Query psy16563
Match_columns 259
No_of_seqs 231 out of 2029
Neff 8.9
Searched_HMMs 46136
Date Sat Aug 17 00:23:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0125 Tmk Thymidylate kinase 100.0 5.8E-27 1.3E-31 191.8 19.8 184 60-253 5-205 (208)
2 PRK07933 thymidylate kinase; V 99.9 1.2E-24 2.5E-29 180.3 16.0 186 59-249 1-211 (213)
3 PRK13973 thymidylate kinase; P 99.9 3.5E-24 7.6E-29 177.7 18.2 187 60-254 5-209 (213)
4 PLN02924 thymidylate kinase 99.9 1.1E-23 2.4E-28 175.0 19.5 177 58-252 16-204 (220)
5 PRK13976 thymidylate kinase; P 99.9 3.7E-23 8E-28 170.6 18.4 182 59-254 1-204 (209)
6 PF02223 Thymidylate_kin: Thym 99.9 2.7E-23 5.8E-28 168.9 14.4 170 63-245 1-186 (186)
7 PRK13975 thymidylate kinase; P 99.9 4.6E-22 9.9E-27 162.8 19.2 180 59-254 3-193 (196)
8 PRK00698 tmk thymidylate kinas 99.9 7.9E-22 1.7E-26 162.3 19.3 184 59-252 4-203 (205)
9 PRK13974 thymidylate kinase; P 99.9 6.4E-22 1.4E-26 164.1 18.4 182 60-252 5-207 (212)
10 KOG3327|consensus 99.9 1.4E-21 2.9E-26 153.1 15.3 179 54-253 3-197 (208)
11 cd01672 TMPK Thymidine monopho 99.9 1.1E-20 2.4E-25 154.3 19.2 182 59-250 1-199 (200)
12 cd02030 NDUO42 NADH:Ubiquinone 99.9 3E-21 6.6E-26 160.8 15.8 182 60-247 1-217 (219)
13 TIGR00041 DTMP_kinase thymidyl 99.9 4.6E-20 1E-24 150.8 18.4 176 59-245 4-195 (195)
14 cd01673 dNK Deoxyribonucleosid 99.9 1.2E-20 2.6E-25 154.1 13.3 176 60-239 1-190 (193)
15 COG1428 Deoxynucleoside kinase 99.8 9.6E-20 2.1E-24 146.7 15.1 173 58-235 4-189 (216)
16 KOG3877|consensus 99.7 1.4E-16 3E-21 132.4 15.5 187 59-248 72-294 (393)
17 TIGR01360 aden_kin_iso1 adenyl 99.7 1.2E-15 2.7E-20 123.6 18.9 164 58-251 3-187 (188)
18 TIGR01359 UMP_CMP_kin_fam UMP- 99.7 3.3E-15 7.1E-20 120.9 17.9 163 60-249 1-182 (183)
19 COG1102 Cmk Cytidylate kinase 99.7 4.5E-15 9.7E-20 114.5 17.2 162 59-254 1-175 (179)
20 PRK14532 adenylate kinase; Pro 99.7 7.1E-15 1.5E-19 119.5 16.9 166 60-251 2-187 (188)
21 COG1936 Predicted nucleotide k 99.7 2.6E-15 5.6E-20 117.3 13.4 150 59-251 1-156 (180)
22 PRK14531 adenylate kinase; Pro 99.6 1.4E-14 3E-19 117.4 17.0 165 60-249 4-182 (183)
23 PLN02200 adenylate kinase fami 99.6 3.5E-14 7.6E-19 119.2 19.9 168 57-254 42-227 (234)
24 PRK13808 adenylate kinase; Pro 99.6 1E-14 2.2E-19 127.2 16.8 167 60-253 2-195 (333)
25 PRK14527 adenylate kinase; Pro 99.6 6.1E-14 1.3E-18 114.4 19.4 165 58-249 6-190 (191)
26 PHA03132 thymidine kinase; Pro 99.6 7.9E-15 1.7E-19 135.6 15.1 156 59-223 258-445 (580)
27 COG0703 AroK Shikimate kinase 99.6 9.7E-15 2.1E-19 115.2 12.4 157 61-252 5-169 (172)
28 PRK02496 adk adenylate kinase; 99.6 1.8E-13 3.8E-18 110.9 19.2 161 60-250 3-183 (184)
29 KOG3079|consensus 99.6 8.3E-14 1.8E-18 109.7 16.3 165 57-251 7-193 (195)
30 PRK14528 adenylate kinase; Pro 99.6 1.2E-13 2.6E-18 112.2 17.2 166 60-248 3-185 (186)
31 PRK14530 adenylate kinase; Pro 99.6 1.6E-13 3.4E-18 114.0 17.6 164 60-252 5-214 (215)
32 PLN02674 adenylate kinase 99.6 1.7E-13 3.8E-18 115.0 17.3 165 59-250 32-244 (244)
33 TIGR01351 adk adenylate kinase 99.6 1.9E-13 4.2E-18 113.1 17.4 160 61-249 2-209 (210)
34 PRK03839 putative kinase; Prov 99.6 1.6E-13 3.4E-18 110.8 16.4 151 60-252 2-154 (180)
35 PRK00279 adk adenylate kinase; 99.6 2.4E-13 5.2E-18 112.9 17.0 167 60-251 2-214 (215)
36 PRK13949 shikimate kinase; Pro 99.6 7.9E-14 1.7E-18 111.5 12.8 161 61-248 4-168 (169)
37 COG4088 Predicted nucleotide k 99.5 2.7E-13 5.9E-18 108.7 13.7 165 59-250 2-172 (261)
38 PRK04182 cytidylate kinase; Pr 99.5 1.3E-12 2.8E-17 105.1 17.8 160 59-252 1-174 (180)
39 PRK14529 adenylate kinase; Pro 99.5 1E-12 2.2E-17 109.1 17.3 116 60-197 2-127 (223)
40 PLN02459 probable adenylate ki 99.5 2.2E-12 4.7E-17 109.0 19.2 169 54-253 25-253 (261)
41 PRK08233 hypothetical protein; 99.5 8.4E-13 1.8E-17 106.4 15.7 162 59-252 4-178 (182)
42 PRK05057 aroK shikimate kinase 99.5 8.7E-13 1.9E-17 105.8 15.4 160 60-251 6-171 (172)
43 PRK03731 aroL shikimate kinase 99.5 2.5E-12 5.4E-17 102.9 17.1 159 61-251 5-170 (171)
44 PRK08154 anaerobic benzoate ca 99.5 9.8E-13 2.1E-17 115.0 15.9 196 15-253 99-303 (309)
45 TIGR03574 selen_PSTK L-seryl-t 99.5 8.4E-13 1.8E-17 112.1 14.8 162 60-251 1-169 (249)
46 PRK06762 hypothetical protein; 99.5 6E-13 1.3E-17 106.0 12.9 156 58-250 2-163 (166)
47 PRK00131 aroK shikimate kinase 99.5 3.8E-12 8.3E-17 101.7 17.4 166 58-254 4-174 (175)
48 PRK14526 adenylate kinase; Pro 99.5 4.8E-12 1E-16 104.6 18.2 162 60-252 2-210 (211)
49 PRK00625 shikimate kinase; Pro 99.5 2.7E-12 6E-17 102.8 16.2 162 60-249 2-171 (173)
50 cd00227 CPT Chloramphenicol (C 99.5 3.1E-12 6.7E-17 102.9 15.7 160 59-249 3-174 (175)
51 PRK13948 shikimate kinase; Pro 99.5 1.3E-12 2.8E-17 105.5 13.4 159 60-252 12-176 (182)
52 TIGR01313 therm_gnt_kin carboh 99.5 3.4E-12 7.3E-17 101.3 15.3 155 61-250 1-162 (163)
53 PRK00081 coaE dephospho-CoA ki 99.5 7.3E-12 1.6E-16 102.4 17.3 67 176-251 125-193 (194)
54 PRK14730 coaE dephospho-CoA ki 99.5 6.6E-12 1.4E-16 102.7 17.0 66 176-250 126-193 (195)
55 PRK10078 ribose 1,5-bisphospho 99.5 2.3E-12 4.9E-17 104.7 14.1 72 176-257 111-182 (186)
56 PRK04040 adenylate kinase; Pro 99.4 4.8E-12 1E-16 102.9 15.2 170 59-249 3-187 (188)
57 PLN02842 nucleotide kinase 99.4 3.9E-12 8.5E-17 116.2 16.2 161 63-253 2-204 (505)
58 KOG4235|consensus 99.4 2.2E-12 4.7E-17 102.4 12.5 165 61-236 25-219 (244)
59 TIGR02173 cyt_kin_arch cytidyl 99.4 1.3E-11 2.8E-16 98.4 17.2 157 59-249 1-170 (171)
60 cd01428 ADK Adenylate kinase ( 99.4 6.1E-12 1.3E-16 102.5 15.4 115 61-197 2-126 (194)
61 PRK13946 shikimate kinase; Pro 99.4 1.5E-11 3.3E-16 99.6 17.3 160 60-254 12-179 (184)
62 COG0283 Cmk Cytidylate kinase 99.4 1.7E-11 3.6E-16 99.5 16.9 30 59-88 5-34 (222)
63 PRK14733 coaE dephospho-CoA ki 99.4 8.8E-12 1.9E-16 102.2 15.6 71 176-252 129-199 (204)
64 PRK13947 shikimate kinase; Pro 99.4 1.4E-11 3E-16 98.5 16.3 157 61-251 4-168 (171)
65 PRK05541 adenylylsulfate kinas 99.4 1.3E-12 2.8E-17 105.1 10.2 161 59-251 8-172 (176)
66 PRK14732 coaE dephospho-CoA ki 99.4 1E-11 2.2E-16 101.6 15.4 70 176-252 122-191 (196)
67 PRK01184 hypothetical protein; 99.4 1.8E-11 3.9E-16 99.1 16.3 162 59-252 2-179 (184)
68 PRK14021 bifunctional shikimat 99.4 9.3E-12 2E-16 116.5 16.1 165 58-251 6-176 (542)
69 PTZ00451 dephospho-CoA kinase; 99.4 2.4E-11 5.2E-16 102.2 15.8 70 176-252 137-208 (244)
70 COG3265 GntK Gluconate kinase 99.4 4.6E-12 1E-16 96.5 10.3 150 64-252 1-160 (161)
71 COG0563 Adk Adenylate kinase a 99.4 1.4E-11 3.1E-16 99.0 13.5 161 60-249 2-177 (178)
72 PF01121 CoaE: Dephospho-CoA k 99.4 2.5E-11 5.5E-16 97.8 14.8 147 59-240 1-180 (180)
73 PRK14734 coaE dephospho-CoA ki 99.4 3.7E-11 8.1E-16 98.6 16.0 71 175-252 125-195 (200)
74 PRK06217 hypothetical protein; 99.4 7.9E-12 1.7E-16 101.2 11.6 158 60-254 3-182 (183)
75 COG0237 CoaE Dephospho-CoA kin 99.4 5.4E-11 1.2E-15 97.3 16.1 71 176-253 124-194 (201)
76 PLN02199 shikimate kinase 99.4 3.2E-11 7E-16 103.1 15.0 158 61-253 105-290 (303)
77 PF01202 SKI: Shikimate kinase 99.3 2.3E-11 4.9E-16 96.2 13.2 150 67-250 1-158 (158)
78 PLN02422 dephospho-CoA kinase 99.3 9.4E-11 2E-15 97.8 16.9 68 176-252 126-195 (232)
79 PTZ00088 adenylate kinase 1; P 99.3 9.9E-11 2.1E-15 97.9 17.1 109 59-197 7-131 (229)
80 PRK14731 coaE dephospho-CoA ki 99.3 1E-10 2.2E-15 96.7 16.5 68 176-252 134-203 (208)
81 PRK05480 uridine/cytidine kina 99.3 3E-11 6.5E-16 99.8 13.1 72 175-250 125-207 (209)
82 PRK13477 bifunctional pantoate 99.3 2.7E-11 6E-16 111.5 13.5 75 175-252 420-504 (512)
83 TIGR02322 phosphon_PhnN phosph 99.3 2.9E-11 6.2E-16 97.4 12.1 67 177-251 112-178 (179)
84 PRK08356 hypothetical protein; 99.3 1.7E-10 3.6E-15 94.4 16.0 75 177-252 116-193 (195)
85 cd00464 SK Shikimate kinase (S 99.3 1.3E-10 2.8E-15 91.1 14.7 145 61-239 2-153 (154)
86 PRK14738 gmk guanylate kinase; 99.3 2.9E-11 6.3E-16 99.8 10.9 68 176-252 123-195 (206)
87 cd02020 CMPK Cytidine monophos 99.3 2.1E-10 4.6E-15 89.0 14.1 103 60-196 1-103 (147)
88 TIGR00017 cmk cytidylate kinas 99.3 2.4E-10 5.3E-15 94.9 14.8 29 59-87 3-31 (217)
89 PRK09825 idnK D-gluconate kina 99.3 4.1E-10 9E-15 90.6 15.7 71 174-252 97-169 (176)
90 TIGR00152 dephospho-CoA kinase 99.3 3E-10 6.5E-15 92.4 15.0 64 176-246 124-187 (188)
91 PF00406 ADK: Adenylate kinase 99.2 2.1E-10 4.6E-15 89.9 13.4 111 63-195 1-122 (151)
92 cd02022 DPCK Dephospho-coenzym 99.2 2.7E-10 5.8E-15 91.9 14.2 28 60-88 1-28 (179)
93 KOG3220|consensus 99.2 4E-10 8.7E-15 90.1 14.6 158 59-252 2-195 (225)
94 PF13671 AAA_33: AAA domain; P 99.2 4.6E-11 9.9E-16 92.4 8.7 115 60-199 1-121 (143)
95 KOG3347|consensus 99.2 1.4E-10 3.1E-15 88.5 10.7 155 58-250 7-165 (176)
96 PRK11545 gntK gluconate kinase 99.2 5.6E-10 1.2E-14 88.7 14.1 71 174-252 89-161 (163)
97 KOG3354|consensus 99.2 8.6E-10 1.9E-14 84.7 14.0 162 60-251 14-188 (191)
98 PRK08118 topology modulation p 99.2 9E-11 1.9E-15 93.6 9.2 98 60-197 3-100 (167)
99 PRK03333 coaE dephospho-CoA ki 99.2 9.7E-10 2.1E-14 99.2 16.1 70 176-252 124-193 (395)
100 PRK11860 bifunctional 3-phosph 99.2 7.5E-10 1.6E-14 106.2 16.1 79 175-255 573-659 (661)
101 PF01712 dNK: Deoxynucleoside 99.2 1.1E-11 2.5E-16 96.6 3.1 116 129-252 18-145 (146)
102 COG3709 Uncharacterized compon 99.2 1.9E-10 4.2E-15 89.0 9.6 158 60-252 7-183 (192)
103 PF08433 KTI12: Chromatin asso 99.2 2.8E-10 6E-15 97.4 11.5 160 59-245 2-169 (270)
104 COG0529 CysC Adenylylsulfate k 99.2 1.8E-10 4E-15 90.5 9.4 160 58-253 23-193 (197)
105 cd02021 GntK Gluconate kinase 99.2 9E-10 1.9E-14 86.1 13.2 117 60-199 1-121 (150)
106 PRK13951 bifunctional shikimat 99.2 7.4E-10 1.6E-14 102.3 14.7 149 60-245 2-155 (488)
107 PHA02530 pseT polynucleotide k 99.2 3.4E-10 7.4E-15 98.6 11.9 116 59-199 3-126 (300)
108 PRK03846 adenylylsulfate kinas 99.1 4.4E-10 9.6E-15 92.1 10.9 74 178-256 124-197 (198)
109 COG0572 Udk Uridine kinase [Nu 99.1 1.1E-10 2.3E-15 95.6 7.1 172 58-236 8-192 (218)
110 PRK07667 uridine kinase; Provi 99.1 8.8E-10 1.9E-14 90.0 12.6 139 58-199 17-162 (193)
111 PRK14737 gmk guanylate kinase; 99.1 6.8E-10 1.5E-14 90.1 11.2 157 58-251 4-184 (186)
112 PRK05537 bifunctional sulfate 99.1 9.6E-10 2.1E-14 103.3 13.7 200 8-253 349-564 (568)
113 PRK00023 cmk cytidylate kinase 99.1 3.8E-09 8.3E-14 88.3 15.3 30 59-88 5-34 (225)
114 PTZ00301 uridine kinase; Provi 99.1 5.7E-10 1.2E-14 92.1 10.1 131 59-197 4-148 (210)
115 PHA03136 thymidine kinase; Pro 99.1 1.2E-09 2.7E-14 96.0 12.7 85 131-223 149-234 (378)
116 TIGR00235 udk uridine kinase. 99.1 5E-10 1.1E-14 92.4 9.5 181 59-250 7-203 (207)
117 TIGR00455 apsK adenylylsulfate 99.1 9E-10 1.9E-14 89.2 10.9 166 58-249 18-184 (184)
118 PRK00889 adenylylsulfate kinas 99.1 1.8E-09 4E-14 86.6 12.3 161 60-253 6-172 (175)
119 PRK09518 bifunctional cytidyla 99.1 2E-09 4.3E-14 104.2 14.5 78 176-256 155-236 (712)
120 PF07931 CPT: Chloramphenicol 99.1 9.6E-10 2.1E-14 87.9 9.9 156 60-249 3-173 (174)
121 COG2019 AdkA Archaeal adenylat 99.1 2.1E-08 4.6E-13 78.2 16.8 173 58-251 4-188 (189)
122 PRK06696 uridine kinase; Valid 99.1 1.3E-09 2.8E-14 91.1 11.1 29 56-84 20-48 (223)
123 PRK05416 glmZ(sRNA)-inactivati 99.1 1.8E-09 3.9E-14 93.2 12.1 75 176-251 86-160 (288)
124 TIGR03263 guanyl_kin guanylate 99.1 1E-09 2.2E-14 88.3 9.3 26 60-85 3-28 (180)
125 COG0194 Gmk Guanylate kinase [ 99.0 2.7E-09 5.9E-14 84.9 10.2 156 59-251 5-182 (191)
126 PRK00300 gmk guanylate kinase; 99.0 2.4E-09 5.3E-14 88.0 10.5 24 60-83 7-30 (205)
127 cd02023 UMPK Uridine monophosp 99.0 1.1E-09 2.4E-14 89.7 7.6 24 60-83 1-24 (198)
128 PRK06547 hypothetical protein; 99.0 2.5E-09 5.5E-14 85.6 8.6 32 57-88 14-45 (172)
129 PF00485 PRK: Phosphoribulokin 99.0 6.9E-10 1.5E-14 90.7 5.3 171 60-235 1-189 (194)
130 PRK12269 bifunctional cytidyla 98.9 4.3E-08 9.3E-13 95.7 16.6 76 174-252 205-286 (863)
131 PRK12339 2-phosphoglycerate ki 98.9 2.4E-08 5.2E-13 81.7 12.6 29 59-87 4-32 (197)
132 PRK07261 topology modulation p 98.9 4.8E-09 1E-13 84.0 8.1 99 60-197 2-100 (171)
133 PF01583 APS_kinase: Adenylyls 98.9 2.4E-09 5.1E-14 83.9 6.1 108 59-193 3-117 (156)
134 PF13238 AAA_18: AAA domain; P 98.9 5E-09 1.1E-13 79.2 7.8 22 61-82 1-22 (129)
135 PRK05506 bifunctional sulfate 98.9 1.7E-08 3.7E-13 96.6 11.9 167 58-251 460-628 (632)
136 PRK05439 pantothenate kinase; 98.9 5.9E-09 1.3E-13 90.6 7.6 31 54-84 82-112 (311)
137 COG0645 Predicted kinase [Gene 98.9 8.2E-08 1.8E-12 75.3 13.0 115 60-198 3-126 (170)
138 smart00072 GuKc Guanylate kina 98.8 4.3E-08 9.3E-13 79.4 11.1 159 60-252 4-183 (184)
139 PRK12338 hypothetical protein; 98.8 8.7E-08 1.9E-12 83.4 13.4 168 58-252 4-205 (319)
140 cd02025 PanK Pantothenate kina 98.8 7.1E-09 1.5E-13 86.4 5.6 24 60-83 1-24 (220)
141 cd02027 APSK Adenosine 5'-phos 98.8 4.8E-08 1E-12 76.4 9.8 24 60-83 1-24 (149)
142 PF13521 AAA_28: AAA domain; P 98.8 5.1E-08 1.1E-12 77.3 10.1 149 61-232 2-156 (163)
143 PLN02348 phosphoribulokinase 98.8 2.4E-08 5.2E-13 88.8 8.7 135 56-197 47-204 (395)
144 TIGR00554 panK_bact pantothena 98.8 4.2E-08 9E-13 84.7 8.9 27 57-83 61-87 (290)
145 cd02024 NRK1 Nicotinamide ribo 98.7 1.2E-08 2.5E-13 82.7 4.7 24 60-83 1-24 (187)
146 TIGR03575 selen_PSTK_euk L-ser 98.7 4.4E-08 9.5E-13 86.2 8.4 24 60-83 1-24 (340)
147 cd02028 UMPK_like Uridine mono 98.7 1.9E-08 4.2E-13 81.1 5.2 134 60-197 1-140 (179)
148 PRK09270 nucleoside triphospha 98.7 7E-08 1.5E-12 80.9 7.9 29 57-85 32-60 (229)
149 PLN02318 phosphoribulokinase/u 98.7 7.3E-08 1.6E-12 89.6 8.4 163 58-233 65-238 (656)
150 PRK07429 phosphoribulokinase; 98.7 2.7E-07 5.9E-12 81.2 11.1 135 56-197 6-146 (327)
151 cd02026 PRK Phosphoribulokinas 98.6 1.2E-07 2.5E-12 81.6 8.3 25 60-84 1-25 (273)
152 PHA03135 thymidine kinase; Pro 98.6 4.4E-07 9.5E-12 79.0 11.8 153 58-222 10-201 (343)
153 TIGR03707 PPK2_P_aer polyphosp 98.6 8E-07 1.7E-11 74.1 12.3 157 58-236 31-206 (230)
154 PHA03134 thymidine kinase; Pro 98.6 1.5E-06 3.2E-11 75.7 13.9 152 58-223 13-206 (340)
155 PF06414 Zeta_toxin: Zeta toxi 98.6 6.6E-07 1.4E-11 73.4 11.1 121 58-197 15-142 (199)
156 COG2074 2-phosphoglycerate kin 98.6 4.5E-06 9.7E-11 69.5 15.1 64 14-87 55-118 (299)
157 PRK12337 2-phosphoglycerate ki 98.6 1.4E-06 3E-11 79.2 13.2 30 57-86 254-283 (475)
158 PLN02772 guanylate kinase 98.6 9.8E-07 2.1E-11 78.6 12.0 25 59-83 136-160 (398)
159 TIGR01663 PNK-3'Pase polynucle 98.5 3.9E-07 8.6E-12 84.6 9.7 104 55-198 366-470 (526)
160 TIGR03708 poly_P_AMP_trns poly 98.5 7.7E-07 1.7E-11 81.8 11.5 173 56-250 38-231 (493)
161 cd02029 PRK_like Phosphoribulo 98.5 9.2E-08 2E-12 81.0 5.1 26 60-85 1-26 (277)
162 KOG3062|consensus 98.5 1.3E-06 2.8E-11 71.5 10.9 142 59-223 2-145 (281)
163 PHA03138 thymidine kinase; Pro 98.5 3.2E-06 7E-11 73.7 13.9 26 58-83 12-37 (340)
164 PF00625 Guanylate_kin: Guanyl 98.5 3.1E-06 6.6E-11 68.4 12.2 26 60-85 4-29 (183)
165 PRK15453 phosphoribulokinase; 98.5 1.8E-07 4E-12 79.8 5.0 28 57-84 4-31 (290)
166 COG4639 Predicted kinase [Gene 98.5 6.9E-06 1.5E-10 63.6 13.0 114 59-198 3-119 (168)
167 PF13207 AAA_17: AAA domain; P 98.5 1.3E-07 2.9E-12 70.9 3.5 29 60-88 1-29 (121)
168 PRK08099 bifunctional DNA-bind 98.5 2.6E-06 5.6E-11 77.0 12.3 176 55-253 216-394 (399)
169 PF03668 ATP_bind_2: P-loop AT 98.5 1.8E-06 4E-11 73.6 10.5 72 176-251 82-156 (284)
170 TIGR03709 PPK2_rel_1 polyphosp 98.5 2.5E-06 5.4E-11 72.5 11.4 173 58-252 56-249 (264)
171 PRK04220 2-phosphoglycerate ki 98.4 2.1E-05 4.5E-10 68.0 16.8 29 58-86 92-120 (301)
172 PF03976 PPK2: Polyphosphate k 98.4 1.5E-06 3.2E-11 72.5 7.7 171 58-250 31-222 (228)
173 COG2326 Uncharacterized conser 98.3 1.4E-05 3E-10 66.5 12.3 171 54-253 70-265 (270)
174 PHA03133 thymidine kinase; Pro 98.3 2.3E-05 5E-10 68.7 14.2 134 58-200 40-218 (368)
175 KOG3078|consensus 98.3 2E-05 4.4E-10 65.4 13.1 166 61-253 18-226 (235)
176 PF13189 Cytidylate_kin2: Cyti 98.3 2.2E-05 4.7E-10 63.3 12.6 29 60-88 1-29 (179)
177 COG1072 CoaA Panthothenate kin 98.3 5.3E-06 1.2E-10 70.1 8.8 27 58-84 82-108 (283)
178 COG1219 ClpX ATP-dependent pro 98.2 6.6E-07 1.4E-11 76.8 2.3 74 11-87 49-126 (408)
179 COG2884 FtsE Predicted ATPase 98.2 8.7E-07 1.9E-11 70.9 2.2 51 31-83 3-53 (223)
180 PHA00729 NTP-binding motif con 98.1 1.2E-05 2.7E-10 66.7 8.6 26 58-83 17-42 (226)
181 PRK06761 hypothetical protein; 98.1 0.00028 6.1E-09 60.7 17.1 27 59-85 4-30 (282)
182 TIGR03708 poly_P_AMP_trns poly 98.1 3.6E-05 7.9E-10 70.9 11.9 170 57-250 298-490 (493)
183 KOG0635|consensus 98.1 2.1E-05 4.5E-10 60.6 8.6 29 58-86 31-59 (207)
184 COG1116 TauB ABC-type nitrate/ 98.1 1.8E-06 4E-11 71.9 2.9 39 43-83 16-54 (248)
185 PF00693 Herpes_TK: Thymidine 98.1 1.8E-05 3.9E-10 67.4 8.4 81 131-222 103-187 (281)
186 PF08303 tRNA_lig_kinase: tRNA 98.1 2.1E-05 4.5E-10 61.7 8.0 29 61-89 2-31 (168)
187 COG4619 ABC-type uncharacteriz 98.1 2.6E-06 5.7E-11 67.0 3.0 38 44-83 17-54 (223)
188 COG1660 Predicted P-loop-conta 98.1 3.7E-05 8.1E-10 64.4 9.8 70 179-251 86-157 (286)
189 PLN02165 adenylate isopentenyl 98.1 4.4E-05 9.5E-10 66.9 10.8 31 58-88 43-73 (334)
190 KOG0744|consensus 98.1 0.00015 3.2E-09 62.8 13.6 49 59-107 178-233 (423)
191 COG3839 MalK ABC-type sugar tr 98.1 7.3E-07 1.6E-11 78.2 -0.5 44 37-83 11-54 (338)
192 COG3638 ABC-type phosphate/pho 98.0 1.1E-06 2.4E-11 72.6 -0.3 50 32-83 6-55 (258)
193 COG3842 PotA ABC-type spermidi 98.0 1.2E-06 2.6E-11 77.3 -0.2 46 34-82 10-55 (352)
194 cd02019 NK Nucleoside/nucleoti 98.0 5.9E-06 1.3E-10 55.8 3.2 23 60-82 1-23 (69)
195 COG1126 GlnQ ABC-type polar am 98.0 4.9E-06 1.1E-10 68.0 3.0 44 34-80 7-50 (240)
196 TIGR01526 nadR_NMN_Atrans nico 97.9 0.00019 4.1E-09 63.3 12.6 85 59-147 163-250 (325)
197 COG1136 SalX ABC-type antimicr 97.9 6.2E-06 1.4E-10 68.4 3.0 36 44-81 19-54 (226)
198 PF01591 6PF2K: 6-phosphofruct 97.9 0.00017 3.6E-09 60.0 11.4 43 59-101 13-55 (222)
199 COG1120 FepC ABC-type cobalami 97.9 6.3E-06 1.4E-10 69.7 2.1 40 43-84 15-54 (258)
200 COG3911 Predicted ATPase [Gene 97.9 0.00057 1.2E-08 52.7 12.3 167 58-245 9-179 (183)
201 KOG0733|consensus 97.8 3.2E-05 6.8E-10 71.8 6.1 49 53-103 220-277 (802)
202 COG4987 CydC ABC-type transpor 97.8 5E-06 1.1E-10 76.0 0.4 52 31-84 338-390 (573)
203 KOG1384|consensus 97.8 0.00025 5.4E-09 61.4 10.3 32 58-89 7-38 (348)
204 PF00004 AAA: ATPase family as 97.8 2.2E-05 4.7E-10 59.3 3.3 28 61-88 1-28 (132)
205 KOG3308|consensus 97.7 0.00012 2.6E-09 59.1 7.3 28 58-85 4-31 (225)
206 COG1117 PstB ABC-type phosphat 97.7 1.7E-05 3.7E-10 64.8 2.3 39 42-82 19-57 (253)
207 TIGR00390 hslU ATP-dependent p 97.7 7.6E-05 1.7E-09 67.3 6.4 28 61-88 50-77 (441)
208 COG1124 DppF ABC-type dipeptid 97.7 2.4E-05 5.2E-10 65.0 2.8 37 45-83 22-58 (252)
209 TIGR01166 cbiO cobalt transpor 97.7 2.8E-05 6.1E-10 63.1 2.8 36 45-82 7-42 (190)
210 KOG4238|consensus 97.7 8.9E-05 1.9E-09 64.8 5.7 161 60-252 52-221 (627)
211 cd03226 ABC_cobalt_CbiO_domain 97.7 1E-05 2.2E-10 66.5 -0.0 36 45-82 15-50 (205)
212 PRK10070 glycine betaine trans 97.7 3.2E-05 7E-10 70.0 3.2 75 1-83 1-79 (400)
213 COG1125 OpuBA ABC-type proline 97.6 1.7E-05 3.7E-10 66.4 0.9 48 33-83 5-52 (309)
214 COG1121 ZnuC ABC-type Mn/Zn tr 97.6 3.1E-05 6.8E-10 65.3 2.5 45 36-83 11-55 (254)
215 cd03235 ABC_Metallic_Cations A 97.6 1.5E-05 3.4E-10 65.8 0.6 36 45-82 14-49 (213)
216 COG0466 Lon ATP-dependent Lon 97.6 9.3E-05 2E-09 70.0 5.7 70 9-89 309-381 (782)
217 PRK05342 clpX ATP-dependent pr 97.6 0.00012 2.6E-09 66.5 6.3 75 11-88 59-138 (412)
218 COG3896 Chloramphenicol 3-O-ph 97.6 0.0028 6.1E-08 49.4 12.7 160 59-250 24-204 (205)
219 KOG0058|consensus 97.6 1.5E-05 3.3E-10 75.2 0.4 52 31-84 467-520 (716)
220 PRK09169 hypothetical protein; 97.6 0.00035 7.7E-09 73.1 10.0 140 61-235 2113-2265(2316)
221 COG4525 TauB ABC-type taurine 97.6 4.8E-05 1E-09 61.4 3.1 37 45-83 20-56 (259)
222 cd03238 ABC_UvrA The excision 97.6 4E-05 8.6E-10 61.6 2.6 33 45-79 10-42 (176)
223 cd00820 PEPCK_HprK Phosphoenol 97.6 3.2E-05 7E-10 56.7 1.8 29 49-79 8-36 (107)
224 PRK15177 Vi polysaccharide exp 97.6 4.1E-05 8.9E-10 63.4 2.6 35 46-82 3-37 (213)
225 PF00005 ABC_tran: ABC transpo 97.6 2.1E-05 4.6E-10 60.1 0.7 32 50-83 5-36 (137)
226 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.6 4.2E-05 9E-10 63.4 2.4 38 44-83 18-55 (218)
227 TIGR02673 FtsE cell division A 97.6 5E-05 1.1E-09 62.7 2.8 36 45-82 17-52 (214)
228 TIGR02315 ABC_phnC phosphonate 97.6 5.2E-05 1.1E-09 63.9 2.9 37 44-82 16-52 (243)
229 TIGR00960 3a0501s02 Type II (G 97.6 4.3E-05 9.2E-10 63.3 2.3 37 45-83 18-54 (216)
230 TIGR02868 CydC thiol reductant 97.5 3.6E-05 7.9E-10 72.3 2.1 45 37-83 342-386 (529)
231 cd03261 ABC_Org_Solvent_Resist 97.5 4.2E-05 9.2E-10 64.2 2.3 37 45-83 15-51 (235)
232 KOG0707|consensus 97.5 0.0025 5.4E-08 52.7 12.5 29 56-84 35-63 (231)
233 cd00071 GMPK Guanosine monopho 97.5 5.5E-05 1.2E-09 58.2 2.7 25 60-84 1-25 (137)
234 PF05496 RuvB_N: Holliday junc 97.5 0.00011 2.4E-09 60.8 4.6 31 58-88 50-80 (233)
235 cd03259 ABC_Carb_Solutes_like 97.5 5.5E-05 1.2E-09 62.5 2.9 36 45-82 15-50 (213)
236 cd03260 ABC_PstB_phosphate_tra 97.5 4.8E-05 1E-09 63.5 2.5 36 45-82 15-50 (227)
237 TIGR00150 HI0065_YjeE ATPase, 97.5 9.7E-05 2.1E-09 56.4 3.9 32 60-91 24-56 (133)
238 cd03263 ABC_subfamily_A The AB 97.5 5.1E-05 1.1E-09 63.0 2.6 37 45-83 17-53 (220)
239 cd03257 ABC_NikE_OppD_transpor 97.5 6.1E-05 1.3E-09 62.8 3.0 37 44-82 19-55 (228)
240 cd03225 ABC_cobalt_CbiO_domain 97.5 5.3E-05 1.1E-09 62.5 2.5 37 45-83 16-52 (211)
241 cd03219 ABC_Mj1267_LivG_branch 97.5 5.4E-05 1.2E-09 63.5 2.6 36 45-82 15-50 (236)
242 cd03292 ABC_FtsE_transporter F 97.5 5E-05 1.1E-09 62.7 2.3 36 45-82 16-51 (214)
243 cd03256 ABC_PhnC_transporter A 97.5 5.9E-05 1.3E-09 63.5 2.7 36 45-82 16-51 (241)
244 cd03218 ABC_YhbG The ABC trans 97.5 6.7E-05 1.5E-09 62.8 3.0 36 45-82 15-50 (232)
245 TIGR03608 L_ocin_972_ABC putat 97.5 5.7E-05 1.2E-09 62.0 2.5 37 45-83 13-49 (206)
246 cd03262 ABC_HisP_GlnQ_permease 97.5 6.8E-05 1.5E-09 61.9 3.0 37 45-83 15-51 (213)
247 cd03293 ABC_NrtD_SsuB_transpor 97.5 5.4E-05 1.2E-09 62.9 2.3 36 45-82 19-54 (220)
248 TIGR01978 sufC FeS assembly AT 97.5 6.4E-05 1.4E-09 63.3 2.8 36 45-82 15-50 (243)
249 TIGR00382 clpX endopeptidase C 97.5 0.00018 3.9E-09 65.2 5.8 74 11-87 65-145 (413)
250 cd03258 ABC_MetN_methionine_tr 97.5 6.4E-05 1.4E-09 63.0 2.8 38 44-83 19-56 (233)
251 cd03301 ABC_MalK_N The N-termi 97.5 6.2E-05 1.3E-09 62.1 2.6 37 45-83 15-51 (213)
252 cd03224 ABC_TM1139_LivF_branch 97.5 5.3E-05 1.1E-09 62.9 2.2 37 45-83 15-51 (222)
253 cd03265 ABC_DrrA DrrA is the A 97.5 6.8E-05 1.5E-09 62.3 2.8 36 45-82 15-50 (220)
254 cd03294 ABC_Pro_Gly_Bertaine T 97.5 8.2E-05 1.8E-09 63.9 3.3 50 31-83 26-75 (269)
255 PRK05201 hslU ATP-dependent pr 97.5 0.00032 6.9E-09 63.4 7.1 28 61-88 53-80 (443)
256 COG3172 NadR Predicted ATPase/ 97.5 0.0019 4.1E-08 50.5 10.4 29 59-87 9-37 (187)
257 cd03269 ABC_putative_ATPase Th 97.5 5.7E-05 1.2E-09 62.3 2.2 36 45-82 15-50 (210)
258 cd03230 ABC_DR_subfamily_A Thi 97.5 6.3E-05 1.4E-09 60.2 2.4 36 45-82 15-50 (173)
259 cd03223 ABCD_peroxisomal_ALDP 97.5 7.6E-05 1.6E-09 59.3 2.8 37 45-83 16-52 (166)
260 COG4555 NatA ABC-type Na+ tran 97.5 3.6E-05 7.7E-10 62.4 0.9 51 32-84 4-54 (245)
261 PF03308 ArgK: ArgK protein; 97.5 0.00027 5.9E-09 59.6 6.1 30 56-85 27-56 (266)
262 smart00382 AAA ATPases associa 97.5 9.1E-05 2E-09 55.6 3.1 26 60-85 4-29 (148)
263 TIGR02211 LolD_lipo_ex lipopro 97.5 6.3E-05 1.4E-09 62.4 2.4 37 45-83 20-56 (221)
264 COG4604 CeuD ABC-type enteroch 97.5 0.0001 2.2E-09 59.7 3.4 50 32-84 4-53 (252)
265 cd03296 ABC_CysA_sulfate_impor 97.5 6.6E-05 1.4E-09 63.2 2.5 36 45-82 17-52 (239)
266 COG2274 SunT ABC-type bacterio 97.5 6.1E-05 1.3E-09 72.7 2.4 51 32-84 474-525 (709)
267 PRK10744 pstB phosphate transp 97.5 7.2E-05 1.6E-09 63.8 2.6 37 44-82 27-63 (260)
268 cd03266 ABC_NatA_sodium_export 97.5 7.3E-05 1.6E-09 61.9 2.6 36 45-82 20-55 (218)
269 TIGR03410 urea_trans_UrtE urea 97.5 7.6E-05 1.7E-09 62.4 2.7 37 45-83 15-51 (230)
270 PRK11248 tauB taurine transpor 97.5 6.8E-05 1.5E-09 63.9 2.4 36 45-82 16-51 (255)
271 cd03229 ABC_Class3 This class 97.5 6.9E-05 1.5E-09 60.2 2.3 36 45-82 15-50 (178)
272 PRK10247 putative ABC transpor 97.5 7.5E-05 1.6E-09 62.3 2.6 36 45-82 22-57 (225)
273 PLN02840 tRNA dimethylallyltra 97.5 0.00013 2.8E-09 66.0 4.3 32 55-86 18-49 (421)
274 TIGR03864 PQQ_ABC_ATP ABC tran 97.5 6.9E-05 1.5E-09 63.0 2.4 36 45-82 16-51 (236)
275 PRK10584 putative ABC transpor 97.5 7.2E-05 1.6E-09 62.5 2.5 36 45-82 25-60 (228)
276 cd03234 ABCG_White The White s 97.5 4.2E-05 9.2E-10 63.8 1.1 38 44-83 21-58 (226)
277 PRK14242 phosphate transporter 97.5 7.6E-05 1.6E-09 63.3 2.6 36 45-82 21-56 (253)
278 PRK14247 phosphate ABC transpo 97.4 8.2E-05 1.8E-09 63.0 2.8 37 45-83 18-54 (250)
279 PRK10751 molybdopterin-guanine 97.4 0.00016 3.4E-09 57.9 4.2 29 57-85 5-33 (173)
280 PF07728 AAA_5: AAA domain (dy 97.4 0.00012 2.6E-09 56.2 3.4 27 61-87 2-28 (139)
281 PRK11264 putative amino-acid A 97.4 8.8E-05 1.9E-09 62.8 2.9 36 45-82 18-53 (250)
282 COG4559 ABC-type hemin transpo 97.4 8.2E-05 1.8E-09 60.8 2.5 37 45-83 16-52 (259)
283 COG1118 CysA ABC-type sulfate/ 97.4 9.3E-05 2E-09 63.6 3.0 36 46-83 18-53 (345)
284 TIGR02770 nickel_nikD nickel i 97.4 9.3E-05 2E-09 61.9 3.0 35 47-83 3-37 (230)
285 PRK11629 lolD lipoprotein tran 97.4 7E-05 1.5E-09 62.8 2.2 36 45-82 24-59 (233)
286 PRK13540 cytochrome c biogenes 97.4 7.8E-05 1.7E-09 61.0 2.4 36 45-82 16-51 (200)
287 cd03232 ABC_PDR_domain2 The pl 97.4 7.1E-05 1.5E-09 60.9 2.2 35 45-81 22-56 (192)
288 PRK11124 artP arginine transpo 97.4 8.3E-05 1.8E-09 62.7 2.6 36 45-82 17-52 (242)
289 PRK13539 cytochrome c biogenes 97.4 8.4E-05 1.8E-09 61.2 2.6 36 45-82 17-52 (207)
290 COG1134 TagH ABC-type polysacc 97.4 9.2E-05 2E-09 61.6 2.7 40 43-84 40-79 (249)
291 cd03247 ABCC_cytochrome_bd The 97.4 7.2E-05 1.6E-09 60.1 2.1 36 45-82 17-52 (178)
292 cd03254 ABCC_Glucan_exporter_l 97.4 9.3E-05 2E-09 61.8 2.8 37 45-83 18-54 (229)
293 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00012 2.6E-09 64.9 3.6 27 58-84 78-104 (361)
294 PTZ00322 6-phosphofructo-2-kin 97.4 0.0016 3.4E-08 63.1 11.5 30 59-88 216-245 (664)
295 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.4 9E-05 1.9E-09 61.9 2.7 37 44-82 36-72 (224)
296 TIGR01184 ntrCD nitrate transp 97.4 0.0001 2.2E-09 61.8 3.0 34 48-83 3-36 (230)
297 cd03268 ABC_BcrA_bacitracin_re 97.4 8.4E-05 1.8E-09 61.2 2.4 36 45-82 15-50 (208)
298 cd03290 ABCC_SUR1_N The SUR do 97.4 8.4E-05 1.8E-09 61.6 2.4 37 44-82 15-51 (218)
299 cd03264 ABC_drug_resistance_li 97.4 0.0001 2.2E-09 60.8 2.8 35 45-82 15-49 (211)
300 cd03236 ABC_RNaseL_inhibitor_d 97.4 8.3E-05 1.8E-09 63.4 2.3 36 45-83 16-51 (255)
301 PRK14241 phosphate transporter 97.4 8.8E-05 1.9E-09 63.2 2.5 36 45-82 19-54 (258)
302 PRK10908 cell division protein 97.4 9.2E-05 2E-09 61.6 2.5 36 45-82 17-52 (222)
303 PRK14250 phosphate ABC transpo 97.4 9.2E-05 2E-09 62.4 2.5 36 45-82 18-53 (241)
304 cd03215 ABC_Carb_Monos_II This 97.4 9.5E-05 2.1E-09 59.6 2.5 37 45-83 15-51 (182)
305 COG1131 CcmA ABC-type multidru 97.4 3.3E-05 7.1E-10 67.2 -0.2 48 34-83 9-56 (293)
306 TIGR03005 ectoine_ehuA ectoine 97.4 8.6E-05 1.9E-09 63.0 2.3 37 45-83 15-51 (252)
307 PRK14248 phosphate ABC transpo 97.4 9.7E-05 2.1E-09 63.3 2.6 37 44-82 35-71 (268)
308 cd03228 ABCC_MRP_Like The MRP 97.4 0.00011 2.4E-09 58.6 2.7 37 45-83 17-53 (171)
309 PRK14256 phosphate ABC transpo 97.4 0.0001 2.2E-09 62.6 2.6 36 45-82 19-54 (252)
310 PRK14267 phosphate ABC transpo 97.4 0.0001 2.3E-09 62.5 2.7 37 45-83 19-55 (253)
311 TIGR00972 3a0107s01c2 phosphat 97.4 0.0001 2.3E-09 62.3 2.7 36 45-82 16-51 (247)
312 cd03244 ABCC_MRP_domain2 Domai 97.4 0.00011 2.4E-09 61.0 2.8 36 45-82 19-54 (221)
313 TIGR02323 CP_lyasePhnK phospho 97.4 0.0001 2.3E-09 62.5 2.7 37 45-83 18-54 (253)
314 cd03245 ABCC_bacteriocin_expor 97.4 0.00011 2.4E-09 60.9 2.8 36 45-82 19-54 (220)
315 PRK09493 glnQ glutamine ABC tr 97.4 9.9E-05 2.1E-09 62.1 2.5 37 45-83 16-52 (240)
316 cd03246 ABCC_Protease_Secretio 97.4 0.0001 2.2E-09 59.0 2.4 37 45-83 17-53 (173)
317 cd03216 ABC_Carb_Monos_I This 97.4 9.5E-05 2.1E-09 58.6 2.3 36 45-82 15-50 (163)
318 PRK11247 ssuB aliphatic sulfon 97.4 9.5E-05 2.1E-09 63.1 2.4 37 45-83 27-63 (257)
319 PRK00091 miaA tRNA delta(2)-is 97.4 0.00014 3.1E-09 63.4 3.6 30 58-87 4-33 (307)
320 PRK13638 cbiO cobalt transport 97.4 0.0001 2.3E-09 63.2 2.7 37 45-83 16-52 (271)
321 TIGR01189 ccmA heme ABC export 97.4 0.0001 2.2E-09 60.2 2.5 36 45-82 15-50 (198)
322 cd03217 ABC_FeS_Assembly ABC-t 97.4 0.00012 2.7E-09 59.9 3.0 35 45-81 15-49 (200)
323 PRK13538 cytochrome c biogenes 97.4 0.00011 2.4E-09 60.3 2.7 37 45-83 16-52 (204)
324 cd03295 ABC_OpuCA_Osmoprotecti 97.4 9.7E-05 2.1E-09 62.3 2.4 37 45-83 16-52 (242)
325 PRK10895 lipopolysaccharide AB 97.4 0.0001 2.2E-09 62.1 2.4 37 45-83 18-54 (241)
326 PRK13547 hmuV hemin importer A 97.4 0.00011 2.3E-09 63.3 2.6 37 45-83 16-52 (272)
327 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.4 0.00011 2.4E-09 61.8 2.6 37 45-83 18-54 (238)
328 cd03252 ABCC_Hemolysin The ABC 97.4 0.00011 2.4E-09 61.7 2.6 37 45-83 17-53 (237)
329 cd03369 ABCC_NFT1 Domain 2 of 97.4 0.00013 2.8E-09 60.0 3.0 36 45-82 23-58 (207)
330 TIGR02324 CP_lyasePhnL phospho 97.4 0.00012 2.5E-09 61.0 2.7 37 45-83 23-59 (224)
331 PRK14273 phosphate ABC transpo 97.4 0.00013 2.8E-09 62.0 3.0 37 45-83 22-58 (254)
332 COG0396 sufC Cysteine desulfur 97.4 0.00014 3.1E-09 60.0 3.1 38 44-83 18-55 (251)
333 cd03267 ABC_NatA_like Similar 97.4 0.00011 2.4E-09 61.8 2.5 37 44-82 35-71 (236)
334 COG4598 HisP ABC-type histidin 97.4 0.00017 3.7E-09 57.6 3.4 47 30-79 7-53 (256)
335 PRK14259 phosphate ABC transpo 97.4 0.00011 2.4E-09 63.0 2.6 36 45-82 28-63 (269)
336 cd03248 ABCC_TAP TAP, the Tran 97.4 0.00013 2.7E-09 60.9 2.8 36 45-82 29-64 (226)
337 TIGR02769 nickel_nikE nickel i 97.4 0.00012 2.7E-09 62.6 2.8 37 45-83 26-62 (265)
338 PRK14274 phosphate ABC transpo 97.4 0.00011 2.3E-09 62.7 2.4 37 45-83 27-63 (259)
339 cd03233 ABC_PDR_domain1 The pl 97.4 8.8E-05 1.9E-09 60.9 1.8 37 45-83 22-58 (202)
340 cd03253 ABCC_ATM1_transporter 97.4 0.00011 2.5E-09 61.5 2.6 36 45-82 16-51 (236)
341 cd03250 ABCC_MRP_domain1 Domai 97.4 0.00012 2.6E-09 60.0 2.7 37 45-83 20-56 (204)
342 PRK11701 phnK phosphonate C-P 97.4 0.00011 2.3E-09 62.7 2.4 37 45-83 21-57 (258)
343 cd03251 ABCC_MsbA MsbA is an e 97.4 0.00012 2.5E-09 61.4 2.6 37 45-83 17-53 (234)
344 COG1122 CbiO ABC-type cobalt t 97.4 0.00011 2.4E-09 61.8 2.3 40 43-84 17-56 (235)
345 COG1703 ArgK Putative periplas 97.4 0.00056 1.2E-08 58.7 6.6 33 53-85 46-78 (323)
346 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 9.8E-05 2.1E-09 57.3 1.9 36 45-82 15-50 (144)
347 PRK13651 cobalt transporter AT 97.3 0.00011 2.3E-09 64.4 2.3 36 45-82 22-57 (305)
348 cd03214 ABC_Iron-Siderophores_ 97.3 0.00012 2.6E-09 58.9 2.5 36 45-82 14-49 (180)
349 PRK10575 iron-hydroxamate tran 97.3 0.00011 2.3E-09 63.0 2.3 37 44-82 25-61 (265)
350 PRK14239 phosphate transporter 97.3 0.00012 2.6E-09 62.1 2.6 35 45-81 20-54 (252)
351 PRK13548 hmuV hemin importer A 97.3 0.00012 2.5E-09 62.5 2.5 37 45-83 17-53 (258)
352 PRK14255 phosphate ABC transpo 97.3 0.00013 2.8E-09 61.9 2.8 36 45-82 20-55 (252)
353 PRK14240 phosphate transporter 97.3 0.00012 2.7E-09 61.9 2.6 36 45-82 18-53 (250)
354 PRK14262 phosphate ABC transpo 97.3 0.00012 2.6E-09 62.0 2.5 37 45-83 18-54 (250)
355 cd03231 ABC_CcmA_heme_exporter 97.3 0.00014 3.1E-09 59.6 2.9 36 45-82 15-50 (201)
356 PRK14251 phosphate ABC transpo 97.3 0.00012 2.7E-09 62.0 2.6 36 45-82 19-54 (251)
357 PRK13647 cbiO cobalt transport 97.3 0.00011 2.3E-09 63.3 2.2 37 45-83 20-56 (274)
358 PRK13646 cbiO cobalt transport 97.3 0.00011 2.4E-09 63.6 2.3 38 44-83 21-58 (286)
359 PRK13648 cbiO cobalt transport 97.3 0.00012 2.6E-09 62.8 2.5 37 45-83 24-60 (269)
360 PRK09435 membrane ATPase/prote 97.3 0.00057 1.2E-08 60.3 6.7 31 55-85 53-83 (332)
361 TIGR01288 nodI ATP-binding ABC 97.3 0.00012 2.7E-09 63.9 2.6 36 45-82 19-54 (303)
362 CHL00131 ycf16 sulfate ABC tra 97.3 0.00013 2.8E-09 61.9 2.6 35 45-81 22-56 (252)
363 TIGR01188 drrA daunorubicin re 97.3 0.00012 2.7E-09 63.9 2.5 37 45-83 8-44 (302)
364 PRK13649 cbiO cobalt transport 97.3 0.00011 2.5E-09 63.3 2.2 36 45-82 22-57 (280)
365 PRK14243 phosphate transporter 97.3 0.00015 3.3E-09 62.0 3.0 38 44-83 24-61 (264)
366 PRK14235 phosphate transporter 97.3 0.00011 2.4E-09 63.0 2.1 37 45-83 34-70 (267)
367 PRK14237 phosphate transporter 97.3 0.00012 2.6E-09 62.8 2.3 37 44-82 34-70 (267)
368 PRK14272 phosphate ABC transpo 97.3 0.00015 3.3E-09 61.4 2.9 37 44-82 18-54 (252)
369 PF02224 Cytidylate_kin: Cytid 97.3 0.0046 1E-07 48.4 10.9 73 175-247 79-157 (157)
370 PRK13543 cytochrome c biogenes 97.3 0.00014 3.1E-09 60.2 2.6 36 45-82 26-61 (214)
371 PRK09544 znuC high-affinity zi 97.3 0.00011 2.4E-09 62.4 2.0 36 45-82 19-54 (251)
372 PRK11022 dppD dipeptide transp 97.3 0.00012 2.5E-09 64.7 2.2 38 44-83 21-58 (326)
373 PRK15056 manganese/iron transp 97.3 0.00011 2.4E-09 63.1 2.0 36 45-82 22-57 (272)
374 PRK14253 phosphate ABC transpo 97.3 0.00015 3.3E-09 61.4 2.8 37 45-83 18-54 (249)
375 PRK14269 phosphate ABC transpo 97.3 0.00013 2.8E-09 61.7 2.4 37 44-82 16-52 (246)
376 PRK15112 antimicrobial peptide 97.3 0.00015 3.2E-09 62.2 2.8 37 45-83 28-64 (267)
377 PRK14261 phosphate ABC transpo 97.3 0.00013 2.9E-09 61.9 2.5 36 45-82 21-56 (253)
378 PRK11300 livG leucine/isoleuci 97.3 0.00012 2.6E-09 62.2 2.1 37 45-83 20-56 (255)
379 PRK11432 fbpC ferric transport 97.3 0.00013 2.7E-09 65.1 2.4 37 45-83 21-57 (351)
380 PRK11650 ugpC glycerol-3-phosp 97.3 0.00013 2.9E-09 65.1 2.5 37 45-83 19-55 (356)
381 PRK11831 putative ABC transpor 97.3 0.00011 2.5E-09 63.0 2.0 37 45-83 22-58 (269)
382 PRK13640 cbiO cobalt transport 97.3 0.00011 2.4E-09 63.5 1.9 36 45-82 22-57 (282)
383 PRK13650 cbiO cobalt transport 97.3 0.00013 2.7E-09 63.0 2.2 36 45-82 22-57 (279)
384 PRK13637 cbiO cobalt transport 97.3 0.00012 2.7E-09 63.4 2.2 37 45-83 22-58 (287)
385 PRK09580 sufC cysteine desulfu 97.3 0.00015 3.2E-09 61.3 2.6 36 45-82 16-51 (248)
386 cd03213 ABCG_EPDR ABCG transpo 97.3 0.00016 3.5E-09 58.9 2.7 37 44-82 23-59 (194)
387 COG2256 MGS1 ATPase related to 97.3 0.0003 6.4E-09 62.6 4.4 50 54-103 44-95 (436)
388 COG1132 MdlB ABC-type multidru 97.3 0.00015 3.2E-09 68.9 2.8 51 32-84 331-381 (567)
389 PRK14268 phosphate ABC transpo 97.3 0.00014 3E-09 62.0 2.4 36 45-82 27-62 (258)
390 PRK13643 cbiO cobalt transport 97.3 0.00014 3E-09 63.1 2.4 36 45-82 21-56 (288)
391 PRK13645 cbiO cobalt transport 97.3 0.00013 2.8E-09 63.3 2.2 37 45-83 26-62 (289)
392 PRK14270 phosphate ABC transpo 97.3 0.00016 3.4E-09 61.3 2.7 36 45-82 19-54 (251)
393 PRK14238 phosphate transporter 97.3 0.00014 3.1E-09 62.4 2.4 49 32-83 27-75 (271)
394 PRK10418 nikD nickel transport 97.3 0.00016 3.4E-09 61.5 2.6 37 45-83 18-54 (254)
395 PRK09984 phosphonate/organopho 97.3 0.00016 3.4E-09 61.8 2.6 37 45-83 19-55 (262)
396 PRK14245 phosphate ABC transpo 97.3 0.00014 3.1E-09 61.6 2.3 35 45-81 18-52 (250)
397 PRK13546 teichoic acids export 97.3 0.00011 2.4E-09 62.9 1.6 41 41-83 35-75 (264)
398 PRK14244 phosphate ABC transpo 97.3 0.00015 3.3E-09 61.4 2.5 36 45-82 20-55 (251)
399 PRK10253 iron-enterobactin tra 97.3 0.00016 3.4E-09 61.9 2.6 37 45-83 22-58 (265)
400 PRK14260 phosphate ABC transpo 97.3 0.00016 3.6E-09 61.6 2.6 37 45-83 22-58 (259)
401 TIGR03411 urea_trans_UrtD urea 97.3 0.00016 3.4E-09 61.0 2.5 36 45-82 17-52 (242)
402 PRK10419 nikE nickel transport 97.3 0.00016 3.4E-09 62.1 2.5 37 44-82 26-62 (268)
403 PRK11614 livF leucine/isoleuci 97.3 0.00014 3E-09 61.2 2.1 36 45-82 20-55 (237)
404 PRK11000 maltose/maltodextrin 97.3 0.00014 3.1E-09 65.3 2.3 36 45-82 18-53 (369)
405 PRK14249 phosphate ABC transpo 97.3 0.00017 3.6E-09 61.2 2.6 37 45-83 19-55 (251)
406 PRK15093 antimicrobial peptide 97.3 0.00015 3.3E-09 64.1 2.4 37 45-83 22-58 (330)
407 PRK13632 cbiO cobalt transport 97.3 0.00016 3.4E-09 62.2 2.5 37 45-83 24-60 (271)
408 KOG2004|consensus 97.3 0.00039 8.4E-09 65.9 5.2 67 13-90 401-470 (906)
409 cd03298 ABC_ThiQ_thiamine_tran 97.3 0.00018 3.8E-09 59.4 2.7 33 48-82 16-48 (211)
410 PRK13641 cbiO cobalt transport 97.3 0.00015 3.3E-09 62.8 2.3 37 45-83 22-58 (287)
411 COG4608 AppF ABC-type oligopep 97.3 0.00017 3.6E-09 61.1 2.5 38 44-83 27-64 (268)
412 TIGR03740 galliderm_ABC gallid 97.3 0.00016 3.5E-09 60.1 2.4 36 45-82 15-50 (223)
413 COG1618 Predicted nucleotide k 97.3 0.00027 5.9E-09 55.2 3.4 27 59-85 6-32 (179)
414 TIGR02314 ABC_MetN D-methionin 97.3 0.00015 3.3E-09 64.4 2.2 38 44-83 19-56 (343)
415 PRK11153 metN DL-methionine tr 97.3 0.00014 3.1E-09 64.7 2.1 37 45-83 20-56 (343)
416 PRK13634 cbiO cobalt transport 97.2 0.00015 3.2E-09 63.0 2.1 37 45-83 22-58 (290)
417 TIGR02881 spore_V_K stage V sp 97.2 0.00074 1.6E-08 57.7 6.4 24 60-83 44-67 (261)
418 TIGR01193 bacteriocin_ABC ABC- 97.2 0.00015 3.2E-09 70.7 2.2 44 38-83 482-525 (708)
419 PRK14265 phosphate ABC transpo 97.2 0.00017 3.8E-09 62.0 2.5 36 45-82 35-70 (274)
420 PRK13644 cbiO cobalt transport 97.2 0.00017 3.6E-09 62.1 2.3 37 45-83 17-53 (274)
421 PRK13635 cbiO cobalt transport 97.2 0.00017 3.6E-09 62.3 2.3 37 45-83 22-58 (279)
422 TIGR03873 F420-0_ABC_ATP propo 97.2 0.00016 3.6E-09 61.4 2.2 37 45-83 16-52 (256)
423 PF02367 UPF0079: Uncharacteri 97.2 0.00037 8E-09 52.5 3.9 32 60-91 17-49 (123)
424 cd03237 ABC_RNaseL_inhibitor_d 97.2 0.00018 4E-09 60.9 2.5 29 53-83 22-50 (246)
425 PF03205 MobB: Molybdopterin g 97.2 0.00033 7.1E-09 54.1 3.6 27 59-85 1-27 (140)
426 PRK03695 vitamin B12-transport 97.2 0.00018 4E-09 60.9 2.4 36 45-82 11-46 (248)
427 PRK13652 cbiO cobalt transport 97.2 0.00016 3.5E-09 62.3 2.1 37 45-83 19-55 (277)
428 PRK10851 sulfate/thiosulfate t 97.2 0.00015 3.3E-09 64.7 2.0 37 45-83 17-53 (353)
429 PRK10619 histidine/lysine/argi 97.2 0.00018 3.9E-09 61.3 2.4 37 45-83 20-56 (257)
430 TIGR00968 3a0106s01 sulfate AB 97.2 0.00018 3.9E-09 60.5 2.3 36 45-82 15-50 (237)
431 PRK13633 cobalt transporter AT 97.2 0.00018 4E-09 62.1 2.4 37 45-83 25-61 (280)
432 PRK13631 cbiO cobalt transport 97.2 0.00017 3.8E-09 63.5 2.3 38 44-83 40-77 (320)
433 PF06309 Torsin: Torsin; Inte 97.2 0.0021 4.6E-08 48.4 7.8 68 10-84 12-79 (127)
434 PLN02796 D-glycerate 3-kinase 97.2 0.00029 6.3E-09 62.1 3.6 27 58-84 100-126 (347)
435 PRK09452 potA putrescine/sperm 97.2 0.00017 3.7E-09 64.9 2.2 37 45-83 29-65 (375)
436 PRK05800 cobU adenosylcobinami 97.2 0.00032 6.9E-09 56.0 3.5 27 59-85 2-28 (170)
437 PRK11308 dppF dipeptide transp 97.2 0.00019 4E-09 63.5 2.4 38 44-83 29-66 (327)
438 PRK11231 fecE iron-dicitrate t 97.2 0.00019 4.1E-09 61.0 2.4 36 45-82 17-52 (255)
439 COG4181 Predicted ABC-type tra 97.2 0.00024 5.3E-09 56.3 2.7 48 31-80 8-58 (228)
440 PRK14271 phosphate ABC transpo 97.2 0.0002 4.4E-09 61.7 2.5 48 33-83 25-72 (276)
441 PRK13541 cytochrome c biogenes 97.2 0.00021 4.6E-09 58.2 2.5 33 49-83 19-51 (195)
442 PRK14254 phosphate ABC transpo 97.2 0.00019 4.1E-09 62.2 2.4 37 44-82 53-89 (285)
443 cd03222 ABC_RNaseL_inhibitor T 97.2 0.00025 5.5E-09 57.0 2.9 30 52-83 21-50 (177)
444 COG1127 Ttg2A ABC-type transpo 97.2 0.00025 5.5E-09 59.0 2.9 52 29-83 8-59 (263)
445 TIGR03265 PhnT2 putative 2-ami 97.2 0.00017 3.8E-09 64.3 2.1 37 45-83 19-55 (353)
446 PRK13639 cbiO cobalt transport 97.2 0.00018 4E-09 61.9 2.2 36 45-82 17-52 (275)
447 PF03215 Rad17: Rad17 cell cyc 97.2 0.00057 1.2E-08 63.9 5.6 29 59-87 46-74 (519)
448 PRK14275 phosphate ABC transpo 97.2 0.00018 4E-09 62.3 2.2 35 45-81 54-88 (286)
449 PRK13537 nodulation ABC transp 97.2 0.00021 4.6E-09 62.5 2.6 38 44-83 21-58 (306)
450 cd03270 ABC_UvrA_I The excisio 97.2 0.00025 5.5E-09 59.3 2.9 30 44-75 9-38 (226)
451 PRK10790 putative multidrug tr 97.2 0.00018 4E-09 68.6 2.3 45 38-84 349-393 (592)
452 KOG0055|consensus 97.2 7.3E-05 1.6E-09 74.7 -0.4 55 29-85 350-406 (1228)
453 KOG0730|consensus 97.2 0.00092 2E-08 62.8 6.7 32 61-92 471-502 (693)
454 cd03289 ABCC_CFTR2 The CFTR su 97.2 0.00024 5.2E-09 61.2 2.8 37 45-83 19-55 (275)
455 PRK10771 thiQ thiamine transpo 97.2 0.00022 4.7E-09 59.8 2.4 33 49-83 18-50 (232)
456 TIGR02982 heterocyst_DevA ABC 97.2 0.00022 4.9E-09 59.2 2.5 36 45-82 20-55 (220)
457 PF13245 AAA_19: Part of AAA d 97.2 0.00044 9.6E-09 47.5 3.6 23 60-82 12-35 (76)
458 PRK14258 phosphate ABC transpo 97.2 0.00023 4.9E-09 60.8 2.6 37 45-83 22-58 (261)
459 PLN02748 tRNA dimethylallyltra 97.2 0.00034 7.3E-09 64.3 3.8 35 54-88 18-52 (468)
460 PRK13657 cyclic beta-1,2-gluca 97.2 0.00019 4.1E-09 68.4 2.2 45 38-84 343-387 (588)
461 TIGR03258 PhnT 2-aminoethylpho 97.2 0.00021 4.5E-09 64.0 2.3 36 45-82 20-55 (362)
462 PRK11174 cysteine/glutathione 97.2 0.00017 3.6E-09 68.7 1.9 37 44-82 364-400 (588)
463 cd03300 ABC_PotA_N PotA is an 97.2 0.00028 6.1E-09 59.1 3.0 37 45-83 15-51 (232)
464 COG4618 ArpD ABC-type protease 97.2 0.00017 3.6E-09 65.9 1.7 69 12-82 307-386 (580)
465 PRK14236 phosphate transporter 97.2 0.00022 4.7E-09 61.3 2.3 38 44-83 39-76 (272)
466 cd01131 PilT Pilus retraction 97.2 0.00035 7.6E-09 57.2 3.5 25 60-84 3-27 (198)
467 PRK13636 cbiO cobalt transport 97.2 0.00023 4.9E-09 61.6 2.4 38 44-83 20-57 (283)
468 PRK13536 nodulation factor exp 97.2 0.00022 4.8E-09 63.3 2.4 50 31-83 43-92 (340)
469 PRK14252 phosphate ABC transpo 97.2 0.00023 4.9E-09 61.0 2.4 37 44-82 30-66 (265)
470 cd03291 ABCC_CFTR1 The CFTR su 97.2 0.00024 5.2E-09 61.4 2.5 37 45-83 52-88 (282)
471 PF13555 AAA_29: P-loop contai 97.2 0.00053 1.2E-08 45.0 3.6 23 60-82 25-47 (62)
472 PRK14246 phosphate ABC transpo 97.2 0.00024 5.2E-09 60.6 2.5 37 45-83 25-61 (257)
473 TIGR01186 proV glycine betaine 97.2 0.0002 4.2E-09 64.1 2.0 37 45-83 8-44 (363)
474 TIGR01277 thiQ thiamine ABC tr 97.2 0.00023 5.1E-09 58.8 2.3 33 48-82 16-48 (213)
475 PRK14263 phosphate ABC transpo 97.2 0.00023 4.9E-09 60.9 2.3 37 45-83 23-59 (261)
476 TIGR02857 CydD thiol reductant 97.2 0.0002 4.4E-09 67.3 2.2 46 36-83 327-373 (529)
477 PRK11607 potG putrescine trans 97.2 0.00021 4.5E-09 64.4 2.1 36 45-82 34-69 (377)
478 PRK09473 oppD oligopeptide tra 97.2 0.00022 4.7E-09 63.1 2.2 38 44-83 30-67 (330)
479 PRK11176 lipid transporter ATP 97.1 0.0003 6.4E-09 67.0 3.2 40 43-84 356-395 (582)
480 TIGR02640 gas_vesic_GvpN gas v 97.1 0.00059 1.3E-08 58.4 4.7 27 61-87 24-50 (262)
481 KOG0055|consensus 97.1 0.00012 2.7E-09 73.1 0.6 51 32-84 990-1042(1228)
482 PRK15079 oligopeptide ABC tran 97.1 0.00022 4.8E-09 63.1 2.2 38 44-83 35-72 (331)
483 PF13191 AAA_16: AAA ATPase do 97.1 0.00074 1.6E-08 53.9 5.0 28 58-85 24-51 (185)
484 PRK10522 multidrug transporter 97.1 0.00019 4.1E-09 67.8 1.8 44 38-83 331-374 (547)
485 TIGR03797 NHPM_micro_ABC2 NHPM 97.1 0.0002 4.3E-09 69.5 1.9 47 36-84 458-505 (686)
486 PF07726 AAA_3: ATPase family 97.1 0.00028 6.2E-09 53.3 2.3 27 61-87 2-28 (131)
487 KOG0056|consensus 97.1 0.00015 3.2E-09 66.0 0.9 53 31-85 539-591 (790)
488 PRK13642 cbiO cobalt transport 97.1 0.00026 5.5E-09 61.1 2.3 37 45-83 22-58 (277)
489 PRK10938 putative molybdenum t 97.1 0.00031 6.6E-09 65.5 3.0 36 45-82 18-53 (490)
490 TIGR03238 dnd_assoc_3 dnd syst 97.1 0.00027 5.8E-09 64.7 2.4 28 47-76 23-50 (504)
491 PRK14266 phosphate ABC transpo 97.1 0.00027 5.8E-09 59.9 2.3 36 45-82 18-53 (250)
492 cd03288 ABCC_SUR2 The SUR doma 97.1 0.00025 5.5E-09 60.4 2.1 36 45-82 36-71 (257)
493 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.00028 6E-09 55.4 2.2 36 45-82 14-49 (157)
494 TIGR00958 3a01208 Conjugate Tr 97.1 0.00031 6.8E-09 68.4 3.0 49 34-84 483-533 (711)
495 PRK14264 phosphate ABC transpo 97.1 0.00028 6.1E-09 61.7 2.4 36 45-82 60-95 (305)
496 TIGR01650 PD_CobS cobaltochela 97.1 0.00042 9.2E-09 60.7 3.5 27 61-87 67-93 (327)
497 PF13173 AAA_14: AAA domain 97.1 0.00052 1.1E-08 52.0 3.5 25 59-83 3-27 (128)
498 PF00448 SRP54: SRP54-type pro 97.1 0.00048 1E-08 56.3 3.5 27 59-85 2-28 (196)
499 PLN00020 ribulose bisphosphate 97.1 0.00076 1.7E-08 59.9 4.9 31 59-89 149-179 (413)
500 TIGR03796 NHPM_micro_ABC1 NHPM 97.1 0.00027 5.8E-09 68.9 2.3 44 38-83 486-530 (710)
No 1
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.95 E-value=5.8e-27 Score=191.83 Aligned_cols=184 Identities=24% Similarity=0.400 Sum_probs=141.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcc-----cccCCCCc--hHHHHHHhccc-c---chHHHHHHHHHH-HHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSS--IMSLREKFDAH-D---SLLRRAYYSLGN-YIAAQDIKQD 127 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~-----~~~~p~~~--~~~~~~~~~~~-~---~~~~~~~~~~~~-~~~~~~i~~~ 127 (259)
+|+|+|.+||||||+++.|++++... +.++|+++ +..+|+...+. . ......+|++++ +++.+.+.++
T Consensus 5 fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~i~pa 84 (208)
T COG0125 5 FIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEVIKPA 84 (208)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 49999999999999999999999876 35678865 46778776653 1 233445566665 5688889998
Q ss_pred h-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHH
Q psy16563 128 L-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENE 205 (259)
Q Consensus 128 l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~ 205 (259)
+ .|.+||+|||+.|+++|+.. +.+++ .+....+..+....++||+++||++||++.++|+.+|+.. ++.+..
T Consensus 85 l~~g~vVI~DRy~~Ss~AYQg~---~~~~~---~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~ 158 (208)
T COG0125 85 LKEGKVVICDRYVDSSLAYQGG---GRGLD---LDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKE 158 (208)
T ss_pred hcCCCEEEECCcccHHHHhhhh---ccCCC---HHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchhhhH
Confidence 8 58999999999999999952 22221 1223333345555678999999999999999999999865 444432
Q ss_pred HHHHHHHHHHHHHHHHhcCC--C-CeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 206 LKKNAKFRELLTTIYRNMNN--P-ELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 206 ~e~~~~~~~~~~~~y~~~~~--~-~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
..++++++++.|.++.. + .+++||++.+ ++++.++|.+.|....
T Consensus 159 ---~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~-~e~v~~~i~~~l~~~l 205 (208)
T COG0125 159 ---DDEFLEKVREGYLELAAKFPERIIVIDASRP-LEEVHEEILKILKERL 205 (208)
T ss_pred ---HHHHHHHHHHHHHHHHhhCCCeEEEEECCCC-HHHHHHHHHHHHHHhh
Confidence 33689999999999953 3 3899999999 9999999999998754
No 2
>PRK07933 thymidylate kinase; Validated
Probab=99.93 E-value=1.2e-24 Score=180.32 Aligned_cols=186 Identities=19% Similarity=0.262 Sum_probs=129.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhccc-----ccCC--CCc--hHHHHHHhcccc------chHHHHHHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASL-----KSTP--PSS--IMSLREKFDAHD------SLLRRAYYSLGNYIAAQD 123 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~-----~~~p--~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 123 (259)
++|+|+|++||||||+++.|+++|.... +.+| +.+ ++.+++.+.... ......+|+++++...+.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~~~ 80 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGARDE 80 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhHHH
Confidence 4699999999999999999999998652 3566 322 466777765321 122345667776554566
Q ss_pred HHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc---ccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563 124 IKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP---KDLMKPDLVIYLTVSEAIRLQRLSRRKNF 199 (259)
Q Consensus 124 i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~ 199 (259)
+.+++ +|..||+|||++|+++|+.++. +.+. . .....++..+. ...+.||++|||++||++..+|+.+|++.
T Consensus 81 I~p~l~~g~~VI~DRy~~S~~Ayq~~~~-~~~~--~-~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~ 156 (213)
T PRK07933 81 LAGLLAAHDVVILDRYVASNAAYSAARL-HQDA--D-GEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQ 156 (213)
T ss_pred HHHHHhCCCEEEECCccchhHHHhccCC-Cccc--c-hHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhccc
Confidence 88877 5889999999999999986531 1110 0 01122222221 23457999999999999999999999742
Q ss_pred c--hHHHHHHHHHHHHHHHHHHHHhcCC---C-CeEEEeCCCCCHhhHHHHHHHHH
Q psy16563 200 T--LEENELKKNAKFRELLTTIYRNMNN---P-ELVFVDNSEKSVHESSNDIVELI 249 (259)
Q Consensus 200 ~--~~~~~~e~~~~~~~~~~~~y~~~~~---~-~~~vID~s~~~~eev~~~I~~~l 249 (259)
. ...+..+...+|++++++.|.++.. + .+++||++.+ ++++.++|.+.|
T Consensus 157 ~~~~~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~-~e~v~~~i~~~~ 211 (213)
T PRK07933 157 DADRARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDPDVD-PAALAARLAAAL 211 (213)
T ss_pred cCCcccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCC-HHHHHHHHHHHh
Confidence 1 0112233346799999999998842 2 5899999877 999999998865
No 3
>PRK13973 thymidylate kinase; Provisional
Probab=99.93 E-value=3.5e-24 Score=177.69 Aligned_cols=187 Identities=21% Similarity=0.350 Sum_probs=131.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcc---c--ccCCCCc--hHHHHHHhccc--cc---hHHHHHHHHHHH-HHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKAS---L--KSTPPSS--IMSLREKFDAH--DS---LLRRAYYSLGNY-IAAQDIKQ 126 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~---~--~~~p~~~--~~~~~~~~~~~--~~---~~~~~~~~~~~~-~~~~~i~~ 126 (259)
+|+|+|++||||||+++.|+++|... + ..+|+.. ++.+|+.+..+ .. .....+|+++++ +..+.+.+
T Consensus 5 ~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~~ 84 (213)
T PRK13973 5 FITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEVIRP 84 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999543 3 3466643 46677765532 11 223355666664 44566888
Q ss_pred Hh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHH
Q psy16563 127 DL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE 205 (259)
Q Consensus 127 ~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~ 205 (259)
++ +|.+||+|||++|+++|+.+. ++.+ .+....+..+....+.||++|||+||++++.+|+.+|+..+.. +.
T Consensus 85 ~l~~g~~Vi~DRy~~S~~ayq~~~---~~~~---~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~-~~ 157 (213)
T PRK13973 85 ALARGKIVLCDRFIDSTRAYQGVT---GNVD---PALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTP-DR 157 (213)
T ss_pred HHHCCCEEEEcchhhhHHHHcccc---cCCC---HHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCcc-Cc
Confidence 77 588999999999999998642 2221 1122333334445578999999999999999999999743200 11
Q ss_pred HH-HHHHHHHHHHHHHHhcC--CC-CeEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563 206 LK-KNAKFRELLTTIYRNMN--NP-ELVFVDNSEKSVHESSNDIVELIHNLPM 254 (259)
Q Consensus 206 ~e-~~~~~~~~~~~~y~~~~--~~-~~~vID~s~~~~eev~~~I~~~l~~~~~ 254 (259)
.+ ...++++++.+.|.++. .+ .+.+||++++ ++++.++|.+.+.....
T Consensus 158 ~e~~~~~~~~~~~~~y~~l~~~~~~~~~~Ida~~~-~e~V~~~I~~~i~~~~~ 209 (213)
T PRK13973 158 FEKEDLAFHEKRREAFLQIAAQEPERCVVIDATAS-PEAVAAEIWAAVDQRLL 209 (213)
T ss_pred hhhchHHHHHHHHHHHHHHHHhCCCcEEEEcCCCC-HHHHHHHHHHHHHHHHh
Confidence 11 14567788888888874 22 4789999998 99999999999987543
No 4
>PLN02924 thymidylate kinase
Probab=99.92 E-value=1.1e-23 Score=174.96 Aligned_cols=177 Identities=20% Similarity=0.259 Sum_probs=131.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhccc-----ccCCCC-c--hHHHHHHhccccc---hHHHHHHHHHHHHHHHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASL-----KSTPPS-S--IMSLREKFDAHDS---LLRRAYYSLGNYIAAQDIKQ 126 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~-----~~~p~~-~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~ 126 (259)
.++|+|+|++|||||||++.|++++...+ +++|+. + +..+++.+..... .....+|+++++.....+.+
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~I~p 95 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSLMER 95 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34599999999999999999999998653 345652 2 3456665543221 22335577777665667888
Q ss_pred Hh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHH
Q psy16563 127 DL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE 205 (259)
Q Consensus 127 ~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~ 205 (259)
++ .|.+||+|||++|+++|+.++ +. ..+++..+....+.||++|||++||+++.+|...+++ +.
T Consensus 96 al~~g~vVI~DRy~~S~~ayq~~~----g~------~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~~--~~--- 160 (220)
T PLN02924 96 KLKSGTTLVVDRYSYSGVAFSAAK----GL------DLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGE--RY--- 160 (220)
T ss_pred HHHCCCEEEEccchhHHHHHHHhc----CC------CHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCcc--cc---
Confidence 87 589999999999999998643 22 1233444444567899999999999999999754322 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 206 LKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 206 ~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
+ ..++++++++.|.++....+.+||++.+ ++++.++|.+.+...
T Consensus 161 -E-~~~~~~rv~~~Y~~la~~~~~vIDa~~s-ieeV~~~I~~~I~~~ 204 (220)
T PLN02924 161 -E-KLEFQKKVAKRFQTLRDSSWKIIDASQS-IEEVEKKIREVVLDT 204 (220)
T ss_pred -c-cHHHHHHHHHHHHHHhhcCEEEECCCCC-HHHHHHHHHHHHHHH
Confidence 1 4678999999999997667889999987 999999999988763
No 5
>PRK13976 thymidylate kinase; Provisional
Probab=99.91 E-value=3.7e-23 Score=170.56 Aligned_cols=182 Identities=23% Similarity=0.274 Sum_probs=129.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcc-------cccCCCCc--hHHHHHHhcccc---chHHHHHHHHHHH-HHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKAS-------LKSTPPSS--IMSLREKFDAHD---SLLRRAYYSLGNY-IAAQDIK 125 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~-------~~~~p~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~i~ 125 (259)
++|+|+|.+||||||+++.|+++|... ...+|+++ +..+++.+.... ......+|+++++ +..+.+.
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~ 80 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVIL 80 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999998653 12467654 366777665321 1223345666664 4566788
Q ss_pred HHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHH
Q psy16563 126 QDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEEN 204 (259)
Q Consensus 126 ~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~ 204 (259)
+++ +|.+||+|||++|+++|+.. +.+.+ .+....+..+.. .+.||++|||++||++.++|+.+|+- +
T Consensus 81 p~l~~G~~VI~DRy~~S~~Ayq~~---~~g~~---~~~i~~l~~~~~-~~~PDl~i~Ldv~~e~a~~Ri~~~~~----e- 148 (209)
T PRK13976 81 PALLQGKIVICDRFIDSTIAYQGY---GCGVD---LSLIRDLNDLVV-DKYPDITFVLDIDIELSLSRADKNGY----E- 148 (209)
T ss_pred HHHHCCCEEEECCCcCHHHHhccc---cCCCC---HHHHHHHHHHhh-CCCCCEEEEEeCCHHHHHHHhcccch----h-
Confidence 887 69999999999999999853 12221 122344444443 46799999999999999999965431 1
Q ss_pred HHHHHHHHHHHHHHHHHhcC--CC-CeEEEeCCC--CC---HhhHHHHHHHHHhcccc
Q psy16563 205 ELKKNAKFRELLTTIYRNMN--NP-ELVFVDNSE--KS---VHESSNDIVELIHNLPM 254 (259)
Q Consensus 205 ~~e~~~~~~~~~~~~y~~~~--~~-~~~vID~s~--~~---~eev~~~I~~~l~~~~~ 254 (259)
+...+|++++++.|.++. .+ .+.+||++. .+ ++++.++|.+.+.....
T Consensus 149 --~~~~~~l~~v~~~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~~ 204 (209)
T PRK13976 149 --FMDLEFYDKVRKGFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVTK 204 (209)
T ss_pred --cccHHHHHHHHHHHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHHH
Confidence 114678899999999985 33 378889842 23 89999999999876543
No 6
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.91 E-value=2.7e-23 Score=168.88 Aligned_cols=170 Identities=27% Similarity=0.416 Sum_probs=122.2
Q ss_pred EEcCCCCcHHHHHHHHHHHhhcccc----cCCCC-c--hHHHHHHhccccc---hHHHHHHHHHH-HHHHHHHHHHh-CC
Q psy16563 63 FEGLDGCGKSHTSQTVAKKLKASLK----STPPS-S--IMSLREKFDAHDS---LLRRAYYSLGN-YIAAQDIKQDL-QK 130 (259)
Q Consensus 63 ~~g~~g~gkst~~~~l~~~~~~~~~----~~p~~-~--~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~i~~~l-~~ 130 (259)
|+|++||||||+++.|++++....+ ..|+. + +..+++.+..... .....+|.+.+ +.....+.+++ +|
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~g 80 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKRG 80 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7999999999999999999987753 33332 2 3566776663222 23345566666 67777788877 68
Q ss_pred CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCC--CCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLM--KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK 208 (259)
Q Consensus 131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~--~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~ 208 (259)
.+||+|||++|+++|+.+. ++. ...++..+..... .||++|||++||+++++|+.+|+...... ..
T Consensus 81 ~~VI~DRy~~S~lay~~~~---~~~------~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~---~~ 148 (186)
T PF02223_consen 81 KIVICDRYIYSTLAYQGAK---GEL------DIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEE---EE 148 (186)
T ss_dssp SEEEEESEHHHHHHHHTTT---TSS------THHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTT---TH
T ss_pred CEEEEechhHHHHHhCccc---cCC------cchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccchHH---HH
Confidence 9999999999999998652 111 1233333333323 89999999999999999999998721111 12
Q ss_pred HHHHHHHHHHHHHhcC--CCCeEEEeCCCCCHhhHHHHH
Q psy16563 209 NAKFRELLTTIYRNMN--NPELVFVDNSEKSVHESSNDI 245 (259)
Q Consensus 209 ~~~~~~~~~~~y~~~~--~~~~~vID~s~~~~eev~~~I 245 (259)
..+++++.++.|.++. ..++++||++.+ ++++.++|
T Consensus 149 ~~~~~~~~~~~y~~l~~~~~~~~iid~~~~-~e~v~~~I 186 (186)
T PF02223_consen 149 DLEYLRRVREAYLELAKDPNNWVIIDASRS-IEEVHEQI 186 (186)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTEEEEETTS--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCCC-HHHHHhhC
Confidence 5678888888998886 456999999998 99999876
No 7
>PRK13975 thymidylate kinase; Provisional
Probab=99.90 E-value=4.6e-22 Score=162.82 Aligned_cols=180 Identities=29% Similarity=0.414 Sum_probs=125.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCc--hHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS--IMSLREKFDAH--DSLLRRAYYSLGNYIAAQDIKQDLQKQPVV 134 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi 134 (259)
++|+|+|++||||||+++.|+++++......|... +..+++.+... .......+|+.+++...+.+++.+....||
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~~~vi 82 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKKRDVV 82 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 35999999999999999999999997655555543 35566666543 112233456666665556677766667899
Q ss_pred EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q psy16563 135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214 (259)
Q Consensus 135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~ 214 (259)
+|||+.++.+|+.+ ++. +. ..+..+....+.||++|||++|++++.+|+..|+... .+ ..++.+
T Consensus 83 ~DRy~~S~~a~~~~----~g~----~~--~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~-~~-----~~~~~~ 146 (196)
T PRK13975 83 CDRYVYSSIAYQSV----QGI----DE--DFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEI-FE-----KKEFLK 146 (196)
T ss_pred EECchhHHHHHhcc----cCC----CH--HHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccc-cc-----hHHHHH
Confidence 99999999999753 222 11 1122222223579999999999999999999986311 11 234556
Q ss_pred HHHHHHHhcC-------CCCeEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563 215 LLTTIYRNMN-------NPELVFVDNSEKSVHESSNDIVELIHNLPM 254 (259)
Q Consensus 215 ~~~~~y~~~~-------~~~~~vID~s~~~~eev~~~I~~~l~~~~~ 254 (259)
++.+.|.++. ..++++||+++.++++++++|.+.|....+
T Consensus 147 ~~~~~y~~~~~~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~~ 193 (196)
T PRK13975 147 KVQEKYLELANNEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKIP 193 (196)
T ss_pred HHHHHHHHHHhhcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 6666676652 124799999866699999999999976543
No 8
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.89 E-value=7.9e-22 Score=162.34 Aligned_cols=184 Identities=24% Similarity=0.330 Sum_probs=124.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcc-----cccCCCCc--hHHHHHHhcc---cc-chHHHHHHHHHHH-HHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSS--IMSLREKFDA---HD-SLLRRAYYSLGNY-IAAQDIKQ 126 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~-----~~~~p~~~--~~~~~~~~~~---~~-~~~~~~~~~~~~~-~~~~~i~~ 126 (259)
++|+|+|++||||||+++.|++.++.. +..+|... ++.+++.+.. +. .......+.+.++ .....+.+
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~ 83 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEVIKP 83 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999988543 22344432 3556665542 11 1112223334433 33445666
Q ss_pred Hh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHH
Q psy16563 127 DL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE 205 (259)
Q Consensus 127 ~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~ 205 (259)
.+ .|.+||+|||++++++|+.+.. +.+ .+....+..+....+.||++|||++|++++++|+.+|+..+..+.
T Consensus 84 ~l~~g~~vi~DR~~~s~~~~~~~~~---~~~---~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~~~~~- 156 (205)
T PRK00698 84 ALARGKWVISDRFIDSSLAYQGGGR---GLD---IDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDRIEQ- 156 (205)
T ss_pred HHHCCCEEEECCchhHHHHHCCCCC---CCC---HHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhh-
Confidence 55 5889999999999999875321 111 122334444444457799999999999999999999985332221
Q ss_pred HHHHHHHHHHHHHHHHhcC---CCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 206 LKKNAKFRELLTTIYRNMN---NPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 206 ~e~~~~~~~~~~~~y~~~~---~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
...++++++...|..+. ...+++||++++ ++++.++|.+.+.+.
T Consensus 157 --~~~~~~~~~~~~y~~~~~~~~~~~~~Id~~~~-~e~v~~~i~~~i~~~ 203 (205)
T PRK00698 157 --EGLDFFERVREGYLELAEKEPERIVVIDASQS-LEEVHEDILAVIKAW 203 (205)
T ss_pred --hhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCC-HHHHHHHHHHHHHHH
Confidence 14567788888888774 235889999987 999999999998764
No 9
>PRK13974 thymidylate kinase; Provisional
Probab=99.89 E-value=6.4e-22 Score=164.05 Aligned_cols=182 Identities=26% Similarity=0.315 Sum_probs=128.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhccc----------ccCCCCc--hHHHHHHhccc-----c-chHHHHHHHHHHHH-H
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSS--IMSLREKFDAH-----D-SLLRRAYYSLGNYI-A 120 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~----------~~~p~~~--~~~~~~~~~~~-----~-~~~~~~~~~~~~~~-~ 120 (259)
+|+|+|++||||||+++.|++++.... ..+|+++ +..+++.+... + ......+|+++++. +
T Consensus 5 ~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~~~ 84 (212)
T PRK13974 5 FIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQHV 84 (212)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHHH
Confidence 499999999999999999999987432 2355543 35677766422 1 12334566777644 4
Q ss_pred HHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563 121 AQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF 199 (259)
Q Consensus 121 ~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~ 199 (259)
...+.+.+ .|.+||+|||++|+++|+.. +++.+ .+....+..+......||++|||+||++++++|+..|++.
T Consensus 85 ~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~---~r~~~---~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~dD 158 (212)
T PRK13974 85 SKIIRPALENGDWVISDRFSGSTLAYQGY---GRGLD---LELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKPD 158 (212)
T ss_pred HHHHHHHHHCCCEEEEcCchhhHHHHccc---cCCCC---HHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcccC
Confidence 45678876 58899999999999999742 12221 1112333333334457999999999999999999988642
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 200 TLEENELKKNAKFRELLTTIYRNMNN-PELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 200 ~~~~~~~e~~~~~~~~~~~~y~~~~~-~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
. .+. ....|.++....|..+.+ ..+.+||++++ ++++.++|.+.|.+.
T Consensus 159 ~-~e~---~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~-~eeV~~~I~~~l~~~ 207 (212)
T PRK13974 159 R-IEA---EGIEFLERVAEGFALIAEERNWKVISADQS-IETISNEIKETLLNN 207 (212)
T ss_pred c-hhh---hhHHHHHHHHHHHHHHHhcCCEEEEeCCCC-HHHHHHHHHHHHHHH
Confidence 2 221 145678888888887753 35889999987 999999999999764
No 10
>KOG3327|consensus
Probab=99.88 E-value=1.4e-21 Score=153.15 Aligned_cols=179 Identities=25% Similarity=0.278 Sum_probs=133.3
Q ss_pred cCCCCCeEEEEcCCCCcHHHHHHHHHHHhhccc-----ccCCCC-------chHHHHHHhccccchHHHHHHHHHHHHHH
Q psy16563 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL-----KSTPPS-------SIMSLREKFDAHDSLLRRAYYSLGNYIAA 121 (259)
Q Consensus 54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~-----~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (259)
.+|.. |+++|.++|||||++..|.+.+.... .+.|.- ..+++++.+ +.+.....++|++++|...
T Consensus 3 ~rg~l--iV~eGlDrsgKstQ~~~l~~~l~~~~~~~~l~~FP~Rst~iGk~i~~YL~k~~-dl~d~~iHLlFSAnRwe~~ 79 (208)
T KOG3327|consen 3 IRGAL--IVLEGLDRSGKSTQCGKLVESLIPGLDPAELLRFPERSTSIGKLIDGYLRKKS-DLPDHTIHLLFSANRWEHV 79 (208)
T ss_pred CCccE--EeeeccccCCceeehhHHHHHHHhccChHHhhhcchhcccccHHHHHHHHhcc-CCcHHHHHHHhccchhhHH
Confidence 34455 99999999999999999999886543 233331 125566655 3333445678999999998
Q ss_pred HHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCc
Q psy16563 122 QDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFT 200 (259)
Q Consensus 122 ~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~ 200 (259)
..|+..+ +|..+|+|||++|+.+|..|++ + ..++.++|..++++||+++||++||++ .+|...+|.+
T Consensus 80 ~~i~e~l~kg~~~ivDRY~~SGvAyS~AKg----l------~~dWc~~pd~gL~KPDlvlfL~v~p~~-~a~rggfG~E- 147 (208)
T KOG3327|consen 80 SLIKEKLAKGTTLIVDRYSFSGVAYSAAKG----L------DLDWCKQPDVGLPKPDLVLFLDVSPED-AARRGGFGEE- 147 (208)
T ss_pred HHHHHHHhcCCeEEEecceecchhhhhhcC----C------CcchhhCCccCCCCCCeEEEEeCCHHH-HHHhcCcchh-
Confidence 8887755 6888999999999999998753 2 246777888899999999999999999 5555555532
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 201 LEENELKKNAKFRELLTTIYRNM---NNPELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 201 ~~~~~~e~~~~~~~~~~~~y~~~---~~~~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
+.+ ..+++++....|.++ .++.+.++|++.+ +|++.+.|..+++...
T Consensus 148 rye-----~v~fqekv~~~~q~l~r~e~~~~~~vDAs~s-ve~V~~~V~~i~e~~~ 197 (208)
T KOG3327|consen 148 RYE-----TVAFQEKVLVFFQKLLRKEDLNWHVVDASKS-VEKVHQQVRSLVENVL 197 (208)
T ss_pred HHH-----HHHHHHHHHHHHHHHHhccCCCeEEEecCcc-HHHHHHHHHHHHHHhc
Confidence 221 344666666666666 3567999999977 9999999988887654
No 11
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.87 E-value=1.1e-20 Score=154.34 Aligned_cols=182 Identities=24% Similarity=0.340 Sum_probs=124.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcc---c--ccCCCCc--hHHHHHHhcccc-----chHHHHHHHHHHHH-HHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKAS---L--KSTPPSS--IMSLREKFDAHD-----SLLRRAYYSLGNYI-AAQDIK 125 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~---~--~~~p~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~i~ 125 (259)
++|+|+|++||||||+++.|++++... + +.+|... +..+++.+.... ......++.+.++. ..+.+.
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 80 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIK 80 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999533 2 2334332 345565554321 11222334444433 334455
Q ss_pred HHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHH
Q psy16563 126 QDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEEN 204 (259)
Q Consensus 126 ~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~ 204 (259)
+.+ .+..||+|||+.++.+|+.+.. +. .+.....+..+....+.||++|||++|++++++|+.+|++....
T Consensus 81 ~~~~~~~~vi~DR~~~s~~~~~~~~~---~~---~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~-- 152 (200)
T cd01672 81 PALARGKIVLSDRFVDSSLAYQGAGR---GL---GEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRD-- 152 (200)
T ss_pred HHHhCCCEEEECCCcchHHHhCcccc---CC---CHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchh--
Confidence 555 6899999999999998864321 10 01223444444455568999999999999999999999864321
Q ss_pred HHHHHHHHHHHHHHHHHhcCC---CCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563 205 ELKKNAKFRELLTTIYRNMNN---PELVFVDNSEKSVHESSNDIVELIH 250 (259)
Q Consensus 205 ~~e~~~~~~~~~~~~y~~~~~---~~~~vID~s~~~~eev~~~I~~~l~ 250 (259)
.+...++++++...|.++.. .++++||++.+ ++++.++|.+.|.
T Consensus 153 -~~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~-~e~i~~~i~~~i~ 199 (200)
T cd01672 153 -EQEGLEFHERVREGYLELAAQEPERIIVIDASQP-LEEVLAEILKAIL 199 (200)
T ss_pred -hhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCC-HHHHHHHHHHHHh
Confidence 11245678888888887742 35899999987 9999999998875
No 12
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.87 E-value=3e-21 Score=160.76 Aligned_cols=182 Identities=20% Similarity=0.198 Sum_probs=114.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCC----------CCc-hHH------HHHHhccccc----h---HHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP----------PSS-IMS------LREKFDAHDS----L---LRRAYYSL 115 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p----------~~~-~~~------~~~~~~~~~~----~---~~~~~~~~ 115 (259)
+|+|+|++||||||+++.|+++++..++.+| .+. ... +.+.|+.++. + .+..++ .
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~-~ 79 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMY-S 79 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHH-H
Confidence 4999999999999999999999987555444 111 111 1333433221 1 122233 3
Q ss_pred HH-HHHHHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcc-cccCCCCCEEEEEecCHHHHHHH
Q psy16563 116 GN-YIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW-PKDLMKPDLVIYLTVSEAIRLQR 192 (259)
Q Consensus 116 ~~-~~~~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~pdlvI~L~a~~ev~~~R 192 (259)
.+ ....+.+.+.+ .|..||+|||++|+.+|+.+....+.......+.+..++.+ ....+.||++|||++|++++.+|
T Consensus 80 ~R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~R 159 (219)
T cd02030 80 SRLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKR 159 (219)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHH
Confidence 33 33445556655 58899999999999999743211111100001112333332 33457899999999999999999
Q ss_pred HhhccCCchHHHHHHHHHHHHHHHHHHHHhcC-----C-CCeEEEeCC--CCCHhhHHHHHHH
Q psy16563 193 LSRRKNFTLEENELKKNAKFRELLTTIYRNMN-----N-PELVFVDNS--EKSVHESSNDIVE 247 (259)
Q Consensus 193 l~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~-----~-~~~~vID~s--~~~~eev~~~I~~ 247 (259)
+.+|++.... ....+|++++++.|.++. . .++++||++ .+ +++++++|..
T Consensus 160 i~~R~~~~e~----~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~~~~~-~e~i~~~I~~ 217 (219)
T cd02030 160 IKKRGDPHEM----KVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWTEAGD-TEKVVEDIEY 217 (219)
T ss_pred HHHcCCchhh----cccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCCChhh-HHHHHHHHHc
Confidence 9999854221 225678889999998772 2 368999987 44 7777777643
No 13
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.86 E-value=4.6e-20 Score=150.81 Aligned_cols=176 Identities=26% Similarity=0.392 Sum_probs=115.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcc-----cccCCCCc--hHHHHHHhc-ccc-ch---HHHHHHHHHH-HHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSS--IMSLREKFD-AHD-SL---LRRAYYSLGN-YIAAQDIK 125 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~-----~~~~p~~~--~~~~~~~~~-~~~-~~---~~~~~~~~~~-~~~~~~i~ 125 (259)
++|+|+|++||||||+++.|++.++.. ....|... ++.+++.+. ..+ .+ ....+|.+.+ +...+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~i~ 83 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDKIK 83 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999763 23344332 244555422 111 11 1233445444 34445566
Q ss_pred HHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHH
Q psy16563 126 QDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEEN 204 (259)
Q Consensus 126 ~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~ 204 (259)
+.+ .+..||+|||++++.+|.... ++.+ .+....+....... +||++|||++|++++++|+..|+..+....
T Consensus 84 ~~l~~~~~VI~DR~~~s~~ay~~~~---~~~~---~~~~~~l~~~~~~~-~~d~~i~l~~~~~~~~~R~~~r~~~~~~~~ 156 (195)
T TIGR00041 84 PALAEGKLVISDRYVFSSIAYQGGA---RGID---EDLVLELNEDALGD-MPDLTIYLDIDPEVALERLRKRGELDREEF 156 (195)
T ss_pred HHHhCCCEEEECCcccHHHHHcccc---CCCC---HHHHHHHHHHhhCC-CCCEEEEEeCCHHHHHHHHHhcCCcchHHH
Confidence 666 578999999999998886321 1110 11112222222111 499999999999999999999976432221
Q ss_pred HHHHHHHHHHHHHHHHHhcCC--CCeEEEeCCCCCHhhHHHHH
Q psy16563 205 ELKKNAKFRELLTTIYRNMNN--PELVFVDNSEKSVHESSNDI 245 (259)
Q Consensus 205 ~~e~~~~~~~~~~~~y~~~~~--~~~~vID~s~~~~eev~~~I 245 (259)
...++++++.+.|.++.. .++++||++.+ ++++.++|
T Consensus 157 ---~~~~~~~~~~~~y~~~~~~~~~~~~id~~~~-~e~v~~~i 195 (195)
T TIGR00041 157 ---EKLDFFEKVRQRYLELADKEKSIHVIDATNS-VEEVEQDI 195 (195)
T ss_pred ---HHHHHHHHHHHHHHHHHcCCCcEEEEeCCCC-HHHHHhhC
Confidence 146688888889998853 45899999987 99998764
No 14
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.85 E-value=1.2e-20 Score=154.09 Aligned_cols=176 Identities=23% Similarity=0.292 Sum_probs=109.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCC---chHHHHHHhccccc---hHHHHHHHHHHH-HHHHHHHHHhCCCc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS---SIMSLREKFDAHDS---LLRRAYYSLGNY-IAAQDIKQDLQKQP 132 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~i~~~l~~~~ 132 (259)
+|+|+|++||||||+++.|+++++..++.+|.. ....+.+.+..++. .....++...+. ...+.+.+...+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~~~~~~~ 80 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEHLSTGQG 80 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccccccccccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 499999999999999999999988877888752 12222333333321 111222222222 22222333225899
Q ss_pred EEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHH
Q psy16563 133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK 211 (259)
Q Consensus 133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~ 211 (259)
||+|||+.++.+|.......++....-.+.+..+..+. ...+.||++|||++|++++++|+.+|++.. +. ....+
T Consensus 81 vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r~~--e~--~~~~~ 156 (193)
T cd01673 81 VILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGRPE--EQ--GIPLD 156 (193)
T ss_pred eEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCcHh--hh--cCCHH
Confidence 99999999998886543322221000001122233322 235679999999999999999999997521 11 12456
Q ss_pred HHHHHHHHHHhcCC------CCeEEEeCCCCCHh
Q psy16563 212 FRELLTTIYRNMNN------PELVFVDNSEKSVH 239 (259)
Q Consensus 212 ~~~~~~~~y~~~~~------~~~~vID~s~~~~e 239 (259)
+++++.+.|..+.. .++++||+++.++.
T Consensus 157 ~~~~l~~~y~~~~~~~~~~~~~~~vid~~~~~~~ 190 (193)
T cd01673 157 YLEDLHEAYEKWFLPQMYEKAPVLIIDANEADIE 190 (193)
T ss_pred HHHHHHHHHHHHHhhccCCCCCEEEEECCccccc
Confidence 88888888888743 36899999884343
No 15
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.84 E-value=9.6e-20 Score=146.67 Aligned_cols=173 Identities=22% Similarity=0.242 Sum_probs=113.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHH---HhCCCcEE
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQ---DLQKQPVV 134 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~l~~~~vi 134 (259)
.++|+|.|+.|+||||+++.||++++..++.+..... .+.++|++++. ++-|.++.+++.++.+. ..+....+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vedn-p~L~~FY~d~~---~yaf~~QiyFL~~Rfk~~k~~~~~~~~i 79 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDN-PFLDLFYEDPE---RYAFLLQIYFLLNRFKKIKKALSDKNNI 79 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCC-hHHHHHHHhHH---HhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3569999999999999999999999988776654433 56677777653 23345555666665543 33433378
Q ss_pred EcCCccchh-hhhhhhhhccccCCCCCcchhhhhc----ccccCC-CCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563 135 MDRFWHSTS-AYGMANELVKNSDLKLPDEDDDIYS----WPKDLM-KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK 208 (259)
Q Consensus 135 ~Dr~~~s~~-~~~~~~~~~~~~~~~l~~~~~~l~~----~~~~~~-~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~ 208 (259)
.||.+.+.. .+....-..+.+....-+.+..+++ .....+ .||+.|||+||.++..+||.+||+.-. ..+...
T Consensus 80 ~drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR~~E-~~~~~~ 158 (216)
T COG1428 80 LDRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGRPFE-IDNFDE 158 (216)
T ss_pred cCcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHhCCCcc-cccccc
Confidence 898888765 3322111111111111122444444 334455 899999999999999999999996421 122222
Q ss_pred HHHHHHHHHHHHHhcC----CCCeEEEeCCC
Q psy16563 209 NAKFRELLTTIYRNMN----NPELVFVDNSE 235 (259)
Q Consensus 209 ~~~~~~~~~~~y~~~~----~~~~~vID~s~ 235 (259)
+..|++.+...|..|. .++++.||++.
T Consensus 159 ~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~ 189 (216)
T COG1428 159 NKDYLKDLHRRYDDWFENYDACPVLGIDGDS 189 (216)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCeeeeccce
Confidence 4679999999999882 25667776654
No 16
>KOG3877|consensus
Probab=99.73 E-value=1.4e-16 Score=132.39 Aligned_cols=187 Identities=21% Similarity=0.219 Sum_probs=122.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccC----------------------CCCchHHHHHHhccccc--h---HHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKST----------------------PPSSIMSLREKFDAHDS--L---LRRA 111 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~----------------------p~~~~~~~~~~~~~~~~--~---~~~~ 111 (259)
++|+++|++|||||++|+.||+.||..++.+ |+.|-..=.+.|..+|+ + .+..
T Consensus 72 kvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q~r 151 (393)
T KOG3877|consen 72 KVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQDR 151 (393)
T ss_pred eEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHHHH
Confidence 5799999999999999999999999876542 11121111245655553 1 2233
Q ss_pred HHHHHHHHHHHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhc-ccccCCCCCEEEEEecCHHHH
Q psy16563 112 YYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS-WPKDLMKPDLVIYLTVSEAIR 189 (259)
Q Consensus 112 ~~~~~~~~~~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~pdlvI~L~a~~ev~ 189 (259)
+|........+.++..+ .|+.|+++|.++|.+.|..|+.-.+-+....-..++.+.+ -...++.|.++|||++|...+
T Consensus 152 ~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv~~v 231 (393)
T KOG3877|consen 152 IYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPVNKV 231 (393)
T ss_pred HHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCcHHH
Confidence 44444445556677766 5999999999999999876643222111111222344433 134568899999999999999
Q ss_pred HHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcC------CCCeEEEeCCCC-CHhhHHHHHHHH
Q psy16563 190 LQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN------NPELVFVDNSEK-SVHESSNDIVEL 248 (259)
Q Consensus 190 ~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~------~~~~~vID~s~~-~~eev~~~I~~~ 248 (259)
.+||++||....... ....|++.+++.|++.. ...++..|.+.. +-+.|+++|..+
T Consensus 232 ~~~Ik~rg~~~Eik~---~s~aYL~diE~~YK~~fL~e~s~h~eiL~Ydwt~~gdt~~VVEDIErl 294 (393)
T KOG3877|consen 232 LENIKRRGNTDEIKT---VSEAYLKDIEESYKDSFLREYSNHSEILAYDWTKPGDTDAVVEDIERL 294 (393)
T ss_pred HHHHHhcCCCcceee---hhHHHHHHHHHHHHHHHHHHHhhhhheeeeecccCCCchhHHHhhhhh
Confidence 999999996432211 14568888888888752 345777888753 356777777553
No 17
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.71 E-value=1.2e-15 Score=123.61 Aligned_cols=164 Identities=16% Similarity=0.214 Sum_probs=93.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHH--------------hccccchHHHHHHHHHHHHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREK--------------FDAHDSLLRRAYYSLGNYIAAQD 123 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 123 (259)
.++|+|.|++||||||+++.|++.+|..++.. ++.+++. +........... ...+...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~ 74 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLST----GDLLRAEVASGSERGKQLQAIMESGDLVPLDTV----LDLLKDA 74 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeH----HHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHH----HHHHHHH
Confidence 46799999999999999999999998766532 1122221 111100000000 0122233
Q ss_pred HHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-ch
Q psy16563 124 IKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TL 201 (259)
Q Consensus 124 i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~ 201 (259)
+.+.+ .+..+|+|.|+.... +...+......||++|||++|++++.+|+.+|+.. .+
T Consensus 75 ~~~~~~~~~~~i~dg~~~~~~---------------------q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r 133 (188)
T TIGR01360 75 MVAALGTSKGFLIDGYPREVK---------------------QGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGR 133 (188)
T ss_pred HHcccCcCCeEEEeCCCCCHH---------------------HHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCC
Confidence 33333 477889997754311 11111112245899999999999999999998742 22
Q ss_pred HHHH----HHHHHHHHHHHHHHHHhcC-CCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 202 EENE----LKKNAKFRELLTTIYRNMN-NPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 202 ~~~~----~e~~~~~~~~~~~~y~~~~-~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
.++. .+....+.+.....+..+. ...+++||++.+ ++++.++|.+.++.
T Consensus 134 ~d~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~-~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 134 VDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGT-VDDVFLQVCTAIDK 187 (188)
T ss_pred CCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCC-HHHHHHHHHHHHhc
Confidence 1111 1111222222221111111 224788999987 99999999998865
No 18
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.69 E-value=3.3e-15 Score=120.86 Aligned_cols=163 Identities=12% Similarity=0.194 Sum_probs=93.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH--HHHHH----HHHHHHHHHHHHHh---CC
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYS----LGNYIAAQDIKQDL---QK 130 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~i~~~l---~~ 130 (259)
+|+|.|++||||||+|+.|++.++..+++.. +.+++.+........ ..+.. .......+.+...+ .+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~----d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 76 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAG----DLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGS 76 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECC----hHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCC
Confidence 4899999999999999999999998776531 233333222111100 00000 00111122333332 25
Q ss_pred CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHHHHHH
Q psy16563 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENELKKN 209 (259)
Q Consensus 131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~~e~~ 209 (259)
..+|+|.|+.+.... ..+..+......||++|||++|++++++|+..|+.. .+.++.
T Consensus 77 ~~~vlDg~p~~~~q~------------------~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~---- 134 (183)
T TIGR01359 77 KKFLIDGFPRNEENL------------------EAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDN---- 134 (183)
T ss_pred CcEEEeCCCCCHHHH------------------HHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCC----
Confidence 678999887643211 111111122345899999999999999999999742 111111
Q ss_pred HHHHHHHHHHHHh--------cCCC-CeEEEeCCCCCHhhHHHHHHHHH
Q psy16563 210 AKFRELLTTIYRN--------MNNP-ELVFVDNSEKSVHESSNDIVELI 249 (259)
Q Consensus 210 ~~~~~~~~~~y~~--------~~~~-~~~vID~s~~~~eev~~~I~~~l 249 (259)
.+.+++....|.+ +... .+++||++++ ++++.++|.+.+
T Consensus 135 ~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~-~~~v~~~i~~~l 182 (183)
T TIGR01359 135 IESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGS-VEEVFEDVEKIF 182 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCC-HHHHHHHHHHHh
Confidence 1122222223322 1222 4789999987 999999998876
No 19
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.68 E-value=4.5e-15 Score=114.52 Aligned_cols=162 Identities=20% Similarity=0.280 Sum_probs=96.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcccc-chHHHHHHHHHH----HHHHHHHHHHhCCCcE
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHD-SLLRRAYYSLGN----YIAAQDIKQDLQKQPV 133 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~i~~~l~~~~v 133 (259)
++|+|.|++||||||+++.||+.+|.++++. +..||++..+.+ .+..-.-++... ....+..........+
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsa----G~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~~~nv 76 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSA----GTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAKEGNV 76 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeec----cHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHHcCCe
Confidence 4699999999999999999999999988753 233444333211 111100011110 0111122222224455
Q ss_pred EEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH-HHHH
Q psy16563 134 VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-NAKF 212 (259)
Q Consensus 134 i~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~-~~~~ 212 (259)
|++.- |..|... ..+|+.|||.+|.+++.+|+..|.+.+..+...+. .++.
T Consensus 77 Vlegr---------------------------LA~Wi~k-~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~ 128 (179)
T COG1102 77 VLEGR---------------------------LAGWIVR-EYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREE 128 (179)
T ss_pred EEhhh---------------------------hHHHHhc-cccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 55521 1223221 45899999999999999999999865544332111 1122
Q ss_pred HHHHHHHHHhcCC-----CC--eEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563 213 RELLTTIYRNMNN-----PE--LVFVDNSEKSVHESSNDIVELIHNLPM 254 (259)
Q Consensus 213 ~~~~~~~y~~~~~-----~~--~~vID~s~~~~eev~~~I~~~l~~~~~ 254 (259)
.+ ...|.+++. -. .++||++.-+++++..-+...++....
T Consensus 129 se--~kRY~~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~~ 175 (179)
T COG1102 129 SE--KKRYKKIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALSI 175 (179)
T ss_pred HH--HHHHHHHhCCCCccceeeEEEEecccCCHHHHHHHHHHHHHhhcc
Confidence 22 234666542 11 589999998899999999998887643
No 20
>PRK14532 adenylate kinase; Provisional
Probab=99.66 E-value=7.1e-15 Score=119.50 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=94.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH--HHHHHH----HHHHHHHHHHHH----hC
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYSL----GNYIAAQDIKQD----LQ 129 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~i~~~----l~ 129 (259)
.|+|.|++||||||+++.||+.++..+++. .+.+++.+........ ..++.. ........+... ..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~----~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 77 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST----GDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEA 77 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC----cHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc
Confidence 389999999999999999999999887753 2233333221111100 000000 001112222222 23
Q ss_pred CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhccC-CchHHHHHH
Q psy16563 130 KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRKN-FTLEENELK 207 (259)
Q Consensus 130 ~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~~-~~~~~~~~e 207 (259)
+..+|+|.|+.+... ...+..++ .....||++|||++|++++.+|+..|.. ..+.++.
T Consensus 78 ~~g~vldg~pr~~~q------------------~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~-- 137 (188)
T PRK14532 78 AGGAIFDGFPRTVAQ------------------AEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDN-- 137 (188)
T ss_pred cCcEEEeCCCCCHHH------------------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCC--
Confidence 667889988754321 11111111 1234599999999999999999998852 1222211
Q ss_pred HHHHHHHHHHHHHHhc-------CCC-CeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 208 KNAKFRELLTTIYRNM-------NNP-ELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 208 ~~~~~~~~~~~~y~~~-------~~~-~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
...+.+++...|.+. ... .++.||++.+ +++++++|.+.|..
T Consensus 138 -~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~-~eev~~~I~~~l~~ 187 (188)
T PRK14532 138 -PEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGS-IEAVAASIDAALEG 187 (188)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCC-HHHHHHHHHHHHhc
Confidence 112223333332221 122 3788999887 99999999998864
No 21
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.66 E-value=2.6e-15 Score=117.34 Aligned_cols=150 Identities=19% Similarity=0.248 Sum_probs=91.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchH----HHHHHHHHHHHHHHHHHHHhCCCcEE
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLL----RRAYYSLGNYIAAQDIKQDLQKQPVV 134 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~~~vi 134 (259)
|+|+|+|+||+||||+++.|+ .+|..++. +.+...+++-+. .+..+.++...+...+.+.+.....|
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~--------l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~~~~~I 71 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIE--------LNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLREGSGI 71 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceee--------HHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhccCCeE
Confidence 569999999999999999999 88877652 222222211000 00011112223344445544445556
Q ss_pred EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHH-HHHHHHHHHH
Q psy16563 135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEE-NELKKNAKFR 213 (259)
Q Consensus 135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~-~~~e~~~~~~ 213 (259)
.|..+.. .++.+|++|.|.|+|+++.+|+++||-..... .+.+ .+.+
T Consensus 72 vd~H~~h------------------------------l~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENve--AEi~ 119 (180)
T COG1936 72 VDSHLSH------------------------------LLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVE--AEIL 119 (180)
T ss_pred eechhhh------------------------------cCCCCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHH--HHHH
Confidence 6622110 01237999999999999999999999432221 1111 1122
Q ss_pred H-HHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 214 E-LLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 214 ~-~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
. -+.++.+.+ ++++.||+++.++++++++|.+++..
T Consensus 120 ~vi~~EA~E~~--~~v~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 120 DVILIEAVERF--EAVIEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred HHHHHHHHHhc--CceEEEECCCCCHHHHHHHHHHHHcc
Confidence 1 223333333 56899999999999999999999984
No 22
>PRK14531 adenylate kinase; Provisional
Probab=99.65 E-value=1.4e-14 Score=117.39 Aligned_cols=165 Identities=18% Similarity=0.223 Sum_probs=92.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH--HHHHH----HHHHHHHHHHHHHh---CC
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYS----LGNYIAAQDIKQDL---QK 130 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~i~~~l---~~ 130 (259)
.|+|.|+|||||||+++.|++++|..+++. ++.+++.+.....+.. ..+.. ..-......+...+ .+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~----gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~ 79 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLST----GDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNS 79 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEec----ccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccC
Confidence 499999999999999999999999887753 1223322211111100 00000 00001111122111 34
Q ss_pred CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccc-cCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH-
Q psy16563 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK-DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK- 208 (259)
Q Consensus 131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~- 208 (259)
..+|+|.|+.+...- ..+..++. ....|+.+|+|+||++++.+|+..|+..+..+.....
T Consensus 80 ~g~ilDGfpr~~~q~------------------~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~~e~i~~R 141 (183)
T PRK14531 80 GGWLLDGFPRTVAQA------------------EALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDNEAVIRNR 141 (183)
T ss_pred CcEEEeCCCCCHHHH------------------HHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCCHHHHHHH
Confidence 567889887653211 11111111 1234788999999999999999999754322211111
Q ss_pred HHHHHHH---HHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563 209 NAKFREL---LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249 (259)
Q Consensus 209 ~~~~~~~---~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l 249 (259)
...|.+. +.+.|.. ...++.||++++ +++++++|.+.|
T Consensus 142 l~~y~~~~~pv~~~y~~--~~~~~~id~~~~-~~~v~~~i~~~l 182 (183)
T PRK14531 142 LEVYREKTAPLIDHYRQ--RGLLQSVEAQGS-IEAITERIEKVL 182 (183)
T ss_pred HHHHHHHHHHHHHHHHh--cCCEEEEECCCC-HHHHHHHHHHHh
Confidence 1112222 2222321 224799999998 999999998876
No 23
>PLN02200 adenylate kinase family protein
Probab=99.64 E-value=3.5e-14 Score=119.21 Aligned_cols=168 Identities=11% Similarity=0.127 Sum_probs=97.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHH--HHHH----HHHHHHHHHHHHh--
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRA--YYSL----GNYIAAQDIKQDL-- 128 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~i~~~l-- 128 (259)
.+.+|+|.|+|||||||+|+.|++.+|..+++. ++.+++.+.......... .... ........+...+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~----gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~ 117 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLSA----GDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMES 117 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEc----cHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Confidence 345799999999999999999999999877643 233444332222110000 0000 0011111222222
Q ss_pred -CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHH
Q psy16563 129 -QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELK 207 (259)
Q Consensus 129 -~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e 207 (259)
.+..+|+|.|+...... ..+.... ...||++|+|++|++++.+|+.+|+.. +.++
T Consensus 118 ~~~~~~ILDG~Prt~~q~------------------~~l~~~~--~~~pd~vi~Ld~~~e~~~~Rl~~R~~~-r~dd--- 173 (234)
T PLN02200 118 SDNNKFLIDGFPRTEENR------------------IAFERII--GAEPNVVLFFDCPEEEMVKRVLNRNQG-RVDD--- 173 (234)
T ss_pred CCCCeEEecCCcccHHHH------------------HHHHHHh--ccCCCEEEEEECCHHHHHHHHHcCcCC-CCCC---
Confidence 24568899876532111 1111111 135899999999999999999998631 1111
Q ss_pred HHHHHHHHHHHHHHhc--------CC-CCeEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563 208 KNAKFRELLTTIYRNM--------NN-PELVFVDNSEKSVHESSNDIVELIHNLPM 254 (259)
Q Consensus 208 ~~~~~~~~~~~~y~~~--------~~-~~~~vID~s~~~~eev~~~I~~~l~~~~~ 254 (259)
..+..++..+.|.+. .. ..++.||++++ ++++++.|.+.+.....
T Consensus 174 -~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~-~eeV~~~v~~~l~~~~~ 227 (234)
T PLN02200 174 -NIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGT-VDEIFEQVRPIFAACEA 227 (234)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCC-HHHHHHHHHHHHHHcCC
Confidence 111222222223222 12 24799999997 99999999999987653
No 24
>PRK13808 adenylate kinase; Provisional
Probab=99.64 E-value=1e-14 Score=127.15 Aligned_cols=167 Identities=19% Similarity=0.228 Sum_probs=96.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH--HHHHHH----HHH----HHHHHHHHHhC
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYSL----GNY----IAAQDIKQDLQ 129 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~----~~~~~i~~~l~ 129 (259)
-|+|.||+||||||+++.|++.++..+++. ++.+++.+........ ..++.. ... .+.+.+.....
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~----gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~ 77 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST----GDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDA 77 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc----cHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc
Confidence 389999999999999999999999877753 2334443322211100 000000 011 12222222112
Q ss_pred CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcc-cccCCCCCEEEEEecCHHHHHHHHhhcc-------CCch
Q psy16563 130 KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW-PKDLMKPDLVIYLTVSEAIRLQRLSRRK-------NFTL 201 (259)
Q Consensus 130 ~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~pdlvI~L~a~~ev~~~Rl~~R~-------~~~~ 201 (259)
...+|+|.|+...... ..+... ......||++|||++|++++++|+..|. ...+
T Consensus 78 ~~G~ILDGFPRt~~QA------------------~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R 139 (333)
T PRK13808 78 ANGFILDGFPRTVPQA------------------EALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVR 139 (333)
T ss_pred cCCEEEeCCCCCHHHH------------------HHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccC
Confidence 4568888776543211 111111 1123569999999999999999999872 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-------C-CC-CeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 202 EENELKKNAKFRELLTTIYRNM-------N-NP-ELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 202 ~~~~~e~~~~~~~~~~~~y~~~-------~-~~-~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
.+++ ...+.+++ ..|.+. + .. .++.||++.+ +++|+++|...|..+.
T Consensus 140 ~DD~---~E~i~kRL-~~Y~~~t~PLl~~Y~e~~~lv~IDa~~s-iEEV~eeI~~~L~~~~ 195 (333)
T PRK13808 140 ADDT---PEVLAKRL-ASYRAQTEPLVHYYSEKRKLLTVDGMMT-IDEVTREIGRVLAAVG 195 (333)
T ss_pred CCCC---HHHHHHHH-HHHHHHhHHHHHHhhccCcEEEEECCCC-HHHHHHHHHHHHHHHh
Confidence 2221 11222333 334332 1 22 3789999988 9999999999998754
No 25
>PRK14527 adenylate kinase; Provisional
Probab=99.63 E-value=6.1e-14 Score=114.37 Aligned_cols=165 Identities=18% Similarity=0.215 Sum_probs=93.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHH----HHHHHHHHHHHHHh---
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYS----LGNYIAAQDIKQDL--- 128 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~i~~~l--- 128 (259)
.++|+|.|++||||||+++.|++.++..+++. .+-+++.+.....+... .++. .........+...+
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~----gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~ 81 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLST----GDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGM 81 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc----cHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Confidence 45699999999999999999999999877643 22333333222111110 0000 00011222233322
Q ss_pred CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccc-cCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHHH
Q psy16563 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK-DLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENEL 206 (259)
Q Consensus 129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~~ 206 (259)
.+..+|+|.|+.+.... ..+..++. ....++.+|||++|++++.+|+.+|+.. .+.++.
T Consensus 82 ~~~~~VlDGfpr~~~q~------------------~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~- 142 (191)
T PRK14527 82 EPVRVIFDGFPRTLAQA------------------EALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDN- 142 (191)
T ss_pred CCCcEEEcCCCCCHHHH------------------HHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCC-
Confidence 13568999876542111 11111111 1234788999999999999999999632 222221
Q ss_pred HHHHHHHHHHHHHHHhc--------CC-CCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563 207 KKNAKFRELLTTIYRNM--------NN-PELVFVDNSEKSVHESSNDIVELI 249 (259)
Q Consensus 207 e~~~~~~~~~~~~y~~~--------~~-~~~~vID~s~~~~eev~~~I~~~l 249 (259)
.+..++..+.|.+. .. ..++.||++++ +++++++|...|
T Consensus 143 ---~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~-~~~v~~~i~~~l 190 (191)
T PRK14527 143 ---EETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGT-PDEVYARILKAL 190 (191)
T ss_pred ---HHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCC-HHHHHHHHHHhh
Confidence 11222222222221 12 23789999998 999999998876
No 26
>PHA03132 thymidine kinase; Provisional
Probab=99.63 E-value=7.9e-15 Score=135.58 Aligned_cols=156 Identities=15% Similarity=0.147 Sum_probs=92.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcc--cccCCCCc--------hHHHHHHhccc--cch--HH-----HHHHH-----
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKAS--LKSTPPSS--------IMSLREKFDAH--DSL--LR-----RAYYS----- 114 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~--~~~~p~~~--------~~~~~~~~~~~--~~~--~~-----~~~~~----- 114 (259)
++|+|+|++||||||+++.|+++++.. .+.+|... +..+++.+... ..+ .. ...|+
T Consensus 258 ~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~Pfl~ 337 (580)
T PHA03132 258 CFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATPFRA 337 (580)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHHHH
Confidence 459999999999999999999998333 45677642 35555554321 111 00 11122
Q ss_pred -HHH-HHH---HHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccc--cCCCCCEEEEEecCH
Q psy16563 115 -LGN-YIA---AQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK--DLMKPDLVIYLTVSE 186 (259)
Q Consensus 115 -~~~-~~~---~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~pdlvI~L~a~~ 186 (259)
+++ +.. ...+.+.+ .+.+||+|||+.++.++.....+..+. . ....+..+.. ....||++|||++++
T Consensus 338 ~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~-l----s~~e~~~lL~~~~~~~PDLiIyLdv~p 412 (580)
T PHA03132 338 LATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGM-L----SFSHFIQLLSTFRAHEGDVIVLLKLNS 412 (580)
T ss_pred HHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhcccccc-C----CHHHHHHHHHHhcccCCCEEEEEeCCH
Confidence 111 111 11122233 478999999999998743221112221 1 1222222221 124599999999999
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhc
Q psy16563 187 AIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM 223 (259)
Q Consensus 187 ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~ 223 (259)
+++++|+.+|++. .+. ....+|++++++.|..+
T Consensus 413 e~alkRIkkRgR~--~E~--~IdleYL~rLre~Y~~l 445 (580)
T PHA03132 413 EENLRRVKKRGRK--EEK--GINLTYLKELNWAYHAV 445 (580)
T ss_pred HHHHHHHHhcCch--hhh--cCCHHHHHHHHHHHHHH
Confidence 9999999999853 111 01456888888887765
No 27
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.61 E-value=9.7e-15 Score=115.16 Aligned_cols=157 Identities=19% Similarity=0.296 Sum_probs=96.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHH-----HHHHHHHhC-CCcEE
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA-----AQDIKQDLQ-KQPVV 134 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~l~-~~~vi 134 (259)
|++.|++||||||+++.||+.|+..++.... .+-+... ..-..+|....+.. .+.+...+. +..||
T Consensus 5 IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~----~Ie~~~g----~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~Vi 76 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAKALNLPFIDTDQ----EIEKRTG----MSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVI 76 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHHHcCCCcccchH----HHHHHHC----cCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEE
Confidence 9999999999999999999999999986532 1111111 11122333332222 233444443 33454
Q ss_pred EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc-CCchH-HHHHHHHHHH
Q psy16563 135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK-NFTLE-ENELKKNAKF 212 (259)
Q Consensus 135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~-~~~~~-~~~~e~~~~~ 212 (259)
.- |||. +.-++.+..+... ..+|||++|+|+.++|+.... ++--. .+..+...+.
T Consensus 77 aT---------------GGG~-v~~~enr~~l~~~-------g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L 133 (172)
T COG0703 77 AT---------------GGGA-VLSEENRNLLKKR-------GIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEEL 133 (172)
T ss_pred EC---------------CCcc-ccCHHHHHHHHhC-------CeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHH
Confidence 43 6665 2223334443321 269999999999999998322 21100 1111224456
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 213 RELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 213 ~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
+++....|++.+ .++++++..+ ++++++|.+.+...
T Consensus 134 ~~~R~~~Y~e~a---~~~~~~~~~~-~~v~~~i~~~l~~~ 169 (172)
T COG0703 134 LEERQPLYREVA---DFIIDTDDRS-EEVVEEILEALEGS 169 (172)
T ss_pred HHHHHHHHHHhC---cEEecCCCCc-HHHHHHHHHHHHHh
Confidence 677777787764 4999999985 99999999988754
No 28
>PRK02496 adk adenylate kinase; Provisional
Probab=99.60 E-value=1.8e-13 Score=110.95 Aligned_cols=161 Identities=17% Similarity=0.237 Sum_probs=92.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH--HHHHH----HHHHHHHHHHHHHh----C
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYS----LGNYIAAQDIKQDL----Q 129 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~i~~~l----~ 129 (259)
.|+|.|++||||||+++.|++.++..++.. ++.+++.+.....+.. ..+.. .........+...+ .
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~----~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~ 78 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST----GDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDA 78 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh----HHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc
Confidence 389999999999999999999998776642 2233333322211100 00000 00111222222222 2
Q ss_pred CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccc-cCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563 130 KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK-DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK 208 (259)
Q Consensus 130 ~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~ 208 (259)
...+|+|.|+.+.... ..+...+. ....||++|+|++|++++.+|+..|++.+..+
T Consensus 79 ~~g~vldGfPr~~~q~------------------~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~----- 135 (184)
T PRK02496 79 ANGWILDGFPRKVTQA------------------AFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDDTE----- 135 (184)
T ss_pred cCCEEEeCCCCCHHHH------------------HHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCCCH-----
Confidence 3467888776543111 11111111 12358999999999999999999997543221
Q ss_pred HHHHHHHHHHHHHh-------c-CC-CCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563 209 NAKFRELLTTIYRN-------M-NN-PELVFVDNSEKSVHESSNDIVELIH 250 (259)
Q Consensus 209 ~~~~~~~~~~~y~~-------~-~~-~~~~vID~s~~~~eev~~~I~~~l~ 250 (259)
+++++....|.+ . .. ..++.||++++ ++++.++|.+.|.
T Consensus 136 --~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~-~~~V~~~i~~~l~ 183 (184)
T PRK02496 136 --EVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQS-VEAVTTELKAALA 183 (184)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCC-HHHHHHHHHHHhC
Confidence 122333333333 1 12 24789999998 9999999998773
No 29
>KOG3079|consensus
Probab=99.60 E-value=8.3e-14 Score=109.74 Aligned_cols=165 Identities=16% Similarity=0.251 Sum_probs=101.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcc-ccchHH--HHHHHH----HHHHHHHHHHHHh-
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA-HDSLLR--RAYYSL----GNYIAAQDIKQDL- 128 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~--~~~~~~----~~~~~~~~i~~~l- 128 (259)
+.+||.+.|+|||||.|++..+++.++..|++. ++-+|+.... ..+... ..++.. ........++..+
T Consensus 7 ~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSa----GdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~ 82 (195)
T KOG3079|consen 7 KPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSA----GDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMR 82 (195)
T ss_pred CCCEEEEEcCCCCCcchHHHHHHHHcCceeecH----HHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHH
Confidence 478899999999999999999999999887743 4555655554 222110 011110 0112222233222
Q ss_pred ---CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCC-CCCEEEEEecCHHHHHHHHhhccCC-chHH
Q psy16563 129 ---QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLM-KPDLVIYLTVSEAIRLQRLSRRKNF-TLEE 203 (259)
Q Consensus 129 ---~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~ 203 (259)
.....++|.|+.. .+++..|-+... .|++++|++|++|++.+|+..|+.. .+.+
T Consensus 83 ~~~~~~~fLIDGyPR~---------------------~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~D 141 (195)
T KOG3079|consen 83 SSGDSNGFLIDGYPRN---------------------VDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSD 141 (195)
T ss_pred hcCCCCeEEecCCCCC---------------------hHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCC
Confidence 2233677766543 333333333333 5899999999999999999999843 2333
Q ss_pred HHHHHHHHHHHHHHHHHHhc-------CC--CCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 204 NELKKNAKFRELLTTIYRNM-------NN--PELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 204 ~~~e~~~~~~~~~~~~y~~~-------~~--~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
++ .+-.++..+.|.+. .+ .....||++.+ +++++.++.+.+..
T Consensus 142 Dn----~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~-~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 142 DN----EESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERS-VDDVFEEVVTAIDA 193 (195)
T ss_pred Cc----hHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCC-HHHHHHHHHHHhhc
Confidence 32 22223333333332 11 25789999998 99999999998865
No 30
>PRK14528 adenylate kinase; Provisional
Probab=99.59 E-value=1.2e-13 Score=112.21 Aligned_cols=166 Identities=19% Similarity=0.220 Sum_probs=91.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH--HHHHHH----HHH----HHHHHHHHHhC
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYSL----GNY----IAAQDIKQDLQ 129 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~----~~~~~i~~~l~ 129 (259)
.|+|.|+|||||||+++.|++.++..++.. .+.+++.+..+..+.. ..+... ... .+.+.+.....
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~----~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~ 78 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST----GDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADC 78 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC----CHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCc
Confidence 489999999999999999999999877643 2333443332222111 011100 001 11222222112
Q ss_pred CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHH--
Q psy16563 130 KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENE-- 205 (259)
Q Consensus 130 ~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~-- 205 (259)
...+|+|.|+.+... ...+..++ .....||++|+|++|++++.+|+..|... .+.++.
T Consensus 79 ~~g~viDG~Pr~~~q------------------a~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e 140 (186)
T PRK14528 79 KNGFLLDGFPRTVEQ------------------ADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEA 140 (186)
T ss_pred cCcEEEeCCCCCHHH------------------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHH
Confidence 356788876554211 11122221 12345999999999999999999988411 111111
Q ss_pred --HHHHHHHHHHHHHHHHhcCC-CCeEEEeCCCCCHhhHHHHHHHH
Q psy16563 206 --LKKNAKFRELLTTIYRNMNN-PELVFVDNSEKSVHESSNDIVEL 248 (259)
Q Consensus 206 --~e~~~~~~~~~~~~y~~~~~-~~~~vID~s~~~~eev~~~I~~~ 248 (259)
......|........+-+.. ..++.||++++ ++++++.|.+.
T Consensus 141 ~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~-~~~v~~~~~~~ 185 (186)
T PRK14528 141 TIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGS-LEEVTSLIQKE 185 (186)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCC-HHHHHHHHHHh
Confidence 11112222222222221222 24899999998 99999998764
No 31
>PRK14530 adenylate kinase; Provisional
Probab=99.58 E-value=1.6e-13 Score=114.02 Aligned_cols=164 Identities=23% Similarity=0.311 Sum_probs=91.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcc-----ccchH-HHHHHHH----HHHHHHHHHHHHh-
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA-----HDSLL-RRAYYSL----GNYIAAQDIKQDL- 128 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~-----~~~~~-~~~~~~~----~~~~~~~~i~~~l- 128 (259)
.|+|.|++||||||+++.|++.++..++.. ++.+++.... ...+. ....+.. ........+...+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~----g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~ 80 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT----GDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALS 80 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec----cHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 499999999999999999999999877643 2233332210 00000 0000000 0112223333333
Q ss_pred CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC---------
Q psy16563 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF--------- 199 (259)
Q Consensus 129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~--------- 199 (259)
....+|+|.|+.+.. ....+.. ...++++|||++|++++++|+.+|...
T Consensus 81 ~~~~~IldG~pr~~~------------------q~~~l~~----~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~ 138 (215)
T PRK14530 81 DADGFVLDGYPRNLE------------------QAEYLES----ITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHV 138 (215)
T ss_pred cCCCEEEcCCCCCHH------------------HHHHHHH----hcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCcccc
Confidence 345677886543310 1111211 134899999999999999999888521
Q ss_pred -------------------chHHHHHH----HHHHHHH---HHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 200 -------------------TLEENELK----KNAKFRE---LLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 200 -------------------~~~~~~~e----~~~~~~~---~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
.+.++..+ ....|.+ .+.+.|.+ ...++.||++++ ++++++.|.+.|...
T Consensus 139 ~~~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~--~~~~~~id~~~~-~~~v~~~i~~~l~~~ 214 (215)
T PRK14530 139 EFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRD--QGVLVEVDGEQT-PDEVWADIQDAIDDA 214 (215)
T ss_pred CCCCCcccccCcccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh--CCcEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 00111000 0111111 12222222 124789999998 999999999998753
No 32
>PLN02674 adenylate kinase
Probab=99.58 E-value=1.7e-13 Score=114.99 Aligned_cols=165 Identities=14% Similarity=0.152 Sum_probs=96.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHHH----HHHHHHHHHHHHh----
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYSL----GNYIAAQDIKQDL---- 128 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~i~~~l---- 128 (259)
+.|+|.|+|||||||+++.|++.++..+++. ++.+|+.+..+..+... .++.. ........+...+
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~----GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~ 107 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLAT----GDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 107 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEch----hHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcC
Confidence 4599999999999999999999999888753 44555544333222110 01110 0112222333332
Q ss_pred CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhccCC--------
Q psy16563 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRKNF-------- 199 (259)
Q Consensus 129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-------- 199 (259)
.+..+|+|.|+.+.... ..+..++ .....+|.+|+|++|.+++.+|+..|.-.
T Consensus 108 ~~~g~ilDGfPRt~~Qa------------------~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn 169 (244)
T PLN02674 108 CQKGFILDGFPRTVVQA------------------QKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYH 169 (244)
T ss_pred cCCcEEEeCCCCCHHHH------------------HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccc
Confidence 24678899887643211 1111111 11245899999999999999999988310
Q ss_pred --------------------chHHHHHHHHHHHHHHHHHHHHhc--------CC-CCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563 200 --------------------TLEENELKKNAKFRELLTTIYRNM--------NN-PELVFVDNSEKSVHESSNDIVELIH 250 (259)
Q Consensus 200 --------------------~~~~~~~e~~~~~~~~~~~~y~~~--------~~-~~~~vID~s~~~~eev~~~I~~~l~ 250 (259)
.+.++. .+..++..+.|.+. .. ..++.||++++ +++++++|..+|.
T Consensus 170 ~~~~pp~~~~~~~~~g~~L~~R~DD~----~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~-~~eV~~~i~~~l~ 244 (244)
T PLN02674 170 TKFAPPKVPGVDDVTGEPLIQRKDDT----AAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKP-PKEVTAEVQKALS 244 (244)
T ss_pred cccCCCcccCcccccCCccccCCCCC----HHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCC-HHHHHHHHHHHhC
Confidence 011111 12222222223322 11 23789999998 9999999998763
No 33
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.58 E-value=1.9e-13 Score=113.11 Aligned_cols=160 Identities=25% Similarity=0.314 Sum_probs=90.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHHH----HHHHHHHHHHHHh-----C
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYSL----GNYIAAQDIKQDL-----Q 129 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~i~~~l-----~ 129 (259)
|+|.|++||||||+|+.|++.++..+++. ++-+++.+.....+... .+... ......+.+...+ .
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~----gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~ 77 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST----GDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDN 77 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh----hHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCccc
Confidence 88999999999999999999999887753 22333333222111000 00000 0011222222222 2
Q ss_pred CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC----------
Q psy16563 130 KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF---------- 199 (259)
Q Consensus 130 ~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~---------- 199 (259)
+..+|+|.|+.+... ...+..+.. ..|+++|+|++|++++++|+.+|.-.
T Consensus 78 ~~~~ilDGfPrt~~Q------------------a~~l~~~~~--~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~ 137 (210)
T TIGR01351 78 ENGFILDGFPRTLSQ------------------AEALDALLK--EKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLK 137 (210)
T ss_pred CCcEEEeCCCCCHHH------------------HHHHHHHhc--cCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccc
Confidence 467889977654211 111111111 05899999999999999999998500
Q ss_pred ------------------chHHHHHHHHHHHHHHHHHHHHhc--------CC-CCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563 200 ------------------TLEENELKKNAKFRELLTTIYRNM--------NN-PELVFVDNSEKSVHESSNDIVELI 249 (259)
Q Consensus 200 ------------------~~~~~~~e~~~~~~~~~~~~y~~~--------~~-~~~~vID~s~~~~eev~~~I~~~l 249 (259)
.+.++. .+..++....|.+. .. ..++.||++++ +++++++|.+.|
T Consensus 138 ~~~p~~~~~~~~~~~~l~~R~dD~----~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~-~~~v~~~i~~~l 209 (210)
T TIGR01351 138 FNPPKVPGCDDCTGELLIQREDDT----EEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGP-IDEVWKRILEAL 209 (210)
T ss_pred cCCCccCCcCcccCCccccCCCCC----HHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCC-HHHHHHHHHHhh
Confidence 011111 11222222223221 11 24788999997 999999998876
No 34
>PRK03839 putative kinase; Provisional
Probab=99.57 E-value=1.6e-13 Score=110.85 Aligned_cols=151 Identities=23% Similarity=0.268 Sum_probs=86.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHH-hccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEEcCC
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREK-FDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRF 138 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~Dr~ 138 (259)
.|+|.|++||||||+++.|++.++..++... +.+++. +... .... .......+...+.....+..+|+|.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d----~~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~~~~~~~vIidG~ 73 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT----EFALKKGIGEE--KDDE--MEIDFDKLAYFIEEEFKEKNVVLDGH 73 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh----hhhhhcCCccc--CChh--hhcCHHHHHHHHHHhccCCCEEEEec
Confidence 5999999999999999999999998876531 111110 0000 0000 00001122222322233455777742
Q ss_pred ccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHH-HH
Q psy16563 139 WHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL-LT 217 (259)
Q Consensus 139 ~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~-~~ 217 (259)
.. .+..+|.+|||+++++++.+|+..|+........ .....+.+. +.
T Consensus 74 ~~-------------------------------~l~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~-~~~~~~~~~~~~ 121 (180)
T PRK03839 74 LS-------------------------------HLLPVDYVIVLRAHPKIIKERLKERGYSKKKILE-NVEAELVDVCLC 121 (180)
T ss_pred cc-------------------------------cccCCCEEEEEECCHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHH
Confidence 10 0124789999999999999999988732111100 000111111 11
Q ss_pred HHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 218 TIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 218 ~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
+.|.+ ..++++||+++.++++++++|.+.+...
T Consensus 122 ~~~~~--r~~~~~Id~~~~s~eev~~~I~~~l~~~ 154 (180)
T PRK03839 122 EALEE--KEKVIEVDTTGKTPEEVVEEILELIKSG 154 (180)
T ss_pred HHHHh--cCCEEEEECCCCCHHHHHHHHHHHHhcC
Confidence 22221 2357899998766999999999999754
No 35
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.56 E-value=2.4e-13 Score=112.92 Aligned_cols=167 Identities=23% Similarity=0.267 Sum_probs=92.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHHH----HHHHHHHHHHHHh----C
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYSL----GNYIAAQDIKQDL----Q 129 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~i~~~l----~ 129 (259)
.|+|.|++||||||+++.||+.++..+++.. +.+++.+......... .++.. ........+...+ .
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~----dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~ 77 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTG----DMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDC 77 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECC----ccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCc
Confidence 4999999999999999999999998877531 2223222221111000 00000 0011222222222 2
Q ss_pred CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccc-cCCCCCEEEEEecCHHHHHHHHhhccCC---------
Q psy16563 130 KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK-DLMKPDLVIYLTVSEAIRLQRLSRRKNF--------- 199 (259)
Q Consensus 130 ~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~pdlvI~L~a~~ev~~~Rl~~R~~~--------- 199 (259)
+..+|+|.|+..... ...+..++. ....++.+|+|+||.+++++|+..|...
T Consensus 78 ~~g~VlDGfPr~~~q------------------a~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~ 139 (215)
T PRK00279 78 KNGFLLDGFPRTIPQ------------------AEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHV 139 (215)
T ss_pred cCCEEEecCCCCHHH------------------HHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccc
Confidence 347889987654211 111211211 1234789999999999999999988410
Q ss_pred -------------------chHHH-------HHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 200 -------------------TLEEN-------ELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 200 -------------------~~~~~-------~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
.+.++ ++.........+.+.|... ..++.||++++ +++++++|.+.|..
T Consensus 140 ~~~~p~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~--~~~~~id~~~~-~~~v~~~i~~~l~~ 214 (215)
T PRK00279 140 KFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKK--GKLKKIDGTGS-IDEVFADILKALGK 214 (215)
T ss_pred cCCCCCCcCcCcCCCCcccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhC--CCEEEEECCCC-HHHHHHHHHHHHhc
Confidence 01111 1111111112223333221 23789999988 99999999999864
No 36
>PRK13949 shikimate kinase; Provisional
Probab=99.56 E-value=7.9e-14 Score=111.49 Aligned_cols=161 Identities=12% Similarity=0.109 Sum_probs=83.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcccc-chHHHHHHHHHHHHHHHHHHHHh-CCCcEEEcCC
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHD-SLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRF 138 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~Dr~ 138 (259)
|+|.|++||||||+++.|++.++..++.... .+.+.+.... .+....-....+......+.... ....||..
T Consensus 4 I~liG~~GsGKstl~~~La~~l~~~~id~D~----~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~-- 77 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELGLSFIDLDF----FIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVIST-- 77 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeecccH----HHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEc--
Confidence 9999999999999999999999988775421 1111111110 00000000000112222333322 23445544
Q ss_pred ccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhc--cCCchHHHHHHHHHHHHHHH
Q psy16563 139 WHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRR--KNFTLEENELKKNAKFRELL 216 (259)
Q Consensus 139 ~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R--~~~~~~~~~~e~~~~~~~~~ 216 (259)
|+|. +..++....+ ...+++|||++|++++.+|+..+ +++.......+...+++..+
T Consensus 78 -------------Ggg~-~~~~~~~~~l-------~~~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l 136 (169)
T PRK13949 78 -------------GGGA-PCFFDNMELM-------NASGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEA 136 (169)
T ss_pred -------------CCcc-cCCHHHHHHH-------HhCCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHH
Confidence 3333 1111112222 22467999999999999999753 22211000001112222222
Q ss_pred HHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHH
Q psy16563 217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVEL 248 (259)
Q Consensus 217 ~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~ 248 (259)
.+.+..++....++||+++.++++++++|.+.
T Consensus 137 ~~~R~~~Y~~ad~~id~~~~~~~e~~~~I~~~ 168 (169)
T PRK13949 137 LEKRAPFYRQAKIIFNADKLEDESQIEQLVQR 168 (169)
T ss_pred HHHHHHHHHhCCEEEECCCCCHHHHHHHHHHh
Confidence 22333332212388999998799999988764
No 37
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.53 E-value=2.7e-13 Score=108.74 Aligned_cols=165 Identities=21% Similarity=0.227 Sum_probs=101.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcccc-chHHHHHHHHHHHHHHHHHHHHhCCCcEEEcC
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHD-SLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDR 137 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~Dr 137 (259)
|+|.++|+|||||||+++.||+.|.......+...-+..+-...++. ......+......-.++.+-.+++...||+|.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalkn~~VIvDd 81 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALKNYLVIVDD 81 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhcceEEEEec
Confidence 67999999999999999999999987755443322222221111111 11111222222222333444556788999994
Q ss_pred CccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHH
Q psy16563 138 FWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217 (259)
Q Consensus 138 ~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~ 217 (259)
..+ |.. ..++|+...+....+..+|||.||+++|.+|-..|+.+-+.+ .++++.
T Consensus 82 tNY----yks--------------mRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip~E--------vl~qly 135 (261)
T COG4088 82 TNY----YKS--------------MRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIPEE--------VLRQLY 135 (261)
T ss_pred ccH----HHH--------------HHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCCCCCHH--------HHHHHH
Confidence 321 111 135666666666778889999999999999998888654332 445666
Q ss_pred HHHHhcC-----CCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563 218 TIYRNMN-----NPELVFVDNSEKSVHESSNDIVELIH 250 (259)
Q Consensus 218 ~~y~~~~-----~~~~~vID~s~~~~eev~~~I~~~l~ 250 (259)
+.|++-. +.+.++||++.. ..+..+.|...+.
T Consensus 136 ~RfEePn~~~rWDspll~id~~d~-~t~~IDfiesvl~ 172 (261)
T COG4088 136 DRFEEPNPDRRWDSPLLVIDDSDV-STEVIDFIESVLR 172 (261)
T ss_pred HhhcCCCCCccccCceEEEecccc-cccchhHHHHHHH
Confidence 6666542 346788887655 5666666666654
No 38
>PRK04182 cytidylate kinase; Provisional
Probab=99.53 E-value=1.3e-12 Score=105.09 Aligned_cols=160 Identities=19% Similarity=0.179 Sum_probs=87.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcccc-c---hHHH--HHHHHHHHHHHHHHHHHh-CCC
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHD-S---LLRR--AYYSLGNYIAAQDIKQDL-QKQ 131 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~-~---~~~~--~~~~~~~~~~~~~i~~~l-~~~ 131 (259)
++|+|.|++||||||+++.|++.++..++.. .+.+++...... . +... ...... ......+.... .+.
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 75 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSA----GEIFRELAKERGMSLEEFNKYAEEDPEID-KEIDRRQLEIAEKED 75 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecH----HHHHHHHHHHcCCCHHHHHHHhhcCchHH-HHHHHHHHHHHhcCC
Confidence 4699999999999999999999999877642 111222211110 0 0000 000000 01112222222 444
Q ss_pred cEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHH
Q psy16563 132 PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK 211 (259)
Q Consensus 132 ~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~ 211 (259)
.+|++.... +. ... ..++++|||++|++++.+|+..|++....+.... ...
T Consensus 76 ~~Vi~g~~~-------------~~-------------~~~--~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~-~~~ 126 (180)
T PRK04182 76 NVVLEGRLA-------------GW-------------MAK--DYADLKIWLKAPLEVRAERIAEREGISVEEALEE-TIE 126 (180)
T ss_pred CEEEEEeec-------------ce-------------Eec--CCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHH-HHH
Confidence 555552100 00 001 1268899999999999999999875432222110 001
Q ss_pred HHHHHHHHHHhcC-------CCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 212 FRELLTTIYRNMN-------NPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 212 ~~~~~~~~y~~~~-------~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
........|..+. ....++||+++.+++++++.|.+.+...
T Consensus 127 ~d~~~~~~~~~~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~~~~~ 174 (180)
T PRK04182 127 REESEAKRYKEYYGIDIDDLSIYDLVINTSRWDPEGVFDIILTAIDKL 174 (180)
T ss_pred HHHHHHHHHHHHhCCCccccccccEEEECCCCCHHHHHHHHHHHHHHH
Confidence 1111122233221 1125899999988999999999998764
No 39
>PRK14529 adenylate kinase; Provisional
Probab=99.52 E-value=1e-12 Score=109.12 Aligned_cols=116 Identities=22% Similarity=0.287 Sum_probs=66.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH--HHHHH----HHHHHHHHHHHHHh---CC
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYS----LGNYIAAQDIKQDL---QK 130 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~i~~~l---~~ 130 (259)
.|+|.|++||||||+++.|++.++..+++. +..+++.+.....+.. +.+.. +........+...+ ..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~----gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIES----GAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCccc----chhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCC
Confidence 489999999999999999999999887642 1222222221111100 00000 00011122222222 14
Q ss_pred CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRK 197 (259)
Q Consensus 131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~ 197 (259)
..+|+|.|+.+.... ..+..++ .....||.+|+|++|.+++.+|+..|.
T Consensus 78 ~g~iLDGfPRt~~Qa------------------~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~ 127 (223)
T PRK14529 78 NGWLLDGFPRNKVQA------------------EKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRR 127 (223)
T ss_pred CcEEEeCCCCCHHHH------------------HHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCc
Confidence 668898776653211 1111111 112469999999999999999999883
No 40
>PLN02459 probable adenylate kinase
Probab=99.52 E-value=2.2e-12 Score=108.98 Aligned_cols=169 Identities=15% Similarity=0.186 Sum_probs=97.4
Q ss_pred cCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHH----HHHHH----HHHH
Q psy16563 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYS----LGNYI----AAQD 123 (259)
Q Consensus 54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~----~~~~ 123 (259)
..++.+.|+|.|+|||||||+++.|++.++..+++. ++.+|+.+.....+... .+.. +.-.. +.+.
T Consensus 25 ~~~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~----gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~ 100 (261)
T PLN02459 25 AKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIAT----GDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKR 100 (261)
T ss_pred cccCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeC----cHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHH
Confidence 334445688899999999999999999999887743 33444444332222110 0000 00111 1222
Q ss_pred HHHHh--CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC-C-
Q psy16563 124 IKQDL--QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN-F- 199 (259)
Q Consensus 124 i~~~l--~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~-~- 199 (259)
+.... ....+|+|.|+.+.... ..+.. ...++.+|+|++|.+++++|+..|.- .
T Consensus 101 l~~~~~~~~~g~iLDGFPRt~~Qa------------------~~Le~----~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~ 158 (261)
T PLN02459 101 LEAGEEEGESGFILDGFPRTVRQA------------------EILEG----VTDIDLVVNLKLREEVLVEKCLGRRICSE 158 (261)
T ss_pred HhcccccCCceEEEeCCCCCHHHH------------------HHHHh----cCCCCEEEEEECCHHHHHHHhhccccccc
Confidence 22211 23568888776543111 11111 13479999999999999999998841 0
Q ss_pred -------------------------------------chHHHHHHHHHHHHHHHHHHHHhc--------CC-CCeEEEeC
Q psy16563 200 -------------------------------------TLEENELKKNAKFRELLTTIYRNM--------NN-PELVFVDN 233 (259)
Q Consensus 200 -------------------------------------~~~~~~~e~~~~~~~~~~~~y~~~--------~~-~~~~vID~ 233 (259)
.+.++ ..+..++....|.+. .. ..++.||+
T Consensus 159 ~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~~~~~~~L~~R~DD----~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~ 234 (261)
T PLN02459 159 CGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADD----TEEVVKARLRVYKEESQPVEDFYRKRGKLLEFEL 234 (261)
T ss_pred cCccccccccccccccccccccCCCCCCCcccccccccCCCC----CHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeC
Confidence 01111 122222222233322 11 23788999
Q ss_pred CCCCHhhHHHHHHHHHhccc
Q psy16563 234 SEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 234 s~~~~eev~~~I~~~l~~~~ 253 (259)
+++ +++++++|.+.|..-.
T Consensus 235 ~~~-~~eV~~~i~~~l~~~~ 253 (261)
T PLN02459 235 PGG-IPETWPRLLQALNLDD 253 (261)
T ss_pred CCC-HHHHHHHHHHHhchhh
Confidence 998 9999999999996543
No 41
>PRK08233 hypothetical protein; Provisional
Probab=99.51 E-value=8.4e-13 Score=106.39 Aligned_cols=162 Identities=16% Similarity=0.148 Sum_probs=92.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhccc-ccCCCC----chHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCC---
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASL-KSTPPS----SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK--- 130 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~-~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--- 130 (259)
.+|+|.|++||||||+++.|++.++... +..... ....+..+......+ . ......+.+.+.....+
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~l~~~~~~~~~ 78 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANY-S----EWVLTPLIKDIQELIAKSNV 78 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCCh-h----hhhhHHHHHHHHHHHcCCCc
Confidence 5699999999999999999999997432 111110 011233333332211 0 11112233344444432
Q ss_pred CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchH-HHHHHHH
Q psy16563 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE-ENELKKN 209 (259)
Q Consensus 131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~-~~~~e~~ 209 (259)
..||.|. ... + ....+ ...+|++|||++|++++++|+..|+..+.. +...+..
T Consensus 79 ~~vivd~-~~~---~----------------~~~~~------~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 132 (182)
T PRK08233 79 DYIIVDY-PFA---Y----------------LNSEM------RQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDL 132 (182)
T ss_pred eEEEEee-ehh---h----------------ccHHH------HHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHH
Confidence 3455551 110 0 00011 122689999999999999998877532111 1111224
Q ss_pred HHHHHHHHHHHHhcC----CCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 210 AKFRELLTTIYRNMN----NPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 210 ~~~~~~~~~~y~~~~----~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
..+.......|.++. ...+++||++.+ ++++.++|.+.+...
T Consensus 133 ~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~-~e~i~~~i~~~l~~~ 178 (182)
T PRK08233 133 KHYLNYARPLYLEALHTVKPNADIVLDGALS-VEEIINQIEEELYRR 178 (182)
T ss_pred HHHHHHHHHHHHHHhhcCccCCeEEEcCCCC-HHHHHHHHHHHHHhC
Confidence 456666777777652 124688998876 999999999998754
No 42
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.51 E-value=8.7e-13 Score=105.80 Aligned_cols=160 Identities=18% Similarity=0.262 Sum_probs=88.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCc----hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS----IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVM 135 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~ 135 (259)
.|+|.|++||||||+++.|++.++..++.....- +..+...|...+ . ..|. ....+.+........++.
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~i~~~~~~~g---~-~~fr---~~e~~~l~~l~~~~~~vi 78 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIGWVFDVEG---E-EGFR---DREEKVINELTEKQGIVL 78 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcCHhHHHHHhC---H-HHHH---HHHHHHHHHHHhCCCEEE
Confidence 3999999999999999999999988776442210 001111111110 0 0111 111223333322222333
Q ss_pred cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchH--HHHHHHHHHHH
Q psy16563 136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFR 213 (259)
Q Consensus 136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~--~~~~e~~~~~~ 213 (259)
. .|++. +.-++....+ ...+.+|||++|++++++|+..+...... ....+......
T Consensus 79 ~--------------~ggg~-v~~~~~~~~l-------~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~ 136 (172)
T PRK05057 79 A--------------TGGGS-VKSRETRNRL-------SARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALA 136 (172)
T ss_pred E--------------cCCch-hCCHHHHHHH-------HhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHH
Confidence 2 13332 1111111222 12467999999999999999765421101 00011123344
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 214 ELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 214 ~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
+.....|.+.++ ++||+++.++++++++|.+.+..
T Consensus 137 ~~R~~~Y~~~Ad---~~idt~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 137 NERNPLYEEIAD---VTIRTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred HHHHHHHHhhCC---EEEECCCCCHHHHHHHHHHHHhh
Confidence 555667766654 89999998899999999988754
No 43
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.50 E-value=2.5e-12 Score=102.91 Aligned_cols=159 Identities=14% Similarity=0.193 Sum_probs=87.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHH-hcccc-chHHHHHHHHHHHHHHHHHHHHhCCCcEEEcCC
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREK-FDAHD-SLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRF 138 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~Dr~ 138 (259)
|.|.|++||||||+++.||+.++..++... .+.+. +.... .+....-....+....+.+.....+..||.-
T Consensus 5 i~~~G~~GsGKst~~~~la~~lg~~~~d~D-----~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~~~~~vi~~-- 77 (171)
T PRK03731 5 LFLVGARGCGKTTVGMALAQALGYRFVDTD-----QWLQSTSNMTVAEIVEREGWAGFRARESAALEAVTAPSTVIAT-- 77 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEcc-----HHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhcCCCeEEEC--
Confidence 899999999999999999999998877542 11111 11110 0000000000011111222221123333332
Q ss_pred ccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chH---HHH-HHHHHHHH
Q psy16563 139 WHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLE---ENE-LKKNAKFR 213 (259)
Q Consensus 139 ~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~---~~~-~e~~~~~~ 213 (259)
|+++ .+.+ ....++ ...+++|||++|++++.+|+..|... .+. ... .+...+.+
T Consensus 78 -------------ggg~--vl~~---~~~~~l---~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~ 136 (171)
T PRK03731 78 -------------GGGI--ILTE---ENRHFM---RNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVL 136 (171)
T ss_pred -------------CCCc--cCCH---HHHHHH---HhCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHH
Confidence 2222 1111 111222 12467999999999999999887421 100 000 11234566
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 214 ELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 214 ~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
++....|.+.. .++||++.+ +++++++|.+.+.+
T Consensus 137 ~~r~~~y~~~a---~~~Id~~~~-~e~v~~~i~~~l~~ 170 (171)
T PRK03731 137 AEREALYREVA---HHIIDATQP-PSQVVSEILSALAQ 170 (171)
T ss_pred HHHHHHHHHhC---CEEEcCCCC-HHHHHHHHHHHHhc
Confidence 66677777654 489999976 99999999998864
No 44
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.49 E-value=9.8e-13 Score=115.02 Aligned_cols=196 Identities=15% Similarity=0.223 Sum_probs=105.9
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCch
Q psy16563 15 VSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSI 94 (259)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~ 94 (259)
..+...+++...+....+..+++.+-+.. ....++. .|+|+|++||||||+++.|++.+|..++...
T Consensus 99 ~~l~~~l~~l~~~~~~~~~~~l~~~~~~~-------~~~~~~~--~I~l~G~~GsGKStvg~~La~~Lg~~~id~D---- 165 (309)
T PRK08154 99 LLIRELLEQASPAQLARVRDALSGMLGAG-------RRAARRR--RIALIGLRGAGKSTLGRMLAARLGVPFVELN---- 165 (309)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhhh-------hhccCCC--EEEEECCCCCCHHHHHHHHHHHcCCCEEeHH----
Confidence 34555566644555555666665443221 1234433 4999999999999999999999998877321
Q ss_pred HHHHHHhccccchHHHHHHHH-----HHHHHHHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhc
Q psy16563 95 MSLREKFDAHDSLLRRAYYSL-----GNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168 (259)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~ 168 (259)
..+.+..+.. . ..++.. .+....+.+...+ ....+|+.+ |++. ...+..+..+
T Consensus 166 ~~i~~~~G~~--i--~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~~--------------Ggg~-v~~~~~~~~l-- 224 (309)
T PRK08154 166 REIEREAGLS--V--SEIFALYGQEGYRRLERRALERLIAEHEEMVLAT--------------GGGI-VSEPATFDLL-- 224 (309)
T ss_pred HHHHHHhCCC--H--HHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEEC--------------CCch-hCCHHHHHHH--
Confidence 1111111111 0 011100 0111122333333 223334331 2221 1111112222
Q ss_pred ccccCCCCCEEEEEecCHHHHHHHHhhccCCch---HHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHH
Q psy16563 169 WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL---EENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDI 245 (259)
Q Consensus 169 ~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~---~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I 245 (259)
....++|||++|++++.+|+.+|+...+ .....+......+.....|.. ..++||+++.+++++.++|
T Consensus 225 -----~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~~----ad~~I~t~~~s~ee~~~~I 295 (309)
T PRK08154 225 -----LSHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLYAR----ADAVVDTSGLTVAQSLARL 295 (309)
T ss_pred -----HhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHh----CCEEEECCCCCHHHHHHHH
Confidence 1235699999999999999998863211 111111122233344445532 3478999997799999999
Q ss_pred HHHHhccc
Q psy16563 246 VELIHNLP 253 (259)
Q Consensus 246 ~~~l~~~~ 253 (259)
...+..+.
T Consensus 296 ~~~l~~~~ 303 (309)
T PRK08154 296 RELVRPAL 303 (309)
T ss_pred HHHHHHHh
Confidence 99997654
No 45
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.49 E-value=8.4e-13 Score=112.09 Aligned_cols=162 Identities=23% Similarity=0.234 Sum_probs=96.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEEcCC
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRF 138 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~Dr~ 138 (259)
+|+|+|++||||||+|+.|++++....+..---..+.+++.+..........+ +......++..+ .+..||+|..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~~~e~~~----~~~~~~~i~~~l~~~~~VI~D~~ 76 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKEKYEEFI----RDSTLYLIKTALKNKYSVIVDDT 76 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhHHhHHHH----HHHHHHHHHHHHhCCCeEEEecc
Confidence 48999999999999999999998643211000011334444321000000000 122233455555 5778999964
Q ss_pred ccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHH
Q psy16563 139 WHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT 218 (259)
Q Consensus 139 ~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~ 218 (259)
.... ...+.+.+.++....+.++|||++|.+++++|...|+.... .+.++.+..
T Consensus 77 ~~~~------------------~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~--------~~~i~~l~~ 130 (249)
T TIGR03574 77 NYYN------------------SMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIP--------NEVIKDMYE 130 (249)
T ss_pred chHH------------------HHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCC--------HHHHHHHHH
Confidence 3211 11233444444445578899999999999999999875321 123344444
Q ss_pred HHHhcC-----CCCeEEEeCCCC-CHhhHHHHHHHHHhc
Q psy16563 219 IYRNMN-----NPELVFVDNSEK-SVHESSNDIVELIHN 251 (259)
Q Consensus 219 ~y~~~~-----~~~~~vID~s~~-~~eev~~~I~~~l~~ 251 (259)
.|+... +.+.++||++.. +.+++++.|.+.+..
T Consensus 131 r~e~p~~~~~wd~~~~~vd~~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 131 KFDEPGTKYSWDLPDLTIDTTKKIDYNEILEEILEISEN 169 (249)
T ss_pred hhCCCCCCCCccCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence 454321 236799999863 578999999988754
No 46
>PRK06762 hypothetical protein; Provisional
Probab=99.49 E-value=6e-13 Score=105.97 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=86.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcc--cccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEE
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS--LKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVV 134 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi 134 (259)
+++|+|.|++||||||+|+.|++.++.. ++. .+.++..+........... .....+..+..+ .|..||
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~-----~D~~r~~l~~~~~~~~~~~----~~~~~~~~~~~~~~g~~vi 72 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS-----QDVVRRDMLRVKDGPGNLS----IDLIEQLVRYGLGHCEFVI 72 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEec-----HHHHHHHhccccCCCCCcC----HHHHHHHHHHHHhCCCEEE
Confidence 3569999999999999999999998532 222 2344442221100000000 001111222223 578888
Q ss_pred EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHHHHHHHHHH
Q psy16563 135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENELKKNAKFR 213 (259)
Q Consensus 135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~~e~~~~~~ 213 (259)
+|....... +. ..+.........+..+|||++|++++.+|...|+.. ...+
T Consensus 73 ld~~~~~~~-~~-----------------~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~---------- 124 (166)
T PRK06762 73 LEGILNSDR-YG-----------------PMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGE---------- 124 (166)
T ss_pred EchhhccHh-HH-----------------HHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCH----------
Confidence 986543211 10 011111122233678999999999999999999742 1111
Q ss_pred HHHHHHHHhcC--CCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563 214 ELLTTIYRNMN--NPELVFVDNSEKSVHESSNDIVELIH 250 (259)
Q Consensus 214 ~~~~~~y~~~~--~~~~~vID~s~~~~eev~~~I~~~l~ 250 (259)
+.++..|.... .....+|++++.++++++++|...+.
T Consensus 125 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 163 (166)
T PRK06762 125 DDMRRWWNPHDTLGVIGETIFTDNLSLKDIFDAILTDIG 163 (166)
T ss_pred HHHHHHHhhcCCcCCCCeEEecCCCCHHHHHHHHHHHhc
Confidence 12223332221 11235777777669999999988764
No 47
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.49 E-value=3.8e-12 Score=101.69 Aligned_cols=166 Identities=21% Similarity=0.222 Sum_probs=89.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHH-HHhccccc-hHHHHHHHHHHHHHHHHHHHHhC-CCcEE
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLR-EKFDAHDS-LLRRAYYSLGNYIAAQDIKQDLQ-KQPVV 134 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~-~~~vi 134 (259)
.+.|+|.|++||||||+++.|++.++..++.. +.+. ..++.... +....-....+....+.+..... ...||
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~-----d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi 78 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT-----DHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHNLVI 78 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC-----hHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 34599999999999999999999999877643 1221 12211100 00000000001122223333332 22333
Q ss_pred EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchH--HHHHHHHHHH
Q psy16563 135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKF 212 (259)
Q Consensus 135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~--~~~~e~~~~~ 212 (259)
... ++. .+ ......++. ...++|||++|++++.+|+..|...... +...+....+
T Consensus 79 ~~g---------------~~~--~~---~~~~r~~l~---~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ 135 (175)
T PRK00131 79 STG---------------GGA--VL---REENRALLR---ERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDL 135 (175)
T ss_pred EeC---------------CCE--ee---cHHHHHHHH---hCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHH
Confidence 321 110 00 011111221 2357999999999999999887631111 1111112223
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563 213 RELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPM 254 (259)
Q Consensus 213 ~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~~ 254 (259)
.+.....|.+.+ .++||+++.+++++++.|.+.+..++.
T Consensus 136 ~~~~~~~~~~~~---dl~idt~~~~~~e~~~~I~~~v~~~~~ 174 (175)
T PRK00131 136 YEERDPLYEEVA---DITVETDGRSPEEVVNEILEKLEAAWR 174 (175)
T ss_pred HHHHHHHHHhhc---CeEEeCCCCCHHHHHHHHHHHHHhhcc
Confidence 333333344433 389999998899999999999987653
No 48
>PRK14526 adenylate kinase; Provisional
Probab=99.48 E-value=4.8e-12 Score=104.58 Aligned_cols=162 Identities=19% Similarity=0.247 Sum_probs=89.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH--HHHHHHH--------HHHHHHHHHHHhC
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYSLG--------NYIAAQDIKQDLQ 129 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~--------~~~~~~~i~~~l~ 129 (259)
.|+|.|++||||||+++.|++.++..+++. ++.+++.+........ ..++... ...+.+.+.+...
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~----G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~ 77 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIST----GDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKN 77 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeec----ChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccc
Confidence 388999999999999999999998776642 2233332222111100 0000000 1122223322222
Q ss_pred CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC-C---------
Q psy16563 130 KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN-F--------- 199 (259)
Q Consensus 130 ~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~-~--------- 199 (259)
...+|+|.|+-+... ...+..+ .....+|+|++|++++.+|+..|.- .
T Consensus 78 ~~g~ilDGfPR~~~Q------------------a~~l~~~----~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~ 135 (211)
T PRK14526 78 NDNFILDGFPRNINQ------------------AKALDKF----LPNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIY 135 (211)
T ss_pred cCcEEEECCCCCHHH------------------HHHHHHh----cCCCEEEEEECCHHHHHHHHHCCCcccccCCccccc
Confidence 456778877654211 1111111 1123578899999999999998841 0
Q ss_pred ------------------chHHHHHHHHHHHHHHHHHHHHhc--------CC-CCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 200 ------------------TLEENELKKNAKFRELLTTIYRNM--------NN-PELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 200 ------------------~~~~~~~e~~~~~~~~~~~~y~~~--------~~-~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
.+.++ ..+-.++....|.+. .. ..++.||++++ ++++.++|.+.|.+.
T Consensus 136 ~~pp~~~~~~~~~~~~l~~R~DD----~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~-~~~V~~~i~~~l~~~ 210 (211)
T PRK14526 136 TLPTKEKGICDVCKGDLYQRKDD----KEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKD-IDEVKKKLIEIISKK 210 (211)
T ss_pred cCCCCccCcCCCCCCeeeccCCC----CHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCC-HHHHHHHHHHHHccc
Confidence 01111 112222222233322 11 23789999998 999999999998753
No 49
>PRK00625 shikimate kinase; Provisional
Probab=99.48 E-value=2.7e-12 Score=102.79 Aligned_cols=162 Identities=15% Similarity=0.093 Sum_probs=88.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHH-----HHHHHHHHHhCCCcEE
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNY-----IAAQDIKQDLQKQPVV 134 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~l~~~~vi 134 (259)
.|+|.|++||||||+++.||+.++..++.... .+.+............+|..... .....+.....+..||
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~----~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~~~~VI 77 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD----LIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPVIPSIV 77 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH----HHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhccCCeEE
Confidence 49999999999999999999999988775421 11211111000000111111111 1112233222334455
Q ss_pred EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q psy16563 135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214 (259)
Q Consensus 135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~ 214 (259)
.. |+|. ..-++.+..+ .....+|||++|++++.+|+..|+....... .+...+.++
T Consensus 78 s~---------------GGg~-~~~~e~~~~l-------~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~-~~~~~~ll~ 133 (173)
T PRK00625 78 AL---------------GGGT-LMIEPSYAHI-------RNRGLLVLLSLPIATIYQRLQKRGLPERLKH-APSLEEILS 133 (173)
T ss_pred EC---------------CCCc-cCCHHHHHHH-------hcCCEEEEEECCHHHHHHHHhcCCCCcccCc-HHHHHHHHH
Confidence 33 3333 1111112211 2235799999999999999999864321111 122345567
Q ss_pred HHHHHHHhcCCCC---eEEEeCCCCCHhhHHHHHHHHH
Q psy16563 215 LLTTIYRNMNNPE---LVFVDNSEKSVHESSNDIVELI 249 (259)
Q Consensus 215 ~~~~~y~~~~~~~---~~vID~s~~~~eev~~~I~~~l 249 (259)
+....|++.++.- ..++++++.++-++.+.+...|
T Consensus 134 ~R~~~Y~~~ad~~i~~~~~~~~~~~~~~~~~~~~~~~~ 171 (173)
T PRK00625 134 QRIDRMRSIADYIFSLDHVAETSSESLMRACQSFCTLL 171 (173)
T ss_pred HHHHHHHHHCCEEEeCCCcccCCCCCHHHHHHHHHHHh
Confidence 7777887765311 1346667766777777777665
No 50
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.47 E-value=3.1e-12 Score=102.85 Aligned_cols=160 Identities=14% Similarity=0.047 Sum_probs=85.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCch-HHHHHHhcc-------cc---chHHHHHHHHHHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSI-MSLREKFDA-------HD---SLLRRAYYSLGNYIAAQDIKQD 127 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~-~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~i~~~ 127 (259)
++|+|.|++||||||+++.|++.++..++......+ ..+...+.. ++ .... ..+..........+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~ 81 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPG-PEFRLLEGAWYEAVAAM 81 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccc-hHHHHHHHHHHHHHHHH
Confidence 359999999999999999999998765443211111 011000000 00 0000 01000001122223334
Q ss_pred h-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHH
Q psy16563 128 L-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL 206 (259)
Q Consensus 128 l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~ 206 (259)
+ .|..||+|-...... .....+.. . ...+-..|||+||.+++.+|+.+|++... .
T Consensus 82 l~~G~~VIvD~~~~~~~-----------------~~r~~~~~-~--~~~~~~~v~l~~~~~~l~~R~~~R~~~~~--~-- 137 (175)
T cd00227 82 ARAGANVIADDVFLGRA-----------------ALQDCWRS-F--VGLDVLWVGVRCPGEVAEGRETARGDRVP--G-- 137 (175)
T ss_pred HhCCCcEEEeeeccCCH-----------------HHHHHHHH-h--cCCCEEEEEEECCHHHHHHHHHhcCCccc--h--
Confidence 4 688999984322100 00011111 1 12345789999999999999999985321 0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563 207 KKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249 (259)
Q Consensus 207 e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l 249 (259)
......+.+... ...+++||+++.++++++++|.+.|
T Consensus 138 -----~~~~~~~~~~~~-~~~dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 138 -----QARKQARVVHAG-VEYDLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred -----HHHHHHHHhcCC-CcceEEEECCCCCHHHHHHHHHHhc
Confidence 111111222221 2237899999988999999988765
No 51
>PRK13948 shikimate kinase; Provisional
Probab=99.47 E-value=1.3e-12 Score=105.46 Aligned_cols=159 Identities=18% Similarity=0.213 Sum_probs=90.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCc----hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEE
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS----IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVV 134 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi 134 (259)
.|+|.|++||||||+++.|++.++..++.....- +..+.+.|...++ ..| +....+.+..++ .+..||
T Consensus 12 ~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si~~if~~~Ge----~~f---R~~E~~~l~~l~~~~~~VI 84 (182)
T PRK13948 12 WVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGE----AYF---RRCEAEVVRRLTRLDYAVI 84 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCHHHHHHHhCH----HHH---HHHHHHHHHHHHhcCCeEE
Confidence 4999999999999999999999998887543100 0111222222111 011 112223334433 233344
Q ss_pred EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchH-HHHHHHHHHHH
Q psy16563 135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE-ENELKKNAKFR 213 (259)
Q Consensus 135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~-~~~~e~~~~~~ 213 (259)
.- |+|. ..-++....+.+ -..+|||++|++++.+|+..++++--. ....+.....+
T Consensus 85 a~---------------GgG~-v~~~~n~~~l~~-------~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~ 141 (182)
T PRK13948 85 SL---------------GGGT-FMHEENRRKLLS-------RGPVVVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLL 141 (182)
T ss_pred EC---------------CCcE-EcCHHHHHHHHc-------CCeEEEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHHH
Confidence 32 3332 111222233321 245899999999999999544321100 01111123344
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 214 ELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 214 ~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
++....|.. ..++||+++.++++++++|.+.+...
T Consensus 142 ~~R~~~Y~~----a~~~i~t~~~~~~ei~~~i~~~l~~~ 176 (182)
T PRK13948 142 NEREPVYRQ----ATIHVSTDGRRSEEVVEEIVEKLWAW 176 (182)
T ss_pred HHHHHHHHh----CCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 555556633 34889999888999999999998764
No 52
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.46 E-value=3.4e-12 Score=101.32 Aligned_cols=155 Identities=14% Similarity=0.193 Sum_probs=82.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchH-HHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEEcCC
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM-SLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRF 138 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~Dr~ 138 (259)
|+|.|++||||||+++.|++.++..++....-... ..+...... .+....... ......+.+...+ .+..+|.+-.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~l~~~~~~Vi~~t 78 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGI-PLNDDDRWP-WLQNLNDASTAAAAKNKVGIITCS 78 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCC-CCChhhHHH-HHHHHHHHHHHHHhcCCCEEEEec
Confidence 57899999999999999999998766643221101 111111111 110000000 0011122222222 4555555522
Q ss_pred ccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHH
Q psy16563 139 WHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT 218 (259)
Q Consensus 139 ~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~ 218 (259)
.... . ....+ .....+-.+|||++|++++.+|+..|++..... +.+..
T Consensus 79 ~~~~-~-----------------~r~~~----~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~----------~~i~~ 126 (163)
T TIGR01313 79 ALKR-H-----------------YRDIL----REAEPNLHFIYLSGDKDVILERMKARKGHFMKA----------DMLES 126 (163)
T ss_pred ccHH-H-----------------HHHHH----HhcCCCEEEEEEeCCHHHHHHHHHhccCCCCCH----------HHHHH
Confidence 1110 0 01111 112223347999999999999999997421111 11222
Q ss_pred HHHhc----C-CCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563 219 IYRNM----N-NPELVFVDNSEKSVHESSNDIVELIH 250 (259)
Q Consensus 219 ~y~~~----~-~~~~~vID~s~~~~eev~~~I~~~l~ 250 (259)
.|..+ . .+.+++||++++ ++++.+++.+.|-
T Consensus 127 ~~~~~~~~~~~e~~~~~id~~~~-~~~~~~~~~~~~~ 162 (163)
T TIGR01313 127 QFAALEEPLADETDVLRVDIDQP-LEGVEEDCIAVVL 162 (163)
T ss_pred HHHHhCCCCCCCCceEEEECCCC-HHHHHHHHHHHHh
Confidence 22222 2 235899999999 9999999988763
No 53
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.46 E-value=7.3e-12 Score=102.37 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=46.1
Q ss_pred CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM--NNPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~--~~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
+|.+|+++||++++.+|+.+|++.+.++. .+++....... .....++|||+++ ++++..++.++++.
T Consensus 125 ~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~--------~~ri~~Q~~~~~~~~~ad~vI~N~g~-~e~l~~qv~~i~~~ 193 (194)
T PRK00081 125 VDRVLVVDAPPETQLERLMARDGLSEEEA--------EAIIASQMPREEKLARADDVIDNNGD-LEELRKQVERLLQE 193 (194)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCHHHH--------HHHHHHhCCHHHHHHhCCEEEECCCC-HHHHHHHHHHHHHh
Confidence 68999999999999999999976543321 12221111000 0123589999987 99999999988764
No 54
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.46 E-value=6.6e-12 Score=102.66 Aligned_cols=66 Identities=21% Similarity=0.252 Sum_probs=45.3
Q ss_pred CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHH--hcCCCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYR--NMNNPELVFVDNSEKSVHESSNDIVELIH 250 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~--~~~~~~~~vID~s~~~~eev~~~I~~~l~ 250 (259)
.|.+|+++||++++.+|+..|++.+..+. .+++..... .......++|+|+++ +++..+++.+++.
T Consensus 126 ~D~ii~V~a~~e~r~~Rl~~R~g~s~e~~--------~~ri~~Q~~~~~k~~~aD~vI~N~g~-~e~l~~qv~~~l~ 193 (195)
T PRK14730 126 CSEIWVVDCSPEQQLQRLIKRDGLTEEEA--------EARINAQWPLEEKVKLADVVLDNSGD-LEKLYQQVDQLLK 193 (195)
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCCHHHH--------HHHHHhCCCHHHHHhhCCEEEECCCC-HHHHHHHHHHHHh
Confidence 58899999999999999999976554332 122221110 011224588999997 9999999987763
No 55
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.45 E-value=2.3e-12 Score=104.67 Aligned_cols=72 Identities=24% Similarity=0.248 Sum_probs=49.6
Q ss_pred CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccccc
Q psy16563 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPMF 255 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~~~ 255 (259)
+-.+|||++|++++.+|+..|++...++ ..+++.. +......++++||++++ +++++++|.+++..-..+
T Consensus 111 ~~~vi~l~~s~e~l~~RL~~R~~~~~~~--------i~~rl~r-~~~~~~ad~~vi~~~~s-~ee~~~~i~~~l~~~~~~ 180 (186)
T PRK10078 111 ALLPVCLQVSPEILRQRLENRGRENASE--------INARLAR-AARYQPQDCHTLNNDGS-LRQSVDTLLTLLHLSQKE 180 (186)
T ss_pred CEEEEEEeCCHHHHHHHHHHhCCCCHHH--------HHHHHHH-hhhhccCCEEEEeCCCC-HHHHHHHHHHHHhhcCcc
Confidence 4568999999999999999887543221 1122211 11111234688997776 999999999999888776
Q ss_pred cc
Q psy16563 256 KH 257 (259)
Q Consensus 256 ~~ 257 (259)
+|
T Consensus 181 ~~ 182 (186)
T PRK10078 181 KH 182 (186)
T ss_pred cc
Confidence 66
No 56
>PRK04040 adenylate kinase; Provisional
Probab=99.44 E-value=4.8e-12 Score=102.86 Aligned_cols=170 Identities=18% Similarity=0.270 Sum_probs=86.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh--hcccccCCCCchHHHHHHhcccc------c---hHHHHHHHHHHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKL--KASLKSTPPSSIMSLREKFDAHD------S---LLRRAYYSLGNYIAAQDIKQD 127 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~--~~~~~~~p~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~i~~~ 127 (259)
++|+|+|++||||||+++.|++.+ +..++.. ++.+++.....+ + +........+ ......+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~----g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~-~~a~~~i~~~ 77 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNF----GDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQ-REAAERIAEM 77 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEEec----chHHHHHHHHcCCCCCHHHHhhCChhhhHHHH-HHHHHHHHHh
Confidence 469999999999999999999999 4544432 112222111111 0 0000000111 1223334443
Q ss_pred hCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhh---ccCCchHHH
Q psy16563 128 LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSR---RKNFTLEEN 204 (259)
Q Consensus 128 l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~---R~~~~~~~~ 204 (259)
..+..||+|.+..-. + ..|+-..+| .|......||.+|+|.+||++..+|... |++......
T Consensus 78 ~~~~~~~~~~h~~i~------~--~~g~~~~~~-------~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e 142 (188)
T PRK04040 78 AGEGPVIVDTHATIK------T--PAGYLPGLP-------EWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDVETEE 142 (188)
T ss_pred hcCCCEEEeeeeeec------c--CCCCcCCCC-------HHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHH
Confidence 345668888653210 0 111101111 1111234699999999999999999874 433221122
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC-eEEEeCCCCCHhhHHHHHHHHH
Q psy16563 205 ELKKNAKFRELLTTIYRNMNNPE-LVFVDNSEKSVHESSNDIVELI 249 (259)
Q Consensus 205 ~~e~~~~~~~~~~~~y~~~~~~~-~~vID~s~~~~eev~~~I~~~l 249 (259)
..+......+.....|......+ .+++|.++. +++.++++.++|
T Consensus 143 ~I~~~~~~a~~~a~~~a~~~g~~~~iI~N~d~~-~e~a~~~i~~ii 187 (188)
T PRK04040 143 DIEEHQEMNRAAAMAYAVLTGATVKIVENREGL-LEEAAEEIVEVL 187 (188)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHh
Confidence 11111111112122233333334 455566666 999999998876
No 57
>PLN02842 nucleotide kinase
Probab=99.44 E-value=3.9e-12 Score=116.21 Aligned_cols=161 Identities=16% Similarity=0.211 Sum_probs=94.1
Q ss_pred EEcCCCCcHHHHHHHHHHHhhcccccC--------CCCc--hHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-HhCCC
Q psy16563 63 FEGLDGCGKSHTSQTVAKKLKASLKST--------PPSS--IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQ-DLQKQ 131 (259)
Q Consensus 63 ~~g~~g~gkst~~~~l~~~~~~~~~~~--------p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~l~~~ 131 (259)
|+|++||||||+++.|+++++..++.. +..+ +..+++.+....-.....+. ..+.+.+.. .....
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~----~ll~drl~~~~~~~~ 77 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVI----AMVTGRLSREDAKEK 77 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHH----HHHHHHHhCccccCC
Confidence 789999999999999999999877642 1111 23444444332111111111 122233322 11233
Q ss_pred cEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC-C-----------
Q psy16563 132 PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN-F----------- 199 (259)
Q Consensus 132 ~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~-~----------- 199 (259)
.+|+|+|+.+.... ..+.. ....||++|+|++|++++++|+.+|.- .
T Consensus 78 G~ILDGfPRt~~Qa------------------~~Le~---~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~ 136 (505)
T PLN02842 78 GWLLDGYPRSFAQA------------------QSLEK---LKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNF 136 (505)
T ss_pred cEEEeCCCCcHHHH------------------HHHHh---cCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccC
Confidence 46779887653211 11111 135599999999999999999988741 0
Q ss_pred ------------chHHHHHHHHHHHHHHHHHHHHhcC------CC-CeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 200 ------------TLEENELKKNAKFRELLTTIYRNMN------NP-ELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 200 ------------~~~~~~~e~~~~~~~~~~~~y~~~~------~~-~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
.+.++ ..+-.++....|.+.. .+ .+..||++.+ +++++++|.+.|.+..
T Consensus 137 pP~~~~~~~rL~~R~DD----~eE~IkkRL~~Y~~~t~pIl~~Y~~rl~~IDAsqs-~EeVfeeI~~iL~~~L 204 (505)
T PLN02842 137 PPESEEIKARLITRPDD----TEEKVKARLQIYKKNAEAILSTYSDIMVKIDGNRP-KEVVFEEISSLLSQIQ 204 (505)
T ss_pred CCCccccccccccCCCC----CHHHHHHHHHHHHHHhhhHHHhcCcEEEEEECCCC-HHHHHHHHHHHHHHHH
Confidence 01111 1222233333344331 12 3788999998 9999999999997653
No 58
>KOG4235|consensus
Probab=99.44 E-value=2.2e-12 Score=102.40 Aligned_cols=165 Identities=19% Similarity=0.223 Sum_probs=103.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccc--ccCCCCch-----H--HHHHHhccccchHHHHHHHHHHHHHHHHHHHHh---
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASL--KSTPPSSI-----M--SLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL--- 128 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~--~~~p~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l--- 128 (259)
..|+|.+|+||||..+.+........ +.+|...+ . .+.++++++| .++-|.++.|.....+...+
T Consensus 25 ~~iEGNIa~GKsTfl~~~~~~t~~~~ev~tEPV~kW~nV~~~~~n~L~~mY~ep---~Rws~tfQtYv~ltrL~~~~~p~ 101 (244)
T KOG4235|consen 25 SIIEGNIAVGKSTFLNFFLNKTYEEWEVLTEPVAKWQNVQGANANLLDMMYREP---ARWSYTFQTYVFLTRLKVQLEPF 101 (244)
T ss_pred EEEecccccchHHHHHHHHhccCccceecCchHHHHhccccccccHHHHHhhch---HhheehhhHHHHHHHHHHHhcCC
Confidence 34999999999999998877665443 56664311 1 2455556554 23445566666555555433
Q ss_pred CC--CcEEEcCCccchhhhhhhhh-hccccCCCCCcchhhhhc-c---c--ccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563 129 QK--QPVVMDRFWHSTSAYGMANE-LVKNSDLKLPDEDDDIYS-W---P--KDLMKPDLVIYLTVSEAIRLQRLSRRKNF 199 (259)
Q Consensus 129 ~~--~~vi~Dr~~~s~~~~~~~~~-~~~~~~~~l~~~~~~l~~-~---~--~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~ 199 (259)
.+ .+-+++|.++|.. |+++.+ ...| .+++....+++ | . .....+|.+|||.++|++|.+|+..|++.
T Consensus 102 ~~~kpvrimERSv~SdR-yiFv~nl~esg---~m~e~e~~iy~eW~d~i~~~~~v~~dgiIYLrasPetc~~Ri~~R~R~ 177 (244)
T KOG4235|consen 102 NGRKPVRIMERSVYSDR-YIFVENLYESG---SMNEVEYVIYQEWFDWILRSMDVSLDGIIYLRASPETCYKRIYLRARE 177 (244)
T ss_pred CCCCCeehhhhhhhhhH-HHHHHHHHhcC---CcccchhhhHHHHHHHHHhccccccceEEEeecChHHHHHHHHHHhhh
Confidence 23 4568888888753 222222 2221 23455444443 3 2 12357999999999999999999999754
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEeCCCC
Q psy16563 200 TLEENELKKNAKFRELLTTIYRNM---------NNPELVFVDNSEK 236 (259)
Q Consensus 200 ~~~~~~~e~~~~~~~~~~~~y~~~---------~~~~~~vID~s~~ 236 (259)
+.. . ..++|++.++..++.| .+.+++++|++..
T Consensus 178 EE~-g---ipL~YLe~LH~~HE~WLi~~~f~~lq~vpvLVLDad~n 219 (244)
T KOG4235|consen 178 EEK-G---IPLKYLEALHELHESWLIKLHFPNLQAVPVLVLDADHN 219 (244)
T ss_pred hhc-C---CcHHHHHHHHHHHHHHHHHHhhhHhhcCCeEEEecccc
Confidence 221 1 1466888888777776 2457899997754
No 59
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.44 E-value=1.3e-11 Score=98.43 Aligned_cols=157 Identities=18% Similarity=0.251 Sum_probs=85.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcccc-chHHHHHHHHH----HHHHHHHHHHHh-CCCc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHD-SLLRRAYYSLG----NYIAAQDIKQDL-QKQP 132 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~i~~~l-~~~~ 132 (259)
++|+|.|++||||||+++.|++.++..++... ..+++.....+ .......+... .......+.... .+..
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAG----DIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKN 76 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHH----HHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCC
Confidence 46999999999999999999999998766421 11222211110 00000000000 011222233333 4445
Q ss_pred EEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHH
Q psy16563 133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKF 212 (259)
Q Consensus 133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~ 212 (259)
+|++.... .|.. ...+|++|||++|++++.+|+..|++.+..+.... ....
T Consensus 77 ~Vi~g~~~---------------------------~~~~-~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~-~~~~ 127 (171)
T TIGR02173 77 VVLESRLA---------------------------GWIV-REYADVKIWLKAPLEVRARRIAKREGKSLTVARSE-TIER 127 (171)
T ss_pred EEEEeccc---------------------------ceee-cCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHH-HHHH
Confidence 56662110 0000 12367899999999999999999976543332111 1111
Q ss_pred HHHHHHHHHhc-----CCC-C-eEEEeCCCCCHhhHHHHHHHHH
Q psy16563 213 RELLTTIYRNM-----NNP-E-LVFVDNSEKSVHESSNDIVELI 249 (259)
Q Consensus 213 ~~~~~~~y~~~-----~~~-~-~~vID~s~~~~eev~~~I~~~l 249 (259)
-......|... .++ . .++||++.-++++ ++.|.+.+
T Consensus 128 d~~~~~~~~~~~~~~~~~~~~ydl~i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 128 EESEKRRYLKFYGIDIDDLSIYDLVINTSNWDPNN-VDIILDAL 170 (171)
T ss_pred HHHHHHHHHHHhCCCccccccccEEEECCCCCHHH-HHHHHHHh
Confidence 11112223222 122 2 4999999988999 98888765
No 60
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.43 E-value=6.1e-12 Score=102.45 Aligned_cols=115 Identities=26% Similarity=0.379 Sum_probs=66.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHH----HHHHHHHHHHHHHh----CC
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYS----LGNYIAAQDIKQDL----QK 130 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~i~~~l----~~ 130 (259)
|+|.|++||||||+++.|++.++..++... +.+++.......+... .++. .........+.+.+ .+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~----~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~ 77 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTG----DLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCK 77 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECc----HHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence 899999999999999999999998776431 1122222111111000 0000 00112223333333 24
Q ss_pred CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197 (259)
Q Consensus 131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~ 197 (259)
..+|+|.|+.+... ...+.........|+++|+|++|++++.+|+.+|+
T Consensus 78 ~~~vldg~Pr~~~q------------------~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 126 (194)
T cd01428 78 KGFILDGFPRTVDQ------------------AEALDELLDEGIKPDKVIELDVPDEVLIERILGRR 126 (194)
T ss_pred CCEEEeCCCCCHHH------------------HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 67888877653211 11111111112358999999999999999999986
No 61
>PRK13946 shikimate kinase; Provisional
Probab=99.43 E-value=1.5e-11 Score=99.63 Aligned_cols=160 Identities=15% Similarity=0.192 Sum_probs=89.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHH-----HHHHHHHHHHHh-CCCcE
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG-----NYIAAQDIKQDL-QKQPV 133 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~l-~~~~v 133 (259)
.|+|+|++||||||+++.||+.+|..++.... .+.+..... +. .++... +....+.+..++ .+..|
T Consensus 12 ~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~----~~~~~~g~~--~~--e~~~~~ge~~~~~~e~~~l~~l~~~~~~V 83 (184)
T PRK13946 12 TVVLVGLMGAGKSTVGRRLATMLGLPFLDADT----EIERAARMT--IA--EIFAAYGEPEFRDLERRVIARLLKGGPLV 83 (184)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeECcCH----HHHHHhCCC--HH--HHHHHHCHHHHHHHHHHHHHHHHhcCCeE
Confidence 49999999999999999999999998876531 111111111 00 011100 112233444444 34556
Q ss_pred EEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCch--HHHHHHHHHH
Q psy16563 134 VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL--EENELKKNAK 211 (259)
Q Consensus 134 i~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~--~~~~~e~~~~ 211 (259)
|..+. +. ...++....+.. -.++|||++|++++.+|+..|..... .....+....
T Consensus 84 i~~gg---------------g~-~~~~~~r~~l~~-------~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~ 140 (184)
T PRK13946 84 LATGG---------------GA-FMNEETRAAIAE-------KGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLAR 140 (184)
T ss_pred EECCC---------------CC-cCCHHHHHHHHc-------CCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHH
Confidence 66531 11 111111222211 24689999999999999998864210 0110111122
Q ss_pred HHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563 212 FRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPM 254 (259)
Q Consensus 212 ~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~~ 254 (259)
..+.....|.. ..++||++..+++++++.|.+.+..+..
T Consensus 141 ~~~~R~~~y~~----~dl~i~~~~~~~~~~~~~i~~~i~~~~~ 179 (184)
T PRK13946 141 LMEERYPVYAE----ADLTVASRDVPKEVMADEVIEALAAYLE 179 (184)
T ss_pred HHHHHHHHHHh----CCEEEECCCCCHHHHHHHHHHHHHHhhc
Confidence 22333334432 2377888887799999999999987643
No 62
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.42 E-value=1.7e-11 Score=99.46 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=27.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
++|+|.||.||||||+++.||++||..++.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yld 34 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLD 34 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeec
Confidence 679999999999999999999999988664
No 63
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.42 E-value=8.8e-12 Score=102.20 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=49.4
Q ss_pred CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
.|.+|+++||++++.+|+++|++.++++.. ...-.|.-.+...+.+ .++|||++.++++...++.+++..+
T Consensus 129 ~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a~---~ri~~Q~~~eek~~~a---D~VI~N~g~~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 129 LKKVIVIKADLETRIRRLMERDGKNRQQAV---AFINLQISDKEREKIA---DFVIDNTELTDQELESKLITTINEI 199 (204)
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCCHHHHH---HHHHhCCCHHHHHHhC---CEEEECcCCCHHHHHHHHHHHHHHH
Confidence 588999999999999999999876544321 1111122222333333 4999999933999999999888765
No 64
>PRK13947 shikimate kinase; Provisional
Probab=99.42 E-value=1.4e-11 Score=98.49 Aligned_cols=157 Identities=19% Similarity=0.264 Sum_probs=83.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccccCCCC----chHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhC-CCcEEE
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS----SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQ-KQPVVM 135 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~~vi~ 135 (259)
|+|.|++||||||+++.||+.++..++..+.. .+..+.+.|....+ ..+. ......+..+.. +..||.
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~ge---~~~~----~~e~~~~~~l~~~~~~vi~ 76 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGE---VRFR----SEEKLLVKKLARLKNLVIA 76 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCcHHHHHHHhCh---HHHH----HHHHHHHHHHhhcCCeEEE
Confidence 99999999999999999999999988764321 00111122221111 0111 111122333332 334442
Q ss_pred cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCch--HHHHHHHHHHHH
Q psy16563 136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL--EENELKKNAKFR 213 (259)
Q Consensus 136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~--~~~~~e~~~~~~ 213 (259)
. |++.... ++....+. ..+++|||++|++++.+|+..|+.... .....+...+..
T Consensus 77 ~---------------g~g~vl~-~~~~~~l~-------~~~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~ 133 (171)
T PRK13947 77 T---------------GGGVVLN-PENVVQLR-------KNGVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELL 133 (171)
T ss_pred C---------------CCCCcCC-HHHHHHHH-------hCCEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHH
Confidence 2 1111000 11112221 124699999999999999987753210 011011112222
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHH-HHhc
Q psy16563 214 ELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVE-LIHN 251 (259)
Q Consensus 214 ~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~-~l~~ 251 (259)
+.....|.. ..++||+++.+++++++.|.+ .+..
T Consensus 134 ~~r~~~y~~----ad~~Idt~~~~~~~i~~~I~~~~~~~ 168 (171)
T PRK13947 134 KEREPFYDF----ADYTIDTGDMTIDEVAEEIIKAYLKL 168 (171)
T ss_pred HHHHHHHHh----cCEEEECCCCCHHHHHHHHHHHHHhh
Confidence 333333421 248899988789999999998 5543
No 65
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.42 E-value=1.3e-12 Score=105.10 Aligned_cols=161 Identities=17% Similarity=0.188 Sum_probs=84.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccch-HHHHHHHHHHHHHHHHHHHHh--CCCcEEE
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSL-LRRAYYSLGNYIAAQDIKQDL--QKQPVVM 135 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l--~~~~vi~ 135 (259)
.+|+|+|++||||||+++.|++++........--..+.+++.+.....- ......+ .....+...+ .|..||+
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~g~~VI~ 83 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQSRIEMA----LKRAKLAKFLADQGMIVIV 83 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCCCHHHHHHHH----HHHHHHHHHHHhCCCEEEE
Confidence 3599999999999999999999997432111001234566655432211 0111101 1111122222 5778888
Q ss_pred cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Q psy16563 136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL 215 (259)
Q Consensus 136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~ 215 (259)
|.... + ..+....+....+..+|||++|++++.+|+..+. ... ...+........
T Consensus 84 ~~~~~----~------------------~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l-~~~--~~~~~~~~~~~~ 138 (176)
T PRK05541 84 TTISM----F------------------DEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGL-YTK--ALKGEIKNVVGV 138 (176)
T ss_pred EeCCc----H------------------HHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhH-HHH--HHcCcccccccC
Confidence 73211 0 0111111112335679999999999999975320 000 000001111111
Q ss_pred HHHHHHhcCCCCeEEEeCCC-CCHhhHHHHHHHHHhc
Q psy16563 216 LTTIYRNMNNPELVFVDNSE-KSVHESSNDIVELIHN 251 (259)
Q Consensus 216 ~~~~y~~~~~~~~~vID~s~-~~~eev~~~I~~~l~~ 251 (259)
....|.+ ...++||+++ .++++++++|.+.+..
T Consensus 139 ~~~~~~~---~Ad~vI~~~~~~~~~~~v~~i~~~l~~ 172 (176)
T PRK05541 139 DIPFDEP---KADLVIDNSCRTSLDEKVDLILNKLKL 172 (176)
T ss_pred CCcccCC---CCCEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1222221 1368999986 4699999999888754
No 66
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.41 E-value=1e-11 Score=101.59 Aligned_cols=70 Identities=14% Similarity=0.031 Sum_probs=46.7
Q ss_pred CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
.|.+||++||++++.+|+..|++.+.++.. .....+.....+.. ...++|+|+++ ++++..++.++++.+
T Consensus 122 ~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~---~ri~~Q~~~~~k~~---~aD~vI~N~~~-~~~l~~~v~~l~~~~ 191 (196)
T PRK14732 122 CDATVTVDSDPEESILRTISRDGMKKEDVL---ARIASQLPITEKLK---RADYIVRNDGN-REGLKEECKILYSTL 191 (196)
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCCHHHHH---HHHHHcCCHHHHHH---hCCEEEECCCC-HHHHHHHHHHHHHHH
Confidence 589999999999999999999866543321 11111111111222 23488899887 999999998887653
No 67
>PRK01184 hypothetical protein; Provisional
Probab=99.41 E-value=1.8e-11 Score=99.11 Aligned_cols=162 Identities=15% Similarity=0.169 Sum_probs=85.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccc--c----chHHHH--HHHH-HHHHHHHHHHHHh-
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAH--D----SLLRRA--YYSL-GNYIAAQDIKQDL- 128 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~--~----~~~~~~--~~~~-~~~~~~~~i~~~l- 128 (259)
++|+|+|++||||||+++ +++.+|..++.. .+.+++.+... + .+.... .... ........+.+.+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~----~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 76 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVM----GDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIR 76 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEh----hHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 469999999999999987 677788776643 23444443211 0 010000 0000 0011112222222
Q ss_pred --CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHH
Q psy16563 129 --QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL 206 (259)
Q Consensus 129 --~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~ 206 (259)
.+..||.|.+. .. .....+...+ ..+..+|+|+||++++.+|+..|+..+....
T Consensus 77 ~~~~~~vvidg~r-~~------------------~e~~~~~~~~---~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~-- 132 (184)
T PRK01184 77 EKGDEVVVIDGVR-GD------------------AEVEYFRKEF---PEDFILIAIHAPPEVRFERLKKRGRSDDPKS-- 132 (184)
T ss_pred hcCCCcEEEeCCC-CH------------------HHHHHHHHhC---CcccEEEEEECCHHHHHHHHHHcCCCCChhh--
Confidence 25677887541 10 0111111111 2356799999999999999999874321111
Q ss_pred HHHHHHHHHHHHH----HHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 207 KKNAKFRELLTTI----YRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 207 e~~~~~~~~~~~~----y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
...+..+.... ..+......++||++++ ++++.+++.+++..+
T Consensus 133 --~~~~~~r~~~q~~~~~~~~~~~ad~vI~N~~~-~~~l~~~v~~~~~~~ 179 (184)
T PRK01184 133 --WEELEERDERELSWGIGEVIALADYMIVNDST-LEEFRARVRKLLERI 179 (184)
T ss_pred --HHHHHHHHHHHhccCHHHHHHhcCEEEeCCCC-HHHHHHHHHHHHHHH
Confidence 01111222111 00111223488888776 999999999988754
No 68
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.40 E-value=9.3e-12 Score=116.51 Aligned_cols=165 Identities=17% Similarity=0.267 Sum_probs=98.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCC----chHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhC-CCc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS----SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQ-KQP 132 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~~ 132 (259)
.+.|+|.|.+||||||+++.||+.++.+++..... .+..+.+.|.+.++ ..| +....+.++..+. ...
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si~eif~~~Ge---~~F----R~~E~~~l~~~~~~~~~ 78 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEYGE---PAF----REVEADVVADMLEDFDG 78 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCHHHHHHHHHH---HHH----HHHHHHHHHHHHhcCCe
Confidence 44599999999999999999999999998865321 01122233322211 111 1222233444332 333
Q ss_pred EEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchH-HHHHHHHHH
Q psy16563 133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE-ENELKKNAK 211 (259)
Q Consensus 133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~-~~~~e~~~~ 211 (259)
||. .|+|. +.-++....+..|.+.. ..+|||++|++++.+|+..+....-. ....+...+
T Consensus 79 VIs---------------~GGG~-v~~~~n~~~L~~~~~~~---g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~ 139 (542)
T PRK14021 79 IFS---------------LGGGA-PMTPSTQHALASYIAHG---GRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKK 139 (542)
T ss_pred EEE---------------CCCch-hCCHHHHHHHHHHHhcC---CEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHH
Confidence 442 15554 22233344443343322 36999999999999999754311000 011122345
Q ss_pred HHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 212 FRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 212 ~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
.+++....|++.++ ++||+++.++++++++|.+.+..
T Consensus 140 l~~~R~~~Y~~~Ad---~~i~~~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 140 LFKQRDPVFRQVAN---VHVHTRGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred HHHHHHHHHHhhCC---EEEECCCCCHHHHHHHHHHHHHh
Confidence 55666777876654 89999998899999999998865
No 69
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.38 E-value=2.4e-11 Score=102.24 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=46.1
Q ss_pred CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCC--CCCHhhHHHHHHHHHhcc
Q psy16563 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS--EKSVHESSNDIVELIHNL 252 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s--~~~~eev~~~I~~~l~~~ 252 (259)
.|.+|+++||++++.+|+.+|++.+..+.. .+...+...+.+. ....++|+|+ ++ +++..+++.+++..+
T Consensus 137 ~D~iv~V~a~~e~ri~RL~~R~g~s~eea~---~Ri~~Q~~~~ek~---~~aD~VI~N~~~g~-~~~L~~~v~~~~~~~ 208 (244)
T PTZ00451 137 VSASVVVSCSEERQIERLRKRNGFSKEEAL---QRIGSQMPLEEKR---RLADYIIENDSADD-LDELRGSVCDCVAWM 208 (244)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCHHHHH---HHHHhCCCHHHHH---HhCCEEEECCCCCC-HHHHHHHHHHHHHHH
Confidence 589999999999999999999765543321 1111111111111 2234788888 76 999999999877553
No 70
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=4.6e-12 Score=96.51 Aligned_cols=150 Identities=18% Similarity=0.294 Sum_probs=86.6
Q ss_pred EcCCCCcHHHHHHHHHHHhhccccc----CCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEEcCC
Q psy16563 64 EGLDGCGKSHTSQTVAKKLKASLKS----TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRF 138 (259)
Q Consensus 64 ~g~~g~gkst~~~~l~~~~~~~~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~Dr~ 138 (259)
.|.+||||||++..||+.++..++. +|+.++.++..-..-+.. .++-+.. .+...+.... ++..+|.-
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~Dd--DR~pWL~---~l~~~~~~~~~~~~~~vi~-- 73 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDD--DRWPWLE---ALGDAAASLAQKNKHVVIA-- 73 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcc--hhhHHHH---HHHHHHHHhhcCCCceEEe--
Confidence 4899999999999999999998874 343344443321110100 1111111 1111222222 23323321
Q ss_pred ccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCC-EEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHH
Q psy16563 139 WHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPD-LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217 (259)
Q Consensus 139 ~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pd-lvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~ 217 (259)
||.+.. ...+.++. ..|+ .+|||+.+.+++.+|+..|.+.-.... .+.
T Consensus 74 -CSALKr-------------------~YRD~LR~-~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~----------ll~ 122 (161)
T COG3265 74 -CSALKR-------------------SYRDLLRE-ANPGLRFVYLDGDFDLILERMKARKGHFMPAS----------LLD 122 (161)
T ss_pred -cHHHHH-------------------HHHHHHhc-cCCCeEEEEecCCHHHHHHHHHhcccCCCCHH----------HHH
Confidence 222111 11111111 1133 489999999999999999987754433 233
Q ss_pred HHHHhcC----CCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 218 TIYRNMN----NPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 218 ~~y~~~~----~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
..|..+. ++.+++||.+.+ ++++++++.++|...
T Consensus 123 SQfa~LE~P~~de~vi~idi~~~-~e~vv~~~~~~l~~~ 160 (161)
T COG3265 123 SQFATLEEPGADEDVLTIDIDQP-PEEVVAQALAWLKEG 160 (161)
T ss_pred HHHHHhcCCCCCCCEEEeeCCCC-HHHHHHHHHHHHhcc
Confidence 4444443 345899999998 999999999998753
No 71
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.37 E-value=1.4e-11 Score=99.00 Aligned_cols=161 Identities=25% Similarity=0.323 Sum_probs=92.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHH----HHHHHH----HHHHHHHhC
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYS----LGNYIA----AQDIKQDLQ 129 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~----~~~i~~~l~ 129 (259)
.|+|.|+|||||||+|+.|+++++..+++. +..++.......++... .+.. +..+.. ...+...-.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlst----gd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~ 77 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDT----GDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADC 77 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcH----hHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcc
Confidence 489999999999999999999999888753 22223222222111110 0000 001112 222222211
Q ss_pred CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccccc-CCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563 130 KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKD-LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK 208 (259)
Q Consensus 130 ~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~ 208 (259)
...+|+|.|+-....+. .+...+.. ...+|.++.++++.++...|+..|.. +.++
T Consensus 78 ~~~~I~dg~PR~~~qa~------------------~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~--r~dd---- 133 (178)
T COG0563 78 KAGFILDGFPRTLCQAR------------------ALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV--REDD---- 133 (178)
T ss_pred cCeEEEeCCCCcHHHHH------------------HHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc--cccC----
Confidence 12799998876543222 11111111 24689999999999999999999852 1111
Q ss_pred HHHHHHHHHHHHHhcCCC--Ce--EEEeCCCCCHhhHHHHHHHHH
Q psy16563 209 NAKFRELLTTIYRNMNNP--EL--VFVDNSEKSVHESSNDIVELI 249 (259)
Q Consensus 209 ~~~~~~~~~~~y~~~~~~--~~--~vID~s~~~~eev~~~I~~~l 249 (259)
..+...+....|.+...| .+ +.||+.++ ++++.+++.+.+
T Consensus 134 ~~~~~~~R~~~y~~~~~pli~~y~~~id~~~~-i~~v~~~i~~~l 177 (178)
T COG0563 134 NEETVKKRLKVYHEQTAPLIEYYSVTIDGSGE-IEEVLADILKAL 177 (178)
T ss_pred CHHHHHHHHHHHHhcccchhhhheeeccCCCC-HHHHHHHHHHhh
Confidence 112233344445544322 12 56899998 999999998765
No 72
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.37 E-value=2.5e-11 Score=97.75 Aligned_cols=147 Identities=24% Similarity=0.261 Sum_probs=77.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhccccc---------CCCCc-hHHHHHHhccc-----cchHH----HHHHHH--HH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS---------TPPSS-IMSLREKFDAH-----DSLLR----RAYYSL--GN 117 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~---------~p~~~-~~~~~~~~~~~-----~~~~~----~~~~~~--~~ 117 (259)
++|+|+|..||||||+++.|++ +|..++. .|+.. ...+.+.|+.+ +.+.+ ...|.. .+
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 4699999999999999999999 8877542 34443 35666666542 22222 112211 12
Q ss_pred HHHHHHHHHH--------h----CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecC
Q psy16563 118 YIAAQDIKQD--------L----QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVS 185 (259)
Q Consensus 118 ~~~~~~i~~~--------l----~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~ 185 (259)
..+.+.++|. + ....++.|- |-.++. .|. ...|.+|+++||
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~----------------------pLL~E~--~~~---~~~D~vi~V~a~ 132 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVEI----------------------PLLFES--GLE---KLCDEVIVVYAP 132 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-----------------------TTTTTT--TGG---GGSSEEEEEE--
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCEEEEEc----------------------chhhhh--hHh---hhhceEEEEECC
Confidence 2233333332 1 124555551 000111 011 125889999999
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhh
Q psy16563 186 EAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHE 240 (259)
Q Consensus 186 ~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~ee 240 (259)
++++.+|+.+|++.+.++.. ...-.|.-.+...+.+ .++|||+++ +++
T Consensus 133 ~e~ri~Rl~~R~~~~~~~~~---~ri~~Q~~~~~k~~~a---d~vI~N~g~-~~~ 180 (180)
T PF01121_consen 133 EEIRIKRLMERDGLSEEEAE---ARIASQMPDEEKRKRA---DFVIDNNGS-LEE 180 (180)
T ss_dssp HHHHHHHHHHHHTSTHHHHH---HHHHTS--HHHHHHH----SEEEE-SSH-HH-
T ss_pred HHHHHHHHHhhCCCcHHHHH---HHHHhCCCHHHHHHhC---CEEEECCCC-CCC
Confidence 99999999999876654332 1111122222222223 499999987 653
No 73
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.37 E-value=3.7e-11 Score=98.63 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=46.9
Q ss_pred CCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 175 KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 175 ~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
.+|.+||++||++++.+|+..|++.+.++.. .....-....... ....++||++++ ++++.+++..+++.+
T Consensus 125 ~~D~vi~V~a~~e~ri~Rl~~R~g~s~e~~~-----~ri~~Q~~~~~k~-~~ad~vI~N~g~-~e~l~~~v~~~~~~~ 195 (200)
T PRK14734 125 KMDLVVVVDVDVEERVRRLVEKRGLDEDDAR-----RRIAAQIPDDVRL-KAADIVVDNNGT-REQLLAQVDGLIAEI 195 (200)
T ss_pred cCCeEEEEECCHHHHHHHHHHcCCCCHHHHH-----HHHHhcCCHHHHH-HhCCEEEECcCC-HHHHHHHHHHHHHHH
Confidence 4699999999999999999998655433321 1111100111111 123488999998 999999999888654
No 74
>PRK06217 hypothetical protein; Validated
Probab=99.36 E-value=7.9e-12 Score=101.23 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=86.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH-hCCCcEEEcCC
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQD-LQKQPVVMDRF 138 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-l~~~~vi~Dr~ 138 (259)
.|+|.|++||||||+++.|++.++..++..... ... .....+..... .......+... ..+..+|+|.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~-----~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~vi~G~ 72 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDY-----FWL-PTDPPFTTKRP----PEERLRLLLEDLRPREGWVLSGS 72 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCce-----eec-cCCCCccccCC----HHHHHHHHHHHHhcCCCEEEEcc
Confidence 499999999999999999999999876643210 000 00000000000 01111222222 24556777744
Q ss_pred ccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC--ch---HHHHH-HHHHHH
Q psy16563 139 WHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF--TL---EENEL-KKNAKF 212 (259)
Q Consensus 139 ~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~--~~---~~~~~-e~~~~~ 212 (259)
+... ...+ ...+|.+|||++|++++.+|+.+|... .+ ..... +...++
T Consensus 73 ~~~~--------------------~~~~------~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~~~~~~~~~~~e~~~~~~ 126 (183)
T PRK06217 73 ALGW--------------------GDPL------EPLFDLVVFLTIPPELRLERLRLREFQRYGNRILPGGDMHKASLEF 126 (183)
T ss_pred HHHH--------------------HHHH------HhhCCEEEEEECCHHHHHHHHHcCcccccCcccCCCCCHHHHHHHH
Confidence 3211 0011 133788999999999999999988521 11 00000 011222
Q ss_pred HHHH------------HHHHHhcC---CCCeEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563 213 RELL------------TTIYRNMN---NPELVFVDNSEKSVHESSNDIVELIHNLPM 254 (259)
Q Consensus 213 ~~~~------------~~~y~~~~---~~~~~vID~s~~~~eev~~~I~~~l~~~~~ 254 (259)
.+.. ...+..+. ..+++++++..+ +++..++|.+.|+..+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~-~~~~~~~i~~~~~~~~~ 182 (183)
T PRK06217 127 LEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLT-VEDLLDEVLDHLASAPG 182 (183)
T ss_pred HHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCC-HHHHHHHHHHHHhcccc
Confidence 2221 11222221 235677777766 99999999999977653
No 75
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.36 E-value=5.4e-11 Score=97.27 Aligned_cols=71 Identities=24% Similarity=0.271 Sum_probs=49.1
Q ss_pred CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
.|.+|.++||++++++|+++|++.+.+... .....++-. .+++ ....+++|+++. ++...+++.+.+..+.
T Consensus 124 ~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~~---~~~~~Q~~~--~ek~-~~ad~vi~n~~~-i~~l~~~i~~~~~~~~ 194 (201)
T COG0237 124 FDKVIVVYAPPEIRLERLMKRDGLDEEDAE---ARLASQRDL--EEKL-ALADVVIDNDGS-IENLLEQIEKLLKELL 194 (201)
T ss_pred CCEEEEEECCHHHHHHHHHhcCCCCHHHHH---HHHHhcCCH--HHHH-hhcCChhhcCCC-HHHHHHHHHHHHHHHH
Confidence 678999999999999999999965543322 111212111 1112 223488999998 8999999999887764
No 76
>PLN02199 shikimate kinase
Probab=99.35 E-value=3.2e-11 Score=103.09 Aligned_cols=158 Identities=16% Similarity=0.136 Sum_probs=89.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccccCCCC-----chHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhC-CCcEE
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS-----SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQ-KQPVV 134 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~~vi 134 (259)
|+|.|.+||||||+++.||+.++..++..+.. .+..+.++|...++ ..| +....+.+..+.. ...||
T Consensus 105 I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE---~~F----R~~E~e~L~~L~~~~~~VI 177 (303)
T PLN02199 105 MYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGE---NFF----RGKETDALKKLSSRYQVVV 177 (303)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCH---HHH----HHHHHHHHHHHHhcCCEEE
Confidence 99999999999999999999999988754210 00111112221110 011 1122333444443 33344
Q ss_pred EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchH------HHH---
Q psy16563 135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE------ENE--- 205 (259)
Q Consensus 135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~------~~~--- 205 (259)
.- |+|. +.-++....+. -..+|||++|++++.+|+.+.+...++ ...
T Consensus 178 St---------------GGG~-V~~~~n~~~L~--------~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~ 233 (303)
T PLN02199 178 ST---------------GGGA-VIRPINWKYMH--------KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSV 233 (303)
T ss_pred EC---------------CCcc-cCCHHHHHHHh--------CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhh
Confidence 21 5554 22122222221 246999999999999999852211110 000
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCCeEEEe------------CCCCCHhhHHHHHHHHHhccc
Q psy16563 206 -LKKNAKFRELLTTIYRNMNNPELVFVD------------NSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 206 -~e~~~~~~~~~~~~y~~~~~~~~~vID------------~s~~~~eev~~~I~~~l~~~~ 253 (259)
.+.....++.....|.+ + .++|| +++.++++++.+|.+.+..+.
T Consensus 234 ~~~~L~~L~~~R~plY~~-A---d~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l 290 (303)
T PLN02199 234 AFKRLSAIWDERGEAYTN-A---NARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFL 290 (303)
T ss_pred HHHHHHHHHHHHHHHHHh-C---CEEEecccccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 11223445555666655 3 37788 777789999999999997764
No 77
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.35 E-value=2.3e-11 Score=96.21 Aligned_cols=150 Identities=18% Similarity=0.244 Sum_probs=83.2
Q ss_pred CCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHH-----HHHHHHHHHHHhCC-CcEEEcCCcc
Q psy16563 67 DGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG-----NYIAAQDIKQDLQK-QPVVMDRFWH 140 (259)
Q Consensus 67 ~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~l~~-~~vi~Dr~~~ 140 (259)
+||||||+++.||+.|+.+++... ..+.+.++ .....++... +....+.+...+.. ..||.=
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D----~~i~~~~g----~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~---- 68 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLD----DEIEERTG----MSISEIFAEEGEEAFRELESEALRELLKENNCVIAC---- 68 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHH----HHHHHHHT----SHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE----
T ss_pred CCCcHHHHHHHHHHHhCCCccccC----HHHHHHhC----CcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeC----
Confidence 699999999999999999987531 11222222 1111222222 12233344555543 333331
Q ss_pred chhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchH--HHHHHHHHHHHHHHHH
Q psy16563 141 STSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFRELLTT 218 (259)
Q Consensus 141 s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~--~~~~e~~~~~~~~~~~ 218 (259)
|+|. ..-++....+. ....+|||++|++++.+|+..++..... ....+.....+.+...
T Consensus 69 -----------GGG~-~~~~~~~~~L~-------~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~ 129 (158)
T PF01202_consen 69 -----------GGGI-VLKEENRELLK-------ENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREP 129 (158)
T ss_dssp ------------TTG-GGSHHHHHHHH-------HHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHH
T ss_pred -----------CCCC-cCcHHHHHHHH-------hCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHH
Confidence 3333 11122222222 2346999999999999999887651000 0110112223335667
Q ss_pred HHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563 219 IYRNMNNPELVFVDNSEKSVHESSNDIVELIH 250 (259)
Q Consensus 219 ~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~ 250 (259)
.|.+.+. ++||++..++++++++|.+.|+
T Consensus 130 ~Y~~~a~---~~v~~~~~~~~~i~~~i~~~l~ 158 (158)
T PF01202_consen 130 LYEQAAD---IVVDTDGSPPEEIAEEILEFLK 158 (158)
T ss_dssp HHHHHSS---EEEETSSCHHHHHHHHHHHHH-
T ss_pred HHHhcCe---EEEeCCCCCHHHHHHHHHHHhC
Confidence 7877654 8999999866999999998874
No 78
>PLN02422 dephospho-CoA kinase
Probab=99.34 E-value=9.4e-11 Score=97.82 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=47.6
Q ss_pred CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHH--hcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYR--NMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~--~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
.|.+|+++||++++.+|+.+|++.+.++.. .++..... .......++|+|+++ +++...++.++++.+
T Consensus 126 ~D~vI~V~a~~e~ri~RL~~R~g~s~eea~--------~Ri~~Q~~~eek~~~AD~VI~N~gs-~e~L~~qv~~ll~~l 195 (232)
T PLN02422 126 TKPVVVVWVDPETQLERLMARDGLSEEQAR--------NRINAQMPLDWKRSKADIVIDNSGS-LEDLKQQFQKVLEKI 195 (232)
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCCHHHHH--------HHHHHcCChhHHHhhCCEEEECCCC-HHHHHHHHHHHHHHH
Confidence 589999999999999999999865543321 11111111 111234589999997 999999999888765
No 79
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.34 E-value=9.9e-11 Score=97.90 Aligned_cols=109 Identities=19% Similarity=0.232 Sum_probs=66.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccch--------------HHHHHHHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSL--------------LRRAYYSLGNYIAAQDI 124 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~i 124 (259)
+.|+|.|++||||||+|+.|++.++..+++. ++.+++.......+ ...... ....+.+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~----gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~----~lv~~~l 78 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINM----GNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVI----AIVKDEI 78 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEEC----ChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHH----HHHHHHH
Confidence 3499999999999999999999999887754 22333333221111 111110 1222233
Q ss_pred HHHh--CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563 125 KQDL--QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197 (259)
Q Consensus 125 ~~~l--~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~ 197 (259)
.... ....+++|.|+.+... ...+.. ...|+++|+|++|.+++++|+..|.
T Consensus 79 ~~~~~~~~~g~iLDGfPRt~~Q------------------a~~l~~----~~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 79 AKVTDDCFKGFILDGFPRNLKQ------------------CKELGK----ITNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred HhhccccCceEEEecCCCCHHH------------------HHHHHh----cCCCCEEEEEeCCHHHHHHHHHcCc
Confidence 3321 2466888877654211 111211 1358999999999999999999884
No 80
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.33 E-value=1e-10 Score=96.65 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=46.8
Q ss_pred CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM--NNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~--~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
+|.+|+++||++++.+|+.+|++.+.++. .+++...+... .....++|+|+++ ++++.+++.++++.+
T Consensus 134 ~d~ii~V~a~~e~~~~Rl~~R~~~s~e~~--------~~Ri~~q~~~~~~~~~ad~vI~N~g~-~e~l~~~i~~~~~~~ 203 (208)
T PRK14731 134 LDFIVVVAADTELRLERAVQRGMGSREEI--------RRRIAAQWPQEKLIERADYVIYNNGT-LDELKAQTEQLYQVL 203 (208)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCHHHH--------HHHHHHcCChHHHHHhCCEEEECCCC-HHHHHHHHHHHHHHH
Confidence 68999999999999999999986543321 11221111110 0113488899987 999999999888764
No 81
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.33 E-value=3e-11 Score=99.82 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=46.2
Q ss_pred CCCEEEEEecCHHHHHHHHhhcc----CCchHHHHHHHHHHHHHHHHHHHHhcC----CCCeEEEeCCCC---CHhhHHH
Q psy16563 175 KPDLVIYLTVSEAIRLQRLSRRK----NFTLEENELKKNAKFRELLTTIYRNMN----NPELVFVDNSEK---SVHESSN 243 (259)
Q Consensus 175 ~pdlvI~L~a~~ev~~~Rl~~R~----~~~~~~~~~e~~~~~~~~~~~~y~~~~----~~~~~vID~s~~---~~eev~~ 243 (259)
..|++|||++|++++++|+..|+ +.+.++. ...+.......|.++- ....++|++++. +++++.+
T Consensus 125 ~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~----~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~ 200 (209)
T PRK05480 125 LMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESV----INQYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKA 200 (209)
T ss_pred hhceeEEEeCChhHHHHHHHhhcchhcCCCHHHH----HHHHHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHH
Confidence 36899999999999999998886 2332221 1223344444554442 234688886652 3777777
Q ss_pred HHHHHHh
Q psy16563 244 DIVELIH 250 (259)
Q Consensus 244 ~I~~~l~ 250 (259)
+|..++.
T Consensus 201 ~i~~~~~ 207 (209)
T PRK05480 201 KIRQLLE 207 (209)
T ss_pred HHHHHhh
Confidence 7776654
No 82
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.32 E-value=2.7e-11 Score=111.51 Aligned_cols=75 Identities=20% Similarity=0.227 Sum_probs=46.6
Q ss_pred CCCEEEEEecCHHHHHHHHhhc----cCCchHHHHHHHH-HHHHHHH-HHHHH---hcCC-CCeEEEeCCCCCHhhHHHH
Q psy16563 175 KPDLVIYLTVSEAIRLQRLSRR----KNFTLEENELKKN-AKFRELL-TTIYR---NMNN-PELVFVDNSEKSVHESSND 244 (259)
Q Consensus 175 ~pdlvI~L~a~~ev~~~Rl~~R----~~~~~~~~~~e~~-~~~~~~~-~~~y~---~~~~-~~~~vID~s~~~~eev~~~ 244 (259)
..|+.|||+||++++.+|...+ +-.... .+.. ..+.+|- .+..+ +++. ...++||+++.+++++++.
T Consensus 420 ~AdlKIfL~As~evRa~RR~~~l~~Rpll~~~---~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~lsieeVv~~ 496 (512)
T PRK13477 420 DAELKIFLTASVEERARRRALDLQAQGFPVID---LEQLEAQIAERDRLDSTREIAPLRKADDAIELITDGLSIEEVVDK 496 (512)
T ss_pred CCCEEEEEECCHHHHHHHHHhhhhhCCCccCC---HHHHHHHHHHHHhhhcccccccccccCCeEEEECCCCCHHHHHHH
Confidence 3579999999999999996544 321110 1111 1122221 11111 1222 2469999999889999999
Q ss_pred HHHHHhcc
Q psy16563 245 IVELIHNL 252 (259)
Q Consensus 245 I~~~l~~~ 252 (259)
|.+.+...
T Consensus 497 Il~~i~~~ 504 (512)
T PRK13477 497 IIDLYRDR 504 (512)
T ss_pred HHHHHHHh
Confidence 99999763
No 83
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.31 E-value=2.9e-11 Score=97.44 Aligned_cols=67 Identities=21% Similarity=0.303 Sum_probs=43.9
Q ss_pred CEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 177 DLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 177 dlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
..+|||++|++++.+|+..|++.+... . ...+.+ ...|.. ....+++|+++.+ ++++.++|.+++.+
T Consensus 112 ~~~i~l~~~~~~~~~Rl~~R~~~~~~~--~---~~rl~~-~~~~~~-~~~~~~vi~~~~~-~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 112 LLVVNITASPDVLAQRLAARGRESREE--I---EERLAR-SARFAA-APADVTTIDNSGS-LEVAGETLLRLLRK 178 (179)
T ss_pred cEEEEEECCHHHHHHHHHHcCCCCHHH--H---HHHHHH-Hhhccc-ccCCEEEEeCCCC-HHHHHHHHHHHHcc
Confidence 468999999999999999997644221 1 111111 111211 2234666888876 99999999998853
No 84
>PRK08356 hypothetical protein; Provisional
Probab=99.30 E-value=1.7e-10 Score=94.41 Aligned_cols=75 Identities=23% Similarity=0.343 Sum_probs=43.6
Q ss_pred CEEEEEecCHHHHHHHHhhccCCchHHH-HHHHHHHHHHHHHHHHHhc--CCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 177 DLVIYLTVSEAIRLQRLSRRKNFTLEEN-ELKKNAKFRELLTTIYRNM--NNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 177 dlvI~L~a~~ev~~~Rl~~R~~~~~~~~-~~e~~~~~~~~~~~~y~~~--~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
..+|||++|++++.+|+.+|+..++... ..+............|... .....++|+++++ ++++.++|.+++..+
T Consensus 116 ~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~aD~vI~N~~~-~e~~~~~i~~~~~~~ 193 (195)
T PRK08356 116 GKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEKLYHTTKLKDKADFVIVNEGT-LEELRKKVEEILREL 193 (195)
T ss_pred CEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHhhhhhhHHHhCcEEEECCCC-HHHHHHHHHHHHHHh
Confidence 4699999999999999999985432110 1111111111111112111 1123366666665 999999999988754
No 85
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.30 E-value=1.3e-10 Score=91.07 Aligned_cols=145 Identities=21% Similarity=0.311 Sum_probs=76.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHH-----HHHHHHHHHHHhC-CCcEE
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG-----NYIAAQDIKQDLQ-KQPVV 134 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~l~-~~~vi 134 (259)
|+|.|++||||||+++.|++.++..++... .+.......+ . . .++... +....+.+..... +..||
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d-----~~~~~~~~~~-~-~-~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi 73 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD-----ELIEQRAGMS-I-P-EIFAEEGEEGFRELEREVLLLLLTKENAVI 73 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch-----HHHHHHcCCC-H-H-HHHHHHCHHHHHHHHHHHHHHHhccCCcEE
Confidence 899999999999999999999998776432 2222211111 1 0 111100 0111122333333 34444
Q ss_pred EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHH-HHHHHHHHH
Q psy16563 135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEEN-ELKKNAKFR 213 (259)
Q Consensus 135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~-~~e~~~~~~ 213 (259)
... ++. . ..... ..+ .....++|||++|++++.+|+.+|+....... ..+.....+
T Consensus 74 ~~g---------------~~~-i--~~~~~--~~~---~~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~ 130 (154)
T cd00464 74 ATG---------------GGA-V--LREEN--RRL---LLENGIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELL 130 (154)
T ss_pred ECC---------------CCc-c--CcHHH--HHH---HHcCCeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHH
Confidence 331 111 0 00000 111 12246799999999999999998852111100 001134445
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCHh
Q psy16563 214 ELLTTIYRNMNNPELVFVDNSEKSVH 239 (259)
Q Consensus 214 ~~~~~~y~~~~~~~~~vID~s~~~~e 239 (259)
++....|.++++ ++||+++.+++
T Consensus 131 ~~r~~~Y~~~ad---~~i~~~~~~~~ 153 (154)
T cd00464 131 EEREPLYREVAD---LTIDTDELSPE 153 (154)
T ss_pred HHHHHHHHHhCc---EEEECCCCCCC
Confidence 555666766544 99999987665
No 86
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.29 E-value=2.9e-11 Score=99.76 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=50.4
Q ss_pred CCEEEEEecC--HHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563 176 PDLVIYLTVS--EAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN---NPELVFVDNSEKSVHESSNDIVELIH 250 (259)
Q Consensus 176 pdlvI~L~a~--~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~---~~~~~vID~s~~~~eev~~~I~~~l~ 250 (259)
||+++++.+| .+++.+|+..|++.+. .++.+++...|.++. ...+++||++.+ ++++.++|.+.|.
T Consensus 123 pd~~~if~~pps~e~l~~Rl~~R~~~~~--------~~~~~Rl~~~~~e~~~~~~~~~~iId~~~~-~e~v~~~i~~~l~ 193 (206)
T PRK14738 123 PEAVFIFLAPPSMDELTRRLELRRTESP--------EELERRLATAPLELEQLPEFDYVVVNPEDR-LDEAVAQIMAIIS 193 (206)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHcCCCCH--------HHHHHHHHHHHHHHhcccCCCEEEECCCCC-HHHHHHHHHHHHH
Confidence 7877776665 5688999999975431 236677777776653 235788999887 9999999999997
Q ss_pred cc
Q psy16563 251 NL 252 (259)
Q Consensus 251 ~~ 252 (259)
..
T Consensus 194 ~~ 195 (206)
T PRK14738 194 AE 195 (206)
T ss_pred HH
Confidence 64
No 87
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.26 E-value=2.1e-10 Score=88.98 Aligned_cols=103 Identities=20% Similarity=0.234 Sum_probs=59.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEEcCCc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFW 139 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~Dr~~ 139 (259)
+|+|.|++||||||+++.|++.++..++.........+........... .. .....+.+.....+..+|+|...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~~~~~~~~~~-----~i-~~~l~~~~~~~~~~~~~Vidg~~ 74 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVAAIP-----EV-RKALDERQRELAKKPGIVLEGRD 74 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHHHHHHhcccH-----hH-HHHHHHHHHHHhhCCCEEEEeee
Confidence 4899999999999999999999998877553211111111111000000 00 11122223333344556676321
Q ss_pred cchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhc
Q psy16563 140 HSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRR 196 (259)
Q Consensus 140 ~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R 196 (259)
.. |.. ....|++|||++|++++.+|+..|
T Consensus 75 ~~---------------------------~~~-~~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 75 IG---------------------------TVV-FPDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred ee---------------------------eEE-cCCCCEEEEEECCHHHHHHHHHHH
Confidence 10 000 123578999999999999999883
No 88
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.26 E-value=2.4e-10 Score=94.89 Aligned_cols=29 Identities=34% Similarity=0.517 Sum_probs=26.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
++|+|.||+||||||+++.|++.++..++
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~ 31 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYL 31 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 56999999999999999999999997654
No 89
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.26 E-value=4.1e-10 Score=90.58 Aligned_cols=71 Identities=8% Similarity=0.129 Sum_probs=49.8
Q ss_pred CCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 174 MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN--NPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 174 ~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~--~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
..|..+|||++|++++.+|+.+|.+... ..+.++.....++... ..+++.||++.+ ++++.+++.+.+..
T Consensus 97 ~~~~~~v~l~a~~~~l~~Rl~~R~~~~~-------~~~vl~~Q~~~~e~~~~~e~~~~~~d~~~~-~~~~~~~~~~~~~~ 168 (176)
T PRK09825 97 SPNVHFLWLDGDYETILARMQRRAGHFM-------PPDLLQSQFDALERPCADEHDIARIDVNHD-IENVTEQCRQAVQA 168 (176)
T ss_pred CCCEEEEEEeCCHHHHHHHHhcccCCCC-------CHHHHHHHHHHcCCCCCCcCCeEEEECCCC-HHHHHHHHHHHHHH
Confidence 3466799999999999999999975321 1223333333333332 235899999998 88899998888866
Q ss_pred c
Q psy16563 252 L 252 (259)
Q Consensus 252 ~ 252 (259)
.
T Consensus 169 ~ 169 (176)
T PRK09825 169 F 169 (176)
T ss_pred H
Confidence 4
No 90
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.25 E-value=3e-10 Score=92.36 Aligned_cols=64 Identities=27% Similarity=0.281 Sum_probs=40.7
Q ss_pred CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHH
Q psy16563 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIV 246 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~ 246 (259)
.|.+|++++|++++.+|+..|++.+..+.. . ....-...+... ....++|+++++ +++..+++.
T Consensus 124 ~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~---~--r~~~q~~~~~~~-~~ad~vI~N~~~-~e~l~~~~~ 187 (188)
T TIGR00152 124 CDRVIVVDVSPQLQLERLMQRDNLTEEEVQ---K--RLASQMDIEERL-ARADDVIDNSAT-LADLVKQLE 187 (188)
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCCHHHHH---H--HHHhcCCHHHHH-HhCCEEEECCCC-HHHHHHHHh
Confidence 688999999999999999999865433221 0 111101111111 123588899887 898888764
No 91
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.25 E-value=2.1e-10 Score=89.87 Aligned_cols=111 Identities=22% Similarity=0.315 Sum_probs=62.3
Q ss_pred EEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHH--HHH----HHHHHHHHHHHHH----hCCCc
Q psy16563 63 FEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRA--YYS----LGNYIAAQDIKQD----LQKQP 132 (259)
Q Consensus 63 ~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~i~~~----l~~~~ 132 (259)
|.|||||||||+|+.|++.++..+++. .+-+++.+..+..+.... ... +......+.+... .....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~----~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g 76 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISV----GDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRG 76 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEH----HHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceech----HHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccce
Confidence 689999999999999999999887742 233344333222111100 000 0011222222222 23577
Q ss_pred EEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhh
Q psy16563 133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSR 195 (259)
Q Consensus 133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~ 195 (259)
+|+|.|+.+..... .+..+. .....|+.+|+|+||.+++.+|+..
T Consensus 77 ~ildGfPrt~~Qa~------------------~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 77 FILDGFPRTLEQAE------------------ALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp EEEESB-SSHHHHH------------------HHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred eeeeeccccHHHHH------------------HHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 89998876532111 111111 1345689999999999999999987
No 92
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.24 E-value=2.7e-10 Score=91.95 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=24.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
+|+|+|++||||||+++.|++ +|..++.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~ 28 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVID 28 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEe
Confidence 489999999999999999999 7876543
No 93
>KOG3220|consensus
Probab=99.24 E-value=4e-10 Score=90.15 Aligned_cols=158 Identities=19% Similarity=0.234 Sum_probs=92.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhccccc---------CCCCc-hHHHHHHhccc-----cch----HHHHHHHH--HH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS---------TPPSS-IMSLREKFDAH-----DSL----LRRAYYSL--GN 117 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~---------~p~~~-~~~~~~~~~~~-----~~~----~~~~~~~~--~~ 117 (259)
.+|+++|.+||||||+++.+. .+|...+. +|+.+ ...+.+.|+++ +.+ +.+.+|.. .+
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 369999999999999999998 67877543 56644 47777777664 111 11222221 12
Q ss_pred HHHHHH-------------HHHHhCCC-cEEEcCCccchhhhhhhhhhccccCCCCCcchhh-hhcccccCCCCCEEEEE
Q psy16563 118 YIAAQD-------------IKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDD-IYSWPKDLMKPDLVIYL 182 (259)
Q Consensus 118 ~~~~~~-------------i~~~l~~~-~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~pdlvI~L 182 (259)
+.+... ....+.|. .+|+| .|-.++. +..| ...+|.+
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD----------------------iPLLFE~~~~~~------~~~tvvV 132 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLD----------------------IPLLFEAKLLKI------CHKTVVV 132 (225)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe----------------------chHHHHHhHHhh------eeeEEEE
Confidence 222222 22233554 45555 1222222 1122 2448999
Q ss_pred ecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 183 TVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 183 ~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
.||.+++.+|+.+|++.++++.+ ++...+..-+.-. ....++|||+++ +++..+++...+...
T Consensus 133 ~cd~~~Ql~Rl~~Rd~lse~dAe---~Rl~sQmp~~~k~---~~a~~Vi~Nng~-~~~l~~qv~~v~~~~ 195 (225)
T KOG3220|consen 133 TCDEELQLERLVERDELSEEDAE---NRLQSQMPLEKKC---ELADVVIDNNGS-LEDLYEQVEKVLALL 195 (225)
T ss_pred EECcHHHHHHHHHhccccHHHHH---HHHHhcCCHHHHH---HhhheeecCCCC-hHHHHHHHHHHHHHh
Confidence 99999999999999966544332 1111111111111 123489999998 888888888777543
No 94
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.23 E-value=4.6e-11 Score=92.42 Aligned_cols=115 Identities=27% Similarity=0.338 Sum_probs=69.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcc-cc-c---hHHHHHHHHHHHHHHHHHHHHh-CCCcE
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA-HD-S---LLRRAYYSLGNYIAAQDIKQDL-QKQPV 133 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~i~~~l-~~~~v 133 (259)
+|++.|++||||||+++.|++.++..++.. +.++..+.. .. . ... .. ..-.......+...+ .|..+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~-----D~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~g~~~ 73 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQ-----DEIRRRLAGEDPPSPSDYIE-AE-ERAYQILNAAIRKALRNGNSV 73 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEH-----HHHHHHHCCSSSGCCCCCHH-HH-HHHHHHHHHHHHHHHHTT-EE
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeH-----HHHHHHHcccccccchhHHH-HH-HHHHHHHHHHHHHHHHcCCCc
Confidence 589999999999999999999999666542 344443322 11 1 111 10 001123334444444 67888
Q ss_pred EEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563 134 VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF 199 (259)
Q Consensus 134 i~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~ 199 (259)
|+|....... ....+..+......+..+|+|++|++++.+|+..|+..
T Consensus 74 vvd~~~~~~~------------------~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~ 121 (143)
T PF13671_consen 74 VVDNTNLSRE------------------ERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNRE 121 (143)
T ss_dssp EEESS--SHH------------------HHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCC
T ss_pred eeccCcCCHH------------------HHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCc
Confidence 8885433221 12222333333444667999999999999999999854
No 95
>KOG3347|consensus
Probab=99.22 E-value=1.4e-10 Score=88.50 Aligned_cols=155 Identities=18% Similarity=0.206 Sum_probs=84.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCc-hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEEc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS-IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMD 136 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~D 136 (259)
.|-|.|+|.||+||||++..||+.++..++.....- -..+.+.+++.-.. +.++-..+.+.+.+.+.+...|.|
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c-----~i~DEdkv~D~Le~~m~~Gg~IVD 81 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKC-----HILDEDKVLDELEPLMIEGGNIVD 81 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccC-----ccccHHHHHHHHHHHHhcCCcEEe
Confidence 344999999999999999999999998877321000 00111111111000 011123445566676654556667
Q ss_pred CCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC-CchHHHH--HHHHHHHH
Q psy16563 137 RFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN-FTLEENE--LKKNAKFR 213 (259)
Q Consensus 137 r~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~-~~~~~~~--~e~~~~~~ 213 (259)
-.-+.. +|+ ...|+++.|.||-+++.+|+..||= ......+ .+..-...
T Consensus 82 yHgCd~----------------Fpe------------rwfdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~ 133 (176)
T KOG3347|consen 82 YHGCDF----------------FPE------------RWFDLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVL 133 (176)
T ss_pred ecccCc----------------cch------------hheeEEEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHH
Confidence 322211 111 1258899999999999999999982 2221111 12122333
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563 214 ELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIH 250 (259)
Q Consensus 214 ~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~ 250 (259)
+...+.| .+. ++..-...+.++....|-+++.
T Consensus 134 eea~eSy----~~~-iV~eL~s~~~Eem~~ni~ri~~ 165 (176)
T KOG3347|consen 134 EEARESY----SPK-IVVELQSETKEEMESNISRILN 165 (176)
T ss_pred HHHHHHc----CCc-ceeecCcCCHHHHHHHHHHHHH
Confidence 4444434 333 4444433335777776666654
No 96
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.21 E-value=5.6e-10 Score=88.73 Aligned_cols=71 Identities=15% Similarity=0.139 Sum_probs=50.2
Q ss_pred CCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCC--CCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 174 MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNN--PELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 174 ~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~--~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
..|-..|||+||++++.+|+.+|.+. . . ..+.++.....++.... +.+++||++.+ ++++++++...+.+
T Consensus 89 ~~~~~~v~l~a~~~~l~~Rl~~R~~~-~--a----~~~vl~~Q~~~~ep~~~~e~~~~~id~~~~-~~~~~~~~~~~~~~ 160 (163)
T PRK11545 89 NPNLSFIYLKGDFDVIESRLKARKGH-F--F----KTQMLVTQFETLQEPGADETDVLVVDIDQP-LEGVVASTIEVIKK 160 (163)
T ss_pred CCCEEEEEEECCHHHHHHHHHhccCC-C--C----CHHHHHHHHHHcCCCCCCCCCEEEEeCCCC-HHHHHHHHHHHHHH
Confidence 34567999999999999999999752 1 1 12233333334444432 34889999997 99999999999876
Q ss_pred c
Q psy16563 252 L 252 (259)
Q Consensus 252 ~ 252 (259)
.
T Consensus 161 ~ 161 (163)
T PRK11545 161 G 161 (163)
T ss_pred h
Confidence 4
No 97
>KOG3354|consensus
Probab=99.20 E-value=8.6e-10 Score=84.73 Aligned_cols=162 Identities=22% Similarity=0.321 Sum_probs=91.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccC----CCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-HhCCCcEE
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKST----PPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQ-DLQKQPVV 134 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~l~~~~vi 134 (259)
+|++.|++||||||++++|++.|+..++.- |+.+.+++.+-+.-+.. .++-|.. .....+.. +..++.||
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLnD~--DR~pWL~---~i~~~~~~~l~~~q~vV 88 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLNDD--DRWPWLK---KIAVELRKALASGQGVV 88 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCCcc--cccHHHH---HHHHHHHHHhhcCCeEE
Confidence 699999999999999999999999988753 33344444432211110 1111110 11111222 22566666
Q ss_pred EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCC---CEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHH
Q psy16563 135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP---DLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK 211 (259)
Q Consensus 135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~p---dlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~ 211 (259)
+- ||.+.-. .|.+-.+ +++ .-+....| -.+|+|.++.|++.+|+..|.+.-....
T Consensus 89 lA---CSaLKk~-YRdILr~---sl~--------~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp~~------- 146 (191)
T KOG3354|consen 89 LA---CSALKKK-YRDILRH---SLK--------DGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMPAD------- 146 (191)
T ss_pred EE---hHHHHHH-HHHHHHh---hcc--------cCCccCCccceEEEeeeeccHHHHHHHHhhcccccCCHH-------
Confidence 63 2221111 1111100 000 00111122 2489999999999999999987654332
Q ss_pred HHHHHHHHHHhcC-----CCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 212 FRELLTTIYRNMN-----NPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 212 ~~~~~~~~y~~~~-----~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
.++.++..+. +.+++.||....++++++..|.+.+..
T Consensus 147 ---lleSQf~~LE~p~~~e~div~isv~~~~~e~iv~tI~k~~~~ 188 (191)
T KOG3354|consen 147 ---LLESQFATLEAPDADEEDIVTISVKTYSVEEIVDTIVKMVAL 188 (191)
T ss_pred ---HHHHHHHhccCCCCCccceEEEeeccCCHHHHHHHHHHHHHh
Confidence 2333444442 225788998866699999999887753
No 98
>PRK08118 topology modulation protein; Reviewed
Probab=99.20 E-value=9e-11 Score=93.64 Aligned_cols=98 Identities=19% Similarity=0.252 Sum_probs=61.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEEcCCc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFW 139 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~Dr~~ 139 (259)
.|+|.|++||||||+|+.|++.++..++... . ++.... .. ........+.++..+++..+|+|..+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD-----~---l~~~~~-w~-----~~~~~~~~~~~~~~~~~~~wVidG~~ 68 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLD-----A---LFWKPN-WE-----GVPKEEQITVQNELVKEDEWIIDGNY 68 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecc-----h---hhcccC-Cc-----CCCHHHHHHHHHHHhcCCCEEEeCCc
Confidence 4999999999999999999999998866431 1 111100 00 00011222233344455667888543
Q ss_pred cchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563 140 HSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197 (259)
Q Consensus 140 ~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~ 197 (259)
..+.. .. +..+|.+|||++|.+++..|+.+|.
T Consensus 69 ~~~~~--------------------~~------l~~~d~vi~Ld~p~~~~~~R~~~R~ 100 (167)
T PRK08118 69 GGTMD--------------------IR------LNAADTIIFLDIPRTICLYRAFKRR 100 (167)
T ss_pred chHHH--------------------HH------HHhCCEEEEEeCCHHHHHHHHHHHH
Confidence 32210 00 1248999999999999999998883
No 99
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.18 E-value=9.7e-10 Score=99.19 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=45.6
Q ss_pred CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
.|.+|||++|++++.+|+..|.+.+..+.. .....+...+...+. ..++||++++ ++++..++.++++.+
T Consensus 124 ~D~iI~V~ap~e~ri~Rl~~rRg~s~~~a~---~ri~~Q~~~e~k~~~---AD~vIdN~~s-~e~l~~~v~~~l~~~ 193 (395)
T PRK03333 124 FHLVVVVDADVEVRVRRLVEQRGMAEADAR---ARIAAQASDEQRRAV---ADVWLDNSGT-PDELVEAVRALWADR 193 (395)
T ss_pred CCEEEEEECCHHHHHHHHHhcCCCCHHHHH---HHHHhcCChHHHHHh---CCEEEECCCC-HHHHHHHHHHHHHHH
Confidence 588999999999999999986544433221 010111111112222 3588998887 999999999888654
No 100
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.18 E-value=7.5e-10 Score=106.22 Aligned_cols=79 Identities=16% Similarity=0.282 Sum_probs=48.0
Q ss_pred CCCEEEEEecCHHHHHHHHhhc----cCCchHHHHHHHHHHHHHHHHHHHHhc---C-CCCeEEEeCCCCCHhhHHHHHH
Q psy16563 175 KPDLVIYLTVSEAIRLQRLSRR----KNFTLEENELKKNAKFRELLTTIYRNM---N-NPELVFVDNSEKSVHESSNDIV 246 (259)
Q Consensus 175 ~pdlvI~L~a~~ev~~~Rl~~R----~~~~~~~~~~e~~~~~~~~~~~~y~~~---~-~~~~~vID~s~~~~eev~~~I~ 246 (259)
..++.|||+|+++++.+|..+. +.....+..++ ...-++ ..+..+.. . .+..++||++..+++|+++.|.
T Consensus 573 ~a~~kifl~a~~~~Ra~Rr~~~~~~~~~~~~~~~~~~-~~~~Rd-~~d~~R~~~pl~~~~da~~idts~~~~~~v~~~i~ 650 (661)
T PRK11860 573 DAALKVFLTASAEARAERRYKQLISKGISANIADLLA-DLEARD-ARDTQRSVAPLKPAQDALLLDNSDLTIEQAVAQVL 650 (661)
T ss_pred CCCeEEEEECChhHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHh-HHhhcCCCCCCccCCCEEEEECCCCCHHHHHHHHH
Confidence 3678999999999999997652 21111111100 111111 11111111 1 1247999999988999999999
Q ss_pred HHHhccccc
Q psy16563 247 ELIHNLPMF 255 (259)
Q Consensus 247 ~~l~~~~~~ 255 (259)
+.+++...|
T Consensus 651 ~~i~~~~~~ 659 (661)
T PRK11860 651 DWWQERQPF 659 (661)
T ss_pred HHHHhhCCC
Confidence 999875544
No 101
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=99.18 E-value=1.1e-11 Score=96.62 Aligned_cols=116 Identities=23% Similarity=0.347 Sum_probs=77.3
Q ss_pred CCCcEEEcCCccc-hhhhhhhhhhccccCCCCCcch----hhhhcc-cccCCC-CCEEEEEecCHHHHHHHHhhccCCch
Q psy16563 129 QKQPVVMDRFWHS-TSAYGMANELVKNSDLKLPDED----DDIYSW-PKDLMK-PDLVIYLTVSEAIRLQRLSRRKNFTL 201 (259)
Q Consensus 129 ~~~~vi~Dr~~~s-~~~~~~~~~~~~~~~~~l~~~~----~~l~~~-~~~~~~-pdlvI~L~a~~ev~~~Rl~~R~~~~~ 201 (259)
.+..+|+||++.+ ...|.......|.+ ++.. ..++.+ ....+. ||++|||++||+++++||++||+...
T Consensus 18 ~~~~~i~eRsi~sd~~vF~~~~~~~g~l----~~~e~~~Y~~~~~~l~~~~~~~pdl~IYL~~~~e~~~~RI~kRgR~~E 93 (146)
T PF01712_consen 18 TKQNVIMERSIYSDDFVFAKMLFKSGYL----SKEEYDLYDKLFDELIEEIPKSPDLIIYLDASPETCLERIKKRGREEE 93 (146)
T ss_dssp SSSEEEEES-HHHHHHTHHHHHHHTTSS-----HHHHHHHHHHHHHHHHHCCHH-SEEEEEE--HHHHHHHHHHCTTGGG
T ss_pred cCCCceecCCeeechHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhccCCeEEEEeCCHHHHHHHHHHhCCchh
Confidence 5889999999998 55554331112212 2333 233333 244566 99999999999999999999996532
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhcC----CCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 202 EENELKKNAKFRELLT-TIYRNMN----NPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 202 ~~~~~e~~~~~~~~~~-~~y~~~~----~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
. ....+|++++. +.|..+. ..++++||++..++.+..+.+...++++
T Consensus 94 ~----~i~~~Yl~~L~~~~y~~~~~~~~~~~vl~id~~~~d~~~~~~~~~~~~~~i 145 (146)
T PF01712_consen 94 K----NIPLEYLERLHEEAYEDWLKKYDSTPVLVIDADNLDFVENPEDIEQVINQI 145 (146)
T ss_dssp T----TS-HHHHHHHHHHHHCCHHSCCTTTTGCEEEECEEECCSHHTTHHHHHCCC
T ss_pred c----CCCHHHHHHHhHHHHHHHHHhCCCCceEEEECCccCcccCHHHHHHHHHhc
Confidence 1 11567999999 7999883 3468999999855888888888887654
No 102
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.18 E-value=1.9e-10 Score=88.95 Aligned_cols=158 Identities=21% Similarity=0.283 Sum_probs=90.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcc--------cccCCCCchHHHHHHhccccchHHH---HHHHHH------HHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKAS--------LKSTPPSSIMSLREKFDAHDSLLRR---AYYSLG------NYIAAQ 122 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~--------~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~------~~~~~~ 122 (259)
+|++.||+|+||-|+...++..+... ++..|...+.+--+-+.+. ++.+. ..|++. .|.+-.
T Consensus 7 lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~-eF~~~a~~g~FAlsWqAhGL~Ygip~ 85 (192)
T COG3709 7 LIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEA-EFNTRAGQGAFALSWQAHGLSYGIPA 85 (192)
T ss_pred EEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHH-HHHHHhhcCceeEEehhcCccccCch
Confidence 39999999999999999999988754 2344443221110000000 00000 011111 122233
Q ss_pred HHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCch
Q psy16563 123 DIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL 201 (259)
Q Consensus 123 ~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~ 201 (259)
.|-.++ .|.+|+...+ . -.+|+..... . --+++.|.++|++..+|+..||++++
T Consensus 86 eId~wl~~G~vvl~NgS----R-------------a~Lp~arrry-~-------~Llvv~ita~p~VLaqRL~~RGREs~ 140 (192)
T COG3709 86 EIDLWLAAGDVVLVNGS----R-------------AVLPQARRRY-P-------QLLVVCITASPEVLAQRLAERGRESR 140 (192)
T ss_pred hHHHHHhCCCEEEEecc----H-------------hhhHHHHHhh-h-------cceeEEEecCHHHHHHHHHHhccCCH
Confidence 444445 4666666421 0 1122222111 1 12488999999999999999998765
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 202 EENELKKNAKFRELLTTIYR-NMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 202 ~~~~~e~~~~~~~~~~~~y~-~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
++. ..++...-. .....++++||||+. ++...+.+.+.|.+-
T Consensus 141 eeI--------~aRL~R~a~~~~~~~dv~~idNsG~-l~~ag~~ll~~l~~~ 183 (192)
T COG3709 141 EEI--------LARLARAARYTAGPGDVTTIDNSGE-LEDAGERLLALLHQD 183 (192)
T ss_pred HHH--------HHHHHhhcccccCCCCeEEEcCCCc-HHHHHHHHHHHHHhh
Confidence 542 223221111 112456999999999 999999999998743
No 103
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.17 E-value=2.8e-10 Score=97.41 Aligned_cols=160 Identities=22% Similarity=0.212 Sum_probs=78.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEEcC
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDR 137 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~Dr 137 (259)
|+|+|+|.|||||||+++.|++.+.......---+-+.+. +..+. +.....-...+..+...++..+ +..+||+|.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~~-y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd 78 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRND-YADSKKEKEARGSLKSAVERALSKDTIVILDD 78 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTSS-S--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchhh-hhchhhhHHHHHHHHHHHHHhhccCeEEEEeC
Confidence 6899999999999999999999887532110000001111 11111 1000000001122333444444 578899984
Q ss_pred CccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHH
Q psy16563 138 FWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217 (259)
Q Consensus 138 ~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~ 217 (259)
-. |. +| .++++++.++....+..+||++||.+.+.+|-..|+...+. ..+.++.+.
T Consensus 79 ~n-----Yi------Kg-------~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~------~~e~i~~m~ 134 (270)
T PF08433_consen 79 NN-----YI------KG-------MRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERY------PEETIDDMI 134 (270)
T ss_dssp --------S------HH-------HHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-------HHHHHHHH
T ss_pred Cc-----hH------HH-------HHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCC------CHHHHHHHH
Confidence 22 11 11 25677777777777889999999999999999999854322 123445555
Q ss_pred HHHHhcC-----CCCeEEEeCC--CCCHhhHHHHH
Q psy16563 218 TIYRNMN-----NPELVFVDNS--EKSVHESSNDI 245 (259)
Q Consensus 218 ~~y~~~~-----~~~~~vID~s--~~~~eev~~~I 245 (259)
..|+.-. +.+.++|+++ ..+.+++++.+
T Consensus 135 ~RfE~P~~~nrWD~plf~i~~~~~~~~~~~I~~~l 169 (270)
T PF08433_consen 135 QRFEEPDPKNRWDSPLFTIDSSDEELPLEEIWNAL 169 (270)
T ss_dssp HH---TTSS-GGGS-SEEEE-TTS---HHHHHHHH
T ss_pred HHhcCCCCCCCccCCeEEEecCCCCCCHHHHHHHH
Confidence 5565432 2355777743 23356666665
No 104
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.17 E-value=1.8e-10 Score=90.48 Aligned_cols=160 Identities=18% Similarity=0.169 Sum_probs=91.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHH---HHHHh--CCCc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQD---IKQDL--QKQP 132 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~l--~~~~ 132 (259)
..+|.++|++||||||+|..|.+.|.......--.+++.+|..+..+-++.+ .++..-.++ +..++ .|.+
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~-----edR~eniRRvaevAkll~daG~i 97 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSR-----EDRIENIRRVAEVAKLLADAGLI 97 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCCh-----HHHHHHHHHHHHHHHHHHHCCeE
Confidence 3469999999999999999999999877655433456677776665544322 122222222 22233 3555
Q ss_pred EEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHH------hhccCCchHHHHH
Q psy16563 133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL------SRRKNFTLEENEL 206 (259)
Q Consensus 133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl------~~R~~~~~~~~~~ 206 (259)
|+.- ++ |. |... ++........ ...+-||++||.++|.+|= ++|.++
T Consensus 98 viva-~I-SP--~r~~--------------R~~aR~~~~~--~~FiEVyV~~pl~vce~RDpKGLYkKAr~Ge------- 150 (197)
T COG0529 98 VIVA-FI-SP--YRED--------------RQMARELLGE--GEFIEVYVDTPLEVCERRDPKGLYKKARAGE------- 150 (197)
T ss_pred EEEE-ee-Cc--cHHH--------------HHHHHHHhCc--CceEEEEeCCCHHHHHhcCchHHHHHHHcCC-------
Confidence 5553 21 11 1111 1111111111 1356899999999999982 111111
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 207 KKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 207 e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
...+--+..-|+.-. .+.+++|++..++++.++.|.+.|....
T Consensus 151 ---I~~fTGid~pYE~P~-~Pel~l~t~~~~vee~v~~i~~~l~~~~ 193 (197)
T COG0529 151 ---IKNFTGIDSPYEAPE-NPELHLDTDRNSVEECVEQILDLLKERK 193 (197)
T ss_pred ---CCCCcCCCCCCCCCC-CCeeEeccccCCHHHHHHHHHHHHHhcc
Confidence 001111222232221 2469999988789999999999997653
No 105
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.17 E-value=9e-10 Score=86.08 Aligned_cols=117 Identities=16% Similarity=0.051 Sum_probs=62.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHH-Hhcccc-chHHHHHHHHHHHHHHHHHHH-H-hCCCcEEE
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLRE-KFDAHD-SLLRRAYYSLGNYIAAQDIKQ-D-LQKQPVVM 135 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~i~~-~-l~~~~vi~ 135 (259)
+|+|.|++||||||+++.|++.++..++....-....... .....+ .......+.. ........ . ..+..+|+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~vVi 77 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQ---ALTDALLAKLASAGEGVVV 77 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCccchhhHHH---HHHHHHHHHHHhCCCCEEE
Confidence 4899999999999999999999887766432111010000 111111 0000011110 11111111 2 25777888
Q ss_pred cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563 136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF 199 (259)
Q Consensus 136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~ 199 (259)
|...... ...+.+..++ ...+-.+|||++|++++.+|+.+|...
T Consensus 78 d~~~~~~------------------~~r~~~~~~~--~~~~~~~v~l~~~~~~~~~R~~~R~~~ 121 (150)
T cd02021 78 ACSALKR------------------IYRDILRGGA--ANPRVRFVHLDGPREVLAERLAARKGH 121 (150)
T ss_pred EeccccH------------------HHHHHHHhcC--CCCCEEEEEEECCHHHHHHHHHhcccC
Confidence 7433211 0112222222 123556999999999999999999643
No 106
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.17 E-value=7.4e-10 Score=102.31 Aligned_cols=149 Identities=15% Similarity=0.226 Sum_probs=79.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCC----chHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhC-CCcEE
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS----SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQ-KQPVV 134 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~~vi 134 (259)
.|+|.|++||||||+++.|++.++..++..... .+..+.+.|.... ...+ +....+.++.... ...|+
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g~~i~~i~~~~G---e~~f----r~~E~~~l~~l~~~~~~Vi 74 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSVRRIFEEDG---EEYF----RLKEKELLRELVERDNVVV 74 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcCCCHHHHHHHhh---hHHH----HHHHHHHHHHHhhcCCEEE
Confidence 499999999999999999999999888754210 0001111111111 0111 1112222333332 23333
Q ss_pred EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q psy16563 135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214 (259)
Q Consensus 135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~ 214 (259)
.. |+++ +.-++....+. .+.+|||++|++++.+|+..|+++.-.. ..+...+..+
T Consensus 75 s~---------------Gggv-v~~~~~r~~l~--------~~~vI~L~as~e~l~~Rl~~~~RPLl~~-~~e~l~~L~~ 129 (488)
T PRK13951 75 AT---------------GGGV-VIDPENRELLK--------KEKTLFLYAPPEVLMERVTTENRPLLRE-GKERIREIWE 129 (488)
T ss_pred EC---------------CCcc-ccChHHHHHHh--------cCeEEEEECCHHHHHHHhccCCCCCccc-cHHHHHHHHH
Confidence 32 3332 10011122221 2458999999999999998765421111 0111223344
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCHhhHHHHH
Q psy16563 215 LLTTIYRNMNNPELVFVDNSEKSVHESSNDI 245 (259)
Q Consensus 215 ~~~~~y~~~~~~~~~vID~s~~~~eev~~~I 245 (259)
+....|.++ .+||+++.++++++++|
T Consensus 130 ~R~~lY~~~-----~~IDt~~~s~~e~~~~i 155 (488)
T PRK13951 130 RRKQFYTEF-----RGIDTSKLNEWETTALV 155 (488)
T ss_pred HHHHHHhcc-----cEEECCCCCHHHHHHHH
Confidence 445556543 58999998787777666
No 107
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.16 E-value=3.4e-10 Score=98.58 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=64.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh-hcccccCCCCchHHHHHHhcc-cc--c--hH-HHHHHHHHHHHHHHHHHHHh-CC
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKL-KASLKSTPPSSIMSLREKFDA-HD--S--LL-RRAYYSLGNYIAAQDIKQDL-QK 130 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~-~~~~~~~p~~~~~~~~~~~~~-~~--~--~~-~~~~~~~~~~~~~~~i~~~l-~~ 130 (259)
.+|++.|++||||||+|+.|++.+ +..++.. +.+++.... .. . +. ..... . .......+...+ .|
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~-----D~~r~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~g 75 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNR-----DDLRQSLFGHGEWGEYKFTKEKEDL-V-TKAQEAAALAALKSG 75 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEec-----cHHHHHhcCCCcccccccChHHHHH-H-HHHHHHHHHHHHHcC
Confidence 469999999999999999999999 5555532 334443321 11 0 00 00000 0 011122233333 57
Q ss_pred CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF 199 (259)
Q Consensus 131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~ 199 (259)
..+|+|.+..+.... ..+..........-.+|||++|.+++.+|+..|++.
T Consensus 76 ~~vIid~~~~~~~~~------------------~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~ 126 (300)
T PHA02530 76 KSVIISDTNLNPERR------------------RKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGER 126 (300)
T ss_pred CeEEEeCCCCCHHHH------------------HHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcC
Confidence 788888665432111 111111111111223699999999999999999754
No 108
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.14 E-value=4.4e-10 Score=92.13 Aligned_cols=74 Identities=11% Similarity=0.239 Sum_probs=43.2
Q ss_pred EEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcccccc
Q psy16563 178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPMFK 256 (259)
Q Consensus 178 lvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~~~~ 256 (259)
++|||++|++++.+|.. |+-... ...+....+..... .|+.. ..+.++||++..++++++++|.+.+.....++
T Consensus 124 i~V~L~~~~e~~~~R~~-r~l~~~--~~~~~~~~l~~~r~-~Y~~p-~~ad~~Idt~~~~~~~vv~~Il~~l~~~~~~~ 197 (198)
T PRK03846 124 IEVFVDTPLAICEARDP-KGLYKK--ARAGEIRNFTGIDS-VYEAP-ESPEIHLDTGEQLVTNLVEQLLDYLRQRDIIR 197 (198)
T ss_pred EEEEEcCCHHHHHhcCc-hhHHHH--hhcCCccCcccccc-cCCCC-CCCCEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 47999999999999932 210000 00000011111222 25422 11358999988779999999999998765443
No 109
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.14 E-value=1.1e-10 Score=95.63 Aligned_cols=172 Identities=16% Similarity=0.142 Sum_probs=90.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhccc---ccCCCC--chHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASL---KSTPPS--SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQP 132 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~---~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 132 (259)
..+|+|.|++||||||+++.|.+.++... +..... ..............+ ...-+++...+.+.+..+++|..
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~--d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINY--DHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCc--cChhhhcHHHHHHHHHHHHcCCc
Confidence 35799999999999999999999999652 221110 000000000000000 00113344455666777667777
Q ss_pred EEEcCCccchhhhhhhhhhccccCCCCCcchhhhhc-ccccCCCCCEEEEEecCHHHHHHHHhhccCC---chHHHHHHH
Q psy16563 133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS-WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF---TLEENELKK 208 (259)
Q Consensus 133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~---~~~~~~~e~ 208 (259)
|...-|-+.+-........-...++.+.++...+++ .+. ...|+.|||++|.++|..|...|+-. ...+..
T Consensus 86 v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr--~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~v--- 160 (218)
T COG0572 86 VDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLR--DLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESV--- 160 (218)
T ss_pred ccccccchhcccccCCccccCCCcEEEEecccccccHHHH--hhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHH---
Confidence 666655444322211000000111233444444443 222 23689999999999999998777521 112222
Q ss_pred HHHHHHHHHHHHHhcCCC----CeEEEeCCCC
Q psy16563 209 NAKFRELLTTIYRNMNNP----ELVFVDNSEK 236 (259)
Q Consensus 209 ~~~~~~~~~~~y~~~~~~----~~~vID~s~~ 236 (259)
...|...++..|+++-.| ..++|...+.
T Consensus 161 i~qy~~~vkp~~~~fIeptk~~ADiiip~~~~ 192 (218)
T COG0572 161 IEQYVKTVRPMYEQFIEPTKKYADIIIPSGGK 192 (218)
T ss_pred HHHHHHhhChhhhhccCcccccceEEeecCCc
Confidence 233555666677766332 3567766653
No 110
>PRK07667 uridine kinase; Provisional
Probab=99.14 E-value=8.8e-10 Score=90.01 Aligned_cols=139 Identities=10% Similarity=0.050 Sum_probs=66.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhccc-----ccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHH-HHHHhCCC
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASL-----KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQD-IKQDLQKQ 131 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~-----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~l~~~ 131 (259)
..+|+|.|++||||||+++.|++.++... ++.+..-.+....................+...+... +.++..+.
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~~ 96 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNET 96 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCCC
Confidence 35799999999999999999999986432 2222111111111111111110000011122222222 23333455
Q ss_pred cEEEcCCccchhhhhhhh-hhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563 132 PVVMDRFWHSTSAYGMAN-ELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF 199 (259)
Q Consensus 132 ~vi~Dr~~~s~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~ 199 (259)
.+....|-..+....... ... ..++.+.++...+..-.. ...|.+|||+||++++++|+.+|++.
T Consensus 97 ~i~~P~~d~~~~~~~~~~~~~~-~~~vvIvEG~~l~~~~~~--~~~d~~v~V~~~~~~~~~R~~~r~~~ 162 (193)
T PRK07667 97 KLTLPFYHDETDTCEMKKVQIP-IVGVIVIEGVFLQRKEWR--DFFHYMVYLDCPRETRFLRESEETQK 162 (193)
T ss_pred eEEEeeeccccccccccceecC-CCCEEEEEehhhhhhhHH--hhceEEEEEECCHHHHHHHHhcccHh
Confidence 555554443322111000 000 001112222222221111 23699999999999999999998643
No 111
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.13 E-value=6.8e-10 Score=90.08 Aligned_cols=157 Identities=16% Similarity=0.140 Sum_probs=82.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcc-----cccCCCCch------------HHHHHHhccccchHHHHHHHHHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSSI------------MSLREKFDAHDSLLRRAYYSLGNYIA 120 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~-----~~~~p~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (259)
+.+|+|.||+||||||+++.|.+.+... +...|+.++ +.+......+..+ ....|.-..|..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~-e~~~~~g~~YGt 82 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFL-EWAEVHDNYYGT 82 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeE-EEEEECCeeecC
Confidence 4569999999999999999998876432 122222111 2233332222100 000000001111
Q ss_pred -HHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCC--EEEEEecC-HHHHHHHHhh
Q psy16563 121 -AQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPD--LVIYLTVS-EAIRLQRLSR 195 (259)
Q Consensus 121 -~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pd--lvI~L~a~-~ev~~~Rl~~ 195 (259)
.+.+...+ +|..+|+|--+. +...+... .|+ ++||+.+| .+++.+|+..
T Consensus 83 ~~~~i~~~~~~g~~~i~d~~~~---------------------g~~~l~~~-----~~~~~~~Ifi~pps~e~l~~RL~~ 136 (186)
T PRK14737 83 PKAFIEDAFKEGRSAIMDIDVQ---------------------GAKIIKEK-----FPERIVTIFIEPPSEEEWEERLIH 136 (186)
T ss_pred cHHHHHHHHHcCCeEEEEcCHH---------------------HHHHHHHh-----CCCCeEEEEEECCCHHHHHHHHHh
Confidence 12244444 578888872111 11122211 133 58999985 7999999999
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 196 RKNFTLEENELKKNAKFRELLTTIYRNM--NNPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 196 R~~~~~~~~~~e~~~~~~~~~~~~y~~~--~~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
|+..+..+. + +++..+..+. .....++|+++ . +++..+++.++|..
T Consensus 137 R~~~s~e~i--~------~Rl~~~~~e~~~~~~~D~vI~N~-d-le~a~~ql~~ii~~ 184 (186)
T PRK14737 137 RGTDSEESI--E------KRIENGIIELDEANEFDYKIIND-D-LEDAIADLEAIICG 184 (186)
T ss_pred cCCCCHHHH--H------HHHHHHHHHHhhhccCCEEEECc-C-HHHHHHHHHHHHhc
Confidence 986543321 1 1111111111 12234777777 4 89999999988864
No 112
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.12 E-value=9.6e-10 Score=103.27 Aligned_cols=200 Identities=14% Similarity=0.137 Sum_probs=108.2
Q ss_pred ccccccHHHHHHHHHh----hccCChHHHHHHH-HHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 8 FAQYPSLVSVLSILKS----AQYSSLPEVEELL-NIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 8 ~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..++-|-..+++.|.. |..=..|++.+++ ..|+.. ...+. +|+|+|++||||||+++.|++.+
T Consensus 349 ~~~~~sgt~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~r----------~~~g~--~Ivl~Gl~GSGKSTia~~La~~L 416 (568)
T PRK05537 349 TVLTISGTELRRRLREGLEIPEWFSFPEVVAELRRTYPPR----------HKQGF--TVFFTGLSGAGKSTIAKALMVKL 416 (568)
T ss_pred ceeccCHHHHHHHHHCCCCCChhhcHHHHHHHHHHHhccc----------cCCCe--EEEEECCCCChHHHHHHHHHHHh
Confidence 3577788999999988 3344556666555 555422 23333 59999999999999999999999
Q ss_pred hc------ccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHH----HHHHHh-CCCcEEEcCCccchhhhhhhhhh
Q psy16563 83 KA------SLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQ----DIKQDL-QKQPVVMDRFWHSTSAYGMANEL 151 (259)
Q Consensus 83 ~~------~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~ 151 (259)
+. .++. .+.+++.+..+..+... .+..... .-...+ .|..||+|... .+...
T Consensus 417 ~~~~g~~~~~lD-----~D~vr~~l~ge~~f~~~-----er~~~~~~l~~~a~~v~~~Gg~vI~~~~~----p~~~~--- 479 (568)
T PRK05537 417 MEMRGRPVTLLD-----GDVVRKHLSSELGFSKE-----DRDLNILRIGFVASEITKNGGIAICAPIA----PYRAT--- 479 (568)
T ss_pred hhccCceEEEeC-----CcHHHHhccCCCCCCHH-----HHHHHHHHHHHHHHHHHhCCCEEEEEeCC----chHHH---
Confidence 85 2332 23444433322222111 0111111 111122 58888888421 11110
Q ss_pred ccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEE
Q psy16563 152 VKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFV 231 (259)
Q Consensus 152 ~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vI 231 (259)
.......+.... .-.+|||++|++++.+|+.+ +-... ...+....+...... |... ..+.++|
T Consensus 480 -----------R~~nr~llk~~g-~fivV~L~~p~e~l~~R~rr-~Ll~~--~~~~~i~~l~~~R~~-yy~p-~~Adl~I 542 (568)
T PRK05537 480 -----------RREVREMIEAYG-GFIEVHVATPLEVCEQRDRK-GLYAK--AREGKIKGFTGISDP-YEPP-ANPELVI 542 (568)
T ss_pred -----------HHHHHHHHhhcC-CEEEEEEcCCHHHHHHhccc-ccccc--chhchhhcccccccc-ccCC-CCCcEEE
Confidence 111111121111 12489999999999999732 21100 000000111111111 2211 1236999
Q ss_pred eCCCCCHhhHHHHHHHHHhccc
Q psy16563 232 DNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 232 D~s~~~~eev~~~I~~~l~~~~ 253 (259)
|+++.++++++++|.+.|....
T Consensus 543 Dt~~~s~~eiv~~Il~~L~~~g 564 (568)
T PRK05537 543 DTTNVTPDECAHKILLYLEEKG 564 (568)
T ss_pred ECCCCCHHHHHHHHHHHHHHcC
Confidence 9998779999999999987653
No 113
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.11 E-value=3.8e-09 Score=88.28 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=27.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
++|+|.|++||||||+++.|++.+|..++.
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~ 34 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLD 34 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 569999999999999999999999977654
No 114
>PTZ00301 uridine kinase; Provisional
Probab=99.11 E-value=5.7e-10 Score=92.12 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=66.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcc-------cccCCC-----CchHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKAS-------LKSTPP-----SSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQ 126 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~-------~~~~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 126 (259)
++|+|.|++||||||+|+.|++.+... .+.... ...........+ + ....+++...+.+.+..
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~---~--d~p~a~D~~~l~~~l~~ 78 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTN---Y--DHPKSLEHDLLTTHLRE 78 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCC---C--CChhhhCHHHHHHHHHH
Confidence 579999999999999999998877421 111111 000000000000 0 00112333344555555
Q ss_pred HhCCCcEEEcCCccchhhhhhh-hhhccccCCCCCcchhhhhc-ccccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563 127 DLQKQPVVMDRFWHSTSAYGMA-NELVKNSDLKLPDEDDDIYS-WPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197 (259)
Q Consensus 127 ~l~~~~vi~Dr~~~s~~~~~~~-~~~~~~~~~~l~~~~~~l~~-~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~ 197 (259)
+.+|..+-...|.+..-..... ..+. ..++.+.++.+.++. .+. ...|+.|||++|.++++.|...|.
T Consensus 79 L~~g~~i~~P~yd~~~~~~~~~~~~i~-p~~ViIvEGi~~l~~~~l~--~l~D~~ifvd~~~d~~~~Rr~~Rd 148 (210)
T PTZ00301 79 LKSGKTVQIPQYDYVHHTRSDTAVTMT-PKSVLIVEGILLFTNAELR--NEMDCLIFVDTPLDICLIRRAKRD 148 (210)
T ss_pred HHcCCcccCCCcccccCCcCCceEEeC-CCcEEEEechhhhCCHHHH--HhCCEEEEEeCChhHHHHHHHhhh
Confidence 4456555444444332111000 0000 011233455554422 122 236899999999999999998886
No 115
>PHA03136 thymidine kinase; Provisional
Probab=99.11 E-value=1.2e-09 Score=96.03 Aligned_cols=85 Identities=15% Similarity=0.094 Sum_probs=54.5
Q ss_pred CcEEEcCCccchh-hhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHH
Q psy16563 131 QPVVMDRFWHSTS-AYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKN 209 (259)
Q Consensus 131 ~~vi~Dr~~~s~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~ 209 (259)
..+++||...+.. .|......-|.+ . ......+..+....+.||++|||+++++++++||++|++..+ . ..
T Consensus 149 ~~~i~DRhpisA~lcFp~~~~~lG~l--s-y~~l~~ll~~~~~~p~pD~IIyL~l~~e~~~~RI~kRgR~~E--~---I~ 220 (378)
T PHA03136 149 ILFIIDRHPLAACLCFPAAQFLSGAL--E-FGDLIALISGIPDEPHGGNIVIMDLDECEHAERIIARGRPGE--A---ID 220 (378)
T ss_pred eEEEeecCcchHhhcCCHHHHhcCCC--C-HHHHHHHHhhCcCCCCCCEEEEEeCCHHHHHHHHHHcCCCcc--C---CC
Confidence 4678899877643 232222111111 1 122333334556667899999999999999999999996532 1 14
Q ss_pred HHHHHHHHHHHHhc
Q psy16563 210 AKFRELLTTIYRNM 223 (259)
Q Consensus 210 ~~~~~~~~~~y~~~ 223 (259)
..|++++.+.|..+
T Consensus 221 ~~YL~~L~~~Y~~~ 234 (378)
T PHA03136 221 VRFLCALHNIYICF 234 (378)
T ss_pred HHHHHHHHHHHHHH
Confidence 56888888888765
No 116
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.10 E-value=5e-10 Score=92.45 Aligned_cols=181 Identities=14% Similarity=0.146 Sum_probs=85.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcc---cccCCCC--chHH--HHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKAS---LKSTPPS--SIMS--LREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQ 131 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~---~~~~p~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 131 (259)
.+|+|.|++||||||+++.|+..++.. .+..... .... ..+..... +.. ..+.+...+.+.+..+..|.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~l~~~l~~l~~g~ 82 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTN--FDH--PDAFDNDLLYEHLKNLKNGS 82 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCC--CCC--ccHhHHHHHHHHHHHHHCCC
Confidence 359999999999999999999988631 1211110 0000 01100000 000 00112223445555555666
Q ss_pred cEEEcCCccchhhhhhhh-hhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC----CchHHHHH
Q psy16563 132 PVVMDRFWHSTSAYGMAN-ELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN----FTLEENEL 206 (259)
Q Consensus 132 ~vi~Dr~~~s~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~----~~~~~~~~ 206 (259)
.+-...|.+.+....... ... ..+..+.++...++.- ......|++|||++|.+++++|+..|.. .+..+.
T Consensus 83 ~v~~p~yd~~~~~~~~~~~~~~-~~~~vIieG~~~~~~~-~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~-- 158 (207)
T TIGR00235 83 PIDVPVYDYVNHTRPKETVHIE-PKDVVILEGIMPLFDE-RLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSV-- 158 (207)
T ss_pred CEecccceeecCCCCCceEEeC-CCCEEEEEehhhhchH-hHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHH--
Confidence 666555544321110000 000 0011122222222110 0012368999999999999999988752 122111
Q ss_pred HHHHHHHHHHHHHHHhcC----CCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563 207 KKNAKFRELLTTIYRNMN----NPELVFVDNSEKSVHESSNDIVELIH 250 (259)
Q Consensus 207 e~~~~~~~~~~~~y~~~~----~~~~~vID~s~~~~eev~~~I~~~l~ 250 (259)
...+.......|...- ....++|+++.. -+...+-+...+.
T Consensus 159 --~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~-~~~~~~~~~~~~~ 203 (207)
T TIGR00235 159 --IDQYRKTVRPMYEQFVEPTKQYADLIIPEGGR-NEVAINVLDTKIK 203 (207)
T ss_pred --HHHHHHhhhhhHHHhCcccccccEEEEcCCCC-chHHHHHHHHHHH
Confidence 1223333344443331 223588887665 5666665555443
No 117
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.10 E-value=9e-10 Score=89.19 Aligned_cols=166 Identities=13% Similarity=0.085 Sum_probs=81.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEEc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMD 136 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~D 136 (259)
..+|+|.|++||||||+++.|+..+........--..+.+++.+..+..+........ ...+.......+ .|..||.|
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~~VI~d 96 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKEN-IRRIGEVAKLFVRNGIIVITS 96 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHH-HHHHHHHHHHHHcCCCEEEEe
Confidence 3459999999999999999999988532210000012344443322211111000000 001111122223 58889988
Q ss_pred CCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHH
Q psy16563 137 RFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL 216 (259)
Q Consensus 137 r~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~ 216 (259)
-.... . .....+....... +..+|||++|.+++.+|-. ++-. .....+....+ ...
T Consensus 97 ~~~~~----~--------------~~r~~~~~~~~~~--~~~~v~l~~~~e~~~~R~~-~~l~--~~~~~~~~~~l-~~~ 152 (184)
T TIGR00455 97 FISPY----R--------------ADRQMVRELIEKG--EFIEVFVDCPLEVCEQRDP-KGLY--KKARNGEIKGF-TGI 152 (184)
T ss_pred cCCCC----H--------------HHHHHHHHhCcCC--CeEEEEEeCCHHHHHHhCc-hhHH--HHHhcCCccCc-ccc
Confidence 32111 0 0111222222211 4568999999999999932 1100 00000000001 112
Q ss_pred HHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563 217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249 (259)
Q Consensus 217 ~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l 249 (259)
...|.+. ..+.++||++..++++++++|.+.|
T Consensus 153 ~~~y~~p-~~adl~Idt~~~~~~~~~~~i~~~l 184 (184)
T TIGR00455 153 DSPYEAP-ENPEVVLDTDQNDREECVGQIIEKL 184 (184)
T ss_pred cCCCCCC-CCCcEEEECCCCCHHHHHHHHHHhC
Confidence 2223221 2246999999877999999887653
No 118
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.09 E-value=1.8e-09 Score=86.61 Aligned_cols=161 Identities=15% Similarity=0.153 Sum_probs=77.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchH--HHHHHHHHHHHHHHHHHHH-h-CCCcEEE
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLL--RRAYYSLGNYIAAQDIKQD-L-QKQPVVM 135 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~-l-~~~~vi~ 135 (259)
+|+|.|++||||||+++.|+..+........--..+.+++.+...-.+. .+... . ... ..+... . .|..|++
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~-~--~~~-~~~a~~~~~~g~~vi~ 81 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTN-I--RRI-GFVANLLTRHGVIVLV 81 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHH-H--HHH-HHHHHHHHhCCCEEEE
Confidence 5999999999999999999999853221000001122232221110000 00000 0 000 111221 1 4677777
Q ss_pred cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Q psy16563 136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL 215 (259)
Q Consensus 136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~ 215 (259)
|.... +. .....+... ...-.+|||++|++++.+|. .|+ .-.. ...+ .+..
T Consensus 82 ~~~~~----~~--------------~~~~~l~~~----~~~~~~v~l~~~~e~~~~R~-~~~-l~~~-~~~~----~i~~ 132 (175)
T PRK00889 82 SAISP----YR--------------ETREEVRAN----IGNFLEVFVDAPLEVCEQRD-VKG-LYAK-ARAG----EIKH 132 (175)
T ss_pred ecCCC----CH--------------HHHHHHHhh----cCCeEEEEEcCCHHHHHHhC-ccc-HHHH-HHcC----CCCC
Confidence 73210 10 001111111 12345899999999999995 221 0000 0000 0000
Q ss_pred HHHHHHhcCCC--CeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 216 LTTIYRNMNNP--ELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 216 ~~~~y~~~~~~--~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
+......++.+ +.++|+++..++++++++|.+.|....
T Consensus 133 ~~~~~~~~~~p~~ad~~i~~~~~~~~~~~~~i~~~l~~~~ 172 (175)
T PRK00889 133 FTGIDDPYEPPLNPEVECRTDLESLEESVDKVLQKLEELG 172 (175)
T ss_pred CcccCCCCCCCCCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 00111222222 357788877779999999999997643
No 119
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.09 E-value=2e-09 Score=104.18 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=50.4
Q ss_pred CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhc---C-CCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM---N-NPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~---~-~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
.|+.|||+|+++++.+|...+......+..++ ....++. .+. +.. . ..+.++||++..+++++++.|.+.++.
T Consensus 155 a~~K~~l~A~~~~Ra~Rr~~~~~~~~~~~~~~-~~~~Rd~-~d~-R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~ 231 (712)
T PRK09518 155 AEVRILLTAREEVRQARRSGQDRSETPGVVLE-DVAARDE-ADS-KVTSFLSAADGVTTLDNSDLDFDETLDLLIGLVED 231 (712)
T ss_pred CCeEEEEECCHHHHHHHHHHhhhcCCHHHHHH-HHHHHhh-hcc-cccCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHh
Confidence 57899999999999999887754211111111 1111111 111 222 1 224699999999999999999999987
Q ss_pred ccccc
Q psy16563 252 LPMFK 256 (259)
Q Consensus 252 ~~~~~ 256 (259)
...++
T Consensus 232 ~~~~~ 236 (712)
T PRK09518 232 AIEEQ 236 (712)
T ss_pred hhhhh
Confidence 65443
No 120
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.08 E-value=9.6e-10 Score=87.86 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=81.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcc-----ccch--H-----HHHHHHHHHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA-----HDSL--L-----RRAYYSLGNYIAAQDIKQD 127 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~-----~~~~--~-----~~~~~~~~~~~~~~~i~~~ 127 (259)
+|.|.|++.|||||+++.|.+.+..+++... ++.+.+.+.. ..++ . ....+..-.......+...
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~---~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~ 79 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPEPWLHLS---VDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAM 79 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEE---HHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEe---cChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999887755432 2333332211 0010 0 0001010011222333333
Q ss_pred h-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHH
Q psy16563 128 L-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL 206 (259)
Q Consensus 128 l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~ 206 (259)
. .|..||.|-.+...... .+.+...+. ..|-+.|-|.||++++.+|-..|++...-..
T Consensus 80 a~aG~~VIvD~v~~~~~~l-----------------~d~l~~~L~--~~~vl~VgV~Cpleil~~RE~~RgDR~~G~a-- 138 (174)
T PF07931_consen 80 ARAGNNVIVDDVFLGPRWL-----------------QDCLRRLLA--GLPVLFVGVRCPLEILERRERARGDRPIGLA-- 138 (174)
T ss_dssp HHTT-EEEEEE--TTTHHH-----------------HHHHHHHHT--TS-EEEEEEE--HHHHHHHHHHHTSSSTTHH--
T ss_pred HhCCCCEEEecCccCcHHH-----------------HHHHHHHhC--CCceEEEEEECCHHHHHHHHHhcCCcchHHH--
Confidence 3 68999999443321100 111111122 3366789999999999999999986321111
Q ss_pred HHHHHHHHHHHHHHHhcC-C-CCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563 207 KKNAKFRELLTTIYRNMN-N-PELVFVDNSEKSVHESSNDIVELI 249 (259)
Q Consensus 207 e~~~~~~~~~~~~y~~~~-~-~~~~vID~s~~~~eev~~~I~~~l 249 (259)
...+.... . .-.+.|||+..+++|+++.|.+.+
T Consensus 139 ----------~~q~~~Vh~~~~YDleVDTs~~sp~ecA~~I~~~~ 173 (174)
T PF07931_consen 139 ----------AWQAEHVHEGGRYDLEVDTSATSPEECAREILARL 173 (174)
T ss_dssp ----------HHHTTGGGTT---SEEEETTSS-HHHHHHHHHTT-
T ss_pred ----------HHHHhhcccCCCCCEEEECCCCCHHHHHHHHHHHh
Confidence 11122121 1 114899999988999999998765
No 121
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.08 E-value=2.1e-08 Score=78.21 Aligned_cols=173 Identities=20% Similarity=0.261 Sum_probs=85.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh-hcccccCCCCchHHHHHHhcccc-----chHHHHHHHHHH--H-HHHHHHHHHh
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKL-KASLKSTPPSSIMSLREKFDAHD-----SLLRRAYYSLGN--Y-IAAQDIKQDL 128 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~-~~~~~~~p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~-~~~~~i~~~l 128 (259)
+++++++|.+|+||||+++.+.+.+ ....+.. ++-+.+.-.+.. ...+......|+ | ..++.+...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNy----G~~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~- 78 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNY----GDLMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEM- 78 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeH----hHHHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHh-
Confidence 4679999999999999999999988 3222211 111111111100 000000001111 1 122223221
Q ss_pred CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCch---HHHH
Q psy16563 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL---EENE 205 (259)
Q Consensus 129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~---~~~~ 205 (259)
+.-+|+|-.-.- . .+.|+-..+| .|.-....||.++.|.+||+++..|-.+-....+ ....
T Consensus 79 -~~~iivDtH~~I----k----TP~GylpgLP-------~~Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~ 142 (189)
T COG2019 79 -ALEIIVDTHATI----K----TPAGYLPGLP-------SWVLEELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEE 142 (189)
T ss_pred -hhceEEecccee----c----CCCccCCCCc-------HHHHHhcCCCEEEEEeCCHHHHHHHHhcccccccccccHHH
Confidence 122777732110 0 1222212222 2333446699999999999999888644311111 1111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 206 LKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 206 ~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
.....+..+-..-+|.-.....+.+|.+....+++.+.+|..+|..
T Consensus 143 i~eHqe~nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~~ 188 (189)
T COG2019 143 IREHQEMNRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELLDR 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 1111112122222233333556777777765699999999998864
No 122
>PRK06696 uridine kinase; Validated
Probab=99.08 E-value=1.3e-09 Score=91.05 Aligned_cols=29 Identities=17% Similarity=0.400 Sum_probs=25.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+...+|+|.|++||||||+|+.|++.++.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34667999999999999999999999953
No 123
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.07 E-value=1.8e-09 Score=93.18 Aligned_cols=75 Identities=20% Similarity=0.195 Sum_probs=44.1
Q ss_pred CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
...+|||+++++++.+|+..+....+...... ..+.+...++.+.++.....++||+++.+++++.++|.+.+..
T Consensus 86 ~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~-l~e~I~~eR~~l~pl~~~ADivIDTs~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 86 DVRVLFLDASDEVLIRRYSETRRRHPLSGDGS-LLEGIELERELLAPLRERADLVIDTSELSVHQLRERIRERFGG 160 (288)
T ss_pred cEEEEEEECCHHHHHHHHhhcccCCCccCCcc-HHHHHHHHHhhhhhHHHhCCEEEECCCCCHHHHHHHHHHHHhc
Confidence 34579999999999999975321111000000 1111112222222222223489999998899999999998854
No 124
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.05 E-value=1e-09 Score=88.34 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
+|+|.||+||||||+++.|++.++..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~ 28 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNL 28 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccc
Confidence 49999999999999999999976543
No 125
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.02 E-value=2.7e-09 Score=84.86 Aligned_cols=156 Identities=19% Similarity=0.227 Sum_probs=85.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhccc----ccC---CCC---------chHHHHHHhccccchHHHHHHHHHHHHH-H
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASL----KST---PPS---------SIMSLREKFDAHDSLLRRAYYSLGNYIA-A 121 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~----~~~---p~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 121 (259)
.+|+|.||+|+||||+++.|-+..+..+ ... |+. +-++|.+++..+.. +..+.+.-+.|.. .
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~f-LE~a~~~gnyYGT~~ 83 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEF-LEWAEYHGNYYGTSR 83 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCc-EEEEEEcCCcccCcH
Confidence 3599999999999999999999874321 112 221 11345444444421 1111111111221 2
Q ss_pred HHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecC-HHHHHHHHhhccCC
Q psy16563 122 QDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVS-EAIRLQRLSRRKNF 199 (259)
Q Consensus 122 ~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~-~ev~~~Rl~~R~~~ 199 (259)
..++..+ .|..|++|-=|. .+. ++.. ...+-..||+.+| .+++.+|+.+||..
T Consensus 84 ~~ve~~~~~G~~vildId~q------Ga~---------------qvk~----~~p~~v~IFi~pPs~eeL~~RL~~Rgtd 138 (191)
T COG0194 84 EPVEQALAEGKDVILDIDVQ------GAL---------------QVKK----KMPNAVSIFILPPSLEELERRLKGRGTD 138 (191)
T ss_pred HHHHHHHhcCCeEEEEEehH------HHH---------------HHHH----hCCCeEEEEEcCCCHHHHHHHHHccCCC
Confidence 3345544 688899983222 111 1111 1113457887777 58889999999965
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 200 TLEENELKKNAKFRELLTTIYRNMNN---PELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 200 ~~~~~~~e~~~~~~~~~~~~y~~~~~---~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
+.+. ..+++..++.++.. -+ ++|.++ +++...+++..++..
T Consensus 139 s~e~--------I~~Rl~~a~~Ei~~~~~fd-yvivNd--d~e~a~~~l~~ii~a 182 (191)
T COG0194 139 SEEV--------IARRLENAKKEISHADEFD-YVIVND--DLEKALEELKSIILA 182 (191)
T ss_pred CHHH--------HHHHHHHHHHHHHHHHhCC-EEEECc--cHHHHHHHHHHHHHH
Confidence 5332 23445555555421 12 444443 378888888887743
No 126
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.02 E-value=2.4e-09 Score=88.02 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=22.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+|+|.|++||||||+++.|++.++
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 499999999999999999999876
No 127
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.00 E-value=1.1e-09 Score=89.66 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=22.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+|+|.|++||||||+++.|++.++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999883
No 128
>PRK06547 hypothetical protein; Provisional
Probab=98.98 E-value=2.5e-09 Score=85.62 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=27.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
..++|+|.|++||||||+++.|++.++..+++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~ 45 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVH 45 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeec
Confidence 35679999999999999999999998876654
No 129
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.97 E-value=6.9e-10 Score=90.67 Aligned_cols=171 Identities=16% Similarity=0.124 Sum_probs=80.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCC---C----Cch-H--HHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP---P----SSI-M--SLREKFDAH-DSLLRRAYYSLGNYIAAQDIKQDL 128 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p---~----~~~-~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l 128 (259)
+|+|.|++||||||+|+.|+..|+...+..- . ... . .....-... ..+......+.+...+.+.+..+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 6999999999999999999999986543210 0 000 0 011100000 000000000111223445555555
Q ss_pred CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhc-ccccCCCCCEEEEEecCHHHHHHHHhhccCC--chHHHH
Q psy16563 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS-WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF--TLEENE 205 (259)
Q Consensus 129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~--~~~~~~ 205 (259)
+|..+-...|.+++.............++.+.++.+.++. .+. ...|+.|||+++.++++.|...|+-. ....
T Consensus 81 ~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~l~--~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~-- 156 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEELR--DLFDLKIFLDADEDLRLERRIQRDVAERGRSP-- 156 (194)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHCHG--GG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-H--
T ss_pred CCCcccccccccccccceeeeeecCCCCEEEEcccceeeeeeec--ccceeEEEecccHHHHHHHHhhhhccccCCcc--
Confidence 6666666555544321111000001111233344444332 122 23689999999999999998777511 1111
Q ss_pred HHHHHHHHHHHHHHHHhcCC----CCeEEEeCCC
Q psy16563 206 LKKNAKFRELLTTIYRNMNN----PELVFVDNSE 235 (259)
Q Consensus 206 ~e~~~~~~~~~~~~y~~~~~----~~~~vID~s~ 235 (259)
+............|..+-. ...++|+...
T Consensus 157 -~~~~~~~~~~~~~~~~~I~p~~~~ADivi~~~~ 189 (194)
T PF00485_consen 157 -EEVIAQYERVRPGYERYIEPQKERADIVIPSGP 189 (194)
T ss_dssp -HHHHHHHHTHHHHHHHCTGGGGGG-SEEEESCT
T ss_pred -eeEEEEeecCChhhhhheeccccccEEEECCCC
Confidence 1122233355556665522 2357777654
No 130
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.93 E-value=4.3e-08 Score=95.70 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=46.3
Q ss_pred CCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHH-HHHHH-HHHHHHhc---C-CCCeEEEeCCCCCHhhHHHHHHH
Q psy16563 174 MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNA-KFREL-LTTIYRNM---N-NPELVFVDNSEKSVHESSNDIVE 247 (259)
Q Consensus 174 ~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~-~~~~~-~~~~y~~~---~-~~~~~vID~s~~~~eev~~~I~~ 247 (259)
+-.++.|||+|+++++.+|-....... ..++.-. +..+| ..+..+.. . .++.++||++..+++++++.|.+
T Consensus 205 PdA~~KifL~As~e~RA~RR~~e~~~~---~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDts~l~ieevv~~i~~ 281 (863)
T PRK12269 205 VDADLKCYLDASIEARVARRWAQGTSR---LSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTSCLTIEEVCERIAR 281 (863)
T ss_pred CCCCEEEEEECCHHHHHHHHHHhhhcc---CCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEECCCCCHHHHHHHHHH
Confidence 335789999999999988865432211 1111111 11111 11111121 1 23469999999999999999999
Q ss_pred HHhcc
Q psy16563 248 LIHNL 252 (259)
Q Consensus 248 ~l~~~ 252 (259)
.+...
T Consensus 282 ~~~~~ 286 (863)
T PRK12269 282 EAHRR 286 (863)
T ss_pred HHHhc
Confidence 99775
No 131
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.92 E-value=2.4e-08 Score=81.66 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=25.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
.+|+|.|++||||||+++.|++.++..++
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 46999999999999999999999887543
No 132
>PRK07261 topology modulation protein; Provisional
Probab=98.92 E-value=4.8e-09 Score=84.02 Aligned_cols=99 Identities=20% Similarity=0.283 Sum_probs=59.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEEcCCc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFW 139 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~Dr~~ 139 (259)
.|+|.|++||||||+++.|++.++.+++........ ..+...+ .......+...+.+..+|+|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~---~~~~~~~-----------~~~~~~~~~~~~~~~~wIidg~~ 67 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ---PNWQERD-----------DDDMIADISNFLLKHDWIIDGNY 67 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec---cccccCC-----------HHHHHHHHHHHHhCCCEEEcCcc
Confidence 499999999999999999999988776543211100 0000000 01222333444454458888653
Q ss_pred cchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563 140 HSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197 (259)
Q Consensus 140 ~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~ 197 (259)
.... + ... +...|.+|||++|.++|+.|+.+|.
T Consensus 68 ~~~~-~------------------~~~------l~~ad~vI~Ld~p~~~~~~R~lkR~ 100 (171)
T PRK07261 68 SWCL-Y------------------EER------MQEADQIIFLNFSRFNCLYRAFKRY 100 (171)
T ss_pred hhhh-H------------------HHH------HHHCCEEEEEcCCHHHHHHHHHHHH
Confidence 3210 0 000 1125889999999999999998774
No 133
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.91 E-value=2.4e-09 Score=83.88 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=59.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHH---HHHHh--CCCcE
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQD---IKQDL--QKQPV 133 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~l--~~~~v 133 (259)
.+|.|+|.+||||||+|+.|.++|.......--.+++.+|..+..+..+.. .++....++ +...+ .|.+|
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~-----~dR~e~~rr~~~~A~ll~~~G~iv 77 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSK-----EDREENIRRIAEVAKLLADQGIIV 77 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSH-----HHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCH-----HHHHHHHHHHHHHHHHHHhCCCeE
Confidence 469999999999999999999999765432211234566655554432211 111121222 22222 68888
Q ss_pred EEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCC--CCEEEEEecCHHHHHHHH
Q psy16563 134 VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK--PDLVIYLTVSEAIRLQRL 193 (259)
Q Consensus 134 i~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~--pdlvI~L~a~~ev~~~Rl 193 (259)
|+.-.. .| .....+.+.... .-+.|||+||.++|.+|=
T Consensus 78 Iva~is----p~------------------~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 78 IVAFIS----PY------------------REDREWARELIPNERFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp EEE--------S------------------HHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred EEeecc----Cc------------------hHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence 887211 11 111111111111 246899999999999993
No 134
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.91 E-value=5e-09 Score=79.16 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~ 82 (259)
|+|.|++||||||+++.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997
No 135
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.88 E-value=1.7e-08 Score=96.56 Aligned_cols=167 Identities=14% Similarity=0.139 Sum_probs=85.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-Hh-CCCcEEE
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQ-DL-QKQPVVM 135 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~l-~~~~vi~ 135 (259)
..+|+++|++||||||+|+.|++++........--..+.++..+.....+....... .+.....+.. .+ .|..||+
T Consensus 460 ~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~--~~~~l~~~a~~~~~~G~~Viv 537 (632)
T PRK05506 460 PATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVE--NIRRVAEVARLMADAGLIVLV 537 (632)
T ss_pred cEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHH--HHHHHHHHHHHHHhCCCEEEE
Confidence 456999999999999999999999864211100011245555443221111110000 0011111111 22 5788888
Q ss_pred cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Q psy16563 136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL 215 (259)
Q Consensus 136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~ 215 (259)
|-..... ..++.+...... .+-.+|||++|.+++.+|. .|+-.... ..+....+ ..
T Consensus 538 da~~~~~------------------~~R~~~r~l~~~--~~~~~v~L~~~~e~~~~R~-~r~L~~~~--~~~~l~~l-~~ 593 (632)
T PRK05506 538 SFISPFR------------------EERELARALHGE--GEFVEVFVDTPLEVCEARD-PKGLYAKA--RAGEIKNF-TG 593 (632)
T ss_pred ECCCCCH------------------HHHHHHHHhccc--CCeEEEEECCCHHHHHhhC-Ccchhhhc--cccccccc-cc
Confidence 8321110 011111111111 1446899999999999994 23311000 00000111 11
Q ss_pred HHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 216 LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 216 ~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
.+..|.+. ..+.++||+++.++++++++|.+.|..
T Consensus 594 ~r~~y~~P-~~a~~~Id~~~~s~~e~v~~Ii~~l~~ 628 (632)
T PRK05506 594 IDSPYEAP-ENPELRLDTTGRSPEELAEQVLELLRR 628 (632)
T ss_pred cccCCCCC-CCCeEEEeCCCCCHHHHHHHHHHHHHH
Confidence 22223321 124689999877799999999999875
No 136
>PRK05439 pantothenate kinase; Provisional
Probab=98.87 E-value=5.9e-09 Score=90.60 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=26.2
Q ss_pred cCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
..+...+|+|.|++||||||+|+.|++.++.
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3345667999999999999999999998763
No 137
>COG0645 Predicted kinase [General function prediction only]
Probab=98.86 E-value=8.2e-08 Score=75.31 Aligned_cols=115 Identities=20% Similarity=0.176 Sum_probs=70.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcc------cc-c-hHHHHHHHHHHHHHHHHHHHHh-CC
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA------HD-S-LLRRAYYSLGNYIAAQDIKQDL-QK 130 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~------~~-~-~~~~~~~~~~~~~~~~~i~~~l-~~ 130 (259)
++.+.|.+|+||||+++.|++.++...++. +.+++-+.. .+ + +... .-..-.+.+...-...+ .|
T Consensus 3 l~l~~Gl~GsGKstlA~~l~~~lgA~~lrs-----D~irk~L~g~p~~~r~~~g~ys~~-~~~~vy~~l~~~A~l~l~~G 76 (170)
T COG0645 3 LVLVGGLPGSGKSTLARGLAELLGAIRLRS-----DVIRKRLFGVPEETRGPAGLYSPA-ATAAVYDELLGRAELLLSSG 76 (170)
T ss_pred EEEEecCCCccHhHHHHHHHhhcCceEEeh-----HHHHHHhcCCcccccCCCCCCcHH-HHHHHHHHHHHHHHHHHhCC
Confidence 488999999999999999999999987764 244443222 11 1 1111 00000112222222233 69
Q ss_pred CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC
Q psy16563 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN 198 (259)
Q Consensus 131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~ 198 (259)
..||+|..+....- .............+...|++.+|++++.+|+.+|..
T Consensus 77 ~~VVlDa~~~r~~~------------------R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 77 HSVVLDATFDRPQE------------------RALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred CcEEEecccCCHHH------------------HHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 99999976554321 222222233334466789999999999999999975
No 138
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.83 E-value=4.3e-08 Score=79.39 Aligned_cols=159 Identities=18% Similarity=0.225 Sum_probs=80.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhccc------ccCCCCc------------hHHHHHHhccccchHHHHHHHHHHHH-H
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASL------KSTPPSS------------IMSLREKFDAHDSLLRRAYYSLGNYI-A 120 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~------~~~p~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 120 (259)
+|+|.||+||||+|+++.|.+.....+ ...|+.. -+.+.+.+..+. +.....+.-..|. .
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~-fve~~~~~g~~YGt~ 82 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGL-FLEWGEYSGNYYGTS 82 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCC-eEEEEEEcCcCcccC
Confidence 499999999999999999999863211 1112211 023333332221 0000000000011 1
Q ss_pred HHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEe-cCHHHHHHHHhhccC
Q psy16563 121 AQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLT-VSEAIRLQRLSRRKN 198 (259)
Q Consensus 121 ~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~-a~~ev~~~Rl~~R~~ 198 (259)
...+...+ ++..+|+|-.+. ....+... ...| .+|||. .+.+++.+|+.+|++
T Consensus 83 ~~~i~~~~~~~~~~ild~~~~---------------------~~~~l~~~---~~~~-~vIfi~~~s~~~l~~rl~~R~~ 137 (184)
T smart00072 83 KETIRQVAEQGKHCLLDIDPQ---------------------GVKQLRKA---QLYP-IVIFIAPPSSEELERRLRGRGT 137 (184)
T ss_pred HHHHHHHHHcCCeEEEEECHH---------------------HHHHHHHh---CCCc-EEEEEeCcCHHHHHHHHHhcCC
Confidence 12234433 577888873321 11222211 1112 689998 667789999999986
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 199 FTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 199 ~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
.+.... ...+...+.....+ ..-..+|+++ . +++..+++.++|...
T Consensus 138 ~~~~~i--~~rl~~a~~~~~~~----~~fd~~I~n~-~-l~~~~~~l~~~i~~~ 183 (184)
T smart00072 138 ETAERI--QKRLAAAQKEAQEY----HLFDYVIVND-D-LEDAYEELKEILEAE 183 (184)
T ss_pred CCHHHH--HHHHHHHHHHHhhh----ccCCEEEECc-C-HHHHHHHHHHHHHhc
Confidence 543221 11111111111111 1113666666 3 899999999988653
No 139
>PRK12338 hypothetical protein; Provisional
Probab=98.83 E-value=8.7e-08 Score=83.37 Aligned_cols=168 Identities=11% Similarity=0.130 Sum_probs=85.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHh----------------------ccccc-hH--H---
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKF----------------------DAHDS-LL--R--- 109 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~----------------------~~~~~-~~--~--- 109 (259)
+.+|+|.|++||||||+|+.||+.++..++... +.+++.. ...++ +. .
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~t----D~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i 79 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHLIET----DFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELI 79 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEEccC----hHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHH
Confidence 356999999999999999999999997754211 1111110 00000 00 0
Q ss_pred HHHHHHHHHHH----HHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEec
Q psy16563 110 RAYYSLGNYIA----AQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTV 184 (259)
Q Consensus 110 ~~~~~~~~~~~----~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a 184 (259)
-..|..+.... ...+.... .|..+|.+..+...-.. .. ..... . .+-..++|..
T Consensus 80 ~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i------------------~~-~~~~~-~-~~v~~~vl~~ 138 (319)
T PRK12338 80 CAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLI------------------DI-EQFEE-N-ASIHFFILSA 138 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHH------------------hh-hhhcc-c-CceEEEEEEC
Confidence 01122222222 22333333 57899999654432110 00 00000 0 1223556678
Q ss_pred CHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 185 SEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN-NPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 185 ~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~-~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
+.++..+|...|.....-.........-.+.+++...+.+ ..++.+|+|. +++++++.+.+.|...
T Consensus 139 dee~h~~Rf~~R~~~~~r~~~~l~~f~~Ir~Iq~~l~~~A~e~~VpvI~N~--did~Tv~~ile~I~e~ 205 (319)
T PRK12338 139 DEEVHKERFVKRAMEIKRGGKQLEYFRENRIIHDHLVEQAREHNVPVIKND--DIDCTVKKMLSYIREV 205 (319)
T ss_pred CHHHHHHHHHHhhhccCCchhhhhChHHHHHHHHHHHHhHhhCCCceeCCC--cHHHHHHHHHHHHHhh
Confidence 9999999999976322111111112222233333333332 2234555544 4899999999998765
No 140
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.80 E-value=7.1e-09 Score=86.38 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=22.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+|+|.|++||||||+++.|+..+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999999985
No 141
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.79 E-value=4.8e-08 Score=76.44 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=22.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+|+|.|++||||||+++.|++.+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999984
No 142
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=98.79 E-value=5.1e-08 Score=77.28 Aligned_cols=149 Identities=19% Similarity=0.207 Sum_probs=63.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccc--hHH-HHHHHHHHHHHHHHHH---HHhCCCcEE
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDS--LLR-RAYYSLGNYIAAQDIK---QDLQKQPVV 134 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~i~---~~l~~~~vi 134 (259)
|+|+|++|+||||+++.|++. |..++.++.. .+.+....... +.. ......+...+...++ .......+|
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi 77 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAR---EIIEEGGRRDRDTLPWEDDLLAFQEGILEQQLEAEASAKSSDVVI 77 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTH---HHHHHSSSS-TTSS-TT-THHHHHHH--HHHHHHHHHHH-SSEEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHH---HHHHHhccccchhhhhcchHHHHHHHHHHHHHHHHHhhcCCCcEE
Confidence 899999999999999999998 7666644321 11111111100 110 0111222222222222 223578999
Q ss_pred EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q psy16563 135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214 (259)
Q Consensus 135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~ 214 (259)
+||.+.++.+|.... ++.. ++. +..... ....|++|+|..++...... .|.. + .+....+.+
T Consensus 78 ~Dr~~~d~~aY~~~~--~~~~----~~~---l~~~~~-~~~yd~v~~l~~~~~~~~D~--~R~~-~-----~~~r~~~~~ 139 (163)
T PF13521_consen 78 CDRGPLDTLAYSEFY--FGDY----PEE---LEREAR-LSRYDLVFLLPPDPPWEQDG--VRPE-D-----PEERERIDE 139 (163)
T ss_dssp ESS-HHHHHHHHHHH--HS-------HH---HHHHHH-HS--SEEEEEE------------------------SHHHHHH
T ss_pred EeCChHHHHHHHHHh--cCcc----hHH---HHHHHH-hCCCCEEEEeCCccccCCCC--CCCC-C-----HHHHHHHHH
Confidence 999999999996432 1111 111 221111 23478888888766331111 1211 1 111344556
Q ss_pred HHHHHHHhcCCCCeEEEe
Q psy16563 215 LLTTIYRNMNNPELVFVD 232 (259)
Q Consensus 215 ~~~~~y~~~~~~~~~vID 232 (259)
.+.+.|... ..+++.|+
T Consensus 140 ~~~~~l~~~-~~~~~~v~ 156 (163)
T PF13521_consen 140 LLKELLERH-GIPYIIVP 156 (163)
T ss_dssp HHHHHHHGG-G---EEEE
T ss_pred HHHHHHHHC-CCeEEEeC
Confidence 666666665 33567775
No 143
>PLN02348 phosphoribulokinase
Probab=98.78 E-value=2.4e-08 Score=88.79 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=72.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccC----C--------C---CchHHH-------HHHhccccchHHHHHH
Q psy16563 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKST----P--------P---SSIMSL-------REKFDAHDSLLRRAYY 113 (259)
Q Consensus 56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~----p--------~---~~~~~~-------~~~~~~~~~~~~~~~~ 113 (259)
+...+|+|.|++||||||+++.|++.|+...... | . -+.+.+ +..-... .+...
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t-~ldP~--- 122 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVT-ALDPR--- 122 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCc-cCCcc---
Confidence 3456799999999999999999999998532110 0 0 000100 1100000 00000
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcc-cccCCCCCEEEEEecCHHHHHHH
Q psy16563 114 SLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW-PKDLMKPDLVIYLTVSEAIRLQR 192 (259)
Q Consensus 114 ~~~~~~~~~~i~~~l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~pdlvI~L~a~~ev~~~R 192 (259)
+.+...+.+.+..+.+|..+-...|-+.+-.+.....+. ..++.+.++.+.++.. .. ...|+.|||++++++++.|
T Consensus 123 a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~-p~~VVIVEGlh~L~~e~lr--~l~D~~IyVd~~~dvrl~R 199 (395)
T PLN02348 123 ANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIE-PPKILVIEGLHPMYDERVR--DLLDFSIYLDISDDVKFAW 199 (395)
T ss_pred cccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcC-CCcEEEEechhhccCcccc--ccCcEEEEEECCHHHHHHH
Confidence 011223455666666777777777766543222111111 1112334444444421 22 3468999999999999777
Q ss_pred Hhhcc
Q psy16563 193 LSRRK 197 (259)
Q Consensus 193 l~~R~ 197 (259)
...|.
T Consensus 200 RI~RD 204 (395)
T PLN02348 200 KIQRD 204 (395)
T ss_pred HHHhh
Confidence 66554
No 144
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.75 E-value=4.2e-08 Score=84.71 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+.+|+|.|++||||||+++.|+..+.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356799999999999999999988775
No 145
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.74 E-value=1.2e-08 Score=82.72 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=22.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+|+|.|++||||||+|+.|++.++
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999984
No 146
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.72 E-value=4.4e-08 Score=86.22 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+++|+|++||||||+++.|++++.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999987
No 147
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.71 E-value=1.9e-08 Score=81.10 Aligned_cols=134 Identities=13% Similarity=0.092 Sum_probs=67.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHH----HhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLRE----KFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVM 135 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~ 135 (259)
+|+|.|++||||||+++.|++.++........-+.+.+.. .-.....+... ...+...+.+.+..+.++..+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~--~~~d~~~l~~~l~~l~~~~~~~~ 78 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFE--SILDLDLLNKNLHDLLNGKEVEL 78 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCC--ccccHHHHHHHHHHHHCCCeeec
Confidence 4899999999999999999999863211000000011000 00000000000 00122234445555455666655
Q ss_pred cCCccchhhhhhh-hhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHH-HHHHHhhcc
Q psy16563 136 DRFWHSTSAYGMA-NELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAI-RLQRLSRRK 197 (259)
Q Consensus 136 Dr~~~s~~~~~~~-~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev-~~~Rl~~R~ 197 (259)
..|-+.+...... .......++.+.++...++..+... .|+.||+++|.++ ++.|...|+
T Consensus 79 p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~--~d~~I~vd~~~~~~rl~rri~RD 140 (179)
T cd02028 79 PIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSL--LDIRVAVSGGVHLNRLLRRVVRD 140 (179)
T ss_pred ccceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhh--cCEEEEEeCCccHHHHHHHHHHh
Confidence 5555544322110 0000111234455555555444333 7999999999998 776666554
No 148
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.68 E-value=7e-08 Score=80.89 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
...+|+|.|++||||||+++.|+..+...
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 35679999999999999999999988753
No 149
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.67 E-value=7.3e-08 Score=89.55 Aligned_cols=163 Identities=14% Similarity=0.049 Sum_probs=79.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcc-cccCCCCc-hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS-LKSTPPSS-IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVM 135 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~-~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~ 135 (259)
..+|+|.|++||||||+++.|+..+... .+...+.. .........+.+. +.+...+.+.+.++.+|..+-.
T Consensus 65 riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~nfD~P~-------a~D~d~L~enL~~Lr~GksV~i 137 (656)
T PLN02318 65 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPR-------LTDYDTLLDNIHDLKAGKSVQV 137 (656)
T ss_pred eEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCccCCChh-------hcchhHHHHHHHHHhCCCceec
Confidence 4579999999999999999999987432 22211110 0000000011111 1122233445656556766666
Q ss_pred cCCccchhhhhhh-hhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc----CCchHHHHHHHHH
Q psy16563 136 DRFWHSTSAYGMA-NELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK----NFTLEENELKKNA 210 (259)
Q Consensus 136 Dr~~~s~~~~~~~-~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~----~~~~~~~~~e~~~ 210 (259)
..|-+.+-..... ...-....+.+.++.+.++..+. ...|+.||+++|.+.++.|...|+ +.+.+. . ..
T Consensus 138 PiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~~Lr--~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~Es-V---i~ 211 (656)
T PLN02318 138 PIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSEKLR--PLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEE-I---IH 211 (656)
T ss_pred CccccccCcccCCceeecCCCcEEEEechhhccHhHH--hhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHH-H---HH
Confidence 6555543211100 00000111234455555544333 336899999988666655543333 112221 1 22
Q ss_pred HHHHHHHHHHHhcCCC----CeEEEeC
Q psy16563 211 KFRELLTTIYRNMNNP----ELVFVDN 233 (259)
Q Consensus 211 ~~~~~~~~~y~~~~~~----~~~vID~ 233 (259)
.+.+.+...|..+..| ..++|++
T Consensus 212 q~~~~VkP~y~~FIeP~kk~ADIII~n 238 (656)
T PLN02318 212 QISETVYPMYKAFIEPDLQTAHIKIVN 238 (656)
T ss_pred HHHHhhcchHHHHhCcchhcceEEEec
Confidence 3445555666655333 2455644
No 150
>PRK07429 phosphoribulokinase; Provisional
Probab=98.65 E-value=2.7e-07 Score=81.16 Aligned_cols=135 Identities=19% Similarity=0.241 Sum_probs=65.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhhcc---cccCCCCc-h-HHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy16563 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKAS---LKSTPPSS-I-MSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130 (259)
Q Consensus 56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~~---~~~~p~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 130 (259)
++..+|+|.|++||||||+++.|++.++.. .+...+.. . ...++.+.... +.... .+.....+.+..+.++
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~-l~p~~---~~~d~l~~~l~~L~~g 81 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITA-LDPRA---NNLDIMYEHLKALKTG 81 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcc-cCccc---hHHHHHHHHHHHHHCC
Confidence 345679999999999999999999998733 22221110 0 11122221110 00000 0011233344444456
Q ss_pred CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhc-ccccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS-WPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197 (259)
Q Consensus 131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~ 197 (259)
..+....|-.++..+.....+. ..+..+.++...++. ... ...|++|||++|.+++.+|...|.
T Consensus 82 ~~I~~P~yd~~~g~~~~~~~i~-p~~iVIvEG~~~l~~~~lr--~~~D~~I~Vda~~evr~~Rri~Rd 146 (327)
T PRK07429 82 QPILKPIYNHETGTFDPPEYIE-PNKIVVVEGLHPLYDERVR--ELYDFKVYLDPPEEVKIAWKIKRD 146 (327)
T ss_pred CceecceeecCCCCcCCcEecC-CCcEEEEechhhcCcHhHH--hhCCEEEEEECCHHHHHHHHHHHH
Confidence 6555554444432211000000 001122233322221 111 236899999999999986655443
No 151
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.64 E-value=1.2e-07 Score=81.60 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+|+|.|++||||||+++.|+..++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~ 25 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGS 25 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4899999999999999999998753
No 152
>PHA03135 thymidine kinase; Provisional
Probab=98.64 E-value=4.4e-07 Score=79.05 Aligned_cols=153 Identities=15% Similarity=0.167 Sum_probs=76.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhc----ccccCCCCchHHHHHHhcc-------------ccchH----HH------
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKA----SLKSTPPSSIMSLREKFDA-------------HDSLL----RR------ 110 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~----~~~~~p~~~~~~~~~~~~~-------------~~~~~----~~------ 110 (259)
...|.|+|+.|+||||+++.|++.... .++.|| ...++.+|.+ .+++. ..
T Consensus 10 ~~rIYlDG~~GvGKTT~~~~l~~~~~~~~~vl~vpEP---M~YWr~~f~d~i~~Iy~tq~r~~~G~ls~~~as~~~~~~Q 86 (343)
T PHA03135 10 LIRVYLDGPFGIGKTSMLNEMPDHSPDGVPVLKVFEP---MKYWRCYFTDLVVAVNDTPERRRRGELSLFQSSMIVAALQ 86 (343)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHhcCCCCceEEecCc---HHHHHHHHHHHHHHHHHHHhhhhcCCcchhhccHHHHHHH
Confidence 445999999999999999999986322 223343 3444444421 01110 01
Q ss_pred HHHHHHHHHHHHHHHHHh---------CCCcEEEcCCccchh-hhhhhhhhccccCCCCCcchhhhhc-ccccCCCCCEE
Q psy16563 111 AYYSLGNYIAAQDIKQDL---------QKQPVVMDRFWHSTS-AYGMANELVKNSDLKLPDEDDDIYS-WPKDLMKPDLV 179 (259)
Q Consensus 111 ~~~~~~~~~~~~~i~~~l---------~~~~vi~Dr~~~s~~-~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~pdlv 179 (259)
..|+.......+.+.+.. ....+|+||.+.+.. .|-.++...|.+ .+. .+-.++. .....+-.+ +
T Consensus 87 ~kfatP~~~~~~~l~~~~~~~~~~~~~p~~~lIfDRHPlSA~vcFPlaryl~G~l--s~~-~l~sl~~~lp~~~pG~n-i 162 (343)
T PHA03135 87 AKFADPYLVFHERLSSKCHGKIGTRGNPSLILILDRHPVSATVCFPIARHLLGDC--SLE-MLISSIIRLPLEPPGCN-L 162 (343)
T ss_pred HHhcchHHHHHHHHHHHhcccCCCCCCCCceEEEecCCCCCceeeehhhcccCCC--CHH-HHHHHHHhCCcCCCCCe-E
Confidence 111111122223333321 125789999988753 343444322222 111 1112221 122112223 4
Q ss_pred EEEec-CHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHh
Q psy16563 180 IYLTV-SEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRN 222 (259)
Q Consensus 180 I~L~a-~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~ 222 (259)
|+... +++++.+|+.+|++..+.. ...++..++..|.-
T Consensus 163 Vl~~L~~~~E~~rRl~~R~R~gE~~-----d~~yL~aL~n~Y~~ 201 (343)
T PHA03135 163 VITILPDEKEHVNRLSSRNRPGETT-----DRNMLRALNAVYSS 201 (343)
T ss_pred EEEECCCHHHHHHHHHHcCCCcccc-----CHHHHHHHHHHHHH
Confidence 44555 6899999999998653221 23455555555543
No 153
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=98.61 E-value=8e-07 Score=74.06 Aligned_cols=157 Identities=18% Similarity=0.137 Sum_probs=89.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCC---CchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh--CCCc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPP---SSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL--QKQP 132 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l--~~~~ 132 (259)
..+|+|+|.+||||...++.|.+++...++..-+ ++-.+.+ +-..-++...+ .|.+
T Consensus 31 ~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~eE~~-------------------~p~lwRfw~~lP~~G~i 91 (230)
T TIGR03707 31 RVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSDRERT-------------------QWYFQRYVQHLPAAGEI 91 (230)
T ss_pred CEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHHc-------------------ChHHHHHHHhCCCCCeE
Confidence 5569999999999999999999999987653211 1111100 01112223334 5999
Q ss_pred EEEcCCccchhhhhhhhhhccccCCCCCcchh---hhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCc-h----HHH
Q psy16563 133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDD---DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFT-L----EEN 204 (259)
Q Consensus 133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~---~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~-~----~~~ 204 (259)
.|+||.|+......- ..|...+..+...+. .+.+.+......=+.+||.+|.+++.+|+.+|-... . ...
T Consensus 92 ~IF~rSwY~~~lv~r--v~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~Wk~~~~ 169 (230)
T TIGR03707 92 VLFDRSWYNRAGVER--VMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQWKLSPM 169 (230)
T ss_pred EEEeCchhhhHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccCCHH
Confidence 999999997643221 101100000111111 222223333445578999999999999999886321 0 111
Q ss_pred HHHHHHHHHHHHHHHHHhc------CCCCeEEEeCCCC
Q psy16563 205 ELKKNAKFRELLTTIYRNM------NNPELVFVDNSEK 236 (259)
Q Consensus 205 ~~e~~~~~~~~~~~~y~~~------~~~~~~vID~s~~ 236 (259)
.+. ..........+|+++ ...||++|+++..
T Consensus 170 D~~-~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk 206 (230)
T TIGR03707 170 DLA-SLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDDK 206 (230)
T ss_pred HHH-HHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCH
Confidence 111 233344455555544 2357999999986
No 154
>PHA03134 thymidine kinase; Provisional
Probab=98.60 E-value=1.5e-06 Score=75.72 Aligned_cols=152 Identities=20% Similarity=0.258 Sum_probs=81.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhh--cc--cccCCCCchHHHHHHhcc--------------ccchHH--H--HHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLK--AS--LKSTPPSSIMSLREKFDA--------------HDSLLR--R--AYYSL 115 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~--~~--~~~~p~~~~~~~~~~~~~--------------~~~~~~--~--~~~~~ 115 (259)
...|.|+|+-|.||||.++.|+..-. .. ++.|| ...++.+|.. .+++.. . .....
T Consensus 13 ~~rvYlDG~~GvGKTT~~~~l~~~~~~~~~vl~~pEP---M~YWr~~f~~d~i~~Iy~~q~r~~~G~~s~~~aa~~~a~~ 89 (340)
T PHA03134 13 IVRIYLDGAYGIGKSTTGRVMASAASGGGPTLYFPEP---MAYWRTLFETDVVSGIYDAQNRKQQGSLAAEDAAGITAHY 89 (340)
T ss_pred EEEEEEeCCCcCCHHHHHHHHHHhccCCCceEEecCc---HHHHHHHhhhhHHHHHHHHHhHHhccCcchhHHHHHHHHH
Confidence 44599999999999999999987422 22 23343 3344444421 111110 1 11112
Q ss_pred HH------HHHHHHHHHHhC----------CCcEEEcCCccchh-hhhhhhhhccccCCCCCcchhhhhcccccCC--CC
Q psy16563 116 GN------YIAAQDIKQDLQ----------KQPVVMDRFWHSTS-AYGMANELVKNSDLKLPDEDDDIYSWPKDLM--KP 176 (259)
Q Consensus 116 ~~------~~~~~~i~~~l~----------~~~vi~Dr~~~s~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~--~p 176 (259)
|. ......+.+.+. ...+|+||...+.. .|-.++...|.+ . ...+......++ .|
T Consensus 90 Q~~fatP~~~~~~~~~~~~~~~~~~~~~~pd~~vI~DRHPlsA~vcFP~ar~~~G~l--s----~~~~~~l~~~~p~~~p 163 (340)
T PHA03134 90 QARFATPYLILHDRLSTLFGPPSLARGGRPDVTLVFDRHPVASCVCFPLARYLLGDM--S----ACALLALAATLPREPP 163 (340)
T ss_pred HHHhcChHHHHHHHHHHhcCCCCCCCCCCCCeeeeeccCCCCccccchHHHHhcCCC--C----HHHHHHHHHhCCCCCC
Confidence 21 111222333221 25789999988753 343433322222 1 122222222222 14
Q ss_pred -CEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhc
Q psy16563 177 -DLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM 223 (259)
Q Consensus 177 -dlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~ 223 (259)
|-+|+++.+++++.+|+.+|++..+. . ...++..++..|.-+
T Consensus 164 G~niVl~~l~~~e~~~Rl~~R~R~gE~-i----d~~yL~~l~n~Y~~l 206 (340)
T PHA03134 164 GGNLVVTTLNPDEHLRRLRARARIGEQ-I----DAKLIAALRNVYAML 206 (340)
T ss_pred CCeEEEEeCCHHHHHHHHHHcCCCccc-c----CHHHHHHHHHHHHHH
Confidence 78999999999999999999865322 1 345666666666543
No 155
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.59 E-value=6.6e-07 Score=73.38 Aligned_cols=121 Identities=14% Similarity=0.197 Sum_probs=54.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh-hcccccCCCCch----HHHHHHhcccc-chHHHHHHHHHHHHHHHHHHHHh-CC
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKL-KASLKSTPPSSI----MSLREKFDAHD-SLLRRAYYSLGNYIAAQDIKQDL-QK 130 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~-~~~~~~~p~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l-~~ 130 (259)
+.+|.+.|++||||||++..+...+ +...+...+..+ ..+.++....+ .... .............+..++ ++
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~a~~~~ 93 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASE-LTQKEASRLAEKLIEYAIENR 93 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHH-HHHHHHHHHHHHHHHHHHHCT
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 4458899999999999999999988 222221111111 11111111111 1100 000111122233344444 57
Q ss_pred CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197 (259)
Q Consensus 131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~ 197 (259)
..+++|....+...+ ..+.+.++....--.++++.+|+++.++|+..|-
T Consensus 94 ~nii~E~tl~~~~~~------------------~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~ 142 (199)
T PF06414_consen 94 YNIIFEGTLSNPSKL------------------RKLIREAKAAGYKVELYYVAVPPELSIERVRQRY 142 (199)
T ss_dssp --EEEE--TTSSHHH------------------HHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHH
T ss_pred CCEEEecCCCChhHH------------------HHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHH
Confidence 888998654332111 1111111111222347889999999999998884
No 156
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=4.5e-06 Score=69.50 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 14 LVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 14 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
.++++++....-....|++.+-+...++... .. .+.+|.|-|++|.||||+|..||.+||...+
T Consensus 55 ~~eir~~~~~l~~k~~~e~a~rY~lwR~ir~--------~~--~p~IILIGGasGVGkStIA~ElA~rLgI~~v 118 (299)
T COG2074 55 KDEIREVYQKLLEKGDPEVAKRYLLWRRIRK--------MK--RPLIILIGGASGVGKSTIAGELARRLGIRSV 118 (299)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc--------cC--CCeEEEecCCCCCChhHHHHHHHHHcCCcee
Confidence 3444444444344455555544443433211 12 2445888899999999999999999998754
No 157
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.56 E-value=1.4e-06 Score=79.20 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=26.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASL 86 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~ 86 (259)
.+.+|++.|++||||||++..||.+++...
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ 283 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITR 283 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 356799999999999999999999999763
No 158
>PLN02772 guanylate kinase
Probab=98.55 E-value=9.8e-07 Score=78.63 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++|+|.||+|+||+|+++.|.+.+.
T Consensus 136 k~iVlsGPSGvGKsTL~~~L~~~~p 160 (398)
T PLN02772 136 KPIVISGPSGVGKGTLISMLMKEFP 160 (398)
T ss_pred cEEEEECCCCCCHHHHHHHHhhhcc
Confidence 4699999999999999999988754
No 159
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.55 E-value=3.9e-07 Score=84.62 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=67.7
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcE
Q psy16563 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPV 133 (259)
Q Consensus 55 ~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~v 133 (259)
.....+|++.|++||||||+++.++...+..+++. +.+. . ........+.++ .|..|
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~-----D~lg----------~-------~~~~~~~a~~~L~~G~sV 423 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNA-----DTLG----------S-------TQNCLTACERALDQGKRC 423 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECc-----HHHH----------H-------HHHHHHHHHHHHhCCCcE
Confidence 34556899999999999999999999877666643 1111 0 011122334444 68899
Q ss_pred EEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC
Q psy16563 134 VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN 198 (259)
Q Consensus 134 i~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~ 198 (259)
|+|....... .+..+...++....+-..||+++|.+++.+|+..|..
T Consensus 424 VIDaTn~~~~------------------~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 424 AIDNTNPDAA------------------SRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred EEECCCCCHH------------------HHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 9996554321 1122222333334466789999999999999999864
No 160
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=98.55 E-value=7.7e-07 Score=81.79 Aligned_cols=173 Identities=14% Similarity=0.103 Sum_probs=95.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCC---CchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh--CC
Q psy16563 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPP---SSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL--QK 130 (259)
Q Consensus 56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l--~~ 130 (259)
+...+|+|+|.+||||+++++.|.+.+...++..-+ ++-.+.. +-..-++...+ .|
T Consensus 38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE~~-------------------~~flwRfw~~lP~~G 98 (493)
T TIGR03708 38 GFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEERE-------------------RPPMWRFWRRLPPKG 98 (493)
T ss_pred CCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHHhc-------------------CcHHHHHHHhCCCCC
Confidence 345679999999999999999999999887653211 1111100 01112223334 59
Q ss_pred CcEEEcCCccchhhhhhhhhhccccCCCCCcchh---hhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-ch----H
Q psy16563 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD---DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TL----E 202 (259)
Q Consensus 131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~---~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~----~ 202 (259)
.++|+||+|+......-. .|...+..+...+. .+...+......=+.+||.+|.+++.+|+.+|-.. .. .
T Consensus 99 ~I~IFdRSWY~~vlverv--~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~WK~s 176 (493)
T TIGR03708 99 KIGIFFGSWYTRPLIERL--EGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETRWRVT 176 (493)
T ss_pred eEEEEcCcccchhhHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccccCCC
Confidence 999999999976433210 01100000001111 11222233333446899999999999999988631 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhc------CCCCeEEEeCCCCC--HhhHHHHHHHHHh
Q psy16563 203 ENELKKNAKFRELLTTIYRNM------NNPELVFVDNSEKS--VHESSNDIVELIH 250 (259)
Q Consensus 203 ~~~~e~~~~~~~~~~~~y~~~------~~~~~~vID~s~~~--~eev~~~I~~~l~ 250 (259)
..++. ..+.......+|+++ ...||++|+++... --.+++.|.+.|.
T Consensus 177 ~~D~~-~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~addK~~arl~v~~~il~~L~ 231 (493)
T TIGR03708 177 PEDWK-QLKVYDRYRKLAERMLRYTSTPYAPWTVVEGEDDRYRSLTVGRTLLAAIR 231 (493)
T ss_pred HHHHH-HHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 11111 233444455555544 23579999999841 2234445555444
No 161
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.55 E-value=9.2e-08 Score=80.97 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=23.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
+|+|.|.+||||||+++.|++.++..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 49999999999999999999988743
No 162
>KOG3062|consensus
Probab=98.53 E-value=1.3e-06 Score=71.45 Aligned_cols=142 Identities=18% Similarity=0.190 Sum_probs=79.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH-HHHHHHHHHHHHHHHHHH-hCCCcEEEc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR-RAYYSLGNYIAAQDIKQD-LQKQPVVMD 136 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~-l~~~~vi~D 136 (259)
|+|+|+|.+.|||||.|+.|++.|......-...-.+.-.--++++..+.. ..--++ +-.+...+... .++..||+|
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~~~ns~y~~s~~EK~l-Rg~L~S~v~R~Lsk~~iVI~D 80 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGIEKNSNYGDSQAEKAL-RGKLRSAVDRSLSKGDIVIVD 80 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcCCCCcccccccHHHHHH-HHHHHHHHHhhcccCcEEEEe
Confidence 679999999999999999999998765421000000000001122111100 000011 11222233333 368999999
Q ss_pred CCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHH
Q psy16563 137 RFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL 216 (259)
Q Consensus 137 r~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~ 216 (259)
... | -+|+ .++||+..+......++|+..||+|.+++--..|..... .. . ..+.++.+
T Consensus 81 slN-----y------IKGf-------RYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~e-~g-y--~~e~le~L 138 (281)
T KOG3062|consen 81 SLN-----Y------IKGF-------RYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDPGE-DG-Y--DDELLEAL 138 (281)
T ss_pred ccc-----c------cccc-------eeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCCCC-CC-C--CHHHHHHH
Confidence 421 1 2222 567777776666667899999999999999877753321 11 0 23355556
Q ss_pred HHHHHhc
Q psy16563 217 TTIYRNM 223 (259)
Q Consensus 217 ~~~y~~~ 223 (259)
-..|++-
T Consensus 139 ~~RyEeP 145 (281)
T KOG3062|consen 139 VQRYEEP 145 (281)
T ss_pred HHHhhCC
Confidence 6667653
No 163
>PHA03138 thymidine kinase; Provisional
Probab=98.52 E-value=3.2e-06 Score=73.71 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
...|.|+|+.|+||||.++.+.+.+.
T Consensus 12 ~~riYleG~~GvGKTT~~~~~l~~~~ 37 (340)
T PHA03138 12 ILRIYLDGAFGIGKTTAAEAFLHGFA 37 (340)
T ss_pred EEEEEEECCCCcCHHhHHHHHHHhhh
Confidence 34599999999999999997776544
No 164
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.48 E-value=3.1e-06 Score=68.42 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
+|+|.||+||||||+++.|.+.++..
T Consensus 4 ~ivl~Gpsg~GK~~l~~~L~~~~~~~ 29 (183)
T PF00625_consen 4 PIVLVGPSGSGKSTLAKRLIQEFPDK 29 (183)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHSTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcccc
Confidence 49999999999999999999987643
No 165
>PRK15453 phosphoribulokinase; Provisional
Probab=98.47 E-value=1.8e-07 Score=79.77 Aligned_cols=28 Identities=25% Similarity=0.513 Sum_probs=25.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+.++|+|.|.+||||||+++.|++.++.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999998864
No 166
>COG4639 Predicted kinase [General function prediction only]
Probab=98.47 E-value=6.9e-06 Score=63.57 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=65.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccc--hHHHHHHHHHHHHHHHHHHHHh-CCCcEEE
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDS--LLRRAYYSLGNYIAAQDIKQDL-QKQPVVM 135 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~ 135 (259)
.++++.|++||||||.++..-. ....+ +.+.++...+.... .... -...-...+...+++.+ +|...|.
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~~--~~~~l-----sld~~r~~lg~~~~~e~sqk-~~~~~~~~l~~~l~qrl~~Gk~tii 74 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENFL--QNYVL-----SLDDLRLLLGVSASKENSQK-NDELVWDILYKQLEQRLRRGKFTII 74 (168)
T ss_pred eEEEEecCCCCchhHHHHHhCC--Cccee-----cHHHHHHHhhhchhhhhccc-cHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 4599999999999999975321 11122 23455554432111 0000 00000123444555555 6888889
Q ss_pred cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC
Q psy16563 136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN 198 (259)
Q Consensus 136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~ 198 (259)
|.+-.. ++....+...+......+.+|++++|++.|.+|...|.+
T Consensus 75 dAtn~r------------------r~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~R 119 (168)
T COG4639 75 DATNLR------------------REDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRER 119 (168)
T ss_pred EcccCC------------------HHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccch
Confidence 854321 223334444444455566789999999999999875554
No 167
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.46 E-value=1.3e-07 Score=70.86 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
+|+|.|++||||||+|+.|++.++..++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~ 29 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVIS 29 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEE
Confidence 59999999999999999999999987653
No 168
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=98.46 E-value=2.6e-06 Score=77.04 Aligned_cols=176 Identities=15% Similarity=0.108 Sum_probs=89.7
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccc-cch--HHHHHHHHHHHHHHHHHHHHhCCC
Q psy16563 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAH-DSL--LRRAYYSLGNYIAAQDIKQDLQKQ 131 (259)
Q Consensus 55 ~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~i~~~l~~~ 131 (259)
+.....|+|.|++|||||||++.|++.+|...+.+.+.. .+.+..... ..+ ......+......... .......
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~--~~~~~~~~~~~~l~~~D~~~ia~~~~~~~~~-~~~~a~~ 292 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRE--YVFSHLGGDEMALQYSDYDKIALGHAQYIDF-AVKYANK 292 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHH--HHHHhhcCCccCCChhhhHHHHhhhHHHHHH-HHHhcCC
Confidence 333456999999999999999999999987765442211 121111111 111 1100011111111100 0011356
Q ss_pred cEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHH
Q psy16563 132 PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK 211 (259)
Q Consensus 132 ~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~ 211 (259)
.+++|+-..++.+|.... .+. .+...+.+ .. ....|++++++.++.-..+=+ |...+ .+. ...
T Consensus 293 ~~f~Dt~~~~t~~y~~~y--~g~----~~p~l~~~---~~-~~ryDlvlll~pd~Pwv~DGl--R~~~D-~e~----R~~ 355 (399)
T PRK08099 293 VAFIDTDFVTTQAFCKKY--EGR----EHPFVQAL---ID-EYRFDLTILLENNTPWVADGL--RSLGS-SVD----RKR 355 (399)
T ss_pred eEEEeCChHHHHHHHHHh--CCC----CCHHHHHH---HH-hCCCCEEEEcCCCCCcccCCc--ccCCC-HHH----HHH
Confidence 899999999998887531 111 12222222 21 234677777755532221111 11111 111 233
Q ss_pred HHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 212 FRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 212 ~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
+.+.+.+.|.+. +.++++|+. ++ .++=..++.++|+.+.
T Consensus 356 f~~~l~~~l~~~-g~~~v~l~~-g~-~~eR~~~a~~~i~~~l 394 (399)
T PRK08099 356 FQNLLKEMLKEN-NIEYVHVES-PD-YDKRYLRCVELVDQML 394 (399)
T ss_pred HHHHHHHHHHHc-CCCEEEECC-CC-HHHHHHHHHHHHHHHh
Confidence 556667777665 345777742 23 7777777777777654
No 169
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.45 E-value=1.8e-06 Score=73.57 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=44.1
Q ss_pred CCEEEEEecCHHHHHHHHhh-ccC--CchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 176 PDLVIYLTVSEAIRLQRLSR-RKN--FTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~-R~~--~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
.--+|||+|+.+++++|-.. |.. .......++ -.++-++...++.....++|||++.++.+.-+.|.+.+..
T Consensus 82 ~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le----~I~~Er~~L~~lr~~Ad~vIDTs~l~~~~Lr~~i~~~~~~ 156 (284)
T PF03668_consen 82 DVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLE----AIEKERELLEPLRERADLVIDTSNLSVHQLRERIRERFGG 156 (284)
T ss_pred ceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHH----HHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 34589999999999999753 221 111111111 1122222233333334599999998899999999988753
No 170
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=98.45 E-value=2.5e-06 Score=72.46 Aligned_cols=173 Identities=14% Similarity=0.147 Sum_probs=96.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCC---CchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh--CCCc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPP---SSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL--QKQP 132 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l--~~~~ 132 (259)
..+|+|+|.+||||..+++.|.+++...++..-+ .+-.+.+ ... .-++...+ .|.+
T Consensus 56 ~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~eE~~------------------~p~-lWRfw~~lP~~G~i 116 (264)
T TIGR03709 56 SLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAEELD------------------HDF-LWRIHKALPERGEI 116 (264)
T ss_pred cEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHHc------------------Cch-HHHHHHhCCCCCeE
Confidence 5569999999999999999999999987653210 1111000 001 11223334 5999
Q ss_pred EEEcCCccchhhhhhhhhhccccCCCCCcchh---hhhcccccCCCCCEEEEEecCHHHHHHHHhhccC-Cch----HHH
Q psy16563 133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDD---DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN-FTL----EEN 204 (259)
Q Consensus 133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~---~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~-~~~----~~~ 204 (259)
.|+||.|+......-.. |...+..+...+. .+...+......=+.+||.+|.+++.+|+.+|-. ... ...
T Consensus 117 ~IF~RSWY~~vl~~rv~--g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~Wk~s~~ 194 (264)
T TIGR03709 117 GIFNRSHYEDVLVVRVH--GLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKNWKFSPA 194 (264)
T ss_pred EEEcCccccchhhhhhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCcccccCCHH
Confidence 99999999865332110 1000000011111 1222233333345689999999999999998852 110 011
Q ss_pred HHHHHHHHHHHHHHHHHhc------CCCCeEEEeCCCC--CHhhHHHHHHHHHhcc
Q psy16563 205 ELKKNAKFRELLTTIYRNM------NNPELVFVDNSEK--SVHESSNDIVELIHNL 252 (259)
Q Consensus 205 ~~e~~~~~~~~~~~~y~~~------~~~~~~vID~s~~--~~eev~~~I~~~l~~~ 252 (259)
... ..........+|+++ ...||++|+++.. .--.+.+.|.+.|+.+
T Consensus 195 D~~-~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ll~~l~~~ 249 (264)
T TIGR03709 195 DLK-ERAYWDDYMEAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEILLDALESL 249 (264)
T ss_pred HHH-HHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHHc
Confidence 111 223334444455544 2457999999985 1233566666666654
No 171
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.44 E-value=2.1e-05 Score=68.05 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=26.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASL 86 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~ 86 (259)
+.+|+|.|++||||||+|..||++++...
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 45799999999999999999999998763
No 172
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=98.36 E-value=1.5e-06 Score=72.50 Aligned_cols=171 Identities=15% Similarity=0.158 Sum_probs=83.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCC---CchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh--CCCc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPP---SSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL--QKQP 132 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l--~~~~ 132 (259)
+.+|+|+|.+||||+.+++.|.+++...++..-+ ++-.+.. .+ ..-+....+ .|.+
T Consensus 31 ~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE~~-----~p--------------~lwRfw~~lP~~G~I 91 (228)
T PF03976_consen 31 PVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEELR-----RP--------------FLWRFWRALPARGQI 91 (228)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHHHT-----S---------------TTHHHHTTS--TT-E
T ss_pred cEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhHcC-----CC--------------cHHHHHHhCCCCCEE
Confidence 4569999999999999999999999887653210 1111100 00 111222233 6999
Q ss_pred EEEcCCccchhhhhhhhhhccccC-CCCCcchhh---hhcccccCCCCCEEEEEecCHHHHHHHHhhccC-Cc-h---HH
Q psy16563 133 VVMDRFWHSTSAYGMANELVKNSD-LKLPDEDDD---IYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN-FT-L---EE 203 (259)
Q Consensus 133 vi~Dr~~~s~~~~~~~~~~~~~~~-~~l~~~~~~---l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~-~~-~---~~ 203 (259)
+|+||.|+......-.. | ..+ ..+...++. +...+......=+.+||.+|.+++.+|+.+|.. +. . .+
T Consensus 92 ~if~rSWY~~~l~~rv~--~-~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~~~wkv~~ 168 (228)
T PF03976_consen 92 GIFDRSWYEDVLVERVE--G-FIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPLKRWKVSP 168 (228)
T ss_dssp EEEES-GGGGGTHHHHT--T-SSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCCCGGG--H
T ss_pred EEEecchhhHHHHHHHh--c-CCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCccccccCCH
Confidence 99999999865432111 1 000 000011111 112222333344689999999999999998852 11 0 01
Q ss_pred HHHHH---HHHHHHHHHHHHHhc--CCCCeEEEeCCCCC--HhhHHHHHHHHHh
Q psy16563 204 NELKK---NAKFRELLTTIYRNM--NNPELVFVDNSEKS--VHESSNDIVELIH 250 (259)
Q Consensus 204 ~~~e~---~~~~~~~~~~~y~~~--~~~~~~vID~s~~~--~eev~~~I~~~l~ 250 (259)
...+. ...|.....+..... ...||++|+++... --.+++.|.+.|+
T Consensus 169 ~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~l~~~le 222 (228)
T PF03976_consen 169 EDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADDKRYARLAVARTLLDALE 222 (228)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCCHHHHHHHHHHHHHHHhH
Confidence 11111 222333333333222 24689999999851 1224444444443
No 173
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=1.4e-05 Score=66.55 Aligned_cols=171 Identities=19% Similarity=0.203 Sum_probs=95.0
Q ss_pred cCCCCCeEEEEcCCCCcHHHHHHHHHHHhhccccc---CCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh--
Q psy16563 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS---TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-- 128 (259)
Q Consensus 54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-- 128 (259)
..|...+|+++|.+++||.-..+.+.+.++....+ .|.++..+.. +-...+..+.+
T Consensus 70 ~~~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval~aPt~~E~~-------------------qwY~qRy~~~lPa 130 (270)
T COG2326 70 ETGQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVALPAPTDRERG-------------------QWYFQRYVAHLPA 130 (270)
T ss_pred hcCCeEEEEEecccccCCCchhHHHhhhcCCceeEEeecCCCChHhhc-------------------cHHHHHHHHhCCC
Confidence 34445569999999999999999999999876532 2222211100 11112222333
Q ss_pred CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhh-------hcccccCCCCCEEEEEecCHHHHHHHHhhccCC--
Q psy16563 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDI-------YSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-- 199 (259)
Q Consensus 129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l-------~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-- 199 (259)
.|.+||+||+|+.-.... +..|-+. ++..... ..++.....--+.+||.+++|++.+|...|...
T Consensus 131 ~GeiviFdRSwYnr~gVe--RVmGfct----~~q~~rfl~eip~FE~mL~~~Gi~l~Kfwl~Is~eeQ~~RF~~R~~dP~ 204 (270)
T COG2326 131 AGEIVIFDRSWYNRAGVE--RVMGFCT----PKQYKRFLREIPEFERMLVESGIILVKFWLSISREEQLERFLERRNDPL 204 (270)
T ss_pred CCeEEEechhhccccCee--eccccCC----HHHHHHHHHHhhHHHHHHHhCCeEEEEEEEeCCHHHHHHHHHHHhcCHH
Confidence 589999999998642211 1111111 1111111 112222333346889999999999999988632
Q ss_pred -----chHHHHHHHHHHHHHHHHHHHHhc----C--CCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 200 -----TLEENELKKNAKFRELLTTIYRNM----N--NPELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 200 -----~~~~~~~e~~~~~~~~~~~~y~~~----~--~~~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
++++. + ..........+|.++ . ..||++|.++.. --.=++-|..+|..+.
T Consensus 205 K~WKlSp~D~--~-~r~~WddYt~A~~em~~~T~T~~APW~vV~addK-k~aRlnvi~~il~~l~ 265 (270)
T COG2326 205 KQWKLSPMDL--E-SRDRWDDYTKAKDEMFARTSTPEAPWYVVPADDK-KRARLNVIRHLLSALP 265 (270)
T ss_pred hccCCCHHHH--H-HHHhHHHHHHHHHHHHhccCCCCCCeEEEeCCcH-HHHHHHHHHHHHHhcc
Confidence 22221 1 223333333344443 2 457999999987 3444445555555544
No 174
>PHA03133 thymidine kinase; Provisional
Probab=98.31 E-value=2.3e-05 Score=68.75 Aligned_cols=134 Identities=17% Similarity=0.174 Sum_probs=74.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcc----cccCCCCchHHHHHHhccc--------------cchH--HHH--HHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS----LKSTPPSSIMSLREKFDAH--------------DSLL--RRA--YYSL 115 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~----~~~~p~~~~~~~~~~~~~~--------------~~~~--~~~--~~~~ 115 (259)
...|.|+|+.|.||||.++.+...++.. ++.|| ..+|+.+|..+ +++. ... .-..
T Consensus 40 ~~rvYlDG~~GvGKTTt~~~l~~a~~~~~~vl~~pEP---M~YWr~~f~sd~i~~IY~tq~r~~~GeiS~~~A~~~~~s~ 116 (368)
T PHA03133 40 LLRIYVDGPHGLGKTTTAAALAAALGRRDDIEYVPEP---MAYWQVLGGSETIARIFDAQHRLDRGEISAGEAAVAMTSA 116 (368)
T ss_pred EEEEEEeCCCcCCHHHHHHHHHHhhCCCCCeEEecCc---HHHHHHHhhhhHHHHHHHHHHHHhccCcchhhhhhHHHHH
Confidence 3459999999999999999998887643 23343 33444444211 1110 000 1111
Q ss_pred H------HHHHHHHHHHHh-----------C--CCcEEEcCCccch-hhhhhhhhhccccCCCCCcchhhhhcc---ccc
Q psy16563 116 G------NYIAAQDIKQDL-----------Q--KQPVVMDRFWHST-SAYGMANELVKNSDLKLPDEDDDIYSW---PKD 172 (259)
Q Consensus 116 ~------~~~~~~~i~~~l-----------~--~~~vi~Dr~~~s~-~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~ 172 (259)
| .......+.+.+ . ...+++||.+.+. +.|-.++..-|.+ . +..+... +..
T Consensus 117 Q~kFatPy~~~~~~~~~~~g~~~~~~~~~~p~~d~~lifDRHPlAa~vcFPlary~~G~l--s----~~~lislla~lp~ 190 (368)
T PHA03133 117 QVTMSTPYAVTEAAVAPHIGGELPPGHAPHPNIDLTLVFDRHPVAPLLCYPAARYLMGSL--S----LPAVLSFAALLPP 190 (368)
T ss_pred HHHhcChHHHHHHHHHHHhccCCCCCCCCCCCCCeEEeecCCcCchhhhhhHHHHHcCCC--C----HHHHHHHHHhCCC
Confidence 1 111122232211 0 2468999999875 3444444322222 1 2222222 222
Q ss_pred CCCCCEEEEEecCHHHHHHHHhhccCCc
Q psy16563 173 LMKPDLVIYLTVSEAIRLQRLSRRKNFT 200 (259)
Q Consensus 173 ~~~pdlvI~L~a~~ev~~~Rl~~R~~~~ 200 (259)
...-+-+|+++.++++..+|+.+|++..
T Consensus 191 ~~pG~NiVl~~L~~~E~~~RL~~R~R~g 218 (368)
T PHA03133 191 TTPGTNLVLGALPEAAHAERLAQRQRPG 218 (368)
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHcCCCc
Confidence 2334679999999999999999998653
No 175
>KOG3078|consensus
Probab=98.31 E-value=2e-05 Score=65.41 Aligned_cols=166 Identities=16% Similarity=0.213 Sum_probs=92.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHH------HHHHHHHHHHHhC----C
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG------NYIAAQDIKQDLQ----K 130 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~l~----~ 130 (259)
.++.|++|+||+|++..+++.++..++.. ++-+|+.+....++..++--..+ -......+...++ .
T Consensus 18 ~v~~G~pg~gkgt~a~~l~~~~~~~hl~t----Gdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~ 93 (235)
T KOG3078|consen 18 AVLLGAPGSGKGTQAPRLTKNFGVIHIST----GDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ 93 (235)
T ss_pred EEEEeCCCCCCCccCHHHHHhcCCccchh----HHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence 89999999999999999999999888643 55566655544333222110110 0111122222221 2
Q ss_pred CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-----------
Q psy16563 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF----------- 199 (259)
Q Consensus 131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~----------- 199 (259)
...++|.|+. +..+..........+|++|.|.+|.+.+.+|+..|.-.
T Consensus 94 ~~~ildg~Pr---------------------t~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~ 152 (235)
T KOG3078|consen 94 KGFILDGFPR---------------------TVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEF 152 (235)
T ss_pred cccccCCCCc---------------------chHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccc
Confidence 3344444332 22211212223456899999999999999999988310
Q ss_pred ch-------------HHHHHHHHHHHHHHHHHHHHhcC--------CCC-eEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 200 TL-------------EENELKKNAKFRELLTTIYRNMN--------NPE-LVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 200 ~~-------------~~~~~e~~~~~~~~~~~~y~~~~--------~~~-~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
.+ ...+.+...+-.......|.+.. ... +..+++.. .++++..+...+....
T Consensus 153 ~pPk~~~~dDitgepL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~--~~~v~~~v~~~l~~~~ 226 (235)
T KOG3078|consen 153 NPPKVPGKDDITGEPLIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK--PEEVFPNVYAFLSKKV 226 (235)
T ss_pred cCCccccccccccChhhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc--hhHhHHHHHHHHHhhh
Confidence 00 00111112333444444555442 122 34444443 7999999999987653
No 176
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.28 E-value=2.2e-05 Score=63.31 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=23.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
||+|.|..|||++|+++.||+.||..++.
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d 29 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYD 29 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCC
Confidence 69999999999999999999999988653
No 177
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.26 E-value=5.3e-06 Score=70.09 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+.+|+|.|++|+||||+++.|+..+..
T Consensus 82 pfIIgiaGsvavGKST~ar~L~~ll~~ 108 (283)
T COG1072 82 PFIIGIAGSVAVGKSTTARILQALLSR 108 (283)
T ss_pred CEEEEeccCccccHHHHHHHHHHHHhh
Confidence 567999999999999999999987764
No 178
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=6.6e-07 Score=76.78 Aligned_cols=74 Identities=24% Similarity=0.322 Sum_probs=53.9
Q ss_pred cccHHHHHHHHHh----hccCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563 11 YPSLVSVLSILKS----AQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL 86 (259)
Q Consensus 11 ~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~ 86 (259)
.++-.+++..|+. +...-.--..+++|+|.|.....+..+.+..+++ |.+.||+|||||.+|+.||+.++.++
T Consensus 49 lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSN---ILLiGPTGsGKTlLAqTLAk~LnVPF 125 (408)
T COG1219 49 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSN---ILLIGPTGSGKTLLAQTLAKILNVPF 125 (408)
T ss_pred CCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeecc---EEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3556677777776 1122222244778999998654344446778887 99999999999999999999999886
Q ss_pred c
Q psy16563 87 K 87 (259)
Q Consensus 87 ~ 87 (259)
.
T Consensus 126 a 126 (408)
T COG1219 126 A 126 (408)
T ss_pred e
Confidence 4
No 179
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.17 E-value=8.7e-07 Score=70.87 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 31 EVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+.+++.+.|++....+++.|..+.+|.| +.++||+||||||+.++|.....
T Consensus 3 ~f~~V~k~Y~~g~~aL~~vs~~i~~Gef--~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 3 RFENVSKAYPGGREALRDVSFHIPKGEF--VFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred eehhhhhhcCCCchhhhCceEeecCceE--EEEECCCCCCHHHHHHHHHhhhc
Confidence 3467788898887789999999999999 99999999999999999987654
No 180
>PHA00729 NTP-binding motif containing protein
Probab=98.15 E-value=1.2e-05 Score=66.67 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+..|+|+|++|+||||+|..|++.++
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44599999999999999999999986
No 181
>PRK06761 hypothetical protein; Provisional
Probab=98.14 E-value=0.00028 Score=60.74 Aligned_cols=27 Identities=41% Similarity=0.639 Sum_probs=24.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
++|+|+|++||||||+++.|++.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 469999999999999999999998753
No 182
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=98.12 E-value=3.6e-05 Score=70.91 Aligned_cols=170 Identities=16% Similarity=0.184 Sum_probs=93.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCC---CchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh--CCC
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPP---SSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL--QKQ 131 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l--~~~ 131 (259)
...+|+++|.++|||...++.|.+.+...++..-+ ++-.+.. +...-++...+ .|.
T Consensus 298 ~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~Pt~~E~~-------------------~~~lwRf~~~lP~~G~ 358 (493)
T TIGR03708 298 RSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAAPTDEEKA-------------------QHYLWRFWRHIPRRGR 358 (493)
T ss_pred CCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCCcCHHHHc-------------------CcHHHHHHHhCCCCCe
Confidence 35569999999999999999999999887653211 1111110 01111223333 589
Q ss_pred cEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhc---ccccCCCCCEEEEEecCHHHHHHHHhhccCC-------ch
Q psy16563 132 PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS---WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-------TL 201 (259)
Q Consensus 132 ~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~---~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-------~~ 201 (259)
+.|+||+|+......- ..|...+......+.++.. .+......-+.+||.+|.+++.+|+.+|-.. ++
T Consensus 359 i~iFdRSwY~~vlver--v~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p~k~WK~t~ 436 (493)
T TIGR03708 359 ITIFDRSWYGRVLVER--VEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERENTPFKRYKITD 436 (493)
T ss_pred EEEEcCCccCCcceee--ecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhcCCccCCcCCH
Confidence 9999999997542210 0010000000111112211 2233344557899999999999999988621 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc----C--CCCeEEEeCCCCCH--hhHHHHHHHHHh
Q psy16563 202 EENELKKNAKFRELLTTIYRNM----N--NPELVFVDNSEKSV--HESSNDIVELIH 250 (259)
Q Consensus 202 ~~~~~e~~~~~~~~~~~~y~~~----~--~~~~~vID~s~~~~--eev~~~I~~~l~ 250 (259)
.+ +. +.+.......+|+++ . ..||++|+++.... -.+++.|...|.
T Consensus 437 ~D--~~-~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~dK~~ar~~v~~~l~~~l~ 490 (493)
T TIGR03708 437 ED--WR-NREKWDAYEDAVNDMIDRTSTIIAPWTLVEANDKRYARIKVLRTVCDAIE 490 (493)
T ss_pred HH--HH-HHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCChHHHHHHHHHHHHHHHH
Confidence 21 11 333344444455544 2 45899999998522 224444544443
No 183
>KOG0635|consensus
Probab=98.12 E-value=2.1e-05 Score=60.60 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=25.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASL 86 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~ 86 (259)
..+|.|+|.+||||||+|-.|.+.|....
T Consensus 31 GcviWiTGLSgSGKStlACaL~q~L~qrg 59 (207)
T KOG0635|consen 31 GCVIWITGLSGSGKSTLACALSQALLQRG 59 (207)
T ss_pred CcEEEEeccCCCCchhHHHHHHHHHHhcC
Confidence 45699999999999999999999887654
No 184
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.10 E-value=1.8e-06 Score=71.93 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=34.2
Q ss_pred cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..++++.|....+|.| ++|.||+||||||+.+.+|....
T Consensus 16 ~~vl~~i~L~v~~GEf--vsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 16 VEVLEDINLSVEKGEF--VAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred eEEeccceeEECCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 4567778888999999 99999999999999999998644
No 185
>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE. The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....
Probab=98.08 E-value=1.8e-05 Score=67.36 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=46.3
Q ss_pred CcEEEcCCccchh-hhhhhhhhccccCCCCCcchhhhhcccccC---CCCCEEEEEecCHHHHHHHHhhccCCchHHHHH
Q psy16563 131 QPVVMDRFWHSTS-AYGMANELVKNSDLKLPDEDDDIYSWPKDL---MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL 206 (259)
Q Consensus 131 ~~vi~Dr~~~s~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~---~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~ 206 (259)
..+|+||.+.+.. .|-.++-.-|.+ .+..+......+ ...+-+|+++.++++..+|+++|++..+. .
T Consensus 103 ~~~ifDRHplAA~vcFPlary~~G~l------s~~~li~lla~~p~~~pG~niVl~~L~~~E~~rRl~~R~R~gE~-v-- 173 (281)
T PF00693_consen 103 VWLIFDRHPLAATVCFPLARYLLGDL------SFEDLISLLATFPPEPPGTNIVLMTLPEEEHLRRLKARGRPGER-V-- 173 (281)
T ss_dssp EEEEEES-THHHHTHHHHHHHHTTSS-------HHHHHHHHTTS----TTEEEEEEE--HHHHHHHHHHTSTTT-S----
T ss_pred eEEEEecchhHHHHHHHHHHHHhCCC------CHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccc-c--
Confidence 4689999998753 444554333322 133333333222 23345788999999999999999965432 1
Q ss_pred HHHHHHHHHHHHHHHh
Q psy16563 207 KKNAKFRELLTTIYRN 222 (259)
Q Consensus 207 e~~~~~~~~~~~~y~~ 222 (259)
+..++..++..|.-
T Consensus 174 --d~~~l~~Lr~~Y~~ 187 (281)
T PF00693_consen 174 --DLNYLRALRNVYHA 187 (281)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHH
Confidence 45577777777664
No 186
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.07 E-value=2.1e-05 Score=61.72 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=24.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh-cccccC
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLK-ASLKST 89 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~-~~~~~~ 89 (259)
|+=.+++||||||++..|+..+| ..++..
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQn 31 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQN 31 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCcccc
Confidence 55678999999999999999999 766643
No 187
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.07 E-value=2.6e-06 Score=66.97 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=33.0
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..++..|...++|.+ |+|+||+||||||+.+.+|....
T Consensus 17 ~il~~isl~v~~Ge~--iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 17 KILNNISLSVRAGEF--IAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eeecceeeeecCCce--EEEeCCCCccHHHHHHHHHhccC
Confidence 456677788999999 99999999999999999998644
No 188
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.06 E-value=3.7e-05 Score=64.36 Aligned_cols=70 Identities=21% Similarity=0.232 Sum_probs=43.6
Q ss_pred EEEEecCHHHHHHHHhh--ccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 179 VIYLTVSEAIRLQRLSR--RKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 179 vI~L~a~~ev~~~Rl~~--R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
++||+|+.++..+|-.. |..+-.....+ .+-..+-++.-.++.+....+|||+..++.+..+.|.+.+..
T Consensus 86 iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l---~~~I~~ERelL~pLk~~A~~vIDTs~ls~~~Lr~~i~~~f~~ 157 (286)
T COG1660 86 VLFLEADDETLVRRYSETRRSHPLSEDGLL---LEAIAKERELLAPLREIADLVIDTSELSVHELRERIRTRFLG 157 (286)
T ss_pred EEEEECchhHHHHHHhhhhhcCCCCccCcH---HHHHHHHHHHHHHHHHHhhhEeecccCCHHHHHHHHHHHHcc
Confidence 88999999999999753 22110011101 111122222233333334599999998899999999999873
No 189
>PLN02165 adenylate isopentenyltransferase
Probab=98.06 E-value=4.4e-05 Score=66.94 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=27.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
.++|+|.||+||||||++..||+.++..+++
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIs 73 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIIN 73 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceec
Confidence 4469999999999999999999999866543
No 190
>KOG0744|consensus
Probab=98.06 E-value=0.00015 Score=62.80 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=35.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCC-------chHHHHHHhccccch
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS-------SIMSLREKFDAHDSL 107 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~-------~~~~~~~~~~~~~~~ 107 (259)
.+|.+.||||+|||++++.||+++..+....-.. +-.-+.+||.+.+.+
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKl 233 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKL 233 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhH
Confidence 3599999999999999999999998764322111 124567888877654
No 191
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.05 E-value=7.3e-07 Score=78.20 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=35.1
Q ss_pred HHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 37 NIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+.|.... ++++.|..+.+|.+ ++|.||+||||||+.+.+|....
T Consensus 11 K~yg~~~-~l~~i~l~i~~Gef--~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 11 KSFGSFE-VLKDVNLDIEDGEF--VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEcCCce-eeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 3444332 56677788999998 99999999999999999998544
No 192
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.00 E-value=1.1e-06 Score=72.58 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=42.2
Q ss_pred HHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 32 VEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++...|++....+++.|.++.+|.+ |+|.|++||||||+.+.|.....
T Consensus 6 ~~nl~k~yp~~~~aL~~Vnl~I~~GE~--VaiIG~SGaGKSTLLR~lngl~d 55 (258)
T COG3638 6 VKNLSKTYPGGHQALKDVNLEINQGEM--VAIIGPSGAGKSTLLRSLNGLVD 55 (258)
T ss_pred EeeeeeecCCCceeeeeEeEEeCCCcE--EEEECCCCCcHHHHHHHHhcccC
Confidence 455667787666778888899999998 99999999999999999988443
No 193
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.99 E-value=1.2e-06 Score=77.25 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=37.4
Q ss_pred HHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 34 ELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
++.+.|. ....+++.|..+.+|.+ ++|.||+||||||+.+.||...
T Consensus 10 ~v~k~yg-~~~av~~isl~i~~Gef--~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 10 NVSKSFG-DFTAVDDISLDIKKGEF--VTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred eeeeecC-CeeEEecceeeecCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence 3445565 44567778888999988 9999999999999999999853
No 194
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.99 E-value=5.9e-06 Score=55.77 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
+|+|+|++||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999997
No 195
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.98 E-value=4.9e-06 Score=67.96 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=36.1
Q ss_pred HHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHH
Q psy16563 34 ELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~ 80 (259)
++.+.|. ..+++++.+....+|.. ++|.||+||||||+.+.|..
T Consensus 7 ~l~K~fg-~~~VLkgi~l~v~~Gev--v~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 7 NLSKSFG-DKEVLKGISLSVEKGEV--VVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred eeeEEeC-CeEEecCcceeEcCCCE--EEEECCCCCCHHHHHHHHHC
Confidence 3444553 45688888889999987 99999999999999999865
No 196
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.94 E-value=0.00019 Score=63.35 Aligned_cols=85 Identities=14% Similarity=0.142 Sum_probs=49.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHH-HHHHHHHHHHHHHHHh--CCCcEEE
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAY-YSLGNYIAAQDIKQDL--QKQPVVM 135 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l--~~~~vi~ 135 (259)
..|+|.|++||||||+++.|++.++..++.+++.. .+.+.......+....+ .-+..+... ..... ...++++
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~--~~~~~~~~~~~l~~~d~~~i~~g~~~~--~~~~~~~a~~iif~ 238 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYARE--YVEEKLGGDEALQYSDYAQIALGQQRY--IDYAVRHAHKIAFI 238 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHH--HHHHhcCCCcccCHHHHHHHHHHHHHH--HHHHHhhcCCeEEE
Confidence 35999999999999999999999998876554211 12222111111111110 011111111 11122 3578999
Q ss_pred cCCccchhhhhh
Q psy16563 136 DRFWHSTSAYGM 147 (259)
Q Consensus 136 Dr~~~s~~~~~~ 147 (259)
|+-...+.+|..
T Consensus 239 D~~~~~t~~y~~ 250 (325)
T TIGR01526 239 DTDFITTQVFAK 250 (325)
T ss_pred cCChHHHHHHHH
Confidence 998888888864
No 197
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.93 E-value=6.2e-06 Score=68.39 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=31.5
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
..+++.+..+.+|.+ ++|.||+||||||+...|+--
T Consensus 19 ~~L~~v~l~i~~Ge~--vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 19 EALKDVNLEIEAGEF--VAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EecccceEEEcCCCE--EEEECCCCCCHHHHHHHHhcc
Confidence 467777888999998 999999999999999998764
No 198
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.93 E-value=0.00017 Score=60.00 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHh
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKF 101 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~ 101 (259)
-+|++.|.||.|||++|+.|++.|.+..+....-..+..|+.+
T Consensus 13 l~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~ 55 (222)
T PF01591_consen 13 LVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKL 55 (222)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecc
Confidence 4699999999999999999999998766544333344555443
No 199
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.88 E-value=6.3e-06 Score=69.72 Aligned_cols=40 Identities=25% Similarity=0.122 Sum_probs=34.2
Q ss_pred cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
...+++.|....+|.+ ++|.||+||||||+.+.|+..+..
T Consensus 15 ~~il~~ls~~i~~G~i--~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 15 KPILDDLSFSIPKGEI--TGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred eeEEecceEEecCCcE--EEEECCCCCCHHHHHHHHhccCCC
Confidence 3466777788888887 999999999999999999997763
No 200
>COG3911 Predicted ATPase [General function prediction only]
Probab=97.87 E-value=0.00057 Score=52.72 Aligned_cols=167 Identities=16% Similarity=0.141 Sum_probs=80.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHHH---HhCCCcE
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA-HDSLLRRAYYSLGNYIAAQDIKQ---DLQKQPV 133 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~---~l~~~~v 133 (259)
.++.+|+|.+|+||||+.+.|++. |...+.+++..+-........ .-.+.+...|+. ......+.. ...+..|
T Consensus 9 ~~~fIltGgpGaGKTtLL~aLa~~-Gfatvee~~r~ii~~es~~gg~~lPW~D~~afae--l~~~~~l~q~r~~~~~~~v 85 (183)
T COG3911 9 HKRFILTGGPGAGKTTLLAALARA-GFATVEEAGRDIIALESAQGGTALPWTDPGAFAE--LVGLQRLRQTRSAAVGGRV 85 (183)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHc-CceeeccchhhHHHHHHhcCCCcCCccChHHHHH--HHHHHHHHHhhcccccCce
Confidence 345999999999999999999885 444444433221111111110 001222223221 111112222 2357899
Q ss_pred EEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHH
Q psy16563 134 VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFR 213 (259)
Q Consensus 134 i~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~ 213 (259)
++||.+.+.++|...- .+ . ...+.+..|.+... ..--|||.-|.-.+.+--..|.- + ++....+.
T Consensus 86 FfDR~~~da~a~l~~l--sg-a-----~la~~v~~~~~~~~-Yn~rVfl~qp~~~iyqqde~Rk~-t-----ldeAv~~~ 150 (183)
T COG3911 86 FFDRGPPDALAYLRFL--SG-A-----LLADEVATIVREGR-YNPRVFLVQPWPFIYQQDEERKI-T-----LDEAVAFY 150 (183)
T ss_pred eeccCcHHHHHHHHHh--cc-c-----HHHHHHHHHHHhcC-CCCcEEecCCccccccchhhccc-C-----HHHHHHHH
Confidence 9999999888775311 11 0 11122233332222 22245555554444443333321 1 12245566
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHH
Q psy16563 214 ELLTTIYRNMNNPELVFVDNSEKSVHESSNDI 245 (259)
Q Consensus 214 ~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I 245 (259)
+.+...|..+.. -.|+--..++++-++-|
T Consensus 151 e~lv~aYt~LGy---elv~lp~a~Ve~Rv~fV 179 (183)
T COG3911 151 EVLVAAYTELGY---ELVPLPPAPVEDRVRFV 179 (183)
T ss_pred HHHHHHHHhcCc---eeeecCCccHHHHHHHH
Confidence 788888988743 33444333355444433
No 201
>KOG0733|consensus
Probab=97.84 E-value=3.2e-05 Score=71.81 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=39.0
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCC---------chHHHHHHhcc
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS---------SIMSLREKFDA 103 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~---------~~~~~~~~~~~ 103 (259)
..+.+. |.|.||+|||||.+|+.+|..++.+++..++. +-..+|++|++
T Consensus 220 v~PprG--vLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~ 277 (802)
T KOG0733|consen 220 VRPPRG--VLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQ 277 (802)
T ss_pred CCCCCc--eeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHH
Confidence 444455 99999999999999999999999998765432 23678888876
No 202
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=5e-06 Score=75.97 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=44.6
Q ss_pred HHHHHHHHhhhcc-ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 31 EVEELLNIYSRIN-ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 31 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+++++.-.|++.. .++++.|.....|.. |+|.|++||||||++++|++.+..
T Consensus 338 ~~~~vsF~y~~~~~~~L~~~~l~l~~GEk--vAIlG~SGsGKSTllqLl~~~~~~ 390 (573)
T COG4987 338 ELRNVSFTYPGQQTKALKNFNLTLAQGEK--VAILGRSGSGKSTLLQLLAGAWDP 390 (573)
T ss_pred eeccceeecCCCccchhhccceeecCCCe--EEEECCCCCCHHHHHHHHHhccCC
Confidence 5667777788764 789999999999988 999999999999999999987654
No 203
>KOG1384|consensus
Probab=97.78 E-value=0.00025 Score=61.39 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKST 89 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~ 89 (259)
-++|+|.|++|||||-|+-.||.+++.+.+..
T Consensus 7 ~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINs 38 (348)
T KOG1384|consen 7 DKVVVIMGATGAGKSRLAVDLATRFPGEIINS 38 (348)
T ss_pred ceEEEEecCCCCChhhhHHHHHHhCCceeecc
Confidence 45699999999999999999999999886643
No 204
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.77 E-value=2.2e-05 Score=59.27 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
|.|.||+|+||||+++.+++.++..++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~ 28 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIE 28 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccc
Confidence 6899999999999999999999876543
No 205
>KOG3308|consensus
Probab=97.74 E-value=0.00012 Score=59.12 Aligned_cols=28 Identities=11% Similarity=0.256 Sum_probs=25.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
.-+|+|.|.+.|||||||+.|.+.++..
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~ 31 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPGC 31 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccCC
Confidence 3469999999999999999999999876
No 206
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.73 E-value=1.7e-05 Score=64.76 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=31.1
Q ss_pred ccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 42 INETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
....+++.+..+.+++. .+|.||+||||||+.+.|-+..
T Consensus 19 ~~~aL~~i~l~i~~~~V--TAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 19 DKHALKDINLDIPKNKV--TALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred chhhhccCceeccCCce--EEEECCCCcCHHHHHHHHHhhc
Confidence 44566667667777665 9999999999999999997753
No 207
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.71 E-value=7.6e-05 Score=67.27 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=25.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
|.|.||+||||||+++.|++.++..++.
T Consensus 50 ILLiGppG~GKT~lAraLA~~l~~~fi~ 77 (441)
T TIGR00390 50 ILMIGPTGVGKTEIARRLAKLANAPFIK 77 (441)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 9999999999999999999999987653
No 208
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.70 E-value=2.4e-05 Score=65.02 Aligned_cols=37 Identities=22% Similarity=0.114 Sum_probs=31.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|.+..+|.. ++|.|++||||||+++.|+.+..
T Consensus 22 ~l~~VS~~i~~Ge~--lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 22 ALNNVSLEIERGET--LGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred hhcceeEEecCCCE--EEEEcCCCCCHHHHHHHHhcccC
Confidence 55667778888888 99999999999999999998654
No 209
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.67 E-value=2.8e-05 Score=63.06 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=30.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 7 il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 7 VLKGLNFAAERGEV--LALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred eecceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 45566677888887 9999999999999999998754
No 210
>KOG4238|consensus
Probab=97.66 E-value=8.9e-05 Score=64.79 Aligned_cols=161 Identities=14% Similarity=0.110 Sum_probs=91.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHH---HHhCCCcEEEc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIK---QDLQKQPVVMD 136 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~l~~~~vi~D 136 (259)
.|-++|.+|+||||+.-.|.+.+....+..-+.+++.+|.-+..+-++.. .+++.-.+++. .+......|+=
T Consensus 52 tvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~-----edreenirriaevaklfadaglvci 126 (627)
T KOG4238|consen 52 TVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSP-----EDREENIRRIAEVAKLFADAGLVCI 126 (627)
T ss_pred eEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCc-----hhHHHHHHHHHHHHHHHhcCCceee
Confidence 39999999999999999999999887765444456677766655543321 12223333332 22233333332
Q ss_pred CCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhh------ccCCchHHHHHHHHH
Q psy16563 137 RFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSR------RKNFTLEENELKKNA 210 (259)
Q Consensus 137 r~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~------R~~~~~~~~~~e~~~ 210 (259)
..+.|. |...+. ...+.-.....|.+-+|++++.++|.+|-.+ |.+. .
T Consensus 127 tsfisp--f~~dr~--------------~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkarage----------i 180 (627)
T KOG4238|consen 127 TSFISP--FAKDRE--------------NARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGE----------I 180 (627)
T ss_pred ehhcCh--hhhhhh--------------hhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhccc----------c
Confidence 222222 111111 1111112223477789999999999998422 2110 1
Q ss_pred HHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 211 KFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 211 ~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
.-+--+...|++-.. +-++++++..++.+.+.++.+.|...
T Consensus 181 ~gftgids~ye~pe~-~e~vl~t~~~~v~~cvqqvve~lq~~ 221 (627)
T KOG4238|consen 181 KGFTGIDSDYEKPET-PERVLKTNLSTVSDCVQQVVELLQEQ 221 (627)
T ss_pred ccccccccccCCCCC-hhHHhhcCCchHHHHHHHHHHHHHhc
Confidence 112233444543322 23677888777899999999988764
No 211
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.66 E-value=1e-05 Score=66.51 Aligned_cols=36 Identities=22% Similarity=0.189 Sum_probs=30.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 15 ~l~~v~~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 15 ILDDLSLDLYAGEI--IALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhcCC
Confidence 45666677888877 9999999999999999998754
No 212
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.65 E-value=3.2e-05 Score=70.01 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=51.5
Q ss_pred CCcccccccccccHH----HHHHHHHhhccCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHH
Q psy16563 1 MSSKYQLFAQYPSLV----SVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQ 76 (259)
Q Consensus 1 ~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~ 76 (259)
|+++..+.++++.|- ++.+.+.. -.....+++.++.. ..+++.|..+.+|.. ++|.|++||||||+++
T Consensus 1 ~~~~i~~~~~~k~fg~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~L~~isl~i~~Gei--~~LvG~NGsGKSTLLr 72 (400)
T PRK10070 1 MAIKLEIKNLYKIFGEHPQRAFKYIEQ-----GLSKEQILEKTGLS-LGVKDASLAIEEGEI--FVIMGLSGSGKSTMVR 72 (400)
T ss_pred CCcEEEEeeeEEecCCChHHHHHHHhc-----cccHHHHHhhcCCe-EEEEeEEEEEcCCCE--EEEECCCCchHHHHHH
Confidence 556665555555442 33344333 23344566666544 457778888898887 9999999999999999
Q ss_pred HHHHHhh
Q psy16563 77 TVAKKLK 83 (259)
Q Consensus 77 ~l~~~~~ 83 (259)
.|+..+.
T Consensus 73 ~I~Gl~~ 79 (400)
T PRK10070 73 LLNRLIE 79 (400)
T ss_pred HHHcCCC
Confidence 9998653
No 213
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.63 E-value=1.7e-05 Score=66.42 Aligned_cols=48 Identities=19% Similarity=0.374 Sum_probs=37.0
Q ss_pred HHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 33 EELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+++.+.|.. ....++.|..+..|.+ +++.||+||||||..+++-+.+.
T Consensus 5 ~nvsk~y~~-~~av~~v~l~I~~gef--~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 5 ENVSKRYGN-KKAVDDVNLTIEEGEF--LVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred eeeehhcCC-ceeeeeeeEEecCCeE--EEEECCCCCcHHHHHHHHhcccC
Confidence 344555553 3455667778888888 99999999999999999987654
No 214
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.62 E-value=3.1e-05 Score=65.26 Aligned_cols=45 Identities=20% Similarity=0.165 Sum_probs=35.8
Q ss_pred HHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 36 LNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.-.|++. .++.+.|....+|.+ ++|.||+||||||+.+.+...+.
T Consensus 11 ~v~y~~~-~vl~~i~l~v~~G~~--~~iiGPNGaGKSTLlK~iLGll~ 55 (254)
T COG1121 11 TVSYGNR-PVLEDISLSVEKGEI--TALIGPNGAGKSTLLKAILGLLK 55 (254)
T ss_pred EEEECCE-eeeeccEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCc
Confidence 3345544 477888888898887 99999999999999999977443
No 215
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.62 E-value=1.5e-05 Score=65.79 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=31.0
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 14 ~l~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 14 VLEDVSFEVKPGEF--LAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred eeecceeEEcCCCE--EEEECCCCCCHHHHHHHHcCCC
Confidence 56677778888887 9999999999999999998754
No 216
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=9.3e-05 Score=69.97 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=52.1
Q ss_pred cccccHHHHHHHHHhhc---cCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 9 AQYPSLVSVLSILKSAQ---YSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 9 ~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
....+...++++|+... .++..++.+.+....+.. .. +.|++++.||||.|||++++.+|+.++-.
T Consensus 309 k~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~---------~~--kGpILcLVGPPGVGKTSLgkSIA~al~Rk 377 (782)
T COG0466 309 KDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTK---------KL--KGPILCLVGPPGVGKTSLGKSIAKALGRK 377 (782)
T ss_pred chhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhc---------cC--CCcEEEEECCCCCCchhHHHHHHHHhCCC
Confidence 45677889999999832 555666666665544332 12 24789999999999999999999999988
Q ss_pred cccC
Q psy16563 86 LKST 89 (259)
Q Consensus 86 ~~~~ 89 (259)
+++.
T Consensus 378 fvR~ 381 (782)
T COG0466 378 FVRI 381 (782)
T ss_pred EEEE
Confidence 7653
No 217
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.61 E-value=0.00012 Score=66.47 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=46.4
Q ss_pred cccHHHHHHHHHhhccCChH----HHHHHHHHhhhccccCCCC-CCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 11 YPSLVSVLSILKSAQYSSLP----EVEELLNIYSRINETNDQD-SGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 11 ~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
+.+-.++...|++....+-. ...+++++|.+........ +....++. |.|.||+||||||+|+.|++.++.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~---iLl~Gp~GtGKT~lAr~lA~~l~~p 135 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSN---ILLIGPTGSGKTLLAQTLARILDVP 135 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCce---EEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 45667777777762222222 2334456666653321110 11223333 9999999999999999999999877
Q ss_pred ccc
Q psy16563 86 LKS 88 (259)
Q Consensus 86 ~~~ 88 (259)
++.
T Consensus 136 f~~ 138 (412)
T PRK05342 136 FAI 138 (412)
T ss_pred cee
Confidence 653
No 218
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.61 E-value=0.0028 Score=49.43 Aligned_cols=160 Identities=17% Similarity=0.123 Sum_probs=84.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccC---------CCCch----HHHHHH-hcccc-ch---HHHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKST---------PPSSI----MSLREK-FDAHD-SL---LRRAYYSLGNYIA 120 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~---------p~~~~----~~~~~~-~~~~~-~~---~~~~~~~~~~~~~ 120 (259)
.+|.+-|.+-+|||++|..+.+....++... |+... ....+. ...+. .+ ....++...-...
T Consensus 24 riVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~~~~~ 103 (205)
T COG3896 24 RIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELAMHSR 103 (205)
T ss_pred eEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHHHHHHH
Confidence 4599999999999999999998777665321 11100 000000 00000 00 0000111000011
Q ss_pred HHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563 121 AQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF 199 (259)
Q Consensus 121 ~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~ 199 (259)
...|.... +|..||.|-+.+.-- .+++-...+ ...+-..|=+.||.|+.++|-..|++.
T Consensus 104 r~ai~a~ad~G~~~i~Ddv~~~r~--------------~L~Dc~r~l------~g~~v~~VGV~~p~E~~~~Re~rr~dR 163 (205)
T COG3896 104 RRAIRAYADNGMNVIADDVIWTRE--------------WLVDCLRVL------EGCRVWMVGVHVPDEEGARRELRRGDR 163 (205)
T ss_pred HHHHHHHhccCcceeehhcccchh--------------hHHHHHHHH------hCCceEEEEeeccHHHHHHHHhhcCCc
Confidence 11222222 577888886655310 011111111 123556778999999999998877643
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcC-CCC-eEEEeCCCCCHhhHHHHHHHHHh
Q psy16563 200 TLEENELKKNAKFRELLTTIYRNMN-NPE-LVFVDNSEKSVHESSNDIVELIH 250 (259)
Q Consensus 200 ~~~~~~~e~~~~~~~~~~~~y~~~~-~~~-~~vID~s~~~~eev~~~I~~~l~ 250 (259)
.+--.. . .|+... ... .+.|||+.+++.|.+..|.+.++
T Consensus 164 ~pG~~r------g------~~r~vHa~~~YDlevDTS~~tp~EcAr~i~~r~q 204 (205)
T COG3896 164 HPGWNR------G------SARAVHADAEYDLEVDTSATTPHECAREIHERYQ 204 (205)
T ss_pred Ccchhh------h------hHHHhcCCcceeeeecccCCCHHHHHHHHHHHhc
Confidence 221110 0 222221 122 48899999999999999987653
No 219
>KOG0058|consensus
Probab=97.61 E-value=1.5e-05 Score=75.23 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=44.9
Q ss_pred HHHHHHHHhhhccc--cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 31 EVEELLNIYSRINE--TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 31 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+.+++.-+|+.++. ++++.|..+.+|+. +++.||+|+||||++.+|-+.+..
T Consensus 467 eF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~--vALVGPSGsGKSTiasLL~rfY~P 520 (716)
T KOG0058|consen 467 EFEDVSFAYPTRPDVPVLKNLSFTIRPGEV--VALVGPSGSGKSTIASLLLRFYDP 520 (716)
T ss_pred EEEEeeeecCCCCCchhhcCceeeeCCCCE--EEEECCCCCCHHHHHHHHHHhcCC
Confidence 35566778888876 88899999999998 999999999999999999887764
No 220
>PRK09169 hypothetical protein; Validated
Probab=97.60 E-value=0.00035 Score=73.11 Aligned_cols=140 Identities=11% Similarity=0.010 Sum_probs=77.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccccCCCC----chHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEEc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS----SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMD 136 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~D 136 (259)
|+|+|..|+||||+++.|+..++..++..... .+..|.++|...+ +. +......+...+....||..
T Consensus 2113 IvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~GrkI~rIFa~eG-~F--------Re~Eaa~V~Dllr~~vVLST 2183 (2316)
T PRK09169 2113 RRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIGKKIARIQALRG-LS--------PEQAAARVRDALRWEVVLPA 2183 (2316)
T ss_pred cceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhCCCHHHHHHhcC-ch--------HHHHHHHHHHHhcCCeEEeC
Confidence 89999999999999999999999887753211 1123444444333 11 12334445554443333332
Q ss_pred CCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC------ch-HHHHH--H
Q psy16563 137 RFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF------TL-EENEL--K 207 (259)
Q Consensus 137 r~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~------~~-~~~~~--e 207 (259)
|++. ...++....+. .-.++|||..+.+++.+|+....+. +. .|..+ .
T Consensus 2184 ---------------GGGa-v~~~enr~~L~-------~~GlvV~L~an~~tl~~Rty~g~NRPLL~~~~~~FEiQFHT~ 2240 (2316)
T PRK09169 2184 ---------------EGFG-AAVEQARQALG-------AKGLRVMRINNGFAAPDTTYAGLNVNLRTAAGLDFEIQFHTA 2240 (2316)
T ss_pred ---------------CCCc-ccCHHHHHHHH-------HCCEEEEEECCHHHHHHHhccCCCCccccCCCCccchhccHH
Confidence 3333 11122222221 1246999999999999999643211 11 00000 1
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEeCCC
Q psy16563 208 KNAKFRELLTTIYRNMNNPELVFVDNSE 235 (259)
Q Consensus 208 ~~~~~~~~~~~~y~~~~~~~~~vID~s~ 235 (259)
......+..+..|+++.+ +.|++..
T Consensus 2241 esl~Lk~eRhpLYEqvAD---l~V~~~~ 2265 (2316)
T PRK09169 2241 DSLRTKNKTHKLYEKLQD---LEVAPAR 2265 (2316)
T ss_pred HHHHHHHHhHHHHHHhcC---cccccCC
Confidence 133355667788887754 5566544
No 221
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.60 E-value=4.8e-05 Score=61.40 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=30.8
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+.+.|..+..|.+ +++.||+||||||+.+.+|....
T Consensus 20 ~le~vsL~ia~ge~--vv~lGpSGcGKTTLLnl~AGf~~ 56 (259)
T COG4525 20 ALEDVSLTIASGEL--VVVLGPSGCGKTTLLNLIAGFVT 56 (259)
T ss_pred hhhccceeecCCCE--EEEEcCCCccHHHHHHHHhcCcC
Confidence 34456667888888 99999999999999999998654
No 222
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.60 E-value=4e-05 Score=61.61 Aligned_cols=33 Identities=18% Similarity=0.086 Sum_probs=27.8
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHH
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVA 79 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~ 79 (259)
.+++.|....+|.. ++|.||+||||||+.+.+.
T Consensus 10 ~l~~isl~i~~G~~--~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 10 NLQNLDVSIPLNVL--VVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred eecceEEEEcCCCE--EEEECCCCCCHHHHHHHHh
Confidence 45566677888877 9999999999999999885
No 223
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.59 E-value=3.2e-05 Score=56.66 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=23.9
Q ss_pred CCCcccCCCCCeEEEEcCCCCcHHHHHHHHH
Q psy16563 49 DSGVGDDRKYPLIVFEGLDGCGKSHTSQTVA 79 (259)
Q Consensus 49 ~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~ 79 (259)
.+....++.. ++|.|++||||||+++.+.
T Consensus 8 vsl~i~~ge~--v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 8 VLVDVYGKVG--VLITGDSGIGKTELALELI 36 (107)
T ss_pred eEEEEcCCEE--EEEEcCCCCCHHHHHHHhh
Confidence 3345666666 9999999999999999987
No 224
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.58 E-value=4.1e-05 Score=63.42 Aligned_cols=35 Identities=17% Similarity=0.059 Sum_probs=29.5
Q ss_pred CCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 46 NDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 46 ~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
+++.|..+.+|.. ++|.|++||||||+.+.|+..+
T Consensus 3 l~~vs~~i~~Ge~--~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 3 LDKTDFVMGYHEH--IGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred eeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCc
Confidence 3455667888877 9999999999999999999764
No 225
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.57 E-value=2.1e-05 Score=60.09 Aligned_cols=32 Identities=25% Similarity=0.221 Sum_probs=27.0
Q ss_pred CCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 50 SGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 50 ~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+..+.+|.. ++|.|++||||||+.+.|+..+.
T Consensus 5 ~~~i~~g~~--~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 5 SLEIKPGEI--VAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EEEEETTSE--EEEEESTTSSHHHHHHHHTTSSH
T ss_pred EEEEcCCCE--EEEEccCCCccccceeeeccccc
Confidence 345677776 99999999999999999988765
No 226
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.56 E-value=4.2e-05 Score=63.40 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=31.8
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 18 ~il~~~s~~i~~G~~--~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 18 QALKGVSLSIEKGEF--VAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred eEEeeeEEEEcCCCE--EEEEcCCCCCHHHHHHHHhCCcC
Confidence 356667777888887 99999999999999999987653
No 227
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.56 E-value=5e-05 Score=62.74 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 17 il~~is~~i~~G~~--~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 17 ALHDVSLHIRKGEF--LFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred eecceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 56667777888876 9999999999999999998764
No 228
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.56 E-value=5.2e-05 Score=63.90 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=31.6
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 16 ~il~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 16 QALKNINLNINPGEF--VAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred ceeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCc
Confidence 356677778888887 9999999999999999998765
No 229
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.55 E-value=4.3e-05 Score=63.28 Aligned_cols=37 Identities=19% Similarity=0.101 Sum_probs=31.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 18 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 18 ALDNLNFHITKGEM--VFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred EEEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 55666777888877 99999999999999999998653
No 230
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.55 E-value=3.6e-05 Score=72.33 Aligned_cols=45 Identities=20% Similarity=0.034 Sum_probs=36.7
Q ss_pred HHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 37 NIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
-.|+....++++.|..+.+|.. |+|.|++||||||++++|...+.
T Consensus 342 f~Y~~~~~vL~~isl~i~~G~~--vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 342 FGYPGSPPVLDGVSLDLPPGER--VAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred EecCCCCceeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 3454434478888888999988 99999999999999999987654
No 231
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=4.2e-05 Score=64.18 Aligned_cols=37 Identities=16% Similarity=0.095 Sum_probs=31.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 15 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 15 VLKGVDLDVRRGEI--LAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 45666777888887 99999999999999999997653
No 232
>KOG0707|consensus
Probab=97.55 E-value=0.0025 Score=52.70 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=25.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+...-|+|.||+|+||+|+.++|.+.++.
T Consensus 35 ~~~~~ivl~gpsg~gk~tll~~l~ee~~~ 63 (231)
T KOG0707|consen 35 GDFKPIVLSGPSGVGKSTLLKRLREELGG 63 (231)
T ss_pred CCCceEEEeCCCCcchhHHHHHHHHHcCC
Confidence 33344999999999999999999999985
No 233
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.55 E-value=5.5e-05 Score=58.23 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=22.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+|+|.||+||||||+++.|++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCc
Confidence 3899999999999999999998654
No 234
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.55 E-value=0.00011 Score=60.77 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
++-+.+.||||+||||+|..+|+.++..+..
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~ 80 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFKI 80 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EEE
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeEe
Confidence 3449999999999999999999999987643
No 235
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=5.5e-05 Score=62.48 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=31.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 15 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 15 ALDDLSLTVEPGEF--LALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred eecceeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence 56667777888887 9999999999999999998764
No 236
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.54 E-value=4.8e-05 Score=63.47 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=31.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 15 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 15 ALKDISLDIPKGEI--TALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhc
Confidence 45666677888877 9999999999999999999876
No 237
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.54 E-value=9.7e-05 Score=56.41 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcc-cccCCC
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKAS-LKSTPP 91 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~-~~~~p~ 91 (259)
+|+|.|+.||||||+++.+++.++.. .+.+|.
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPT 56 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPT 56 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCC
Confidence 49999999999999999999999864 344443
No 238
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.54 E-value=5.1e-05 Score=62.96 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=31.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 17 il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 17 AVDDLSLNVYKGEI--FGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred eecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 56667777888887 99999999999999999997653
No 239
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.53 E-value=6.1e-05 Score=62.79 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=31.7
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 19 ~~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 19 KALDDVSFSIKKGET--LGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred eeecCceeEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 356677778888887 9999999999999999999764
No 240
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.53 E-value=5.3e-05 Score=62.46 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|....+|.. ++|.|++||||||+++.|+..+.
T Consensus 16 il~~vs~~i~~G~~--~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 16 ALDDISLTIKKGEF--VLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred eecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 55666677788876 99999999999999999987653
No 241
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.52 E-value=5.4e-05 Score=63.53 Aligned_cols=36 Identities=19% Similarity=0.086 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 15 ~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 15 ALDDVSFSVRPGEI--HGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EecCceEEecCCcE--EEEECCCCCCHHHHHHHHcCCC
Confidence 56667777888877 9999999999999999998754
No 242
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.52 E-value=5e-05 Score=62.70 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=30.8
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 16 ~l~~~sl~i~~G~~--~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 16 ALDGINISISAGEF--VFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCC
Confidence 55666677888887 9999999999999999999865
No 243
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=5.9e-05 Score=63.46 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=31.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 16 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 16 ALKDVSLSINPGEF--VALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCc
Confidence 56667778888887 9999999999999999999765
No 244
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.51 E-value=6.7e-05 Score=62.76 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=31.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 15 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 15 VVNGVSLSVKQGEI--VGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred eeccceeEecCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence 56667777888887 9999999999999999999764
No 245
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.51 E-value=5.7e-05 Score=62.00 Aligned_cols=37 Identities=22% Similarity=0.111 Sum_probs=31.3
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 13 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 13 ILDDLNLTIEKGKM--YAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred EEeceEEEEeCCcE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 56667777888877 99999999999999999997653
No 246
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.51 E-value=6.8e-05 Score=61.87 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=31.0
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+.+.|+..+.
T Consensus 15 ~l~~~s~~i~~G~~--~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 15 VLKGIDLTVKKGEV--VVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred eecCceEEECCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 45666677888877 99999999999999999997643
No 247
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=5.4e-05 Score=62.87 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 19 il~~vs~~i~~G~~--~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 19 ALEDISLSVEEGEF--VALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEeceeEEEeCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence 55667777888887 9999999999999999998764
No 248
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.50 E-value=6.4e-05 Score=63.30 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=31.0
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 15 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 15 ILKGVNLTVKKGEI--HAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred EEeccceEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 56667778888887 9999999999999999998763
No 249
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.50 E-value=0.00018 Score=65.20 Aligned_cols=74 Identities=22% Similarity=0.274 Sum_probs=45.7
Q ss_pred cccHHHHHHHHHhh----ccCChHHHHHHHHHhhhcccc-CCC--CCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 11 YPSLVSVLSILKSA----QYSSLPEVEELLNIYSRINET-NDQ--DSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 11 ~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+.+..++...|++. .........+++++|.+.... ... ......++. |.|.||+|+|||++|+.||+.++
T Consensus 65 ~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~---iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 65 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSN---ILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred CCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCce---EEEECCCCcCHHHHHHHHHHhcC
Confidence 45677777777772 222333344556777765321 000 001122232 99999999999999999999988
Q ss_pred cccc
Q psy16563 84 ASLK 87 (259)
Q Consensus 84 ~~~~ 87 (259)
..+.
T Consensus 142 ~pf~ 145 (413)
T TIGR00382 142 VPFA 145 (413)
T ss_pred CCeE
Confidence 6653
No 250
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=6.4e-05 Score=62.96 Aligned_cols=38 Identities=16% Similarity=0.054 Sum_probs=32.2
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+++.+..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 19 ~il~~~s~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 19 TALKDVSLSVPKGEI--FGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred eeeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 356667777888887 99999999999999999998654
No 251
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.50 E-value=6.2e-05 Score=62.13 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=31.3
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 15 ~l~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 15 ALDDLNLDIADGEF--VVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred eeeceEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 45666677888887 99999999999999999998653
No 252
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.50 E-value=5.3e-05 Score=62.94 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 15 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 15 ILFGVSLTVPEGEI--VALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred EeeeeeEEEcCCeE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 45566677888887 99999999999999999987643
No 253
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=6.8e-05 Score=62.29 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=30.7
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 15 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 15 AVRGVSFRVRRGEI--FGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred eeeceeEEECCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 55666677888877 9999999999999999999764
No 254
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=8.2e-05 Score=63.87 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=38.5
Q ss_pred HHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 31 EVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
...++...|+.. ..+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 26 ~~~~~~~~~~~~-~il~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 26 SKEEILKKTGQT-VGVNDVSLDVREGEI--FVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred hhhhhhhhcCCc-eEeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 344555556443 356777778888887 99999999999999999998653
No 255
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.49 E-value=0.00032 Score=63.36 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=25.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
|.|.||+||||||+|+.|++.++..++.
T Consensus 53 ILliGp~G~GKT~LAr~LAk~l~~~fi~ 80 (443)
T PRK05201 53 ILMIGPTGVGKTEIARRLAKLANAPFIK 80 (443)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCChhee
Confidence 9999999999999999999999987654
No 256
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=97.49 E-value=0.0019 Score=50.49 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=26.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
++|+|.|+-.||||||++.||+.++....
T Consensus 9 K~VailG~ESsGKStLv~kLA~~fnt~~~ 37 (187)
T COG3172 9 KTVAILGGESSGKSTLVNKLANIFNTTSA 37 (187)
T ss_pred eeeeeecCcccChHHHHHHHHHHhCCCch
Confidence 45999999999999999999999997643
No 257
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=5.7e-05 Score=62.26 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=30.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+....+|.. ++|.|++||||||+++.|+..+
T Consensus 15 ~l~~v~~~i~~G~~--~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 15 ALDDISFSVEKGEI--FGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence 45556667888877 9999999999999999999754
No 258
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=6.3e-05 Score=60.16 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=30.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+....+|.. ++|.|++||||||+++.|+..+
T Consensus 15 ~l~~~~~~i~~Ge~--~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 15 ALDDISLTVEKGEI--YGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred eeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence 45566677888887 9999999999999999998764
No 259
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.48 E-value=7.6e-05 Score=59.33 Aligned_cols=37 Identities=19% Similarity=0.066 Sum_probs=31.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+....+|.. ++|.|++||||||+++.|+..+.
T Consensus 16 ~l~~i~l~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 16 LLKDLSFEIKPGDR--LLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred eeecCeEEECCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 45666677888887 99999999999999999987653
No 260
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.48 E-value=3.6e-05 Score=62.39 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=38.5
Q ss_pred HHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 32 VEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+..++++|+......++.|.....|.. .+|.|++|+||||+.+.|+..+..
T Consensus 4 v~~l~K~y~~~v~AvrdVSF~ae~Gei--~GlLG~NGAGKTT~LRmiatlL~P 54 (245)
T COG4555 4 VTDLTKSYGSKVQAVRDVSFEAEEGEI--TGLLGENGAGKTTLLRMIATLLIP 54 (245)
T ss_pred eeehhhhccCHHhhhhheeEEeccceE--EEEEcCCCCCchhHHHHHHHhccC
Confidence 344556665543345566677888876 999999999999999999998753
No 261
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.48 E-value=0.00027 Score=59.57 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=24.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
++..+|+|+||||+||||+...|...+...
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 445679999999999999999999988754
No 262
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.48 E-value=9.1e-05 Score=55.64 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=24.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
.+.|.||+||||||+++.|+..+...
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCC
Confidence 49999999999999999999998875
No 263
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.47 E-value=6.3e-05 Score=62.44 Aligned_cols=37 Identities=16% Similarity=0.039 Sum_probs=31.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 20 ~l~~isl~i~~G~~--~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 20 VLKGVSLSIGKGEI--VAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred eEeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 55666777888887 99999999999999999987643
No 264
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.47 E-value=0.0001 Score=59.65 Aligned_cols=50 Identities=22% Similarity=0.173 Sum_probs=39.9
Q ss_pred HHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 32 VEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
++++.+.|+.. .++++.|..+.+|.. -+|.||+|+||||+...+++.++.
T Consensus 4 i~nv~K~y~~~-~vl~~isl~i~~g~i--Ts~IGPNGAGKSTLLS~~sRL~~~ 53 (252)
T COG4604 4 IENVSKSYGTK-VVLDDVSLDIPKGGI--TSIIGPNGAGKSTLLSMMSRLLKK 53 (252)
T ss_pred ehhhhHhhCCE-EeeccceeeecCCce--eEEECCCCccHHHHHHHHHHhccc
Confidence 45566677544 467778888888876 999999999999999999987764
No 265
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=6.6e-05 Score=63.20 Aligned_cols=36 Identities=19% Similarity=0.112 Sum_probs=31.0
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 17 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 17 ALDDVSLDIPSGEL--VALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 56666777888887 9999999999999999998865
No 266
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.47 E-value=6.1e-05 Score=72.73 Aligned_cols=51 Identities=18% Similarity=0.061 Sum_probs=41.4
Q ss_pred HHHHHHHhhhc-cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 32 VEELLNIYSRI-NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 32 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.+++.-.|+.. +.++++.|.++.+|.+ |+|.|.+||||||++++|...+..
T Consensus 474 ~~nvsf~y~~~~~~vL~~isL~I~~Ge~--vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 474 FENVSFRYGPDDPPVLEDLSLEIPPGEK--VAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred EEEEEEEeCCCCcchhhceeEEeCCCCE--EEEECCCCCCHHHHHHHHhcCCCC
Confidence 33444466665 5588888899999998 999999999999999999887654
No 267
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.46 E-value=7.2e-05 Score=63.83 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=32.1
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 27 ~il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 27 HALKNINLDIAKNQV--TAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EEeeceeEEEcCCCE--EEEECCCCCCHHHHHHHHhccc
Confidence 356677778888887 9999999999999999999765
No 268
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.46 E-value=7.3e-05 Score=61.92 Aligned_cols=36 Identities=25% Similarity=0.169 Sum_probs=30.7
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 20 il~~~sl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 20 AVDGVSFTVKPGEV--TGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred eecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCc
Confidence 56666677888887 9999999999999999998754
No 269
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.46 E-value=7.6e-05 Score=62.38 Aligned_cols=37 Identities=19% Similarity=0.061 Sum_probs=31.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 15 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 15 ILRGVSLEVPKGEV--TCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred EecceeeEECCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 45666777888887 99999999999999999997654
No 270
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=6.8e-05 Score=63.88 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 16 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 16 ALEDINLTLESGEL--LVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred eEeeeeEEECCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 45566677888887 9999999999999999999865
No 271
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.46 E-value=6.9e-05 Score=60.21 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=30.0
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+....+|.. ++|.|++||||||+++.|+..+
T Consensus 15 ~l~~i~~~i~~G~~--~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 15 VLNDVSLNIEAGEI--VALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 45556667888887 9999999999999999998654
No 272
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.46 E-value=7.5e-05 Score=62.33 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=31.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 22 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 22 ILNNISFSLRAGEF--KLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred eeeccEEEEcCCCE--EEEECCCCCCHHHHHHHHhccc
Confidence 56677778888887 9999999999999999998754
No 273
>PLN02840 tRNA dimethylallyltransferase
Probab=97.46 E-value=0.00013 Score=65.95 Aligned_cols=32 Identities=34% Similarity=0.558 Sum_probs=27.2
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL 86 (259)
Q Consensus 55 ~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~ 86 (259)
..+.++|+|.||+||||||++..|++.++..+
T Consensus 18 ~~~~~vi~I~GptgsGKTtla~~La~~~~~~i 49 (421)
T PLN02840 18 TKKEKVIVISGPTGAGKSRLALELAKRLNGEI 49 (421)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHCCCCe
Confidence 33455799999999999999999999998653
No 274
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.46 E-value=6.9e-05 Score=62.97 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 16 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 16 ALDDVSFTVRPGEF--VALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCc
Confidence 55666777888887 9999999999999999998764
No 275
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.46 E-value=7.2e-05 Score=62.46 Aligned_cols=36 Identities=22% Similarity=0.056 Sum_probs=31.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 25 ~l~~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 25 ILTGVELVVKRGET--IALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEeccEEEEcCCCE--EEEECCCCCCHHHHHHHHHcCC
Confidence 56667777888877 9999999999999999999865
No 276
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.46 E-value=4.2e-05 Score=63.82 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=32.0
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+++.+..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 21 ~~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 21 RILNDVSLHVESGQV--MAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred ccccCceEEEcCCeE--EEEECCCCCCHHHHHHHHhCccC
Confidence 456667777888877 99999999999999999998654
No 277
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.45 E-value=7.6e-05 Score=63.35 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=31.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 21 il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 21 ALHDISLEFEQNQV--TALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eecceeEEEeCCCE--EEEECCCCCCHHHHHHHHHhhc
Confidence 56667777888887 9999999999999999999764
No 278
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=8.2e-05 Score=63.03 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=31.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 18 ~l~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 18 VLDGVNLEIPDNTI--TALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred eeecceeEEcCCCE--EEEECCCCCCHHHHHHHHhccCC
Confidence 55667777888887 99999999999999999998753
No 279
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.45 E-value=0.00016 Score=57.86 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
+.++|+|.|++||||||+++.|...+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 36689999999999999999999988753
No 280
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.45 E-value=0.00012 Score=56.18 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=24.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
|.|.|++|+|||++++.+++.++..++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceE
Confidence 789999999999999999999987653
No 281
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.45 E-value=8.8e-05 Score=62.81 Aligned_cols=36 Identities=11% Similarity=0.001 Sum_probs=31.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 18 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 18 VLHGIDLEVKPGEV--VAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred eeccceEEEcCCCE--EEEECCCCCCHHHHHHHHhcCC
Confidence 56667777888887 9999999999999999999765
No 282
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.44 E-value=8.2e-05 Score=60.81 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=32.3
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+.....|.. .+|.||+|+||||+.+.|..++.
T Consensus 16 ll~~vsl~~~pGev--~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 16 LLDGVSLDLRPGEV--LAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred eccCcceeccCCcE--EEEECCCCccHHHHHHHhhCccC
Confidence 45666777888887 99999999999999999999877
No 283
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.44 E-value=9.3e-05 Score=63.60 Aligned_cols=36 Identities=22% Similarity=0.127 Sum_probs=30.2
Q ss_pred CCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 46 NDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 46 ~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+++++.++..|.. +++.||+||||||+.+.+|....
T Consensus 18 ~~di~l~i~~Ge~--vaLlGpSGaGKsTlLRiIAGLe~ 53 (345)
T COG1118 18 LDDISLDIKSGEL--VALLGPSGAGKSTLLRIIAGLET 53 (345)
T ss_pred cccceeeecCCcE--EEEECCCCCcHHHHHHHHhCcCC
Confidence 3356677888887 99999999999999999998543
No 284
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.44 E-value=9.3e-05 Score=61.95 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=29.2
Q ss_pred CCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 47 DQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 47 ~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++.+..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 3 ~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 3 QDLNLSLKRGEV--LALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred cceeEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 345566778877 99999999999999999998654
No 285
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=7e-05 Score=62.81 Aligned_cols=36 Identities=17% Similarity=0.060 Sum_probs=30.8
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 24 il~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 24 VLHNVSFSIGEGEM--MAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred eEEeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhcCC
Confidence 56666777888876 9999999999999999999764
No 286
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.44 E-value=7.8e-05 Score=61.03 Aligned_cols=36 Identities=22% Similarity=0.140 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 16 il~~~s~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 16 LLQQISFHLPAGGL--LHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEeeeeEEECCCCE--EEEECCCCCCHHHHHHHHhcCC
Confidence 55667777888887 9999999999999999998754
No 287
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.44 E-value=7.1e-05 Score=60.93 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=29.8
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.+++.|....+|.. ++|.|++||||||+++.|+..
T Consensus 22 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 22 LLNNISGYVKPGTL--TALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eEEccEEEEeCCcE--EEEECCCCCCHHHHHHHHhCC
Confidence 55666777888877 999999999999999999863
No 288
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=8.3e-05 Score=62.70 Aligned_cols=36 Identities=17% Similarity=0.027 Sum_probs=30.7
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 17 il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 17 ALFDITLDCPQGET--LVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred eEeeeeeEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 45566677888887 9999999999999999998764
No 289
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.43 E-value=8.4e-05 Score=61.21 Aligned_cols=36 Identities=22% Similarity=0.155 Sum_probs=30.7
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 17 ~l~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 17 LFSGLSFTLAAGEA--LVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 45666777888887 9999999999999999998754
No 290
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.43 E-value=9.2e-05 Score=61.64 Aligned_cols=40 Identities=20% Similarity=0.010 Sum_probs=35.2
Q ss_pred cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
-..+++.|....+|.. |+|.|.+||||||+.+.|+..+..
T Consensus 40 ~~aL~disf~i~~Ge~--vGiiG~NGaGKSTLlkliaGi~~P 79 (249)
T COG1134 40 FWALKDISFEIYKGER--VGIIGHNGAGKSTLLKLIAGIYKP 79 (249)
T ss_pred EEEecCceEEEeCCCE--EEEECCCCCcHHHHHHHHhCccCC
Confidence 4577888889999988 999999999999999999987653
No 291
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.43 E-value=7.2e-05 Score=60.08 Aligned_cols=36 Identities=25% Similarity=0.147 Sum_probs=30.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+....+|.. ++|.|++||||||+++.|+..+
T Consensus 17 ~l~~i~~~i~~Ge~--~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 17 VLKNLSLELKQGEK--IALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred ceEEEEEEEcCCCE--EEEECCCCCCHHHHHHHHhccC
Confidence 45556677888887 9999999999999999998764
No 292
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=9.3e-05 Score=61.78 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 18 ~l~~isl~i~~G~~--~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 18 VLKDINFSIKPGET--VAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCcC
Confidence 45566677888877 99999999999999999987653
No 293
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.42 E-value=0.00012 Score=64.85 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
..+++|.||+||||||+++.|++.++.
T Consensus 78 r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345999999999999999999999876
No 294
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=97.42 E-value=0.0016 Score=63.05 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=26.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
.+|++.|.+|+||||+++.|+++++..++.
T Consensus 216 ~~~~~vglp~~GKStia~~L~~~l~~~~~~ 245 (664)
T PTZ00322 216 LIVIMVGLPGRGKTYVARQIQRYFQWNGLQ 245 (664)
T ss_pred eeEEecccCCCChhHHHHHHHHHHHhcCCC
Confidence 369999999999999999999999877654
No 295
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.42 E-value=9e-05 Score=61.85 Aligned_cols=37 Identities=22% Similarity=0.040 Sum_probs=32.0
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+++.+..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 36 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 36 WALKDVSFEVPRGER--IGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EEEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 367777788888887 9999999999999999998754
No 296
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.42 E-value=0.0001 Score=61.79 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=28.0
Q ss_pred CCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 48 QDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 48 ~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 3 ~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 3 GVNLTIQQGEF--ISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred ceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 34456777776 99999999999999999987653
No 297
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.42 E-value=8.4e-05 Score=61.15 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=30.3
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+....+|.. ++|.|++||||||+++.|+..+
T Consensus 15 ~l~~~~~~i~~G~~--~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 15 VLDDISLHVKKGEI--YGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred eEeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCc
Confidence 45566677888877 9999999999999999998754
No 298
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.42 E-value=8.4e-05 Score=61.62 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=30.9
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 15 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 15 ATLSNINIRIPTGQL--TMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred cceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhccC
Confidence 355666677888877 9999999999999999999765
No 299
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.0001 Score=60.79 Aligned_cols=35 Identities=20% Similarity=0.087 Sum_probs=28.8
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|....+| . ++|.|++||||||+++.|+..+
T Consensus 15 ~l~~vs~~i~~g-~--~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 15 ALDGVSLTLGPG-M--YGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EEcceeEEEcCC-c--EEEECCCCCCHHHHHHHHhCCC
Confidence 455666677776 4 9999999999999999998754
No 300
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.41 E-value=8.3e-05 Score=63.38 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=28.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+ ...+|.. ++|.|++||||||+++.|+..+.
T Consensus 16 ~l~~i~-~i~~Ge~--~~IvG~nGsGKSTLlk~l~Gl~~ 51 (255)
T cd03236 16 KLHRLP-VPREGQV--LGLVGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred hhhcCC-CCCCCCE--EEEECCCCCCHHHHHHHHhCCcC
Confidence 445555 3667776 99999999999999999998764
No 301
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.41 E-value=8.8e-05 Score=63.21 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=31.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 19 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 19 AVEDVNLNIEPRSV--TAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred eeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhccC
Confidence 45666677888887 9999999999999999999865
No 302
>PRK10908 cell division protein FtsE; Provisional
Probab=97.40 E-value=9.2e-05 Score=61.59 Aligned_cols=36 Identities=14% Similarity=0.039 Sum_probs=30.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 17 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 17 ALQGVTFHMRPGEM--AFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EEeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 45666677888887 9999999999999999998754
No 303
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=9.2e-05 Score=62.44 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=30.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 18 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 18 ILKDISVKFEGGAI--YTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 45566677888877 9999999999999999999865
No 304
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.40 E-value=9.5e-05 Score=59.61 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=30.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 15 ~l~~vs~~i~~G~~--~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 15 AVRDVSFEVRAGEI--VGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred eecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 34455567788877 99999999999999999998654
No 305
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.40 E-value=3.3e-05 Score=67.19 Aligned_cols=48 Identities=23% Similarity=0.178 Sum_probs=37.1
Q ss_pred HHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 34 ELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++...|++...++++.|..+.+|.. ++|.||+||||||+.+.|+..+.
T Consensus 9 ~l~k~~~~~~~~l~~vs~~i~~Gei--~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 9 NLTKKYGGDKTALDGVSFEVEPGEI--FGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred ceEEEeCCCCEEEeceeEEEcCCeE--EEEECCCCCCHHHHHHHHhCCcC
Confidence 3344454333467778888888876 99999999999999999998764
No 306
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.40 E-value=8.6e-05 Score=63.00 Aligned_cols=37 Identities=16% Similarity=0.049 Sum_probs=31.3
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 15 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 15 VLDGLNFSVAAGEK--VALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred EEeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 55666777888887 99999999999999999987653
No 307
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=9.7e-05 Score=63.33 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=31.9
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+++.+..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 35 ~il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 35 RAVNDISMDIEKHAV--TALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred eeeeceEEEEcCCCE--EEEECCCCCCHHHHHHHHHhcc
Confidence 356777778888887 9999999999999999999854
No 308
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00011 Score=58.62 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+..+.+|.. ++|.|++||||||+.+.|+..+.
T Consensus 17 ~l~~i~~~i~~G~~--~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 17 VLKDVSLTIKPGEK--VAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHHcCCC
Confidence 45556667888877 99999999999999999988654
No 309
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.0001 Score=62.60 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=31.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 19 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 19 AVKDVSMDFPENSV--TAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EEecceEEEcCCCE--EEEECCCCCCHHHHHHHHHhcc
Confidence 56667777888887 9999999999999999999865
No 310
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.0001 Score=62.52 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=31.7
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 19 ~l~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 19 VIKGVDLKIPQNGV--FALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred eeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhccCC
Confidence 56667777888887 99999999999999999998753
No 311
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.39 E-value=0.0001 Score=62.30 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 16 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 16 ALKNINLDIPKNQV--TALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred eecceeEEECCCCE--EEEECCCCCCHHHHHHHHhccC
Confidence 45566677888887 9999999999999999999765
No 312
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.39 E-value=0.00011 Score=60.96 Aligned_cols=36 Identities=17% Similarity=0.031 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 19 ~l~~i~~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 19 VLKNISFSIKPGEK--VGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred cccceEEEECCCCE--EEEECCCCCCHHHHHHHHHcCC
Confidence 56667777888877 9999999999999999998764
No 313
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.39 E-value=0.0001 Score=62.50 Aligned_cols=37 Identities=22% Similarity=0.056 Sum_probs=31.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 18 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 18 GCRDVSFDLYPGEV--LGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred EeecceEEEeCCcE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 45566677888887 99999999999999999998653
No 314
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.39 E-value=0.00011 Score=60.94 Aligned_cols=36 Identities=22% Similarity=0.096 Sum_probs=30.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+...
T Consensus 19 ~l~~i~~~i~~G~~--~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 19 ALDNVSLTIRAGEK--VAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCc
Confidence 45566677888887 9999999999999999998754
No 315
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.39 E-value=9.9e-05 Score=62.14 Aligned_cols=37 Identities=22% Similarity=0.149 Sum_probs=31.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|....+|.. ++|.|++||||||+++.|+..+.
T Consensus 16 il~~~s~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 16 VLHNIDLNIDQGEV--VVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred EeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 45666777888877 99999999999999999998653
No 316
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.39 E-value=0.0001 Score=58.98 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=30.3
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 17 ~l~~~~~~i~~Ge~--~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 17 VLRNVSFSIEPGES--LAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred ceeeeEEEECCCCE--EEEECCCCCCHHHHHHHHHhccC
Confidence 44555667778776 99999999999999999997653
No 317
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.39 E-value=9.5e-05 Score=58.57 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=30.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
++++.+....+|.. ++|.|++||||||+.+.|+..+
T Consensus 15 vl~~i~~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 15 ALDGVSLSVRRGEV--HALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 45556667888887 9999999999999999998754
No 318
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.38 E-value=9.5e-05 Score=63.09 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=31.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 27 il~~isl~i~~Ge~--~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 27 VLNQLDLHIPAGQF--VAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 55666677888877 99999999999999999998653
No 319
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.38 E-value=0.00014 Score=63.45 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=26.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
.++|+|.||+||||||++..|++.++...+
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~ii 33 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEII 33 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEE
Confidence 356999999999999999999999987644
No 320
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.0001 Score=63.25 Aligned_cols=37 Identities=19% Similarity=0.100 Sum_probs=31.3
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 16 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 16 VLKGLNLDFSLSPV--TGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHcCCCC
Confidence 56667777888877 99999999999999999987653
No 321
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.38 E-value=0.0001 Score=60.22 Aligned_cols=36 Identities=19% Similarity=0.119 Sum_probs=30.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 15 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 15 LFEGLSFTLNAGEA--LQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence 45566677888887 9999999999999999998765
No 322
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.38 E-value=0.00012 Score=59.89 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=30.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.+++.|..+.+|.. ++|.|++||||||+.+.|+..
T Consensus 15 ~l~~is~~i~~Ge~--~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 15 ILKGVNLTIKKGEV--HALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred eeeccceEECCCcE--EEEECCCCCCHHHHHHHHhCC
Confidence 56667778888887 999999999999999999875
No 323
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.38 E-value=0.00011 Score=60.28 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=31.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 16 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 16 LFSGLSFTLNAGEL--VQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred EEecceEEECCCcE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 45667777888877 99999999999999999987653
No 324
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=9.7e-05 Score=62.29 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=31.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 16 ~l~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 16 AVNNLNLEIAKGEF--LVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred EeeeeEEEECCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 45666777888887 99999999999999999987653
No 325
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.0001 Score=62.14 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=31.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 18 ~l~~~sl~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 18 VVEDVSLTVNSGEI--VGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred EEeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 55667777888887 99999999999999999998653
No 326
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.37 E-value=0.00011 Score=63.35 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=31.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 16 il~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~laG~~~ 52 (272)
T PRK13547 16 ILRDLSLRIEPGRV--TALLGRNGAGKSTLLKALAGDLT 52 (272)
T ss_pred EEecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 56667777888887 99999999999999999998653
No 327
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.37 E-value=0.00011 Score=61.76 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=31.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 18 ~l~~i~~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~~ 54 (238)
T cd03249 18 ILKGLSLTIPPGKT--VALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred ceeceEEEecCCCE--EEEEeCCCCCHHHHHHHHhccCC
Confidence 45566677888877 99999999999999999998753
No 328
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.37 E-value=0.00011 Score=61.70 Aligned_cols=37 Identities=19% Similarity=0.105 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+....+|.. ++|.|++||||||+++.|+..+.
T Consensus 17 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 17 ILDNISLRIKPGEV--VGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred ceeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCcC
Confidence 45566667788877 99999999999999999997653
No 329
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.37 E-value=0.00013 Score=59.97 Aligned_cols=36 Identities=22% Similarity=0.071 Sum_probs=30.7
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 23 ~l~~isl~i~~G~~--~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 23 VLKNVSFKVKAGEK--IGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred cccCceEEECCCCE--EEEECCCCCCHHHHHHHHhccc
Confidence 45666677888887 9999999999999999998764
No 330
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.37 E-value=0.00012 Score=61.01 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=31.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 23 il~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 23 VLKNVSLTVNAGEC--VALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred EEecceEEECCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 56667777888887 99999999999999999987653
No 331
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00013 Score=61.97 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=32.0
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 22 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 22 ALNNINIKILKNSI--TALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred eecceeeEEcCCCE--EEEECCCCCCHHHHHHHHhcccc
Confidence 56667778888887 99999999999999999998654
No 332
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00014 Score=59.99 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=30.8
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+.++..|.....|.. -+|.||+||||||++..|+..=+
T Consensus 18 eILkgvnL~v~~GEv--haiMGPNGsGKSTLa~~i~G~p~ 55 (251)
T COG0396 18 EILKGVNLTVKEGEV--HAIMGPNGSGKSTLAYTIMGHPK 55 (251)
T ss_pred hhhcCcceeEcCCcE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 345566667888877 99999999999999999987543
No 333
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.36 E-value=0.00011 Score=61.78 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=31.8
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 35 ~il~~vs~~i~~Ge~--~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 35 EALKGISFTIEKGEI--VGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred eeeeceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCc
Confidence 366777778888887 9999999999999999998754
No 334
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00017 Score=57.55 Aligned_cols=47 Identities=28% Similarity=0.262 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHH
Q psy16563 30 PEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVA 79 (259)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~ 79 (259)
-++.++.+.|. ..++++..|....+|.. |.|.|.+||||||+.+.+.
T Consensus 7 l~v~dlHK~~G-~~eVLKGvSL~A~~GdV--isIIGsSGSGKSTfLRCiN 53 (256)
T COG4598 7 LEVEDLHKRYG-EHEVLKGVSLQANAGDV--ISIIGSSGSGKSTFLRCIN 53 (256)
T ss_pred eehhHHHhhcc-cchhhcceeeecCCCCE--EEEecCCCCchhHHHHHHH
Confidence 35667777774 55788888888888876 9999999999999998873
No 335
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00011 Score=63.05 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=31.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 28 il~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 28 AVKNVFCDIPRGKV--TALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred EEcceEEEEcCCCE--EEEECCCCCCHHHHHHHHhccc
Confidence 56677778888887 9999999999999999999764
No 336
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.36 E-value=0.00013 Score=60.90 Aligned_cols=36 Identities=17% Similarity=0.066 Sum_probs=31.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 29 ~l~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 29 VLQDVSFTLHPGEV--TALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCc
Confidence 56667777888887 9999999999999999998765
No 337
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.36 E-value=0.00012 Score=62.59 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=31.8
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 26 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T TIGR02769 26 VLTNVSLSIEEGET--VGLLGRSGCGKSTLARLLLGLEK 62 (265)
T ss_pred EeeCceeEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 56677778888887 99999999999999999998653
No 338
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00011 Score=62.75 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=31.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 27 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 27 ALKNINLSIPENEV--TAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred eEEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhcc
Confidence 55666677888887 99999999999999999998653
No 339
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=8.8e-05 Score=60.89 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=31.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 22 il~~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 22 ILKDFSGVVKPGEM--VLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred eeeeEEEEECCCcE--EEEECCCCCCHHHHHHHhcccCC
Confidence 45566667888877 99999999999999999998754
No 340
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.00011 Score=61.54 Aligned_cols=36 Identities=19% Similarity=0.086 Sum_probs=30.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 16 ~l~~i~~~i~~Ge~--~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 16 VLKDVSFTIPAGKK--VAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhccc
Confidence 45566677888887 9999999999999999999765
No 341
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.36 E-value=0.00012 Score=60.03 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=31.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 20 il~~~s~~i~~G~~--~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 20 TLKDINLEVPKGEL--VAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred eeeeeeEEECCCCE--EEEECCCCCCHHHHHHHHhCcCC
Confidence 56667777888887 99999999999999999988653
No 342
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.36 E-value=0.00011 Score=62.72 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=31.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 21 il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 57 (258)
T PRK11701 21 GCRDVSFDLYPGEV--LGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred eeeeeeEEEeCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 45666677888887 99999999999999999998653
No 343
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.00012 Score=61.39 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=30.7
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+....+|.. ++|.|++||||||+++.|+..+.
T Consensus 17 ~l~~i~~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 17 VLRDISLDIPAGET--VALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred ceeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhcccc
Confidence 45556667788877 99999999999999999988653
No 344
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.00011 Score=61.76 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=32.8
Q ss_pred cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
...+++.|..+.+|.. ++|.|++||||||+++.|+.-+..
T Consensus 17 ~~~l~~v~~~i~~Ge~--~~i~G~nGsGKSTL~~~l~GLl~p 56 (235)
T COG1122 17 KAALKDVSLEIEKGER--VLLIGPNGSGKSTLLKLLNGLLKP 56 (235)
T ss_pred ceeeeeeEEEECCCCE--EEEECCCCCCHHHHHHHHcCcCcC
Confidence 3456667777888887 999999999999999999876543
No 345
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.35 E-value=0.00056 Score=58.69 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=28.5
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
...|+..+|+|+|+||+||||+...|...|-..
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~ 78 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRER 78 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHC
Confidence 455667789999999999999999999988654
No 346
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.35 E-value=9.8e-05 Score=57.28 Aligned_cols=36 Identities=25% Similarity=0.172 Sum_probs=29.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+....+|.. ++|.|++||||||+++.|+..+
T Consensus 15 ~l~~~~~~~~~Ge~--~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 15 LLKDISLTINPGDR--IGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEeeEEEECCCCE--EEEECCCCCCHHHHHHHHcCCC
Confidence 34455567788876 9999999999999999998764
No 347
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.35 E-value=0.00011 Score=64.36 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=31.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 22 ~l~~vsl~i~~Ge~--v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 22 ALDNVSVEINQGEF--IAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred ceeeeEEEEeCCCE--EEEECCCCCcHHHHHHHHhCCC
Confidence 56667778888887 9999999999999999999764
No 348
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.35 E-value=0.00012 Score=58.93 Aligned_cols=36 Identities=28% Similarity=0.203 Sum_probs=30.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+....+|.. ++|.|++||||||+++.|+..+
T Consensus 14 ~l~~~~~~i~~G~~--~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 14 VLDDLSLSIEAGEI--VGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred eEeeeEEEECCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 45556667788877 9999999999999999998754
No 349
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.35 E-value=0.00011 Score=63.01 Aligned_cols=37 Identities=19% Similarity=0.063 Sum_probs=31.8
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 25 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 25 TLLHPLSLTFPAGKV--TGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EEEeeeeeEEcCCCE--EEEECCCCCCHHHHHHHHcCCC
Confidence 356677778888887 9999999999999999999765
No 350
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.35 E-value=0.00012 Score=62.08 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=30.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..
T Consensus 20 ~l~~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 20 ALNSVSLDFYPNEI--TALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred eeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhcc
Confidence 55666677888887 999999999999999999875
No 351
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00012 Score=62.53 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=31.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 17 il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~ 53 (258)
T PRK13548 17 LLDDVSLTLRPGEV--VAILGPNGAGKSTLLRALSGELS 53 (258)
T ss_pred eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 56667777888887 99999999999999999998653
No 352
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.34 E-value=0.00013 Score=61.86 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=30.8
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+...
T Consensus 20 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 20 ALKGIDLDFNQNEI--TALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred EEecceEEEcCCCE--EEEECCCCCCHHHHHHHHhccc
Confidence 56667777888887 9999999999999999998753
No 353
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.34 E-value=0.00012 Score=61.95 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=30.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 18 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 18 ALKKINLDIEENQV--TALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred eeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhccc
Confidence 45566677888887 9999999999999999999753
No 354
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.34 E-value=0.00012 Score=62.02 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=30.8
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 18 ~l~~i~~~i~~Ge~--~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 18 AVKNVTMKIFKNQI--TAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred eEeeeeEeecCCCE--EEEECCCCCCHHHHHHHHhcccc
Confidence 45566677888887 99999999999999999997543
No 355
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.34 E-value=0.00014 Score=59.56 Aligned_cols=36 Identities=17% Similarity=0.030 Sum_probs=30.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+.+.|+..+
T Consensus 15 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 15 LFSGLSFTLAAGEA--LQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred eeccceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 45566677888887 9999999999999999998754
No 356
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.34 E-value=0.00012 Score=61.95 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=31.0
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 19 ~l~~~sl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 19 ALHGISLDFEEKEL--TALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhhcc
Confidence 55666677888887 9999999999999999999865
No 357
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00011 Score=63.33 Aligned_cols=37 Identities=16% Similarity=-0.004 Sum_probs=31.8
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 20 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 20 ALKGLSLSIPEGSK--TALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred eeeeEEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCC
Confidence 56667778888887 99999999999999999997653
No 358
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.33 E-value=0.00011 Score=63.59 Aligned_cols=38 Identities=26% Similarity=0.297 Sum_probs=32.4
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 21 ~~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~L~Gl~~ 58 (286)
T PRK13646 21 QAIHDVNTEFEQGKY--YAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred CceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 366777778888887 99999999999999999997643
No 359
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.33 E-value=0.00012 Score=62.80 Aligned_cols=37 Identities=22% Similarity=0.130 Sum_probs=31.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 24 ~l~~isl~i~~Ge~--~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 24 TLKDVSFNIPKGQW--TSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred ceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 45666677888887 99999999999999999998653
No 360
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.33 E-value=0.00057 Score=60.29 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=26.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 55 ~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
.+...+|+|+|++||||||++..|...+...
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3446679999999999999999998887653
No 361
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.33 E-value=0.00012 Score=63.85 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=31.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 19 ~l~~vsl~i~~Ge~--~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 19 VVNDLSFTIARGEC--FGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EEcceeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence 56677778888887 9999999999999999999864
No 362
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.33 E-value=0.00013 Score=61.85 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=30.3
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..
T Consensus 22 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 22 ILKGLNLSINKGEI--HAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred eeecceeEEcCCcE--EEEECCCCCCHHHHHHHHcCC
Confidence 56667777888887 999999999999999999874
No 363
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.33 E-value=0.00012 Score=63.88 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=31.3
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 8 ~l~~vs~~i~~Ge~--~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 8 AVDGVNFKVREGEV--FGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred EEeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 45666777888877 99999999999999999998653
No 364
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.33 E-value=0.00011 Score=63.32 Aligned_cols=36 Identities=25% Similarity=0.188 Sum_probs=30.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 22 ~l~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 22 ALFDVNLTIEDGSY--TAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred eeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence 45566677888877 9999999999999999999865
No 365
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.33 E-value=0.00015 Score=62.04 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=32.0
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+++.+..+.+|.. ++|.|++||||||+++.|+..++
T Consensus 24 ~il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 61 (264)
T PRK14243 24 LAVKNVWLDIPKNQI--TAFIGPSGCGKSTILRCFNRLND 61 (264)
T ss_pred EEeecceEEEcCCCE--EEEECCCCCCHHHHHHHHHhhhc
Confidence 356677778888887 99999999999999999997543
No 366
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.00011 Score=62.98 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=32.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 34 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 34 ALFDVDLDIPEKTV--TAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred EEEEEEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhcc
Confidence 56667778888887 99999999999999999998763
No 367
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.00012 Score=62.78 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=31.9
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 34 ~il~~vsl~i~~Ge~--~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 34 EAIKGIDMQFEKNKI--TALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred eeEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhcc
Confidence 356667778888887 9999999999999999999865
No 368
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.00015 Score=61.40 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=31.9
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 18 ~~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 18 QAVKNVNLDVQRGTV--NALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred EeeccceEEEcCCCE--EEEECCCCCCHHHHHHHHhccC
Confidence 356677777888887 9999999999999999999875
No 369
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=97.32 E-value=0.0046 Score=48.42 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=36.6
Q ss_pred CCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHH--HHHHHHhc---C-CCCeEEEeCCCCCHhhHHHHHHH
Q psy16563 175 KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL--LTTIYRNM---N-NPELVFVDNSEKSVHESSNDIVE 247 (259)
Q Consensus 175 ~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~--~~~~y~~~---~-~~~~~vID~s~~~~eev~~~I~~ 247 (259)
..++.|||+|+++++.+|-.+..........++.-...... ..+..++. . .+.-++||+++.+++++++.|.+
T Consensus 79 dA~~KifLtAs~e~RA~RR~~e~~~~g~~~~~e~v~~~i~~RD~~D~~R~~aPL~~a~DAi~IDts~lti~evv~~il~ 157 (157)
T PF02224_consen 79 DADLKIFLTASPEVRARRRYKELQEKGKKVSYEEVLEDIKERDERDSNREVAPLKKAEDAIVIDTSNLTIEEVVEKILE 157 (157)
T ss_dssp T-SEEEEEE--HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHCTSSS-SS--TTSEEEETTTS-HHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhChhhccCccCCCccCCCeEEEECCCCCHHHHHHHHhC
Confidence 35789999999999988864432110011111111111111 11111111 1 12469999999999999998864
No 370
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.32 E-value=0.00014 Score=60.16 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 26 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 26 VFGPLDFHVDAGEA--LLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred eeecceEEECCCCE--EEEEcCCCCCHHHHHHHHhCCC
Confidence 55667777888887 9999999999999999998764
No 371
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.32 E-value=0.00011 Score=62.44 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=30.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 19 vl~~vs~~i~~Ge~--~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 19 VLSDVSLELKPGKI--LTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEEeEEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence 45566677888887 9999999999999999999865
No 372
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.31 E-value=0.00012 Score=64.72 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=33.2
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 21 ~~l~~vsl~i~~Ge~--~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 21 RAVDRISYSVKQGEV--VGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred EEEeeeEEEECCCCE--EEEECCCCChHHHHHHHHHcCCC
Confidence 357778888999887 99999999999999999998764
No 373
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.31 E-value=0.00011 Score=63.14 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=30.7
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 22 il~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 22 ALRDASFTVPGGSI--AALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred EEEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 55666777888877 9999999999999999998764
No 374
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.31 E-value=0.00015 Score=61.36 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=31.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 18 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 18 ALKSINLPIPARQV--TALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred eeecceEEecCCCE--EEEECCCCCCHHHHHHHHHhhcc
Confidence 56667777888887 99999999999999999998654
No 375
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.31 E-value=0.00013 Score=61.69 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=31.5
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+++.+....+|.. ++|.|++||||||+++.|+..+
T Consensus 16 ~~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 16 QALFDINMQIEQNKI--TALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred eeeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhccc
Confidence 356667777888887 9999999999999999999864
No 376
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.31 E-value=0.00015 Score=62.22 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=31.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 28 ~l~~vsl~i~~Ge~--~~i~G~NGsGKSTLl~~l~Gl~~ 64 (267)
T PRK15112 28 AVKPLSFTLREGQT--LAIIGENGSGKSTLAKMLAGMIE 64 (267)
T ss_pred eeeeeeEEecCCCE--EEEEcCCCCCHHHHHHHHhCCCC
Confidence 56667778888887 99999999999999999998653
No 377
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.31 E-value=0.00013 Score=61.87 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=30.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+...
T Consensus 21 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 21 ALYDITISIPKNRV--TALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred eeeeeEEEECCCcE--EEEECCCCCCHHHHHHHHhccc
Confidence 56666777888887 9999999999999999999653
No 378
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.31 E-value=0.00012 Score=62.19 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=31.0
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 20 ~l~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 20 AVNNVNLEVREQEI--VSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred EEEeeeeEEcCCeE--EEEECCCCCCHHHHHHHHhCCcC
Confidence 45566677888877 99999999999999999998653
No 379
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.31 E-value=0.00013 Score=65.13 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=31.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|....+|.+ ++|.|++||||||+++.|+....
T Consensus 21 ~l~~isl~i~~Ge~--~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 21 VIDNLNLTIKQGTM--VTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHHCCCC
Confidence 45566677888887 99999999999999999998653
No 380
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.30 E-value=0.00013 Score=65.12 Aligned_cols=37 Identities=30% Similarity=0.313 Sum_probs=31.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.+ ++|.|++||||||+.+.|+....
T Consensus 19 ~l~~vsl~i~~Ge~--~~llG~sGsGKSTLLr~iaGl~~ 55 (356)
T PRK11650 19 VIKGIDLDVADGEF--IVLVGPSGCGKSTLLRMVAGLER 55 (356)
T ss_pred EEeeeeEEEcCCCE--EEEECCCCCcHHHHHHHHHCCCC
Confidence 45566677888887 99999999999999999998643
No 381
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.30 E-value=0.00011 Score=62.96 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=31.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 22 il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 22 IFDNISLTVPRGKI--TAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 45666777888887 99999999999999999997653
No 382
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.30 E-value=0.00011 Score=63.48 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=31.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 22 ~l~~v~l~i~~Ge~--~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 22 ALNDISFSIPRGSW--TALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred ceeeEEEEEcCCCE--EEEECCCCCcHHHHHHHHhccc
Confidence 55666677888887 9999999999999999999876
No 383
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.30 E-value=0.00013 Score=63.05 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=31.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+.+.|+..+
T Consensus 22 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 22 TLNDVSFHVKQGEW--LSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred eeeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhcCC
Confidence 56667778888887 9999999999999999999865
No 384
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.30 E-value=0.00012 Score=63.37 Aligned_cols=37 Identities=27% Similarity=0.270 Sum_probs=32.0
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 22 ~l~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13637 22 ALDNVNIEIEDGEF--VGLIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCC
Confidence 56667778888887 99999999999999999997653
No 385
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.30 E-value=0.00015 Score=61.32 Aligned_cols=36 Identities=22% Similarity=0.081 Sum_probs=30.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 16 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 16 ILRGLNLEVRPGEV--HAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred eeecceeEEcCCCE--EEEECCCCCCHHHHHHHHcCCc
Confidence 45566677888877 9999999999999999999863
No 386
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.30 E-value=0.00016 Score=58.92 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=31.2
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+++.+..+.+|.. ++|.|++||||||+.+.|+..+
T Consensus 23 ~~l~~~~~~i~~Ge~--~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 23 QLLKNVSGKAKPGEL--TAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cceecceEEEcCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence 356666677888877 9999999999999999998765
No 387
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.0003 Score=62.57 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=37.2
Q ss_pred cCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCC--CchHHHHHHhcc
Q psy16563 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPP--SSIMSLREKFDA 103 (259)
Q Consensus 54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~--~~~~~~~~~~~~ 103 (259)
..+..+-.++-||||+||||+|+.||...+..+..... .....+++.+.+
T Consensus 44 ~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 44 EAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEE 95 (436)
T ss_pred hcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHH
Confidence 33445558899999999999999999999988765433 234667766654
No 388
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.29 E-value=0.00015 Score=68.88 Aligned_cols=51 Identities=16% Similarity=0.104 Sum_probs=41.5
Q ss_pred HHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 32 VEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.+++.-.|++...++++.|..+.+|.. ++|.|++||||||++++|.+.+..
T Consensus 331 f~~vsf~y~~~~~vl~~is~~i~~Ge~--vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 331 FENVSFSYPGKKPVLKDISFSIEPGEK--VAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred EEEEEEEcCCCCccccCceEEEcCCCE--EEEECCCCCCHHHHHHHHhccCCC
Confidence 444555665545677888888999888 999999999999999999998775
No 389
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.00014 Score=62.01 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=31.0
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 27 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 27 ALKNVSMQIPKNSV--TALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCC
Confidence 56667777888887 9999999999999999999754
No 390
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.29 E-value=0.00014 Score=63.13 Aligned_cols=36 Identities=22% Similarity=0.115 Sum_probs=31.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 21 ~l~~vsl~i~~Ge~--v~i~G~nGsGKSTLl~~l~Gl~ 56 (288)
T PRK13643 21 ALFDIDLEVKKGSY--TALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred ceeeeEEEEcCCCE--EEEECCCCChHHHHHHHHhcCC
Confidence 56677778888887 9999999999999999999764
No 391
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.29 E-value=0.00013 Score=63.29 Aligned_cols=37 Identities=22% Similarity=0.121 Sum_probs=31.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 26 il~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~ 62 (289)
T PRK13645 26 ALNNTSLTFKKNKV--TCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred eeeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 56667777888877 99999999999999999998653
No 392
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.00016 Score=61.33 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=30.8
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 19 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 19 ALNDINLPIYENKI--TALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred eeeceeEEEcCCCE--EEEECCCCCCHHHHHHHHHhcc
Confidence 45666677888887 9999999999999999999764
No 393
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.00014 Score=62.44 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=36.4
Q ss_pred HHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 32 VEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++...|+. ...+++.+..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 27 ~~~l~~~~~~-~~il~~vsl~i~~Ge~--~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 27 TQNLNLWYGE-DHALKNINLDIHENEV--TAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred EeeeEEEECC-cceeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhcc
Confidence 3444434432 2356667777888887 99999999999999999998753
No 394
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.29 E-value=0.00016 Score=61.52 Aligned_cols=37 Identities=22% Similarity=0.112 Sum_probs=31.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 18 il~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~ 54 (254)
T PRK10418 18 LVHGVSLTLQRGRV--LALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred eecceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 45566677888887 99999999999999999988653
No 395
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.28 E-value=0.00016 Score=61.81 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=31.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 19 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 19 ALHAVDLNIHHGEM--VALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred EEecceEEEcCCcE--EEEECCCCCCHHHHHHHHhccCC
Confidence 45666777888887 99999999999999999997653
No 396
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.28 E-value=0.00014 Score=61.62 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=29.7
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.+++.|....+|.. ++|.|++||||||+++.|+..
T Consensus 18 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 18 ALKGISMEIEEKSV--VAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred EEeeeeEEEeCCCE--EEEECCCCCCHHHHHHHHhhh
Confidence 45556667888877 999999999999999999875
No 397
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.28 E-value=0.00011 Score=62.92 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=33.4
Q ss_pred hccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 41 RINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.....+++.+..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 35 ~~~~il~~is~~i~~Ge~--~~liG~NGsGKSTLlk~L~Gl~~ 75 (264)
T PRK13546 35 KTFFALDDISLKAYEGDV--IGLVGINGSGKSTLSNIIGGSLS 75 (264)
T ss_pred CceEEEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCcC
Confidence 334456667778888887 99999999999999999998653
No 398
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.28 E-value=0.00015 Score=61.43 Aligned_cols=36 Identities=22% Similarity=0.130 Sum_probs=30.8
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+...
T Consensus 20 ~l~~is~~i~~Ge~--~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 20 ILFDINLDIYKREV--TAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhc
Confidence 45566677888887 9999999999999999999864
No 399
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.28 E-value=0.00016 Score=61.93 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=31.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 22 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~ 58 (265)
T PRK10253 22 VAENLTVEIPDGHF--TAIIGPNGCGKSTLLRTLSRLMT 58 (265)
T ss_pred EeeecceEECCCCE--EEEECCCCCCHHHHHHHHcCCCC
Confidence 56677778888887 99999999999999999988653
No 400
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.00016 Score=61.60 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=31.8
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 22 il~~isl~i~~Ge~--~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 22 AIEGISMDIYRNKV--TAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred eecceEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhcC
Confidence 55667777888887 99999999999999999998654
No 401
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.27 E-value=0.00016 Score=60.97 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=31.0
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+.+.|+..+
T Consensus 17 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 17 ALNDLSLYVDPGEL--RVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence 56667777888887 9999999999999999999764
No 402
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.27 E-value=0.00016 Score=62.07 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=31.3
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 26 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 62 (268)
T PRK10419 26 TVLNNVSLSLKSGET--VALLGRSGCGKSTLARLLVGLE 62 (268)
T ss_pred eeEeceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 356667778888877 9999999999999999998754
No 403
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.27 E-value=0.00014 Score=61.16 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 20 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 20 ALHEVSLHINQGEI--VTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred eeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHcCCC
Confidence 55666777888887 9999999999999999998754
No 404
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.00014 Score=65.30 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=30.7
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 18 vl~~vsl~i~~Ge~--~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 18 ISKDINLDIHEGEF--VVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhCCC
Confidence 45566677888877 9999999999999999999865
No 405
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.00017 Score=61.19 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=31.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 19 il~~~s~~i~~G~~--~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 19 VLKNINMDFPERQI--TAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred EecceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcccC
Confidence 45666677888887 99999999999999999998654
No 406
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.00015 Score=64.14 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=32.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 22 ~l~~vsl~i~~Ge~--~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 22 AVDRVSMTLTEGEI--RGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred EEeeeEEEECCCCE--EEEECCCCCCHHHHHHHHHccCC
Confidence 56777788899887 99999999999999999998763
No 407
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.27 E-value=0.00016 Score=62.18 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=31.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 24 il~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 24 ALKNVSFEINEGEY--VAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred ceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 55666677888877 99999999999999999998753
No 408
>KOG2004|consensus
Probab=97.27 E-value=0.00039 Score=65.87 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=46.5
Q ss_pred cHHHHHHHHHh-hc--cCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563 13 SLVSVLSILKS-AQ--YSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKST 89 (259)
Q Consensus 13 ~~~~~~~~l~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~ 89 (259)
+...++++|+. |. .|++.++.++...-.-. ... +.+|+++.||||.|||++++.+|+.|+-.+++.
T Consensus 401 dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLr---------gs~--qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRf 469 (906)
T KOG2004|consen 401 DLARAKEILDEDHYGMEDVKERILEFIAVGKLR---------GSV--QGKILCFVGPPGVGKTSIAKSIARALNRKFFRF 469 (906)
T ss_pred hHHHHHHhhcccccchHHHHHHHHHHHHHHhhc---------ccC--CCcEEEEeCCCCCCcccHHHHHHHHhCCceEEE
Confidence 45667777777 22 55666666555432211 122 256799999999999999999999999888765
Q ss_pred C
Q psy16563 90 P 90 (259)
Q Consensus 90 p 90 (259)
.
T Consensus 470 S 470 (906)
T KOG2004|consen 470 S 470 (906)
T ss_pred e
Confidence 3
No 409
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.27 E-value=0.00018 Score=59.35 Aligned_cols=33 Identities=18% Similarity=0.041 Sum_probs=28.0
Q ss_pred CCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 48 QDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 48 ~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
+.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 16 ~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 16 HFDLTFAQGEI--TAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred ceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 44566778876 9999999999999999998764
No 410
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.27 E-value=0.00015 Score=62.83 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=32.0
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+..+.+|.. ++|.|++||||||+.+.|+..+.
T Consensus 22 ~l~~vsl~i~~Ge~--~~iiG~NGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13641 22 GLDNISFELEEGSF--VALVGHTGSGKSTLMQHFNALLK 58 (287)
T ss_pred ceeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 56677778888887 99999999999999999997643
No 411
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.26 E-value=0.00017 Score=61.10 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=32.7
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
...++.|..+.+|.. ++|.|.+||||||+++.|.+...
T Consensus 27 ~avd~Vsf~i~~ge~--~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 27 KAVDGVSFSIKEGET--LGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred EEecceeEEEcCCCE--EEEEecCCCCHHHHHHHHHcCcC
Confidence 345667788899888 99999999999999999988665
No 412
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.26 E-value=0.00016 Score=60.11 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=30.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 15 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 15 AVNNISLTVPKNSV--YGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EEeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence 45566667788877 9999999999999999999865
No 413
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.00027 Score=55.23 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=24.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
+-|+|+|+||+||||++..+++.+...
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 349999999999999999999998765
No 414
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.25 E-value=0.00015 Score=64.41 Aligned_cols=38 Identities=18% Similarity=0.050 Sum_probs=32.8
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+++.|..+.+|.. ++|.|++||||||+++.|+....
T Consensus 19 ~~L~~vsl~i~~Gei--~gIiG~sGaGKSTLlr~I~gl~~ 56 (343)
T TIGR02314 19 QALNNVSLHVPAGQI--YGVIGASGAGKSTLIRCVNLLER 56 (343)
T ss_pred EEEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 467777788888887 99999999999999999988654
No 415
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.25 E-value=0.00014 Score=64.67 Aligned_cols=37 Identities=16% Similarity=0.035 Sum_probs=31.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 20 il~~vsl~i~~Gei--~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 20 ALNNVSLHIPAGEI--FGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred EEEeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCC
Confidence 56667778888887 99999999999999999998653
No 416
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.25 E-value=0.00015 Score=62.97 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=32.0
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 22 ~L~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 58 (290)
T PRK13634 22 ALYDVNVSIPSGSY--VAIIGHTGSGKSTLLQHLNGLLQ 58 (290)
T ss_pred ceeeEEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCC
Confidence 56677778888887 99999999999999999987643
No 417
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.25 E-value=0.00074 Score=57.69 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
-++|.||+||||||+|+.+++.+.
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999999874
No 418
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.24 E-value=0.00015 Score=70.70 Aligned_cols=44 Identities=16% Similarity=0.099 Sum_probs=36.1
Q ss_pred HhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 38 IYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.|+....++++.|..+.+|.. |+|.|++||||||+++.|+..+.
T Consensus 482 ~y~~~~~iL~~isl~i~~G~~--vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 482 SYGYGSNILSDISLTIKMNSK--TTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred EcCCCCcceeceeEEECCCCE--EEEECCCCCCHHHHHHHHhccCC
Confidence 444334567788888888888 99999999999999999998765
No 419
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.24 E-value=0.00017 Score=62.02 Aligned_cols=36 Identities=25% Similarity=0.231 Sum_probs=31.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 35 ~l~~vs~~i~~Ge~--~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 35 ALVDVHLKIPAKKI--IAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred EEeeeeeEEcCCCE--EEEECCCCCCHHHHHHHHhccc
Confidence 56667778888887 9999999999999999999754
No 420
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.24 E-value=0.00017 Score=62.15 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=31.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+.+.|+..+.
T Consensus 17 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 53 (274)
T PRK13644 17 ALENINLVIKKGEY--IGIIGKNGSGKSTLALHLNGLLR 53 (274)
T ss_pred eeeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 56677778888887 99999999999999999998653
No 421
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.24 E-value=0.00017 Score=62.34 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=31.7
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 22 ~l~~vsl~i~~Ge~--~~i~G~nGaGKSTLl~~i~G~~~ 58 (279)
T PRK13635 22 ALKDVSFSVYEGEW--VAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred ceeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCC
Confidence 56667778888887 99999999999999999997653
No 422
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.24 E-value=0.00016 Score=61.45 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=31.8
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 16 il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~ 52 (256)
T TIGR03873 16 IVDGVDVTAPPGSL--TGLLGPNGSGKSTLLRLLAGALR 52 (256)
T ss_pred EEeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHcCCCC
Confidence 56677777888887 99999999999999999988653
No 423
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.23 E-value=0.00037 Score=52.46 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=24.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcc-cccCCC
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKAS-LKSTPP 91 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~-~~~~p~ 91 (259)
+|++.|.-||||||+++.+++.+|.. .+.+|.
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPT 49 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARALGIDEEVTSPT 49 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT--S----TT
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCC
Confidence 49999999999999999999999875 344444
No 424
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.23 E-value=0.00018 Score=60.91 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=24.4
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 22 i~~Ge~--~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 22 ISESEV--IGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred cCCCCE--EEEECCCCCCHHHHHHHHhCCCc
Confidence 445555 99999999999999999998653
No 425
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.23 E-value=0.00033 Score=54.15 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=24.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
|+|.|.|+.||||||+++.|...+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~ 27 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR 27 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc
Confidence 579999999999999999999998754
No 426
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.23 E-value=0.00018 Score=60.94 Aligned_cols=36 Identities=22% Similarity=0.153 Sum_probs=30.0
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 11 ~l~~vsl~i~~Gei--~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 11 RLGPLSAEVRAGEI--LHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred eecceEEEEcCCCE--EEEECCCCCCHHHHHHHHcCCC
Confidence 34556667888876 9999999999999999998754
No 427
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.23 E-value=0.00016 Score=62.31 Aligned_cols=37 Identities=22% Similarity=0.194 Sum_probs=31.7
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 19 ~l~~vsl~i~~Ge~--~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 19 ALNNINFIAPRNSR--IAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred eeeEeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 56667778888887 99999999999999999998653
No 428
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.23 E-value=0.00015 Score=64.71 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=31.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 17 ~l~~isl~i~~Ge~--~~llGpsGsGKSTLLr~IaGl~~ 53 (353)
T PRK10851 17 VLNDISLDIPSGQM--VALLGPSGSGKTTLLRIIAGLEH 53 (353)
T ss_pred EEEEeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 45566677888887 99999999999999999998653
No 429
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.23 E-value=0.00018 Score=61.25 Aligned_cols=37 Identities=22% Similarity=0.091 Sum_probs=31.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 20 ~l~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 20 VLKGVSLQANAGDV--ISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 45666677888887 99999999999999999998653
No 430
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.23 E-value=0.00018 Score=60.51 Aligned_cols=36 Identities=19% Similarity=0.119 Sum_probs=30.8
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+.+.|+..+
T Consensus 15 il~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 15 ALDDVNLEVPTGSL--VALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred eeeeEEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCC
Confidence 55666677888887 9999999999999999999764
No 431
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.22 E-value=0.00018 Score=62.06 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=31.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++.+..+.+|.. ++|.|++||||||+.+.|+..+.
T Consensus 25 vl~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~ 61 (280)
T PRK13633 25 ALDDVNLEVKKGEF--LVILGRNGSGKSTIAKHMNALLI 61 (280)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 66677778888887 99999999999999999997644
No 432
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.22 E-value=0.00017 Score=63.45 Aligned_cols=38 Identities=21% Similarity=0.125 Sum_probs=32.7
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 40 ~~L~~vsl~i~~Ge~--~~I~G~nGsGKSTLl~~L~Gl~~ 77 (320)
T PRK13631 40 VALNNISYTFEKNKI--YFIIGNSGSGKSTLVTHFNGLIK 77 (320)
T ss_pred cceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 367777788888887 99999999999999999998653
No 433
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.22 E-value=0.0021 Score=48.38 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=43.2
Q ss_pred ccccHHHHHHHHHhhccCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 10 QYPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
|-.+.....+.|+..-..+--..+.+.+++.+--. .....++-++.+-|++|+|||.++++||+.+=.
T Consensus 12 i~~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~-------~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~ 79 (127)
T PF06309_consen 12 IKYNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLA-------NPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYK 79 (127)
T ss_pred CCCCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHc-------CCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHh
Confidence 34566677777777444444444444454443211 123344556889999999999999999998533
No 434
>PLN02796 D-glycerate 3-kinase
Probab=97.22 E-value=0.00029 Score=62.10 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=24.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+.+|+|.|++||||||+++.|...+..
T Consensus 100 pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 100 PLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 457999999999999999999998864
No 435
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.22 E-value=0.00017 Score=64.85 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=31.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+..+.+|.+ ++|.|++||||||+.+.|+..+.
T Consensus 29 ~l~~vsl~i~~Ge~--~~LlGpsGsGKSTLLr~IaGl~~ 65 (375)
T PRK09452 29 VISNLDLTINNGEF--LTLLGPSGCGKTTVLRLIAGFET 65 (375)
T ss_pred EEeeeEEEEeCCCE--EEEECCCCCcHHHHHHHHhCCCC
Confidence 45566677888887 99999999999999999998643
No 436
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.21 E-value=0.00032 Score=56.05 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=24.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
++|.|.|++||||||+|..++..++..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~ 28 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQ 28 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCC
Confidence 359999999999999999999987754
No 437
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.21 E-value=0.00019 Score=63.48 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=32.5
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 29 ~~l~~vsl~i~~Ge~--~~IvG~sGsGKSTLl~~l~gl~~ 66 (327)
T PRK11308 29 KALDGVSFTLERGKT--LAVVGESGCGKSTLARLLTMIET 66 (327)
T ss_pred eEEeeeEEEECCCCE--EEEECCCCCcHHHHHHHHHcCCC
Confidence 356677788888887 99999999999999999988653
No 438
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.21 E-value=0.00019 Score=61.01 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=30.7
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 17 il~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~ 52 (255)
T PRK11231 17 ILNDLSLSLPTGKI--TALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred EEeeeeeEEcCCcE--EEEECCCCCCHHHHHHHHhCCc
Confidence 56666777888877 9999999999999999998754
No 439
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.21 E-value=0.00024 Score=56.26 Aligned_cols=48 Identities=21% Similarity=0.112 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhc---cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHH
Q psy16563 31 EVEELLNIYSRI---NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 31 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~ 80 (259)
+++.+....+.. -.++++.+....+|.. |+|.|++||||||+...||.
T Consensus 8 ~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~--vaiVG~SGSGKSTLl~vlAG 58 (228)
T COG4181 8 EVHHLSKTVGQGEGELSILKGVELVVKRGET--VAIVGPSGSGKSTLLAVLAG 58 (228)
T ss_pred ehhhhhhhhcCCCcceeEeecceEEecCCce--EEEEcCCCCcHHhHHHHHhc
Confidence 344444444332 3355666677888888 99999999999999999986
No 440
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.21 E-value=0.0002 Score=61.69 Aligned_cols=48 Identities=21% Similarity=0.102 Sum_probs=36.2
Q ss_pred HHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 33 EELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+++...|+. ...+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 25 ~nl~~~~~~-~~il~~vs~~i~~Ge~--~~I~G~nGsGKSTLl~~l~Gl~~ 72 (276)
T PRK14271 25 VNLTLGFAG-KTVLDQVSMGFPARAV--TSLMGPTGSGKTTFLRTLNRMND 72 (276)
T ss_pred eeEEEEECC-EEEeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhccCC
Confidence 344444543 2356677778888887 99999999999999999987653
No 441
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.21 E-value=0.00021 Score=58.19 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=27.5
Q ss_pred CCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 49 DSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 49 ~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 19 vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 19 LSITFLPSAI--TYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EEEEEcCCcE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 4456777776 99999999999999999988653
No 442
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.21 E-value=0.00019 Score=62.16 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=32.0
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+++.+..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 53 ~il~~is~~i~~Ge~--~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 53 QALDDVSMDIPENQV--TAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred eeEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhccC
Confidence 356777778888887 9999999999999999999765
No 443
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.20 E-value=0.00025 Score=57.00 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=25.4
Q ss_pred cccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
...+|.. ++|.|++||||||+++.|+..+.
T Consensus 21 ~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 21 VVKEGEV--IGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred EECCCCE--EEEECCCCChHHHHHHHHHcCCC
Confidence 4566666 99999999999999999988653
No 444
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.20 E-value=0.00025 Score=58.97 Aligned_cols=52 Identities=19% Similarity=0.115 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 29 LPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+-+++.+...+. ...++++.+....+|.. .+|.|++||||||+.+.+...+.
T Consensus 8 ~I~vr~v~~~fG-~~~Ild~v~l~V~~Gei--~~iiGgSGsGKStlLr~I~Gll~ 59 (263)
T COG1127 8 LIEVRGVTKSFG-DRVILDGVDLDVPRGEI--LAILGGSGSGKSTLLRLILGLLR 59 (263)
T ss_pred eEEEeeeeeecC-CEEEecCceeeecCCcE--EEEECCCCcCHHHHHHHHhccCC
Confidence 445556666663 34578888888999887 99999999999999999987654
No 445
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.20 E-value=0.00017 Score=64.31 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=30.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+..+.+|.. ++|.||+||||||+.+.|+....
T Consensus 19 ~l~~vs~~i~~Ge~--~~l~GpsGsGKSTLLr~iaGl~~ 55 (353)
T TIGR03265 19 ALKDISLSVKKGEF--VCLLGPSGCGKTTLLRIIAGLER 55 (353)
T ss_pred EEEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHCCCC
Confidence 34556667778877 99999999999999999998643
No 446
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.00018 Score=61.91 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=31.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 17 ~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~i~Gl~ 52 (275)
T PRK13639 17 ALKGINFKAEKGEM--VALLGPNGAGKSTLFLHFNGIL 52 (275)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 45666777888887 9999999999999999998765
No 447
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.20 E-value=0.00057 Score=63.88 Aligned_cols=29 Identities=31% Similarity=0.667 Sum_probs=25.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
.+++|.||+||||||.++.||+.++..+.
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 36999999999999999999999997643
No 448
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.20 E-value=0.00018 Score=62.29 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=30.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..
T Consensus 54 il~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 54 AVKKVNADILSKYV--TAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcc
Confidence 56677777888887 999999999999999999874
No 449
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.20 E-value=0.00021 Score=62.51 Aligned_cols=38 Identities=18% Similarity=0.057 Sum_probs=32.2
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+++.|..+.+|.. ++|.||+||||||+.+.|+..+.
T Consensus 21 ~~l~~vsl~i~~Gei--~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 21 LVVDGLSFHVQRGEC--FGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred EEEecceEEEeCCcE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 356677778888886 99999999999999999998653
No 450
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.20 E-value=0.00025 Score=59.26 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=25.8
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHH
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTS 75 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~ 75 (259)
..+++.|....+|.. ++|.|++||||||++
T Consensus 9 ~~l~~vsl~i~~Ge~--~~l~G~sGsGKSTL~ 38 (226)
T cd03270 9 HNLKNVDVDIPRNKL--VVITGVSGSGKSSLA 38 (226)
T ss_pred hccccceeecCCCcE--EEEEcCCCCCHHHHH
Confidence 355667778898887 999999999999996
No 451
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.20 E-value=0.00018 Score=68.57 Aligned_cols=45 Identities=18% Similarity=0.153 Sum_probs=36.3
Q ss_pred HhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 38 IYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.|+.....+++.+..+.+|.. |+|.|++||||||+++.|...+..
T Consensus 349 ~y~~~~~il~~i~l~i~~Ge~--iaIvG~SGsGKSTLl~lL~gl~~p 393 (592)
T PRK10790 349 AYRDDNLVLQNINLSVPSRGF--VALVGHTGSGKSTLASLLMGYYPL 393 (592)
T ss_pred EeCCCCceeeceeEEEcCCCE--EEEECCCCCCHHHHHHHHhcccCC
Confidence 443333467778888888888 999999999999999999987754
No 452
>KOG0055|consensus
Probab=97.19 E-value=7.3e-05 Score=74.73 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhhhcc--ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 29 LPEVEELLNIYSRIN--ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 29 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
..+.+++..+|+.++ .++++.|.....|++ ++|.|++||||||+..+|.+.+...
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~--valVG~SGsGKST~i~LL~RfydP~ 406 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQT--VALVGPSGSGKSTLIQLLARFYDPT 406 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCE--EEEECCCCCCHHHHHHHHHHhcCCC
Confidence 344556666888887 577778888898888 9999999999999999999987643
No 453
>KOG0730|consensus
Probab=97.19 E-value=0.00092 Score=62.79 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=29.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccccCCCC
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS 92 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~ 92 (259)
|.+.||+||||||+|+.+|..-+..++..++.
T Consensus 471 VLlyGPPGC~KT~lAkalAne~~~nFlsvkgp 502 (693)
T KOG0730|consen 471 VLLYGPPGCGKTLLAKALANEAGMNFLSVKGP 502 (693)
T ss_pred EEEECCCCcchHHHHHHHhhhhcCCeeeccCH
Confidence 99999999999999999999999998876553
No 454
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.19 E-value=0.00024 Score=61.23 Aligned_cols=37 Identities=19% Similarity=0.093 Sum_probs=32.3
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 19 ~l~~isl~I~~Ge~--~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 19 VLENISFSISPGQR--VGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred ceeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhhhcC
Confidence 56677778888887 99999999999999999998764
No 455
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.19 E-value=0.00022 Score=59.78 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=27.6
Q ss_pred CCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 49 DSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 49 ~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 18 is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 18 FDLTVERGER--VAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred eEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 4456777776 99999999999999999987643
No 456
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.19 E-value=0.00022 Score=59.19 Aligned_cols=36 Identities=11% Similarity=0.047 Sum_probs=30.3
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|....+|.. ++|.|++||||||+++.|+..+
T Consensus 20 il~~vs~~i~~G~~--~~I~G~nGsGKStLl~~l~G~~ 55 (220)
T TIGR02982 20 VLFDINLEINPGEI--VILTGPSGSGKTTLLTLIGGLR 55 (220)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 45666677888877 9999999999999999998654
No 457
>PF13245 AAA_19: Part of AAA domain
Probab=97.19 E-value=0.00044 Score=47.53 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=17.6
Q ss_pred eEEEEcCCCCcHH-HHHHHHHHHh
Q psy16563 60 LIVFEGLDGCGKS-HTSQTVAKKL 82 (259)
Q Consensus 60 ii~~~g~~g~gks-t~~~~l~~~~ 82 (259)
+.+|.||+||||| |+++.+++.+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 3778999999999 5566666655
No 458
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.19 E-value=0.00023 Score=60.82 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=31.8
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 22 il~~is~~i~~Ge~--~~I~G~nGsGKSTLl~~l~Gl~~ 58 (261)
T PRK14258 22 ILEGVSMEIYQSKV--TAIIGPSGCGKSTFLKCLNRMNE 58 (261)
T ss_pred EeeceEEEEcCCcE--EEEECCCCCCHHHHHHHHhcccC
Confidence 55667777888887 99999999999999999998754
No 459
>PLN02748 tRNA dimethylallyltransferase
Probab=97.19 E-value=0.00034 Score=64.32 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=29.3
Q ss_pred cCCCCCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
..++.++|+|.||+||||||++..||+.++...+.
T Consensus 18 ~~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~ 52 (468)
T PLN02748 18 QKGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIIN 52 (468)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEc
Confidence 34456689999999999999999999999876543
No 460
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.18 E-value=0.00019 Score=68.43 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=36.2
Q ss_pred HhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 38 IYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.|+....++++.+....+|.. |+|.|++||||||+++.|...+..
T Consensus 343 ~y~~~~~iL~~inl~i~~G~~--v~IvG~sGsGKSTLl~lL~gl~~p 387 (588)
T PRK13657 343 SYDNSRQGVEDVSFEAKPGQT--VAIVGPTGAGKSTLINLLQRVFDP 387 (588)
T ss_pred EeCCCCceecceeEEECCCCE--EEEECCCCCCHHHHHHHHhcCcCC
Confidence 444333467778888888887 999999999999999999987653
No 461
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.18 E-value=0.00021 Score=64.05 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=30.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+..+..|.+ ++|.||+||||||+.+.|+...
T Consensus 20 ~l~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~iaGl~ 55 (362)
T TIGR03258 20 VLDDLSLEIEAGEL--LALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred EEeeeEEEECCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 45666777888887 9999999999999999999754
No 462
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.18 E-value=0.00017 Score=68.74 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=32.8
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.++++.|..+.+|.. ++|.|++||||||++++|...+
T Consensus 364 ~vL~~i~l~i~~G~~--vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 364 TLAGPLNFTLPAGQR--IALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred eeeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCC
Confidence 467777778888888 9999999999999999999876
No 463
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.00028 Score=59.10 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=31.3
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+..+.+|.. ++|.|++||||||+.+.|+..+.
T Consensus 15 il~~i~~~i~~Ge~--~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 15 ALDGVSLDIKEGEF--FTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred eeccceEEECCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 45566677888877 99999999999999999998754
No 464
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.17 E-value=0.00017 Score=65.88 Aligned_cols=69 Identities=16% Similarity=0.025 Sum_probs=44.7
Q ss_pred ccHHHHHHHHHhh----------ccCChHHHHHHHHHhhhc-cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHH
Q psy16563 12 PSLVSVLSILKSA----------QYSSLPEVEELLNIYSRI-NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 12 ~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~ 80 (259)
.+|+.+.+.|+.. .++..-.++.+.-.=++. ..++++.|....+|.. ++|.||+||||||+++.|..
T Consensus 307 ~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~--lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 307 QSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEA--LGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred HHHHHHHHHHHhCccccCCCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCce--EEEECCCCccHHHHHHHHHc
Confidence 4677777777661 122222233333222332 2455667777888887 99999999999999999976
Q ss_pred Hh
Q psy16563 81 KL 82 (259)
Q Consensus 81 ~~ 82 (259)
-.
T Consensus 385 ~w 386 (580)
T COG4618 385 IW 386 (580)
T ss_pred cc
Confidence 53
No 465
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.17 E-value=0.00022 Score=61.34 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=32.0
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+++.+..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 39 ~il~~vs~~i~~Ge~--~~I~G~nGsGKSTLl~~laGl~~ 76 (272)
T PRK14236 39 QALFDISMRIPKNRV--TAFIGPSGCGKSTLLRCFNRMND 76 (272)
T ss_pred eEeeeEEEEEcCCCE--EEEECCCCCCHHHHHHHHHhcCC
Confidence 356667777888887 99999999999999999998653
No 466
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.17 E-value=0.00035 Score=57.18 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+|+|.||+||||||++..|...+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4999999999999999998888763
No 467
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.17 E-value=0.00023 Score=61.59 Aligned_cols=38 Identities=21% Similarity=0.081 Sum_probs=32.5
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 20 ~~l~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~i~Gl~~ 57 (283)
T PRK13636 20 HALKGININIKKGEV--TAILGGNGAGKSTLFQNLNGILK 57 (283)
T ss_pred eeeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 366677778888887 99999999999999999998653
No 468
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.17 E-value=0.00022 Score=63.33 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 31 EVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+++++...|+.. ..+++.|..+.+|.. ++|.||+||||||+.+.|+..+.
T Consensus 43 ~i~nl~k~y~~~-~~l~~is~~i~~Gei--~gLlGpNGaGKSTLl~~L~Gl~~ 92 (340)
T PRK13536 43 DLAGVSKSYGDK-AVVNGLSFTVASGEC--FGLLGPNGAGKSTIARMILGMTS 92 (340)
T ss_pred EEEEEEEEECCE-EEEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHcCCC
Confidence 344455555432 367777778888887 99999999999999999998653
No 469
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.17 E-value=0.00023 Score=60.95 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=31.5
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+++.+..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 30 ~vl~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 66 (265)
T PRK14252 30 QALKNINMMVHEKQV--TALIGPSGCGKSTFLRCFNRMH 66 (265)
T ss_pred eeeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhccc
Confidence 356667777888887 9999999999999999998754
No 470
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.17 E-value=0.00024 Score=61.44 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=31.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 52 vL~~vs~~i~~Ge~--~~liG~NGsGKSTLl~~I~Gl~~ 88 (282)
T cd03291 52 VLKNINLKIEKGEM--LAITGSTGSGKTSLLMLILGELE 88 (282)
T ss_pred ceeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 55666677888877 99999999999999999988653
No 471
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.16 E-value=0.00053 Score=45.01 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
+.+|.|++||||||+..++.--+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999998886654
No 472
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.16 E-value=0.00024 Score=60.55 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=31.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+.+.|+..+.
T Consensus 25 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~iaG~~~ 61 (257)
T PRK14246 25 ILKDITIKIPNNSI--FGIMGPSGSGKSTLLKVLNRLIE 61 (257)
T ss_pred eEeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 56677777888887 99999999999999999997643
No 473
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.16 E-value=0.0002 Score=64.15 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=31.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+.+.|+..+.
T Consensus 8 ~l~~vs~~i~~Gei--~~l~G~sGsGKSTLLr~L~Gl~~ 44 (363)
T TIGR01186 8 GVNDADLAIAKGEI--FVIMGLSGSGKSTTVRMLNRLIE 44 (363)
T ss_pred eEEeeEEEEcCCCE--EEEECCCCChHHHHHHHHhCCCC
Confidence 45666778888887 99999999999999999998654
No 474
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.16 E-value=0.00023 Score=58.77 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=28.3
Q ss_pred CCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 48 QDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 48 ~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
+.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 16 ~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 16 EFDLNVADGEI--VAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred eeEEEEeCCcE--EEEECCCCCCHHHHHHHHhcCC
Confidence 44566788887 9999999999999999998764
No 475
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.16 E-value=0.00023 Score=60.87 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=31.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 23 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 59 (261)
T PRK14263 23 AVRDSHVPIRKNEI--TGFIGPSGCGKSTVLRSLNRMND 59 (261)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHcccc
Confidence 45666777888887 99999999999999999988753
No 476
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.16 E-value=0.0002 Score=67.29 Aligned_cols=46 Identities=15% Similarity=0.040 Sum_probs=36.2
Q ss_pred HHHhhhc-cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 36 LNIYSRI-NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 36 ~~~~~~~-~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.-.|+.. ...+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 327 ~f~y~~~~~~il~~i~l~i~~G~~--~~ivG~sGsGKSTL~~ll~g~~~ 373 (529)
T TIGR02857 327 SVAYPGRRAPALRPVSFTVPPGER--VALVGPSGAGKSTLLNLLLGFVD 373 (529)
T ss_pred EEECCCCCcccccceeEEECCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 3344433 2467778888888887 99999999999999999987654
No 477
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.16 E-value=0.00021 Score=64.40 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=30.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+..+.+|.+ ++|.|++||||||+.+.|+...
T Consensus 34 ~l~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 34 AVDDVSLTIYKGEI--FALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhCCC
Confidence 45566677888887 9999999999999999999754
No 478
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.15 E-value=0.00022 Score=63.13 Aligned_cols=38 Identities=18% Similarity=0.101 Sum_probs=32.9
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 30 ~~l~~vsl~i~~Ge~--~~ivG~sGsGKSTL~~~l~Gl~~ 67 (330)
T PRK09473 30 TAVNDLNFSLRAGET--LGIVGESGSGKSQTAFALMGLLA 67 (330)
T ss_pred EEEeeeEEEEcCCCE--EEEECCCCchHHHHHHHHHcCCC
Confidence 356777788888887 99999999999999999998764
No 479
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.15 E-value=0.0003 Score=66.97 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=34.1
Q ss_pred cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
...+++.+..+.+|.. ++|.|++||||||++++|+..+..
T Consensus 356 ~~il~~i~l~i~~G~~--~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 356 VPALRNINFKIPAGKT--VALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred CccccCceEEeCCCCE--EEEECCCCCCHHHHHHHHHhccCC
Confidence 3467777788888887 999999999999999999987653
No 480
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.15 E-value=0.00059 Score=58.38 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=24.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
|.|+|++|+|||++|+.|++.+|..++
T Consensus 24 vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 889999999999999999998887654
No 481
>KOG0055|consensus
Probab=97.15 E-value=0.00012 Score=73.13 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=42.2
Q ss_pred HHHHHHHhhhccc--cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 32 VEELLNIYSRINE--TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 32 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.+++.-+|+.+|. ++++.+..+..|++ ++|.||+||||||+..+|.+.+..
T Consensus 990 ~~~V~F~YPsRP~~~Il~~l~l~i~~GqT--vALVG~SGsGKSTvI~LLeRfYdp 1042 (1228)
T KOG0055|consen 990 FRNVSFAYPTRPDVPVLNNLSLSIRAGQT--VALVGPSGSGKSTVISLLERFYDP 1042 (1228)
T ss_pred EeeeEeeCCCCCCchhhcCCcEEecCCCE--EEEECCCCCCHHHHHHHHHHhcCC
Confidence 3445557887765 66778888999998 999999999999999999998864
No 482
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.15 E-value=0.00022 Score=63.10 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=32.3
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 35 ~~l~~vsl~i~~Ge~--~~lvG~sGsGKSTLlk~i~Gl~~ 72 (331)
T PRK15079 35 KAVDGVTLRLYEGET--LGVVGESGCGKSTFARAIIGLVK 72 (331)
T ss_pred EEEeeEEEEEcCCCE--EEEECCCCCCHHHHHHHHHCCCC
Confidence 356677778888887 99999999999999999987653
No 483
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.14 E-value=0.00074 Score=53.95 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
.+.+.|.|++|+||||+++.+.+.+...
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4559999999999999999998887765
No 484
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.14 E-value=0.00019 Score=67.84 Aligned_cols=44 Identities=14% Similarity=0.090 Sum_probs=34.7
Q ss_pred HhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 38 IYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.|+.....+++.|....+|.. ++|.|++||||||+++.|+..+.
T Consensus 331 ~y~~~~~~l~~i~~~i~~G~~--~aivG~sGsGKSTL~~ll~g~~~ 374 (547)
T PRK10522 331 AYQDNGFSVGPINLTIKRGEL--LFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred EeCCCCeEEecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 343323366777778888887 99999999999999999988653
No 485
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.14 E-value=0.0002 Score=69.53 Aligned_cols=47 Identities=17% Similarity=0.045 Sum_probs=37.5
Q ss_pred HHHhhh-ccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 36 LNIYSR-INETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 36 ~~~~~~-~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.-.|+. .+.++++.|..+.+|.. |+|.|++||||||++++|+..+..
T Consensus 458 sf~Y~~~~~~vL~~isl~i~~Ge~--vaIvG~sGsGKSTLlklL~gl~~p 505 (686)
T TIGR03797 458 TFRYRPDGPLILDDVSLQIEPGEF--VAIVGPSGSGKSTLLRLLLGFETP 505 (686)
T ss_pred EEEcCCCCccceeeeEEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCC
Confidence 334532 24577888888899988 999999999999999999987653
No 486
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.13 E-value=0.00028 Score=53.26 Aligned_cols=27 Identities=33% Similarity=0.664 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
|.|+|++|.||||+++.||+.++..+.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCcee
Confidence 789999999999999999999997653
No 487
>KOG0056|consensus
Probab=97.13 E-value=0.00015 Score=66.03 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=43.7
Q ss_pred HHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 31 EVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
+..++.-.|+-...++.+.|....+|+. |++.||+|+||||+.+.|-+.+...
T Consensus 539 ~fsnvtF~Y~p~k~vl~disF~v~pGkt--vAlVG~SGaGKSTimRlLfRffdv~ 591 (790)
T KOG0056|consen 539 EFSNVTFAYDPGKPVLSDISFTVQPGKT--VALVGPSGAGKSTIMRLLFRFFDVN 591 (790)
T ss_pred EEEEeEEecCCCCceeecceEEecCCcE--EEEECCCCCchhHHHHHHHHHhhcc
Confidence 4445555677777788888888899888 9999999999999999999987653
No 488
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.13 E-value=0.00026 Score=61.08 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=31.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 22 ~l~~v~l~i~~Ge~--~~I~G~nGsGKSTLl~~l~Gl~~ 58 (277)
T PRK13642 22 QLNGVSFSITKGEW--VSIIGQNGSGKSTTARLIDGLFE 58 (277)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCC
Confidence 56667777888887 99999999999999999997653
No 489
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.12 E-value=0.00031 Score=65.50 Aligned_cols=36 Identities=28% Similarity=0.280 Sum_probs=31.7
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 18 il~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 18 TLQLPSLTLNAGDS--WAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred ecccceEEEcCCCE--EEEECCCCCCHHHHHHHHhccC
Confidence 56677778888887 9999999999999999999865
No 490
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.12 E-value=0.00027 Score=64.71 Aligned_cols=28 Identities=18% Similarity=0.087 Sum_probs=23.5
Q ss_pred CCCCCcccCCCCCeEEEEcCCCCcHHHHHH
Q psy16563 47 DQDSGVGDDRKYPLIVFEGLDGCGKSHTSQ 76 (259)
Q Consensus 47 ~~~~~~~~~~~~~ii~~~g~~g~gkst~~~ 76 (259)
++.+....+|.. |+|+|++||||||+++
T Consensus 23 ~~Vsl~i~~GEi--v~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 23 VKFNKELPSSSL--LFLCGSSGDGKSEILA 50 (504)
T ss_pred hCCceeecCCCE--EEEECCCCCCHHHHHh
Confidence 334456788887 9999999999999999
No 491
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.11 E-value=0.00027 Score=59.89 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=30.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 18 ~l~~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 53 (250)
T PRK14266 18 ILKNVNLDIPKNSV--TALIGPSGCGKSTFIRTLNRMN 53 (250)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhh
Confidence 45566667788877 9999999999999999998754
No 492
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.11 E-value=0.00025 Score=60.37 Aligned_cols=36 Identities=17% Similarity=0.099 Sum_probs=30.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 36 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 71 (257)
T cd03288 36 VLKHVKAYIKPGQK--VGICGRTGSGKSSLSLAFFRMV 71 (257)
T ss_pred ceeEEEEEEcCCCE--EEEECCCCCCHHHHHHHHHccc
Confidence 45566677888887 9999999999999999998864
No 493
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.11 E-value=0.00028 Score=55.39 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=29.0
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.+..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 14 ~l~~~~~~i~~g~~--~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 14 ALDNVSLTLKAGEI--VALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred eEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 34455566777766 9999999999999999998754
No 494
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.11 E-value=0.00031 Score=68.44 Aligned_cols=49 Identities=12% Similarity=0.086 Sum_probs=38.7
Q ss_pred HHHHHhhhc--cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 34 ELLNIYSRI--NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 34 ~~~~~~~~~--~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
++.-.|+.. ..++++.|..+.+|.. |+|.|++||||||+++.|...+..
T Consensus 483 nVsf~Y~~~~~~~vL~~isl~i~~Ge~--vaIvG~SGsGKSTLl~lL~gl~~p 533 (711)
T TIGR00958 483 DVSFSYPNRPDVPVLKGLTFTLHPGEV--VALVGPSGSGKSTVAALLQNLYQP 533 (711)
T ss_pred EEEEECCCCCCCccccCceEEEcCCCE--EEEECCCCCCHHHHHHHHHhccCC
Confidence 334455432 2477888888999988 999999999999999999987653
No 495
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.11 E-value=0.00028 Score=61.69 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 60 iL~~is~~i~~Ge~--~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 60 ALKGVSMDIPEKSV--TALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhccc
Confidence 56666777888887 9999999999999999999765
No 496
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.11 E-value=0.00042 Score=60.71 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=25.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
|.|+|++||||||+++.||+.++..++
T Consensus 67 ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 67 VMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred EEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 999999999999999999999998754
No 497
>PF13173 AAA_14: AAA domain
Probab=97.10 E-value=0.00052 Score=52.00 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++|.|+.||||||+++.+++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4599999999999999999998876
No 498
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.10 E-value=0.00048 Score=56.34 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=24.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
.+|++.||+|+||||.+..||.++...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 369999999999999999999998754
No 499
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.09 E-value=0.00076 Score=59.91 Aligned_cols=31 Identities=26% Similarity=0.202 Sum_probs=27.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKST 89 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~ 89 (259)
.++.|.||+|||||.++++++..++..++..
T Consensus 149 lgllL~GPPGcGKTllAraiA~elg~~~i~v 179 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKMGIEPIVM 179 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHcCCCeEEE
Confidence 3589999999999999999999999886643
No 500
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.09 E-value=0.00027 Score=68.91 Aligned_cols=44 Identities=23% Similarity=0.171 Sum_probs=36.3
Q ss_pred Hhhhc-cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 38 IYSRI-NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 38 ~~~~~-~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.|+.. ..++++.|..+.+|.. |+|.|++||||||+++.|+..+.
T Consensus 486 ~y~~~~~~vL~~isl~i~~Ge~--vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 486 GYSPLEPPLIENFSLTLQPGQR--VALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred ecCCCCCCcccceeEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 45432 3467788888899988 99999999999999999998765
Done!