLVIYL + + LQR +
Sbjct: 120 LNDNFLNG----CEPDLVIYLDIDPILGLQRAQK 149
>sp|B2SF22|KTHY_FRATM Thymidylate kinase OS=Francisella tularensis subsp. mediasiatica
(strain FSC147) GN=tmk PE=3 SV=1
Length = 209
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSI--------MSLREKFDAH--- 104
IV EGLDG GKS V K L+ A++ + P + L K+D
Sbjct: 5 FIVIEGLDGAGKSTAISFVRKYLEKNNLAAIYTREPGGTKIAEELRNLVLHNKYDEEIHS 64
Query: 105 DSLLRRAYYSLGNY---IAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
DS L Y + + A +++ + VV DRF+ S+ AY V+ S K+
Sbjct: 65 DSELLMIYAGRVQHYRNLIAPALEKGIN---VVSDRFYWSSMAYQGGGRGVELS--KIRA 119
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSR 195
+D+ + +PDLVIYL + + LQR +
Sbjct: 120 LNDNFLNG----CEPDLVIYLDIDPILGLQRAQK 149
>sp|A8GPJ0|KTHY_RICAH Thymidylate kinase OS=Rickettsia akari (strain Hartford) GN=tmk
PE=3 SV=1
Length = 203
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 23/151 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS---LKSTPPSSIMSLREKFDA---HDSL-----L 108
I FEG DG GKS +Q + + LK+ + T ++ EK A H+SL L
Sbjct: 9 FITFEGGDGIGKSTQAQMLYEYLKSQNTHVILTREVGGTAVAEKMRAILVHESLLPMSEL 68
Query: 109 RRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168
+A + +++A + I V+ DRF ST+ Y L+L + D +Y+
Sbjct: 69 LQAMAARYDHMARKIIPALQDGHVVICDRFIDSTACY---------QGLELENGIDLVYN 119
Query: 169 WPKDLMK---PDLVIYLTVSEAIRLQRLSRR 196
K LM P++ ++ V ++R++ R
Sbjct: 120 LHKILMPSLMPEITFFIDVEPDTAIERVNSR 150
>sp|Q3AS37|KTHY_CHLCH Thymidylate kinase OS=Chlorobium chlorochromatii (strain CaD3)
GN=tmk PE=3 SV=1
Length = 222
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 33/163 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK--STPPSSIMSLRE-----KFDAHDSLL---R 109
LI FEG+DG GKS T KL A LK STP ++SLRE ++ SLL R
Sbjct: 2 LITFEGIDGAGKS----TQVAKLVAYLKQQSTP---LLSLREPGGTPTAESIRSLLLDNR 54
Query: 110 RAYYSLGNYIAAQDIKQDL----------QKQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
++ + + + +L + + V++DRF+ ST+AY + L
Sbjct: 55 KSITPIAELLLFSASRAELVETLIRPALAEGKTVILDRFFDSTTAYQGHGRGISLEQLH- 113
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE 202
I + + PD+ YL + L+R R L+
Sbjct: 114 -----SIIALSTGDLLPDVTFYLDLEPEEALRRAFSRSGLPLD 151
>sp|A4IW74|KTHY_FRATW Thymidylate kinase OS=Francisella tularensis subsp. tularensis
(strain WY96-3418) GN=tmk PE=3 SV=1
Length = 209
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSI--------MSLREKFDAH--- 104
IV EGLDG GKS V K L+ A++ + P + L K+D
Sbjct: 5 FIVIEGLDGAGKSTAISFVRKYLEKNNLAAIYTREPGGTKIAEELRNLVLHNKYDEEIHS 64
Query: 105 DSLLRRAYYSLGNY---IAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
DS L Y + + A +++ + VV DRF+ S+ AY V+ S K+
Sbjct: 65 DSELLMIYAGRVQHYRNLIAPALEKGIN---VVSDRFYWSSMAYQGGGRGVELS--KIRA 119
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSR 195
+D+ + +PDLVIYL + + LQR +
Sbjct: 120 LNDNFLNG----CEPDLVIYLDIDPILGLQRAQK 149
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,775,740
Number of Sequences: 539616
Number of extensions: 3701794
Number of successful extensions: 10741
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 239
Number of HSP's that attempted gapping in prelim test: 10592
Number of HSP's gapped (non-prelim): 268
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)