Query psy16563
Match_columns 259
No_of_seqs 231 out of 2029
Neff 8.9
Searched_HMMs 29240
Date Sat Aug 17 00:23:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hlc_A DTMP kinase, thymidylat 100.0 2.8E-28 9.6E-33 199.9 16.8 183 60-252 4-201 (205)
2 4tmk_A Protein (thymidylate ki 99.9 5.8E-27 2E-31 193.0 17.4 183 60-252 5-207 (213)
3 3hjn_A DTMP kinase, thymidylat 99.9 1.5E-26 5.2E-31 188.5 18.1 180 59-253 1-193 (197)
4 4edh_A DTMP kinase, thymidylat 99.9 2.2E-26 7.6E-31 189.6 17.2 187 54-252 4-207 (213)
5 3v9p_A DTMP kinase, thymidylat 99.9 6.6E-27 2.2E-31 194.2 12.8 188 53-252 22-227 (227)
6 3lv8_A DTMP kinase, thymidylat 99.9 3.9E-26 1.3E-30 190.6 16.2 185 59-253 28-230 (236)
7 3tmk_A Thymidylate kinase; pho 99.9 1.5E-25 5.3E-30 184.6 13.8 179 59-252 6-203 (216)
8 3ld9_A DTMP kinase, thymidylat 99.9 2.1E-25 7E-30 184.6 13.9 180 58-253 21-217 (223)
9 4eaq_A DTMP kinase, thymidylat 99.9 7.9E-23 2.7E-27 170.3 14.4 184 59-252 27-225 (229)
10 2z0h_A DTMP kinase, thymidylat 99.9 3.2E-21 1.1E-25 155.9 16.2 180 59-253 1-193 (197)
11 2pbr_A DTMP kinase, thymidylat 99.8 6.4E-19 2.2E-23 141.9 18.6 178 59-252 1-192 (195)
12 2jaq_A Deoxyguanosine kinase; 99.8 4.6E-19 1.6E-23 143.8 16.3 186 59-253 1-202 (205)
13 2plr_A DTMP kinase, probable t 99.8 1.5E-18 5E-23 141.7 18.6 182 59-253 5-209 (213)
14 3kb2_A SPBC2 prophage-derived 99.8 1.4E-18 4.9E-23 137.2 15.9 165 59-254 2-169 (173)
15 2v54_A DTMP kinase, thymidylat 99.8 1.5E-18 5E-23 141.1 15.3 174 59-252 5-191 (204)
16 1nn5_A Similar to deoxythymidy 99.8 4.1E-18 1.4E-22 139.4 18.0 178 58-252 9-201 (215)
17 2wwf_A Thymidilate kinase, put 99.8 1.7E-18 5.8E-23 141.5 13.3 178 58-252 10-200 (212)
18 2vp4_A Deoxynucleoside kinase; 99.8 2.8E-20 9.5E-25 154.9 2.4 183 53-253 17-226 (230)
19 1p5z_B DCK, deoxycytidine kina 99.8 2.6E-20 9E-25 158.0 1.6 188 57-252 23-259 (263)
20 2ocp_A DGK, deoxyguanosine kin 99.8 1.7E-19 5.8E-24 151.0 6.0 188 59-252 3-234 (241)
21 3umf_A Adenylate kinase; rossm 99.8 3.9E-17 1.3E-21 134.4 19.2 169 57-253 28-215 (217)
22 1p6x_A Thymidine kinase; P-loo 99.7 7.5E-18 2.6E-22 146.7 11.2 156 59-223 8-200 (334)
23 3sr0_A Adenylate kinase; phosp 99.7 1.7E-16 5.7E-21 129.8 17.0 166 59-251 1-204 (206)
24 1e2k_A Thymidine kinase; trans 99.7 1.1E-17 3.7E-22 145.6 9.7 156 59-223 5-197 (331)
25 1of1_A Thymidine kinase; trans 99.7 1.7E-17 5.8E-22 146.1 9.9 157 58-223 49-242 (376)
26 1tev_A UMP-CMP kinase; ploop, 99.7 3.6E-16 1.2E-20 125.7 16.9 172 59-251 4-194 (196)
27 1qf9_A UMP/CMP kinase, protein 99.7 2.2E-16 7.5E-21 126.7 15.0 171 58-252 6-192 (194)
28 2c95_A Adenylate kinase 1; tra 99.7 1.4E-16 4.7E-21 128.4 13.8 166 58-252 9-194 (196)
29 2bwj_A Adenylate kinase 5; pho 99.7 4.7E-16 1.6E-20 125.6 16.0 166 58-252 12-197 (199)
30 1gtv_A TMK, thymidylate kinase 99.7 1.3E-18 4.3E-23 142.5 0.1 184 59-247 1-209 (214)
31 2cdn_A Adenylate kinase; phosp 99.7 8.1E-16 2.8E-20 124.8 14.4 164 58-250 20-200 (201)
32 3vaa_A Shikimate kinase, SK; s 99.7 3.3E-15 1.1E-19 121.2 17.2 171 46-253 15-197 (199)
33 1ukz_A Uridylate kinase; trans 99.7 2.9E-15 9.8E-20 121.6 16.7 171 55-251 12-201 (203)
34 3fb4_A Adenylate kinase; psych 99.7 4.6E-15 1.6E-19 121.6 17.9 169 59-252 1-215 (216)
35 1osn_A Thymidine kinase, VZV-T 99.7 3.3E-16 1.1E-20 136.5 10.5 156 59-223 13-209 (341)
36 3dl0_A Adenylate kinase; phosp 99.7 3.5E-15 1.2E-19 122.4 15.7 169 59-252 1-215 (216)
37 2xb4_A Adenylate kinase; ATP-b 99.7 2.3E-15 7.9E-20 124.4 14.6 164 59-249 1-222 (223)
38 1zak_A Adenylate kinase; ATP:A 99.6 5.9E-15 2E-19 121.6 16.3 169 58-252 5-211 (222)
39 3lw7_A Adenylate kinase relate 99.6 6.2E-15 2.1E-19 116.1 15.5 159 59-252 2-177 (179)
40 2rhm_A Putative kinase; P-loop 99.6 7.2E-16 2.4E-20 123.9 10.0 166 58-249 5-186 (193)
41 1nks_A Adenylate kinase; therm 99.6 2.2E-15 7.5E-20 120.8 12.0 167 59-249 2-193 (194)
42 1ak2_A Adenylate kinase isoenz 99.6 2E-14 6.9E-19 119.4 17.7 170 58-252 16-231 (233)
43 3t61_A Gluconokinase; PSI-biol 99.6 8.3E-15 2.9E-19 118.9 14.5 162 57-252 17-180 (202)
44 3be4_A Adenylate kinase; malar 99.6 4.6E-15 1.6E-19 122.0 12.8 113 59-197 6-133 (217)
45 3cm0_A Adenylate kinase; ATP-b 99.6 7.1E-15 2.4E-19 117.5 12.8 164 59-250 5-185 (186)
46 1e4v_A Adenylate kinase; trans 99.6 5.7E-15 2E-19 121.1 12.1 109 60-197 2-124 (214)
47 3gmt_A Adenylate kinase; ssgci 99.6 2.2E-14 7.5E-19 118.5 15.4 167 58-250 8-228 (230)
48 2vli_A Antibiotic resistance p 99.6 2.4E-15 8.2E-20 119.9 9.4 166 58-253 5-173 (183)
49 3tlx_A Adenylate kinase 2; str 99.6 1.9E-14 6.4E-19 120.5 15.3 163 58-250 29-242 (243)
50 1aky_A Adenylate kinase; ATP:A 99.6 2.2E-14 7.7E-19 118.0 15.0 165 59-251 5-219 (220)
51 3a4m_A L-seryl-tRNA(SEC) kinas 99.6 1.6E-14 5.5E-19 122.1 14.1 164 58-254 4-176 (260)
52 1kht_A Adenylate kinase; phosp 99.6 1.5E-14 5.2E-19 115.8 12.9 171 59-249 4-191 (192)
53 4eun_A Thermoresistant glucoki 99.6 6.5E-14 2.2E-18 113.6 16.1 162 59-253 30-195 (200)
54 1zd8_A GTP:AMP phosphotransfer 99.5 8.6E-14 2.9E-18 115.0 14.4 163 58-253 7-216 (227)
55 1zuh_A Shikimate kinase; alpha 99.5 1.1E-13 3.6E-18 109.0 13.8 153 58-249 7-167 (168)
56 3czq_A Putative polyphosphate 99.5 6.9E-15 2.4E-19 125.7 7.2 162 58-249 86-276 (304)
57 4i1u_A Dephospho-COA kinase; s 99.5 5.2E-13 1.8E-17 108.9 17.3 158 59-252 10-202 (210)
58 3trf_A Shikimate kinase, SK; a 99.5 2.3E-13 8E-18 108.6 14.3 159 59-252 6-175 (185)
59 1e6c_A Shikimate kinase; phosp 99.5 3E-13 1E-17 106.6 14.1 158 59-251 3-170 (173)
60 2yvu_A Probable adenylyl-sulfa 99.5 3.9E-14 1.3E-18 113.5 8.5 170 59-252 14-184 (186)
61 2pt5_A Shikimate kinase, SK; a 99.5 4.1E-13 1.4E-17 105.4 14.1 160 59-253 1-165 (168)
62 1ly1_A Polynucleotide kinase; 99.5 6.2E-14 2.1E-18 111.1 9.3 160 59-251 3-172 (181)
63 3nwj_A ATSK2; P loop, shikimat 99.5 6.2E-14 2.1E-18 117.8 9.4 160 56-252 48-237 (250)
64 2iyv_A Shikimate kinase, SK; t 99.5 4.3E-13 1.5E-17 107.0 13.7 159 59-252 3-169 (184)
65 1vht_A Dephospho-COA kinase; s 99.5 1.2E-12 4.3E-17 107.2 16.2 69 175-252 125-195 (218)
66 1knq_A Gluconate kinase; ALFA/ 99.5 1.3E-12 4.5E-17 103.3 15.1 159 59-251 9-173 (175)
67 1via_A Shikimate kinase; struc 99.5 9.2E-13 3.1E-17 104.3 13.9 159 60-253 6-168 (175)
68 3fdi_A Uncharacterized protein 99.5 1.1E-12 3.7E-17 106.7 14.5 75 177-252 118-199 (201)
69 1m7g_A Adenylylsulfate kinase; 99.4 4.8E-13 1.6E-17 109.4 10.4 164 59-252 26-203 (211)
70 3iij_A Coilin-interacting nucl 99.4 8.5E-12 2.9E-16 99.1 15.1 30 59-88 12-41 (180)
71 1y63_A LMAJ004144AAA protein; 99.4 6.5E-12 2.2E-16 100.4 13.8 32 57-88 9-41 (184)
72 4e22_A Cytidylate kinase; P-lo 99.4 1.3E-11 4.4E-16 103.8 16.0 74 176-253 163-246 (252)
73 2f6r_A COA synthase, bifunctio 99.4 1.9E-11 6.3E-16 104.4 16.8 69 176-252 200-269 (281)
74 1jjv_A Dephospho-COA kinase; P 99.4 1.3E-11 4.3E-16 100.2 14.9 70 176-252 124-197 (206)
75 1kag_A SKI, shikimate kinase I 99.4 1.1E-11 3.7E-16 97.7 13.4 73 176-251 97-172 (173)
76 1qhx_A CPT, protein (chloramph 99.4 6.6E-12 2.3E-16 99.4 12.0 157 59-249 4-176 (178)
77 3ake_A Cytidylate kinase; CMP 99.3 6.4E-11 2.2E-15 95.8 16.4 71 175-250 135-207 (208)
78 1cke_A CK, MSSA, protein (cyti 99.3 4.2E-11 1.4E-15 98.4 15.4 76 174-252 139-223 (227)
79 3r20_A Cytidylate kinase; stru 99.3 6.6E-11 2.3E-15 98.1 15.9 74 176-252 146-228 (233)
80 3hdt_A Putative kinase; struct 99.3 7.9E-12 2.7E-16 103.1 10.0 76 177-253 138-220 (223)
81 2qt1_A Nicotinamide riboside k 99.3 5.3E-12 1.8E-16 102.6 8.9 76 175-252 129-206 (207)
82 1uf9_A TT1252 protein; P-loop, 99.3 2.1E-11 7.3E-16 98.3 12.1 69 176-253 125-195 (203)
83 2grj_A Dephospho-COA kinase; T 99.3 6.9E-11 2.4E-15 95.3 14.9 31 58-88 12-42 (192)
84 2if2_A Dephospho-COA kinase; a 99.3 1E-10 3.4E-15 94.7 15.9 64 176-252 124-192 (204)
85 2bbw_A Adenylate kinase 4, AK4 99.3 5.3E-10 1.8E-14 93.3 19.2 30 58-87 27-56 (246)
86 1uj2_A Uridine-cytidine kinase 99.3 8.8E-11 3E-15 98.5 14.0 72 176-252 151-234 (252)
87 2qor_A Guanylate kinase; phosp 99.3 1.4E-11 4.8E-16 100.1 8.8 68 178-252 128-197 (204)
88 1x6v_B Bifunctional 3'-phospho 99.2 9.2E-12 3.2E-16 116.5 7.5 166 58-253 52-224 (630)
89 1q3t_A Cytidylate kinase; nucl 99.2 1.2E-09 4E-14 90.7 18.6 72 176-251 153-234 (236)
90 3uie_A Adenylyl-sulfate kinase 99.2 3.9E-11 1.3E-15 97.1 9.4 158 59-253 26-196 (200)
91 2pez_A Bifunctional 3'-phospho 99.2 1E-11 3.6E-16 98.6 5.8 73 175-252 104-176 (179)
92 1ltq_A Polynucleotide kinase; 99.2 9.6E-11 3.3E-15 100.5 11.5 116 59-198 3-128 (301)
93 3czp_A Putative polyphosphate 99.2 3.7E-11 1.3E-15 109.7 7.5 170 56-250 41-234 (500)
94 2h92_A Cytidylate kinase; ross 99.1 4.1E-09 1.4E-13 86.0 18.0 72 176-251 136-217 (219)
95 2gks_A Bifunctional SAT/APS ki 99.1 5.3E-11 1.8E-15 110.5 7.0 168 59-253 373-542 (546)
96 3czp_A Putative polyphosphate 99.1 1.7E-10 5.7E-15 105.4 7.0 171 56-251 298-492 (500)
97 1gvn_B Zeta; postsegregational 99.1 6.5E-09 2.2E-13 88.9 16.3 117 58-196 33-162 (287)
98 1m8p_A Sulfate adenylyltransfe 99.1 1.2E-10 4.2E-15 108.5 5.8 171 58-253 396-568 (573)
99 3tr0_A Guanylate kinase, GMP k 99.0 2.4E-10 8.3E-15 92.2 6.7 29 53-83 4-32 (205)
100 2j41_A Guanylate kinase; GMP, 98.9 3.5E-10 1.2E-14 91.4 3.2 23 60-82 8-30 (207)
101 1ex7_A Guanylate kinase; subst 98.9 2.2E-09 7.7E-14 85.9 7.5 24 61-84 4-27 (186)
102 3tau_A Guanylate kinase, GMP k 98.9 3.9E-10 1.3E-14 91.8 2.7 26 59-84 9-34 (208)
103 2bdt_A BH3686; alpha-beta prot 98.9 2.1E-08 7E-13 80.0 11.8 62 178-246 104-168 (189)
104 3rhf_A Putative polyphosphate 98.9 1.2E-08 4.2E-13 86.0 10.6 174 58-252 75-268 (289)
105 1zp6_A Hypothetical protein AT 98.8 3E-09 1E-13 84.8 6.0 69 178-252 108-176 (191)
106 3zvl_A Bifunctional polynucleo 98.8 2.8E-09 9.6E-14 95.8 5.8 104 55-198 255-359 (416)
107 3tqc_A Pantothenate kinase; bi 98.8 2.7E-09 9.4E-14 92.4 5.4 27 57-83 91-117 (321)
108 1rz3_A Hypothetical protein rb 98.8 7.3E-09 2.5E-13 83.7 7.6 26 58-83 22-47 (201)
109 3a00_A Guanylate kinase, GMP k 98.8 1.6E-09 5.3E-14 86.6 3.5 24 60-83 3-26 (186)
110 2p5t_B PEZT; postsegregational 98.8 2E-08 7E-13 84.1 10.4 27 58-84 32-58 (253)
111 3asz_A Uridine kinase; cytidin 98.8 8.9E-08 3E-12 77.5 12.8 24 60-83 8-31 (211)
112 3cr8_A Sulfate adenylyltranfer 98.8 1.6E-07 5.5E-12 87.1 15.9 203 10-253 328-541 (552)
113 3lnc_A Guanylate kinase, GMP k 98.8 4E-09 1.4E-13 87.0 4.2 34 48-83 19-53 (231)
114 1sq5_A Pantothenate kinase; P- 98.7 7.7E-08 2.7E-12 82.9 11.2 26 58-83 80-105 (308)
115 2jeo_A Uridine-cytidine kinase 98.7 1.1E-07 3.7E-12 79.1 11.5 39 45-85 14-52 (245)
116 1a7j_A Phosphoribulokinase; tr 98.7 1.7E-08 5.8E-13 86.4 5.0 26 58-83 5-30 (290)
117 1kgd_A CASK, peripheral plasma 98.6 2.1E-07 7.3E-12 73.7 9.6 24 60-83 7-30 (180)
118 2axn_A 6-phosphofructo-2-kinas 98.6 4.8E-07 1.6E-11 83.5 13.2 31 57-87 34-64 (520)
119 2ze6_A Isopentenyl transferase 98.5 1.5E-07 5.2E-12 78.8 7.7 30 59-88 2-31 (253)
120 3c8u_A Fructokinase; YP_612366 98.5 1.2E-07 4.1E-12 76.9 6.4 25 59-83 23-47 (208)
121 1s96_A Guanylate kinase, GMP k 98.4 1.4E-06 4.9E-11 71.3 10.5 29 53-83 13-41 (219)
122 3a8t_A Adenylate isopentenyltr 98.3 4.4E-07 1.5E-11 78.8 4.7 31 58-88 40-70 (339)
123 1lvg_A Guanylate kinase, GMP k 98.3 1.7E-06 5.9E-11 69.5 7.5 23 61-83 7-29 (198)
124 1bif_A 6-phosphofructo-2-kinas 98.2 1.3E-05 4.3E-10 73.0 12.0 42 58-99 39-80 (469)
125 4gp7_A Metallophosphoesterase; 98.0 2.5E-05 8.6E-10 61.1 8.3 25 52-78 5-29 (171)
126 1z6g_A Guanylate kinase; struc 98.0 4.3E-06 1.5E-10 68.2 3.8 36 45-82 12-47 (218)
127 3ch4_B Pmkase, phosphomevalona 97.8 6.3E-05 2.2E-09 60.5 8.4 26 58-83 11-36 (202)
128 1ye8_A Protein THEP1, hypothet 97.7 2.4E-05 8.1E-10 61.8 3.9 25 60-84 2-26 (178)
129 3tif_A Uncharacterized ABC tra 97.7 7.6E-06 2.6E-10 67.7 0.9 37 45-83 20-56 (235)
130 3gfo_A Cobalt import ATP-bindi 97.7 6.9E-06 2.4E-10 69.5 0.7 44 38-83 16-59 (275)
131 3ney_A 55 kDa erythrocyte memb 97.7 2.5E-05 8.4E-10 62.8 3.6 29 53-83 16-44 (197)
132 3crm_A TRNA delta(2)-isopenten 97.6 2.6E-05 8.7E-10 67.4 3.3 30 59-88 6-35 (323)
133 2v9p_A Replication protein E1; 97.6 6.2E-06 2.1E-10 70.8 -0.6 39 45-85 115-153 (305)
134 1znw_A Guanylate kinase, GMP k 97.6 2.9E-05 9.9E-10 62.6 3.4 30 52-83 16-45 (207)
135 2pcj_A ABC transporter, lipopr 97.6 1E-05 3.4E-10 66.4 0.6 37 45-83 19-55 (224)
136 2cbz_A Multidrug resistance-as 97.6 1.3E-05 4.6E-10 66.2 1.1 37 45-83 20-56 (237)
137 1g6h_A High-affinity branched- 97.6 1.5E-05 5.2E-10 66.7 1.3 37 45-83 22-58 (257)
138 1htw_A HI0065; nucleotide-bind 97.6 2.5E-05 8.7E-10 60.5 2.5 30 52-83 29-58 (158)
139 4g1u_C Hemin import ATP-bindin 97.6 1.2E-05 4.1E-10 67.7 0.7 38 44-83 25-62 (266)
140 3d3q_A TRNA delta(2)-isopenten 97.6 3.5E-05 1.2E-09 67.0 3.5 29 59-87 8-36 (340)
141 1sgw_A Putative ABC transporte 97.6 1.4E-05 4.9E-10 65.0 1.0 36 45-82 24-59 (214)
142 1odf_A YGR205W, hypothetical 3 97.6 4.3E-05 1.5E-09 65.1 4.0 27 58-84 31-57 (290)
143 1b0u_A Histidine permease; ABC 97.6 1.4E-05 4.7E-10 67.2 0.9 37 45-83 21-57 (262)
144 2d2e_A SUFC protein; ABC-ATPas 97.5 1.8E-05 6.1E-10 66.0 1.2 35 45-81 18-52 (250)
145 3fvq_A Fe(3+) IONS import ATP- 97.5 1.9E-05 6.5E-10 69.2 1.4 37 45-83 19-55 (359)
146 3nh6_A ATP-binding cassette SU 97.5 1.3E-05 4.4E-10 68.9 0.3 74 8-83 19-105 (306)
147 2olj_A Amino acid ABC transpor 97.5 1.6E-05 5.5E-10 66.8 0.9 37 45-83 39-75 (263)
148 2ff7_A Alpha-hemolysin translo 97.5 1.5E-05 5.1E-10 66.4 0.7 37 45-83 24-60 (247)
149 1ji0_A ABC transporter; ATP bi 97.5 1.5E-05 5.2E-10 66.0 0.7 37 45-83 21-57 (240)
150 1g8f_A Sulfate adenylyltransfe 97.5 0.00016 5.4E-09 66.3 7.5 63 10-84 354-421 (511)
151 2pze_A Cystic fibrosis transme 97.5 1.7E-05 5.7E-10 65.3 0.8 37 45-83 23-59 (229)
152 2zu0_C Probable ATP-dependent 97.5 2.1E-05 7.1E-10 66.3 1.4 35 45-81 35-69 (267)
153 2ixe_A Antigen peptide transpo 97.5 1.9E-05 6.5E-10 66.7 1.1 37 45-83 34-70 (271)
154 3ec2_A DNA replication protein 97.5 5.2E-05 1.8E-09 59.5 3.5 28 54-83 36-63 (180)
155 1mv5_A LMRA, multidrug resista 97.5 1.6E-05 5.5E-10 66.0 0.6 37 45-83 17-53 (243)
156 3foz_A TRNA delta(2)-isopenten 97.5 5.5E-05 1.9E-09 64.8 3.8 30 58-87 10-39 (316)
157 1vpl_A ABC transporter, ATP-bi 97.5 1.9E-05 6.4E-10 66.2 0.9 37 45-83 30-66 (256)
158 2ghi_A Transport protein; mult 97.5 2E-05 7E-10 66.1 1.1 36 45-82 35-70 (260)
159 2qi9_C Vitamin B12 import ATP- 97.5 2E-05 7E-10 65.6 0.8 35 46-82 16-50 (249)
160 3rlf_A Maltose/maltodextrin im 97.5 2.5E-05 8.6E-10 69.0 1.4 37 45-83 18-54 (381)
161 3exa_A TRNA delta(2)-isopenten 97.5 4.4E-05 1.5E-09 65.5 2.8 28 59-86 4-31 (322)
162 2ihy_A ABC transporter, ATP-bi 97.5 2E-05 7E-10 66.8 0.7 37 45-83 36-72 (279)
163 2yz2_A Putative ABC transporte 97.5 2.3E-05 7.9E-10 65.9 0.9 36 45-82 22-57 (266)
164 1z47_A CYSA, putative ABC-tran 97.5 2.8E-05 9.7E-10 68.1 1.4 37 45-83 30-66 (355)
165 2nq2_C Hypothetical ABC transp 97.5 2.3E-05 7.9E-10 65.5 0.7 37 45-83 20-56 (253)
166 3b9q_A Chloroplast SRP recepto 97.5 0.00022 7.4E-09 61.1 6.8 30 53-84 97-126 (302)
167 2yyz_A Sugar ABC transporter, 97.4 3.1E-05 1.1E-09 68.0 1.4 37 45-83 18-54 (359)
168 2it1_A 362AA long hypothetical 97.4 3.2E-05 1.1E-09 67.9 1.4 37 45-83 18-54 (362)
169 3aez_A Pantothenate kinase; tr 97.4 6.9E-05 2.3E-09 64.5 3.4 25 59-83 91-115 (312)
170 1v43_A Sugar-binding transport 97.4 3.4E-05 1.2E-09 68.0 1.4 37 45-83 26-62 (372)
171 3tui_C Methionine import ATP-b 97.4 3.4E-05 1.2E-09 67.7 1.4 37 45-83 43-79 (366)
172 3gd7_A Fusion complex of cysti 97.4 3.7E-05 1.3E-09 68.2 1.6 38 44-83 35-72 (390)
173 1dek_A Deoxynucleoside monopho 97.4 7.8E-05 2.7E-09 61.8 3.4 67 175-251 167-240 (241)
174 3d31_A Sulfate/molybdate ABC t 97.4 3E-05 1E-09 67.8 0.7 37 45-83 15-51 (348)
175 2x8a_A Nuclear valosin-contain 97.4 5.8E-05 2E-09 63.7 2.4 27 61-87 47-73 (274)
176 1g29_1 MALK, maltose transport 97.4 3.7E-05 1.3E-09 67.8 1.2 37 45-83 18-54 (372)
177 2bbs_A Cystic fibrosis transme 97.4 3.6E-05 1.2E-09 65.6 1.1 38 44-83 52-89 (290)
178 2onk_A Molybdate/tungstate ABC 97.4 4.1E-05 1.4E-09 63.5 1.3 35 46-83 15-49 (240)
179 1oxx_K GLCV, glucose, ABC tran 97.4 2.8E-05 9.5E-10 68.1 0.3 37 45-83 20-56 (353)
180 1tue_A Replication protein E1; 97.4 0.00037 1.2E-08 56.2 6.6 62 13-87 26-87 (212)
181 2yhs_A FTSY, cell division pro 97.4 0.00023 7.8E-09 64.8 6.0 34 49-84 286-319 (503)
182 2ga8_A Hypothetical 39.9 kDa p 97.3 0.00018 6.3E-09 62.7 5.1 34 53-86 19-52 (359)
183 1ixz_A ATP-dependent metallopr 97.3 0.00011 3.9E-09 60.8 3.5 27 61-87 52-78 (254)
184 4b4t_J 26S protease regulatory 97.3 0.00021 7.3E-09 63.4 5.4 29 61-89 185-213 (405)
185 3eph_A TRNA isopentenyltransfe 97.3 0.00011 3.6E-09 65.3 3.2 30 59-88 3-32 (409)
186 3hws_A ATP-dependent CLP prote 97.3 0.00078 2.7E-08 58.8 8.8 28 61-88 54-81 (363)
187 2f1r_A Molybdopterin-guanine d 97.3 0.0001 3.5E-09 57.8 2.6 27 59-85 3-29 (171)
188 2og2_A Putative signal recogni 97.3 0.00038 1.3E-08 61.0 6.5 26 59-84 158-183 (359)
189 2eyu_A Twitching motility prot 97.3 0.00012 4.3E-09 61.3 3.2 29 53-83 22-50 (261)
190 1xjc_A MOBB protein homolog; s 97.3 0.00021 7.1E-09 55.9 4.1 28 58-85 4-31 (169)
191 2pjz_A Hypothetical protein ST 97.3 5.3E-05 1.8E-09 63.7 0.7 35 45-82 20-54 (263)
192 4b4t_K 26S protease regulatory 97.3 0.0002 7E-09 64.1 4.4 28 61-88 209-236 (428)
193 3t15_A Ribulose bisphosphate c 97.2 0.00021 7.3E-09 60.8 4.3 29 60-88 38-66 (293)
194 2i3b_A HCR-ntpase, human cance 97.2 0.0002 6.7E-09 57.1 3.9 23 61-83 4-26 (189)
195 2ehv_A Hypothetical protein PH 97.2 0.00015 5.2E-09 59.4 3.3 27 52-80 26-52 (251)
196 2npi_A Protein CLP1; CLP1-PCF1 97.2 0.00023 7.9E-09 64.5 4.5 45 29-82 118-162 (460)
197 3h4m_A Proteasome-activating n 97.2 0.00052 1.8E-08 57.6 6.4 27 61-87 54-80 (285)
198 1rj9_A FTSY, signal recognitio 97.2 0.00026 8.9E-09 60.7 4.4 27 58-84 102-128 (304)
199 4b4t_L 26S protease subunit RP 97.2 0.00025 8.5E-09 63.7 4.5 29 61-89 218-246 (437)
200 1iy2_A ATP-dependent metallopr 97.2 0.00019 6.5E-09 60.4 3.5 27 61-87 76-102 (278)
201 1np6_A Molybdopterin-guanine d 97.2 0.00027 9.3E-09 55.5 4.0 27 58-84 6-32 (174)
202 1svm_A Large T antigen; AAA+ f 97.2 0.00016 5.5E-09 63.8 2.9 34 53-88 166-199 (377)
203 1kjw_A Postsynaptic density pr 97.2 0.00099 3.4E-08 56.8 7.7 65 178-252 217-282 (295)
204 2kjq_A DNAA-related protein; s 97.2 0.00019 6.5E-09 54.9 2.8 24 60-83 38-61 (149)
205 4b4t_H 26S protease regulatory 97.2 0.0003 1E-08 63.4 4.4 28 61-88 246-273 (467)
206 4a74_A DNA repair and recombin 97.2 0.00018 6.2E-09 58.2 2.8 29 53-83 22-50 (231)
207 1lv7_A FTSH; alpha/beta domain 97.2 0.00023 7.7E-09 59.1 3.4 28 61-88 48-75 (257)
208 3b85_A Phosphate starvation-in 97.2 0.00017 6E-09 58.3 2.6 21 61-81 25-45 (208)
209 3cf0_A Transitional endoplasmi 97.1 0.00027 9.3E-09 60.3 3.7 28 61-88 52-79 (301)
210 3qf4_B Uncharacterized ABC tra 97.1 0.00012 4E-09 68.6 1.5 44 38-83 363-406 (598)
211 3b5x_A Lipid A export ATP-bind 97.1 0.00016 5.6E-09 67.4 2.4 39 43-83 356-394 (582)
212 1lw7_A Transcriptional regulat 97.1 0.00025 8.7E-09 62.2 3.2 26 60-85 172-197 (365)
213 4b4t_M 26S protease regulatory 97.1 0.0003 1E-08 63.1 3.7 28 61-88 218-245 (434)
214 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.00033 1.1E-08 57.9 3.4 27 61-87 42-68 (262)
215 1cr0_A DNA primase/helicase; R 97.0 0.00017 5.6E-09 61.3 1.6 30 52-83 31-60 (296)
216 1in4_A RUVB, holliday junction 97.0 0.00033 1.1E-08 60.7 3.5 27 60-86 53-79 (334)
217 1ofh_A ATP-dependent HSL prote 97.0 0.00081 2.8E-08 56.8 5.7 27 61-87 53-79 (310)
218 3e70_C DPA, signal recognition 97.0 0.00044 1.5E-08 59.9 4.0 27 58-84 129-155 (328)
219 3b9p_A CG5977-PA, isoform A; A 97.0 0.00035 1.2E-08 59.1 3.4 28 60-87 56-83 (297)
220 2p65_A Hypothetical protein PF 97.0 0.0012 4E-08 51.1 6.1 25 60-84 45-69 (187)
221 1g41_A Heat shock protein HSLU 97.0 0.002 7E-08 57.9 8.2 27 61-87 53-79 (444)
222 1yqt_A RNAse L inhibitor; ATP- 97.0 0.00034 1.2E-08 64.6 3.2 35 45-82 37-71 (538)
223 3jvv_A Twitching mobility prot 97.0 0.00045 1.5E-08 60.5 3.7 25 60-84 125-149 (356)
224 1jbk_A CLPB protein; beta barr 97.0 0.00059 2E-08 52.9 4.1 25 60-84 45-69 (195)
225 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00047 1.6E-08 55.7 3.6 28 53-82 20-47 (235)
226 2gza_A Type IV secretion syste 97.0 0.00018 6.3E-09 63.1 1.2 30 52-83 171-200 (361)
227 3n70_A Transport activator; si 96.9 0.0011 3.8E-08 50.0 5.3 22 61-82 27-48 (145)
228 3bos_A Putative DNA replicatio 96.9 0.00058 2E-08 55.3 3.8 25 60-84 54-78 (242)
229 3b60_A Lipid A export ATP-bind 96.9 0.0002 6.7E-09 66.9 1.1 38 44-83 357-394 (582)
230 3sop_A Neuronal-specific septi 96.9 0.00051 1.7E-08 57.8 3.4 24 60-83 4-27 (270)
231 4fcw_A Chaperone protein CLPB; 96.9 0.0023 7.9E-08 54.2 7.4 25 60-84 49-73 (311)
232 2ewv_A Twitching motility prot 96.9 0.0005 1.7E-08 60.5 3.3 25 60-84 138-162 (372)
233 1d2n_A N-ethylmaleimide-sensit 96.9 0.00056 1.9E-08 57.2 3.5 28 60-87 66-93 (272)
234 1vma_A Cell division protein F 96.9 0.00076 2.6E-08 57.8 4.3 27 58-84 104-130 (306)
235 4b4t_I 26S protease regulatory 96.9 0.00058 2E-08 61.0 3.6 29 61-89 219-247 (437)
236 2r62_A Cell division protease 96.9 0.00042 1.4E-08 57.7 2.6 29 61-89 47-75 (268)
237 2dhr_A FTSH; AAA+ protein, hex 96.9 0.0014 4.8E-08 59.9 6.1 27 61-87 67-93 (499)
238 3eie_A Vacuolar protein sortin 96.8 0.0006 2.1E-08 58.6 3.4 29 60-88 53-81 (322)
239 2qmh_A HPR kinase/phosphorylas 96.8 0.0004 1.4E-08 55.7 2.0 27 60-87 36-62 (205)
240 2yl4_A ATP-binding cassette SU 96.8 0.0002 6.8E-09 67.0 0.2 37 45-83 359-395 (595)
241 3kta_A Chromosome segregation 96.8 0.00079 2.7E-08 52.6 3.6 25 60-84 28-52 (182)
242 2cvh_A DNA repair and recombin 96.8 0.00081 2.8E-08 53.9 3.7 26 53-80 17-42 (220)
243 3dm5_A SRP54, signal recogniti 96.8 0.0022 7.5E-08 57.6 6.8 29 57-85 99-127 (443)
244 2chg_A Replication factor C sm 96.8 0.001 3.4E-08 52.9 4.2 24 61-84 41-64 (226)
245 1njg_A DNA polymerase III subu 96.8 0.00088 3E-08 53.9 3.8 26 60-85 47-72 (250)
246 2qm8_A GTPase/ATPase; G protei 96.8 0.00065 2.2E-08 59.0 3.2 29 53-83 52-80 (337)
247 2qp9_X Vacuolar protein sortin 96.8 0.00091 3.1E-08 58.4 4.1 28 61-88 87-114 (355)
248 4a82_A Cystic fibrosis transme 96.8 0.00018 6.3E-09 67.0 -0.5 38 44-83 355-392 (578)
249 1nij_A Hypothetical protein YJ 96.8 0.00062 2.1E-08 58.6 2.8 25 58-82 4-28 (318)
250 2w58_A DNAI, primosome compone 96.8 0.00096 3.3E-08 53.0 3.8 25 60-84 56-80 (202)
251 1sxj_C Activator 1 40 kDa subu 96.7 0.00082 2.8E-08 58.1 3.6 28 57-84 45-72 (340)
252 2px0_A Flagellar biosynthesis 96.7 0.0011 3.8E-08 56.5 4.3 26 58-83 105-130 (296)
253 2xkx_A Disks large homolog 4; 96.7 0.0083 2.8E-07 57.3 10.8 68 178-254 643-710 (721)
254 3bk7_A ABC transporter ATP-bin 96.7 0.00058 2E-08 64.0 2.7 35 45-82 107-141 (607)
255 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.00078 2.7E-08 58.1 3.3 27 60-86 47-74 (322)
256 1zu4_A FTSY; GTPase, signal re 96.7 0.001 3.5E-08 57.3 4.0 27 58-84 105-131 (320)
257 1um8_A ATP-dependent CLP prote 96.7 0.00082 2.8E-08 59.0 3.4 27 61-87 75-101 (376)
258 3qf4_A ABC transporter, ATP-bi 96.7 0.00026 8.8E-09 66.2 0.1 38 44-83 357-394 (587)
259 1p9r_A General secretion pathw 96.7 0.00089 3.1E-08 59.9 3.6 25 60-84 169-193 (418)
260 2pt7_A CAG-ALFA; ATPase, prote 96.7 0.00025 8.4E-09 61.5 -0.1 29 53-83 168-196 (330)
261 3syl_A Protein CBBX; photosynt 96.7 0.00094 3.2E-08 56.7 3.4 25 61-85 70-94 (309)
262 3te6_A Regulatory protein SIR3 96.7 0.0015 5.2E-08 56.2 4.5 27 57-83 44-70 (318)
263 1n0w_A DNA repair protein RAD5 96.6 0.001 3.5E-08 54.2 3.2 27 53-81 21-47 (243)
264 1sxj_D Activator 1 41 kDa subu 96.6 0.0014 4.7E-08 56.5 4.2 25 60-84 60-84 (353)
265 3pfi_A Holliday junction ATP-d 96.6 0.0013 4.6E-08 56.5 4.0 28 61-88 58-85 (338)
266 2qag_B Septin-6, protein NEDD5 96.6 0.00069 2.4E-08 60.6 2.1 30 52-81 36-65 (427)
267 1sxj_E Activator 1 40 kDa subu 96.6 0.0012 4.1E-08 57.1 3.6 24 59-82 37-60 (354)
268 3d8b_A Fidgetin-like protein 1 96.6 0.0011 3.7E-08 58.0 3.3 28 60-87 119-146 (357)
269 1u0j_A DNA replication protein 96.6 0.004 1.4E-07 52.1 6.6 58 13-82 71-128 (267)
270 1l8q_A Chromosomal replication 96.6 0.0015 5.1E-08 56.0 4.0 23 61-83 40-62 (324)
271 3euj_A Chromosome partition pr 96.6 0.00072 2.5E-08 61.5 2.0 32 49-83 23-54 (483)
272 3m6a_A ATP-dependent protease 96.6 0.0013 4.4E-08 60.8 3.7 30 58-87 108-137 (543)
273 3pvs_A Replication-associated 96.5 0.0016 5.3E-08 58.8 4.0 31 58-88 50-80 (447)
274 3ozx_A RNAse L inhibitor; ATP 96.5 0.00083 2.9E-08 62.0 2.3 29 53-83 291-319 (538)
275 1ls1_A Signal recognition part 96.5 0.0026 8.8E-08 54.1 5.2 27 58-84 98-124 (295)
276 3p32_A Probable GTPase RV1496/ 96.5 0.0031 1.1E-07 55.0 5.8 28 56-83 77-104 (355)
277 1oix_A RAS-related protein RAB 96.5 0.0015 5E-08 51.5 3.3 23 59-81 30-52 (191)
278 1yqt_A RNAse L inhibitor; ATP- 96.5 0.001 3.6E-08 61.4 2.8 28 54-83 310-337 (538)
279 2dpy_A FLII, flagellum-specifi 96.5 0.0015 5.1E-08 58.8 3.7 31 52-84 153-183 (438)
280 3ux8_A Excinuclease ABC, A sub 96.5 0.00052 1.8E-08 65.1 0.7 33 45-79 337-369 (670)
281 2qby_A CDC6 homolog 1, cell di 96.5 0.0032 1.1E-07 54.6 5.7 23 60-82 47-69 (386)
282 2www_A Methylmalonic aciduria 96.5 0.0017 5.9E-08 56.6 3.9 26 58-83 74-99 (349)
283 3uk6_A RUVB-like 2; hexameric 96.5 0.0019 6.5E-08 56.1 4.2 25 60-84 72-96 (368)
284 1ypw_A Transitional endoplasmi 96.5 0.0023 7.8E-08 62.0 5.1 33 53-87 235-267 (806)
285 1sxj_A Activator 1 95 kDa subu 96.5 0.0017 5.8E-08 59.6 4.0 30 59-88 78-107 (516)
286 2ce7_A Cell division protein F 96.5 0.0015 5E-08 59.5 3.4 28 61-88 52-79 (476)
287 1nlf_A Regulatory protein REPA 96.5 0.0015 5.1E-08 54.9 3.3 29 53-83 27-55 (279)
288 3cf2_A TER ATPase, transitiona 96.5 0.0026 8.8E-08 61.3 5.3 28 61-88 241-268 (806)
289 3j16_B RLI1P; ribosome recycli 96.5 0.0011 3.6E-08 62.2 2.5 38 46-83 363-403 (608)
290 3lda_A DNA repair protein RAD5 96.5 0.0044 1.5E-07 55.0 6.4 28 52-81 174-201 (400)
291 3bk7_A ABC transporter ATP-bin 96.5 0.0012 4E-08 61.9 2.8 28 54-83 380-407 (607)
292 1tf7_A KAIC; homohexamer, hexa 96.4 0.00088 3E-08 61.7 1.8 36 45-82 27-65 (525)
293 2iw3_A Elongation factor 3A; a 96.4 0.00076 2.6E-08 66.2 1.3 33 46-80 451-483 (986)
294 2obl_A ESCN; ATPase, hydrolase 96.4 0.0017 5.8E-08 56.6 3.4 31 52-84 67-97 (347)
295 2dr3_A UPF0273 protein PH0284; 96.4 0.0021 7E-08 52.4 3.7 28 53-82 20-47 (247)
296 2r44_A Uncharacterized protein 96.4 0.0016 5.4E-08 56.0 3.1 26 61-86 49-74 (331)
297 3kl4_A SRP54, signal recogniti 96.4 0.0017 6E-08 58.2 3.4 29 57-85 96-124 (433)
298 2f9l_A RAB11B, member RAS onco 96.4 0.0018 6.1E-08 51.2 3.2 22 60-81 7-28 (199)
299 2v1u_A Cell division control p 96.4 0.0038 1.3E-07 54.2 5.5 23 60-82 46-68 (387)
300 3j16_B RLI1P; ribosome recycli 96.4 0.0016 5.5E-08 60.9 3.2 29 53-83 100-128 (608)
301 3vfd_A Spastin; ATPase, microt 96.4 0.0018 6E-08 57.2 3.3 30 60-89 150-179 (389)
302 2c9o_A RUVB-like 1; hexameric 96.4 0.0018 6E-08 58.5 3.4 23 61-83 66-88 (456)
303 2qby_B CDC6 homolog 3, cell di 96.4 0.0042 1.4E-07 54.1 5.7 24 59-82 46-69 (384)
304 2wsm_A Hydrogenase expression/ 96.4 0.0023 7.7E-08 51.4 3.6 26 58-83 30-55 (221)
305 1hqc_A RUVB; extended AAA-ATPa 96.4 0.0016 5.5E-08 55.5 2.9 27 61-87 41-67 (324)
306 4f4c_A Multidrug resistance pr 96.4 0.0006 2.1E-08 69.4 0.2 38 44-83 432-469 (1321)
307 1fnn_A CDC6P, cell division co 96.4 0.0022 7.4E-08 56.0 3.7 25 59-83 45-69 (389)
308 3ozx_A RNAse L inhibitor; ATP 96.4 0.0012 4.3E-08 60.9 2.3 27 54-82 23-49 (538)
309 2oap_1 GSPE-2, type II secreti 96.3 0.0012 4E-08 60.7 2.0 28 54-83 258-285 (511)
310 3kfv_A Tight junction protein 96.3 0.042 1.4E-06 46.8 11.5 23 61-86 148-170 (308)
311 1c9k_A COBU, adenosylcobinamid 96.3 0.0019 6.4E-08 50.9 2.9 24 61-85 2-25 (180)
312 2ffh_A Protein (FFH); SRP54, s 96.3 0.0057 2E-07 54.7 6.3 28 58-85 98-125 (425)
313 4f4c_A Multidrug resistance pr 96.3 0.00067 2.3E-08 69.1 0.2 49 33-83 1080-1130(1321)
314 1iqp_A RFCS; clamp loader, ext 96.3 0.003 1E-07 53.6 4.3 26 59-84 47-72 (327)
315 3ux8_A Excinuclease ABC, A sub 96.3 0.0012 4E-08 62.7 1.7 49 25-75 11-61 (670)
316 3co5_A Putative two-component 96.3 0.0012 4.1E-08 49.7 1.5 23 61-83 30-52 (143)
317 2orw_A Thymidine kinase; TMTK, 96.3 0.0029 9.8E-08 49.9 3.7 23 60-82 5-27 (184)
318 2bjv_A PSP operon transcriptio 96.3 0.0042 1.4E-07 51.5 4.9 23 61-83 32-54 (265)
319 2yv5_A YJEQ protein; hydrolase 96.3 0.0022 7.4E-08 54.8 3.2 23 59-82 166-188 (302)
320 1tq4_A IIGP1, interferon-induc 96.3 0.0021 7.2E-08 57.3 3.2 23 60-82 71-93 (413)
321 3g5u_A MCG1178, multidrug resi 96.3 0.002 7E-08 65.4 3.4 38 44-83 1047-1084(1284)
322 2zan_A Vacuolar protein sortin 96.3 0.0021 7E-08 57.9 3.1 28 60-87 169-197 (444)
323 2chq_A Replication factor C sm 96.2 0.0034 1.2E-07 53.1 4.2 24 60-83 40-63 (319)
324 2wji_A Ferrous iron transport 96.2 0.0024 8.3E-08 48.8 3.0 21 60-80 5-25 (165)
325 1pzn_A RAD51, DNA repair and r 96.2 0.0023 8E-08 55.7 3.1 29 52-82 127-155 (349)
326 2rcn_A Probable GTPase ENGC; Y 96.2 0.0023 7.9E-08 56.0 3.1 23 60-82 217-239 (358)
327 2iw3_A Elongation factor 3A; a 96.2 0.0007 2.4E-08 66.5 -0.3 37 45-83 688-724 (986)
328 1f2t_A RAD50 ABC-ATPase; DNA d 96.2 0.0028 9.6E-08 48.2 3.2 24 60-83 25-48 (149)
329 2j37_W Signal recognition part 96.2 0.0079 2.7E-07 55.0 6.7 29 56-84 99-127 (504)
330 2v3c_C SRP54, signal recogniti 96.2 0.0031 1.1E-07 56.6 3.9 28 56-83 97-124 (432)
331 1j8m_F SRP54, signal recogniti 96.2 0.0072 2.5E-07 51.4 5.9 27 58-84 98-124 (297)
332 3tqf_A HPR(Ser) kinase; transf 96.1 0.0032 1.1E-07 49.3 3.2 24 61-85 19-42 (181)
333 1u0l_A Probable GTPase ENGC; p 96.1 0.0022 7.4E-08 54.7 2.5 24 59-82 170-193 (301)
334 2p67_A LAO/AO transport system 96.1 0.0037 1.3E-07 54.2 4.0 27 57-83 55-81 (341)
335 2dyk_A GTP-binding protein; GT 96.1 0.0031 1.1E-07 47.5 3.1 22 60-81 3-24 (161)
336 2hf9_A Probable hydrogenase ni 96.1 0.0038 1.3E-07 50.2 3.7 26 58-83 38-63 (226)
337 1g8p_A Magnesium-chelatase 38 96.1 0.0021 7.2E-08 55.4 2.2 23 61-83 48-70 (350)
338 2qgz_A Helicase loader, putati 96.1 0.0034 1.2E-07 53.7 3.5 23 61-83 155-177 (308)
339 3g5u_A MCG1178, multidrug resi 96.1 0.0013 4.5E-08 66.8 0.9 37 45-83 405-441 (1284)
340 1a5t_A Delta prime, HOLB; zinc 96.1 0.0068 2.3E-07 52.3 5.3 27 60-86 26-52 (334)
341 1sxj_B Activator 1 37 kDa subu 96.1 0.0044 1.5E-07 52.5 4.0 25 60-84 44-68 (323)
342 1qhl_A Protein (cell division 96.1 0.00064 2.2E-08 55.7 -1.2 24 60-83 29-52 (227)
343 1pui_A ENGB, probable GTP-bind 96.1 0.0018 6E-08 51.5 1.4 22 59-80 27-48 (210)
344 2ged_A SR-beta, signal recogni 96.1 0.0085 2.9E-07 46.7 5.4 24 58-81 48-71 (193)
345 1t9h_A YLOQ, probable GTPase E 96.1 0.0017 5.7E-08 55.7 1.3 28 53-82 170-197 (307)
346 4aby_A DNA repair protein RECN 96.0 0.00094 3.2E-08 59.3 -0.4 32 49-83 54-85 (415)
347 3szr_A Interferon-induced GTP- 96.0 0.0021 7.3E-08 60.2 2.0 25 58-82 45-69 (608)
348 2vf7_A UVRA2, excinuclease ABC 96.0 0.0019 6.6E-08 62.5 1.6 31 43-75 23-53 (842)
349 2zej_A Dardarin, leucine-rich 96.0 0.0029 1E-07 49.3 2.5 20 61-80 5-24 (184)
350 1ypw_A Transitional endoplasmi 96.0 0.0036 1.2E-07 60.6 3.5 29 61-89 514-542 (806)
351 3hu3_A Transitional endoplasmi 96.0 0.0033 1.1E-07 57.4 3.1 27 61-87 241-267 (489)
352 2wjg_A FEOB, ferrous iron tran 96.0 0.0038 1.3E-07 48.5 3.0 22 59-80 8-29 (188)
353 2z4s_A Chromosomal replication 96.0 0.004 1.4E-07 56.0 3.5 23 61-83 133-155 (440)
354 3thx_B DNA mismatch repair pro 96.0 0.002 6.8E-08 63.0 1.5 30 49-80 666-695 (918)
355 1nrj_B SR-beta, signal recogni 96.0 0.0054 1.8E-07 49.0 3.9 26 57-82 11-36 (218)
356 3u61_B DNA polymerase accessor 95.9 0.0048 1.6E-07 52.7 3.8 29 60-88 50-78 (324)
357 2r2a_A Uncharacterized protein 95.9 0.0049 1.7E-07 49.3 3.5 24 58-81 5-28 (199)
358 1z2a_A RAS-related protein RAB 95.9 0.0045 1.5E-07 46.8 3.2 22 60-81 7-28 (168)
359 3nbx_X ATPase RAVA; AAA+ ATPas 95.9 0.008 2.7E-07 54.9 5.3 24 61-84 44-67 (500)
360 1jr3_A DNA polymerase III subu 95.9 0.0047 1.6E-07 53.5 3.6 26 60-85 40-65 (373)
361 3pih_A Uvrabc system protein A 95.9 0.0027 9.1E-08 62.1 2.2 31 43-75 11-41 (916)
362 2ce2_X GTPase HRAS; signaling 95.9 0.0046 1.6E-07 46.4 3.2 21 61-81 6-26 (166)
363 2gj8_A MNME, tRNA modification 95.9 0.0044 1.5E-07 47.8 3.0 22 60-81 6-27 (172)
364 1svi_A GTP-binding protein YSX 95.9 0.0066 2.3E-07 47.3 4.0 23 58-80 23-45 (195)
365 2lkc_A Translation initiation 95.9 0.0073 2.5E-07 46.2 4.2 23 58-80 8-30 (178)
366 1kao_A RAP2A; GTP-binding prot 95.9 0.005 1.7E-07 46.4 3.2 20 61-80 6-25 (167)
367 1m2o_B GTP-binding protein SAR 95.8 0.0045 1.5E-07 48.5 2.9 21 60-80 25-45 (190)
368 3pqc_A Probable GTP-binding pr 95.8 0.0071 2.4E-07 47.0 4.0 24 58-81 23-46 (195)
369 1u8z_A RAS-related protein RAL 95.8 0.0053 1.8E-07 46.3 3.2 21 61-81 7-27 (168)
370 1wb9_A DNA mismatch repair pro 95.8 0.0031 1.1E-07 60.9 2.1 23 59-81 608-630 (800)
371 2ygr_A Uvrabc system protein A 95.8 0.0027 9.3E-08 62.2 1.6 31 43-75 33-63 (993)
372 1yrb_A ATP(GTP)binding protein 95.8 0.0063 2.2E-07 50.1 3.7 26 58-83 14-39 (262)
373 2xxa_A Signal recognition part 95.8 0.0076 2.6E-07 54.1 4.4 29 57-85 99-127 (433)
374 2r6f_A Excinuclease ABC subuni 95.8 0.0028 9.6E-08 62.0 1.6 31 43-75 31-61 (972)
375 3k1j_A LON protease, ATP-depen 95.7 0.0048 1.7E-07 57.7 3.2 24 61-84 63-86 (604)
376 1r6b_X CLPA protein; AAA+, N-t 95.7 0.017 5.8E-07 55.4 7.0 26 61-86 491-516 (758)
377 1ek0_A Protein (GTP-binding pr 95.7 0.0061 2.1E-07 46.1 3.2 21 61-81 6-26 (170)
378 1jwy_B Dynamin A GTPase domain 95.7 0.013 4.5E-07 49.6 5.6 25 57-81 23-47 (315)
379 3tvt_A Disks large 1 tumor sup 95.7 0.023 7.8E-07 48.2 7.0 65 178-252 212-277 (292)
380 3thx_A DNA mismatch repair pro 95.7 0.0031 1.1E-07 61.8 1.7 22 59-80 663-684 (934)
381 1wms_A RAB-9, RAB9, RAS-relate 95.7 0.0062 2.1E-07 46.6 3.2 21 60-80 9-29 (177)
382 1g16_A RAS-related protein SEC 95.7 0.0063 2.2E-07 46.1 3.2 20 61-80 6-25 (170)
383 1ky3_A GTP-binding protein YPT 95.7 0.0063 2.2E-07 46.6 3.2 22 60-81 10-31 (182)
384 3qf7_A RAD50; ABC-ATPase, ATPa 95.7 0.0057 1.9E-07 53.6 3.2 23 60-82 25-47 (365)
385 2qnr_A Septin-2, protein NEDD5 95.7 0.0048 1.7E-07 52.6 2.7 20 61-80 21-40 (301)
386 3hr8_A Protein RECA; alpha and 95.7 0.0067 2.3E-07 53.0 3.6 24 60-83 63-86 (356)
387 1c1y_A RAS-related protein RAP 95.7 0.0065 2.2E-07 45.9 3.2 20 61-80 6-25 (167)
388 2b8t_A Thymidine kinase; deoxy 95.7 0.0074 2.5E-07 49.2 3.6 25 60-84 14-38 (223)
389 1z0j_A RAB-22, RAS-related pro 95.7 0.0065 2.2E-07 46.0 3.2 21 61-81 9-29 (170)
390 1z08_A RAS-related protein RAB 95.7 0.0065 2.2E-07 46.1 3.2 21 60-80 8-28 (170)
391 3qks_A DNA double-strand break 95.7 0.0078 2.7E-07 48.1 3.7 26 59-84 24-49 (203)
392 2erx_A GTP-binding protein DI- 95.6 0.0063 2.1E-07 46.1 3.0 20 61-80 6-25 (172)
393 3pxg_A Negative regulator of g 95.6 0.0057 2E-07 55.4 3.1 24 61-84 204-227 (468)
394 1f6b_A SAR1; gtpases, N-termin 95.6 0.002 6.8E-08 51.1 0.1 20 61-80 28-47 (198)
395 2aka_B Dynamin-1; fusion prote 95.6 0.015 5.1E-07 48.8 5.5 23 58-80 26-48 (299)
396 2nzj_A GTP-binding protein REM 95.6 0.0064 2.2E-07 46.4 3.0 21 60-80 6-26 (175)
397 1ojl_A Transcriptional regulat 95.6 0.014 4.8E-07 49.7 5.4 23 61-83 28-50 (304)
398 3q72_A GTP-binding protein RAD 95.6 0.0061 2.1E-07 46.1 2.8 20 60-79 4-23 (166)
399 3q85_A GTP-binding protein REM 95.6 0.0066 2.3E-07 46.0 3.0 20 61-80 5-24 (169)
400 2fn4_A P23, RAS-related protei 95.6 0.0069 2.4E-07 46.4 3.1 23 59-81 10-32 (181)
401 2fna_A Conserved hypothetical 95.6 0.008 2.7E-07 51.5 3.8 27 59-85 31-57 (357)
402 1r2q_A RAS-related protein RAB 95.6 0.0076 2.6E-07 45.6 3.2 21 60-80 8-28 (170)
403 3con_A GTPase NRAS; structural 95.6 0.0074 2.5E-07 46.9 3.2 22 60-81 23-44 (190)
404 3clv_A RAB5 protein, putative; 95.5 0.0096 3.3E-07 46.4 3.8 22 60-81 9-30 (208)
405 1tf7_A KAIC; homohexamer, hexa 95.5 0.0083 2.8E-07 55.1 3.8 30 52-83 277-306 (525)
406 4dey_A Voltage-dependent L-typ 95.5 0.31 1E-05 41.9 13.3 70 178-254 253-323 (337)
407 4dsu_A GTPase KRAS, isoform 2B 95.5 0.0078 2.7E-07 46.5 3.2 21 60-80 6-26 (189)
408 3pxi_A Negative regulator of g 95.5 0.025 8.4E-07 54.3 7.2 24 60-83 523-546 (758)
409 3k53_A Ferrous iron transport 95.5 0.0069 2.3E-07 50.6 3.0 22 60-81 5-26 (271)
410 3bc1_A RAS-related protein RAB 95.5 0.008 2.7E-07 46.5 3.2 21 60-80 13-33 (195)
411 1upt_A ARL1, ADP-ribosylation 95.5 0.0083 2.8E-07 45.5 3.2 21 60-80 9-29 (171)
412 2vhj_A Ntpase P4, P4; non- hyd 95.5 0.009 3.1E-07 51.4 3.6 26 60-85 125-150 (331)
413 2ygr_A Uvrabc system protein A 95.5 0.0029 1E-07 62.0 0.6 32 45-78 657-688 (993)
414 1r8s_A ADP-ribosylation factor 95.5 0.0086 2.9E-07 45.1 3.2 21 61-81 3-23 (164)
415 2qtf_A Protein HFLX, GTP-bindi 95.5 0.014 4.8E-07 51.1 4.9 24 58-81 179-202 (364)
416 2y8e_A RAB-protein 6, GH09086P 95.5 0.0085 2.9E-07 45.8 3.2 21 60-80 16-36 (179)
417 2qen_A Walker-type ATPase; unk 95.5 0.0087 3E-07 51.1 3.5 24 60-83 33-56 (350)
418 2zr9_A Protein RECA, recombina 95.5 0.0088 3E-07 52.1 3.6 28 53-82 58-85 (349)
419 2oil_A CATX-8, RAS-related pro 95.5 0.0085 2.9E-07 46.7 3.2 23 59-81 26-48 (193)
420 3tw8_B RAS-related protein RAB 95.5 0.0075 2.6E-07 46.2 2.8 22 59-80 10-31 (181)
421 2cxx_A Probable GTP-binding pr 95.4 0.0089 3E-07 46.3 3.2 21 60-80 3-23 (190)
422 1ega_A Protein (GTP-binding pr 95.4 0.0084 2.9E-07 51.0 3.3 22 60-81 10-31 (301)
423 1z0f_A RAB14, member RAS oncog 95.4 0.009 3.1E-07 45.6 3.2 23 59-81 16-38 (179)
424 2qag_C Septin-7; cell cycle, c 95.4 0.0062 2.1E-07 54.4 2.5 21 61-81 34-54 (418)
425 2a9k_A RAS-related protein RAL 95.4 0.0091 3.1E-07 45.9 3.2 22 60-81 20-41 (187)
426 1m7b_A RND3/RHOE small GTP-bin 95.4 0.0091 3.1E-07 46.3 3.2 22 60-81 9-30 (184)
427 2bme_A RAB4A, RAS-related prot 95.4 0.0094 3.2E-07 46.0 3.2 22 60-81 12-33 (186)
428 3iby_A Ferrous iron transport 95.4 0.0095 3.2E-07 49.5 3.3 23 59-81 2-24 (256)
429 2hxs_A RAB-26, RAS-related pro 95.4 0.009 3.1E-07 45.7 3.0 21 60-80 8-28 (178)
430 3lxx_A GTPase IMAP family memb 95.3 0.0086 2.9E-07 48.8 3.0 22 59-80 30-51 (239)
431 2g6b_A RAS-related protein RAB 95.3 0.0099 3.4E-07 45.6 3.2 21 60-80 12-32 (180)
432 3t34_A Dynamin-related protein 95.3 0.014 4.8E-07 50.8 4.5 24 57-80 33-56 (360)
433 3bh0_A DNAB-like replicative h 95.3 0.011 3.8E-07 50.6 3.8 29 53-83 65-93 (315)
434 3cf2_A TER ATPase, transitiona 95.3 0.0089 3E-07 57.6 3.4 29 61-89 514-542 (806)
435 3ihw_A Centg3; RAS, centaurin, 95.3 0.01 3.5E-07 46.3 3.2 22 59-80 21-42 (184)
436 2efe_B Small GTP-binding prote 95.3 0.01 3.5E-07 45.5 3.2 21 60-80 14-34 (181)
437 1ewq_A DNA mismatch repair pro 95.3 0.0088 3E-07 57.5 3.2 23 60-82 578-600 (765)
438 1mh1_A RAC1; GTP-binding, GTPa 95.3 0.011 3.6E-07 45.6 3.2 20 61-80 8-27 (186)
439 3kkq_A RAS-related protein M-R 95.3 0.011 3.6E-07 45.6 3.2 22 60-81 20-41 (183)
440 4dhe_A Probable GTP-binding pr 95.3 0.0089 3.1E-07 47.8 2.8 25 57-81 28-52 (223)
441 2r6f_A Excinuclease ABC subuni 95.3 0.0028 9.5E-08 62.0 -0.3 32 45-78 639-670 (972)
442 2bov_A RAla, RAS-related prote 95.3 0.011 3.7E-07 46.5 3.2 23 59-81 15-37 (206)
443 3bwd_D RAC-like GTP-binding pr 95.3 0.014 4.7E-07 44.8 3.8 21 60-80 10-30 (182)
444 2fg5_A RAB-22B, RAS-related pr 95.2 0.011 3.7E-07 46.3 3.1 22 60-81 25-46 (192)
445 1e69_A Chromosome segregation 95.2 0.0078 2.7E-07 51.6 2.5 23 60-82 26-48 (322)
446 2r6a_A DNAB helicase, replicat 95.2 0.013 4.4E-07 52.8 4.0 29 53-83 200-228 (454)
447 1fzq_A ADP-ribosylation factor 95.2 0.0098 3.3E-07 46.1 2.8 23 59-81 17-39 (181)
448 3t5g_A GTP-binding protein RHE 95.2 0.011 3.9E-07 45.4 3.2 21 60-80 8-28 (181)
449 2zts_A Putative uncharacterize 95.2 0.012 4.2E-07 47.8 3.5 27 53-81 27-53 (251)
450 2gf9_A RAS-related protein RAB 95.2 0.011 3.9E-07 45.9 3.2 22 59-80 23-44 (189)
451 3t1o_A Gliding protein MGLA; G 95.2 0.0098 3.3E-07 46.2 2.7 24 60-83 16-39 (198)
452 3oes_A GTPase rhebl1; small GT 95.2 0.012 3.9E-07 46.4 3.2 22 59-80 25-46 (201)
453 3tkl_A RAS-related protein RAB 95.2 0.012 4E-07 45.9 3.2 22 59-80 17-38 (196)
454 2vf7_A UVRA2, excinuclease ABC 95.2 0.0021 7.3E-08 62.2 -1.4 34 46-81 513-547 (842)
455 1vg8_A RAS-related protein RAB 95.2 0.012 4.1E-07 46.3 3.2 22 60-81 10-31 (207)
456 2gf0_A GTP-binding protein DI- 95.2 0.012 4.1E-07 45.9 3.1 21 60-80 10-30 (199)
457 3dz8_A RAS-related protein RAB 95.1 0.012 4.1E-07 45.9 3.2 23 59-81 24-46 (191)
458 2iwr_A Centaurin gamma 1; ANK 95.1 0.01 3.6E-07 45.4 2.7 22 60-81 9-30 (178)
459 2atv_A RERG, RAS-like estrogen 95.1 0.012 4.2E-07 46.0 3.2 22 60-81 30-51 (196)
460 3ice_A Transcription terminati 95.1 0.016 5.4E-07 51.2 4.0 30 52-83 170-199 (422)
461 3qkt_A DNA double-strand break 95.1 0.011 3.9E-07 51.0 3.2 25 59-83 24-48 (339)
462 2fh5_B SR-beta, signal recogni 95.1 0.014 4.8E-07 46.3 3.5 23 59-81 8-30 (214)
463 1w1w_A Structural maintenance 95.1 0.013 4.5E-07 52.3 3.7 26 59-84 27-52 (430)
464 1moz_A ARL1, ADP-ribosylation 95.1 0.008 2.7E-07 46.3 2.0 21 59-79 19-39 (183)
465 3b1v_A Ferrous iron uptake tra 95.1 0.011 3.9E-07 49.5 3.0 21 60-80 5-25 (272)
466 1z06_A RAS-related protein RAB 95.1 0.013 4.4E-07 45.6 3.2 22 59-80 21-42 (189)
467 1ni3_A YCHF GTPase, YCHF GTP-b 95.1 0.015 5E-07 51.5 3.8 22 59-80 21-42 (392)
468 2a5j_A RAS-related protein RAB 95.1 0.013 4.5E-07 45.7 3.2 21 60-80 23-43 (191)
469 2ew1_A RAS-related protein RAB 95.1 0.013 4.4E-07 46.5 3.2 22 60-81 28-49 (201)
470 1zd9_A ADP-ribosylation factor 95.1 0.013 4.6E-07 45.5 3.2 21 60-80 24-44 (188)
471 2p5s_A RAS and EF-hand domain 95.1 0.013 4.5E-07 46.0 3.2 22 59-80 29-50 (199)
472 3shw_A Tight junction protein 95.0 0.13 4.5E-06 46.4 10.0 24 58-84 224-247 (468)
473 3pxi_A Negative regulator of g 95.0 0.011 3.8E-07 56.7 3.1 23 61-83 204-226 (758)
474 3pih_A Uvrabc system protein A 95.0 0.01 3.4E-07 58.1 2.8 28 46-75 600-627 (916)
475 3c5c_A RAS-like protein 12; GD 95.0 0.014 4.7E-07 45.5 3.2 22 60-81 23-44 (187)
476 1ksh_A ARF-like protein 2; sma 95.0 0.012 4.2E-07 45.4 2.8 22 59-80 19-40 (186)
477 1xx6_A Thymidine kinase; NESG, 95.0 0.017 5.8E-07 45.8 3.6 25 59-83 9-33 (191)
478 2o5v_A DNA replication and rep 95.0 0.013 4.4E-07 51.3 3.2 21 60-80 28-48 (359)
479 2bcg_Y Protein YP2, GTP-bindin 95.0 0.014 4.7E-07 46.0 3.2 21 60-80 10-30 (206)
480 2o8b_B DNA mismatch repair pro 95.0 0.0082 2.8E-07 59.5 2.1 20 59-78 790-809 (1022)
481 1x3s_A RAS-related protein RAB 95.0 0.014 4.9E-07 45.3 3.2 22 60-81 17-38 (195)
482 1gwn_A RHO-related GTP-binding 95.0 0.014 4.8E-07 46.4 3.2 22 60-81 30-51 (205)
483 1zbd_A Rabphilin-3A; G protein 95.0 0.013 4.6E-07 46.0 3.0 21 60-80 10-30 (203)
484 1zj6_A ADP-ribosylation factor 95.0 0.014 4.7E-07 45.3 3.0 21 60-80 18-38 (187)
485 2fv8_A H6, RHO-related GTP-bin 95.0 0.014 4.9E-07 46.1 3.1 21 60-80 27-47 (207)
486 3reg_A RHO-like small GTPase; 94.9 0.015 5.1E-07 45.4 3.2 22 60-81 25-46 (194)
487 3cbq_A GTP-binding protein REM 94.9 0.011 3.7E-07 46.6 2.3 21 59-79 24-44 (195)
488 2z43_A DNA repair and recombin 94.9 0.016 5.3E-07 49.8 3.5 28 53-82 104-131 (324)
489 2e87_A Hypothetical protein PH 94.9 0.045 1.5E-06 47.6 6.4 24 58-81 167-190 (357)
490 2o52_A RAS-related protein RAB 94.9 0.014 4.9E-07 45.9 3.0 21 60-80 27-47 (200)
491 3cph_A RAS-related protein SEC 94.9 0.015 5.3E-07 45.9 3.2 22 59-80 21-42 (213)
492 1v5w_A DMC1, meiotic recombina 94.9 0.014 4.6E-07 50.7 3.0 27 53-81 119-145 (343)
493 2xtp_A GTPase IMAP family memb 94.9 0.014 4.8E-07 48.1 3.0 22 59-80 23-44 (260)
494 1ko7_A HPR kinase/phosphatase; 94.9 0.012 4E-07 50.5 2.4 27 56-85 144-170 (314)
495 1u94_A RECA protein, recombina 94.9 0.016 5.4E-07 50.6 3.3 23 60-82 65-87 (356)
496 2il1_A RAB12; G-protein, GDP, 94.8 0.014 5E-07 45.5 2.8 21 60-80 28-48 (192)
497 1r6b_X CLPA protein; AAA+, N-t 94.8 0.028 9.6E-07 53.8 5.3 24 61-84 210-233 (758)
498 2gco_A H9, RHO-related GTP-bin 94.8 0.017 5.7E-07 45.5 3.2 21 60-80 27-47 (201)
499 2cjw_A GTP-binding protein GEM 94.8 0.017 5.8E-07 45.3 3.2 22 60-81 8-29 (192)
500 2h17_A ADP-ribosylation factor 94.8 0.014 4.8E-07 45.0 2.7 22 59-80 22-43 (181)
No 1
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.96 E-value=2.8e-28 Score=199.87 Aligned_cols=183 Identities=20% Similarity=0.303 Sum_probs=134.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcc----cccCCCCc--hHHHHHHhccccch---HHHHHHHHHHH-HHHHHHHHHh-
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKAS----LKSTPPSS--IMSLREKFDAHDSL---LRRAYYSLGNY-IAAQDIKQDL- 128 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~----~~~~p~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~i~~~l- 128 (259)
+|+|+|++||||||+++.|+++|... ...+|+++ +..+++.+.+...+ ....+|+++++ +..+.+.+++
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p~l~ 83 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALK 83 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 39999999999999999999999532 24577764 46778777654332 23345666664 4667788877
Q ss_pred CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHHHH
Q psy16563 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENELK 207 (259)
Q Consensus 129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~~e 207 (259)
+|..||+|||++|+++|+.. +++++ .+....+..+....+.||++|||++||+++++|+.+|+.. ++.+.+
T Consensus 84 ~g~~Vi~DRy~~S~~ayq~~---~~~~~---~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~-- 155 (205)
T 4hlc_A 84 EGKVVLCDRYIDSSLAYQGY---ARGIG---VEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQE-- 155 (205)
T ss_dssp TTCEEEEECCHHHHHHHTTT---TTSSC---HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHH--
T ss_pred cCCEEEecCcccchHHHHhc---cccch---HHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhcc--
Confidence 69999999999999999753 23331 2234555566666788999999999999999999988742 222221
Q ss_pred HHHHHHHHHHHHHHhcC--CC-CeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 208 KNAKFRELLTTIYRNMN--NP-ELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 208 ~~~~~~~~~~~~y~~~~--~~-~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
..+|++++++.|.++. .+ .+++||++.+ ++++.++|.+.|.+.
T Consensus 156 -~~~f~~~v~~~Y~~l~~~~~~~~~~IDa~~~-~e~V~~~i~~~i~~~ 201 (205)
T 4hlc_A 156 -DLKFHEKVIEGYQEIIHNESQRFKSVNADQP-LENVVEDTYQTIIKY 201 (205)
T ss_dssp -HHHHHHHHHHHHHHHHHSCCTTEEEEETTSC-HHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHhCCCCEEEEECCCC-HHHHHHHHHHHHHHH
Confidence 5678999999999983 33 4999999987 999999999888764
No 2
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.95 E-value=5.8e-27 Score=192.99 Aligned_cols=183 Identities=21% Similarity=0.270 Sum_probs=136.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhccc------ccCCCCc--hHHHHHHhccc-----cch---HHHHHHHHHH-HHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASL------KSTPPSS--IMSLREKFDAH-----DSL---LRRAYYSLGN-YIAAQ 122 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~------~~~p~~~--~~~~~~~~~~~-----~~~---~~~~~~~~~~-~~~~~ 122 (259)
+|+|+|++||||||+++.|++++.... ..+|+++ +..+++.+... ..+ ....+|.+.+ ++..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~~~ 84 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVET 84 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999986543 3567654 36677776521 122 2233455555 55667
Q ss_pred HHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCch
Q psy16563 123 DIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL 201 (259)
Q Consensus 123 ~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~ 201 (259)
.|.|++ +|.+||+|||++|+++|+.+ +.+++ .+....+..|....+.||++|||++|++++++|+.+|+..++
T Consensus 85 ~i~paL~~g~~VI~DRy~~S~~AYq~~---~~g~~---~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~dr 158 (213)
T 4tmk_A 85 VIKPALANGTWVIGDRHDLSTQAYQGG---GRGID---QHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDR 158 (213)
T ss_dssp THHHHHHTTCEEEEECCHHHHHHHTTT---TTCCC---HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCCT
T ss_pred HHHHHHHCCCEEEEcCcHhHHHHHccc---ccCCC---HHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCccc
Confidence 788887 69999999999999999853 22321 122344555666778999999999999999999999975433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 202 EENELKKNAKFRELLTTIYRNMN--NPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 202 ~~~~~e~~~~~~~~~~~~y~~~~--~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
.+.+ ..+|++++++.|.++. ...+++||++.+ ++++.++|.+.|...
T Consensus 159 ~E~~---~~~f~~rv~~~y~~la~~~~~~~vIDa~~s-~eeV~~~I~~~l~~~ 207 (213)
T 4tmk_A 159 IEQE---SFDFFNRTRARYLELAAQDKSIHTIDATQP-LEAVMDAIRTTVTHW 207 (213)
T ss_dssp TTTS---CHHHHHHHHHHHHHHHHTCTTEEEEETTSC-HHHHHHHHHHHHHHH
T ss_pred hhhh---HHHHHHHHHHHHHHHHHHCCcEEEECCCCC-HHHHHHHHHHHHHHH
Confidence 3321 4678999999999884 246999999987 999999999998765
No 3
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.95 E-value=1.5e-26 Score=188.46 Aligned_cols=180 Identities=25% Similarity=0.374 Sum_probs=133.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcc-----cccCCCCc--hHHHHHHhccccc--hHHHHHHHHHHHHHHHHHHHHh-
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSS--IMSLREKFDAHDS--LLRRAYYSLGNYIAAQDIKQDL- 128 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~-----~~~~p~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~l- 128 (259)
++|+|+|++||||||+++.|+++|... ...+|+++ ++.+++.+..... .....+|++.+++....+.+.+
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~ 80 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLS 80 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999999654 34678765 3666765543321 2233456677777777888887
Q ss_pred CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK 208 (259)
Q Consensus 129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~ 208 (259)
+|..||+|||++|+++|+.+ +.+.+ .+....+..+....+.||++|||++||+++.+|...|++.+
T Consensus 81 ~g~~Vi~DRy~~S~~ayq~~---~~~~~---~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e-------- 146 (197)
T 3hjn_A 81 EGYAVLLDRYTDSSVAYQGF---GRNLG---KEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFE-------- 146 (197)
T ss_dssp TTCEEEEESCHHHHHHHHTT---TTCSC---HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTC--------
T ss_pred CCCeEEecccchHHHHHHHh---ccCCC---HHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccc--------
Confidence 58999999999999999853 22221 22244555566667889999999999999999976654321
Q ss_pred HHHHHHHHHHHHHhcC--CC-CeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 209 NAKFRELLTTIYRNMN--NP-ELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 209 ~~~~~~~~~~~y~~~~--~~-~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
..+|++++++.|.++. .+ .+++||++.+ ++++.++|.+.|++..
T Consensus 147 ~~ef~~rv~~~y~~la~~~~~~~~~IDa~~~-~eeV~~~I~~~i~~rl 193 (197)
T 3hjn_A 147 KREFLERVREGYLVLAREHPERIVVLDGKRS-IEEIHRDVVREVKRRW 193 (197)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTTEEEEETTSC-HHHHHHHHHHHHSCC-
T ss_pred cHHHHHHHHHHHHHHHHhCCCCEEEEcCCCC-HHHHHHHHHHHHHHHh
Confidence 2358899999999884 33 4899999987 9999999999998753
No 4
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.94 E-value=2.2e-26 Score=189.60 Aligned_cols=187 Identities=22% Similarity=0.287 Sum_probs=138.1
Q ss_pred cCCCCCeEEEEcCCCCcHHHHHHHHHHHhhccc-----ccCCCCc--hHHHHHHhcccc--ch---HHHHHHHHHHHH-H
Q psy16563 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL-----KSTPPSS--IMSLREKFDAHD--SL---LRRAYYSLGNYI-A 120 (259)
Q Consensus 54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~-----~~~p~~~--~~~~~~~~~~~~--~~---~~~~~~~~~~~~-~ 120 (259)
.+|.+ |+|+|++||||||+++.|++++.... ..+|+++ +..+++.+.+.. .+ ....+|+++++. +
T Consensus 4 m~g~~--i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~ 81 (213)
T 4edh_A 4 MTGLF--VTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHL 81 (213)
T ss_dssp -CCEE--EEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCceE--EEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34444 99999999999999999999997543 3567654 356777665432 12 233556666654 5
Q ss_pred HHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563 121 AQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF 199 (259)
Q Consensus 121 ~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~ 199 (259)
.+.+.+++ +|..||+|||++|+++|+.+ +.+++ .+....+..|....+.||++|||++|++++++|+.+|+..
T Consensus 82 ~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~---~~g~~---~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~ 155 (213)
T 4edh_A 82 AGVIRPALARGAVVLCDRFTDATYAYQGG---GRGLP---EARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRL 155 (213)
T ss_dssp HHTHHHHHHTTCEEEEESCHHHHHHHTTT---TTCCC---HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSC
T ss_pred HHHHHHHHHCCCEEEECccHhHHHHHhhh---ccCCC---HHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence 67788877 69999999999999999864 22321 1234555556666789999999999999999999999743
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcC--CC-CeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 200 TLEENELKKNAKFRELLTTIYRNMN--NP-ELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 200 ~~~~~~~e~~~~~~~~~~~~y~~~~--~~-~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
++.+.+ ..++++++.+.|.++. .+ .+++||++.+ ++++.++|.+.|...
T Consensus 156 dr~E~~---~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s-~eeV~~~I~~~l~~~ 207 (213)
T 4edh_A 156 DRFEQE---DRRFFEAVRQTYLQRAAQAPERYQVLDAGLP-LAEVQAGLDRLLPNL 207 (213)
T ss_dssp CTTTTS---CHHHHHHHHHHHHHHHHHCTTTEEEEETTSC-HHHHHHHHHHHHHHH
T ss_pred Cccccc---HHHHHHHHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHHHHHHHHHHH
Confidence 333321 3568899999998873 33 5999999987 999999999998764
No 5
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.94 E-value=6.6e-27 Score=194.23 Aligned_cols=188 Identities=24% Similarity=0.296 Sum_probs=134.6
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc---------cccCCCCc--hHHHHHHhcccc--chHHHHHHHHHHHH
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS---------LKSTPPSS--IMSLREKFDAHD--SLLRRAYYSLGNYI 119 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~---------~~~~p~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~ 119 (259)
+.+|.+ |+|+|++||||||+++.|+++++.. .+++|+++ +..+++.+.+.. ......+|.++++.
T Consensus 22 m~~g~~--I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~ 99 (227)
T 3v9p_A 22 MARGKF--ITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQPMDLETEALLMFAGRRE 99 (227)
T ss_dssp -CCCCE--EEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ccCCeE--EEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 344544 9999999999999999999999654 24567654 355677665432 12334556666654
Q ss_pred -HHHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563 120 -AAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197 (259)
Q Consensus 120 -~~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~ 197 (259)
..+.+++++ +|..||+|||++|+++|+.+ +.+++ .+....+..|....+.||++|||++|++++.+|+.+|+
T Consensus 100 ~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~---~~gl~---~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~ 173 (227)
T 3v9p_A 100 HLALVIEPALARGDWVVSDRFTDATFAYQGG---GRGLP---RDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVR 173 (227)
T ss_dssp HHHHTHHHHHHTTCEEEEECCHHHHHHHHTT---TTCCC---HHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCC
T ss_pred HHHHHHHHHHHcCCEEEEeccHhHHHHHhhh---ccCCC---HHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 556788877 69999999999999999853 22221 12345555666677899999999999999999999997
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhcC--CC-CeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 198 NFTLEENELKKNAKFRELLTTIYRNMN--NP-ELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 198 ~~~~~~~~~e~~~~~~~~~~~~y~~~~--~~-~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
..++.+.+ ..+|++++.+.|.++. .+ .+++||++.+ ++++.++|.+.|..+
T Consensus 174 ~~dr~E~~---~~ef~~rv~~~Y~~la~~~~~~~~vIDa~~s-~eeV~~~I~~~l~~l 227 (227)
T 3v9p_A 174 MPDKFESE---SDAFFARTRAEYLRRAQEAPHRFVIVDSSEP-IAQIRKQLEGVLAAL 227 (227)
T ss_dssp CC---CCH---HHHHHHHHHHHHHHHHHHCTTTEEEEETTSC-HHHHHHHHHHHHHHC
T ss_pred Cccchhhh---hHHHHHHHHHHHHHHHHHhcCCEEEEeCCCC-HHHHHHHHHHHHHhC
Confidence 43333321 4678999999999884 33 5999999987 999999999998753
No 6
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.94 E-value=3.9e-26 Score=190.61 Aligned_cols=185 Identities=24% Similarity=0.330 Sum_probs=132.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhccc------ccCCCCc--hHHHHHHhccc---cch---HHHHHHHHHHH-HHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASL------KSTPPSS--IMSLREKFDAH---DSL---LRRAYYSLGNY-IAAQD 123 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~------~~~p~~~--~~~~~~~~~~~---~~~---~~~~~~~~~~~-~~~~~ 123 (259)
.+|+|+|++||||||+++.|++++.... +.+|+++ +..+++.+..+ ..+ ....+|.++++ ...+.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~~~ 107 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVENV 107 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999999987543 3466654 36677777421 122 23334566654 45567
Q ss_pred HHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchH
Q psy16563 124 IKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE 202 (259)
Q Consensus 124 i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~ 202 (259)
+.+++ +|.+||+|||++|+++|+.+ +.+++ .+....+..|....+.||++|||++|++++++|+.+|+..++.
T Consensus 108 I~paL~~g~~VI~DRy~~S~~AYq~~---~rgl~---~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~ 181 (236)
T 3lv8_A 108 IKPALARGEWVVGDRHDMSSQAYQGG---GRQIA---PSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRI 181 (236)
T ss_dssp HHHHHHTTCEEEEESCHHHHHHHTTT---TTCCC---HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCTT
T ss_pred HHHHHHcCCEEEEeeecchHHhhhhh---ccCCC---HHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcchh
Confidence 88887 69999999999999999864 22321 1234455566666789999999999999999999999753333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 203 ENELKKNAKFRELLTTIYRNMN--NPELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 203 ~~~~e~~~~~~~~~~~~y~~~~--~~~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
+.+ ..++++++.+.|.++. .+.+++||++.+ ++++.++|.+.|....
T Consensus 182 E~~---~~~~~~rv~~~y~~la~~~~~~~vIDa~~s-ieeV~~~I~~~l~~~l 230 (236)
T 3lv8_A 182 EKM---DISFFERARERYLELANSDDSVVMIDAAQS-IEQVTADIRRALQDWL 230 (236)
T ss_dssp TTS---CHHHHHHHHHHHHHHHHHCTTEEEEETTSC-HHHHHHHHHHHHHHHH
T ss_pred hhh---HHHHHHHHHHHHHHHHHHCCCEEEEeCCCC-HHHHHHHHHHHHHHHH
Confidence 321 3578899999998884 345999999987 9999999999997654
No 7
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.93 E-value=1.5e-25 Score=184.62 Aligned_cols=179 Identities=25% Similarity=0.335 Sum_probs=135.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhc--ccccCCC-Cc--hHHHHHHhcccc-c---hHHHHHHHHHHHHHHHHHHHHh-
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKA--SLKSTPP-SS--IMSLREKFDAHD-S---LLRRAYYSLGNYIAAQDIKQDL- 128 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~--~~~~~p~-~~--~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~i~~~l- 128 (259)
.+|+|+|++||||||+++.|+++++. ..+.+|+ ++ +..+++.+.+.. . .....+|+++++...+.+.+++
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~I~paL~ 85 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKKDLL 85 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999999999999986 3456774 33 355677665432 1 2344577788877667788887
Q ss_pred CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEE-ecCHHHHHHHHhhccCCchHHHHHH
Q psy16563 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYL-TVSEAIRLQRLSRRKNFTLEENELK 207 (259)
Q Consensus 129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L-~a~~ev~~~Rl~~R~~~~~~~~~~e 207 (259)
+|..||+|||++|+.+|+.++. ++ .....++..+....+.||++||| ++||+++.+|+..|+ ++.|
T Consensus 86 ~g~~VI~DRy~~S~~ayq~~~~----l~---~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~--dr~E---- 152 (216)
T 3tmk_A 86 EGKNIVMDRYVYSGVAYSAAKG----TN---GMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD--ERYE---- 152 (216)
T ss_dssp TTCEEEEESCHHHHHHHHHTTC----CT---TCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC--CTTC----
T ss_pred cCCEEEEeccHhHHHHHHHhcC----CC---HHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc--cccc----
Confidence 6999999999999999986432 21 12356677777777899999999 999999999986543 2222
Q ss_pred HHHHHHHHHHHHHHhcC------C-CCeEEEe-CCCCCHhhHHHHHHHHHhcc
Q psy16563 208 KNAKFRELLTTIYRNMN------N-PELVFVD-NSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 208 ~~~~~~~~~~~~y~~~~------~-~~~~vID-~s~~~~eev~~~I~~~l~~~ 252 (259)
..+|++++++.|.++. . ..+++|| ++.+ ++++.++|.+.|...
T Consensus 153 -~~~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s-~eeV~~~I~~~i~~~ 203 (216)
T 3tmk_A 153 -TVKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKG-IQEVEALIWQIVEPV 203 (216)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCC-HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhccccCCCCEEEEeCCCCC-HHHHHHHHHHHHHHH
Confidence 2579999999999883 2 3599999 6666 999999999988765
No 8
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.93 E-value=2.1e-25 Score=184.55 Aligned_cols=180 Identities=23% Similarity=0.278 Sum_probs=122.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhc----cc---ccCCCCc--hHHHHHHhccccch---HHHHHHHHHHHHHH-HHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKA----SL---KSTPPSS--IMSLREKFDAHDSL---LRRAYYSLGNYIAA-QDI 124 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~----~~---~~~p~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~i 124 (259)
.++|+|+|++||||||+++.|+++++. .+ ..+|+++ ++.+++.+.+...+ ....+|+++++... +.+
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~~~~I 100 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHFVKII 100 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 445999999999999999999999877 22 3467754 35577766543222 23346777776544 458
Q ss_pred HHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHH
Q psy16563 125 KQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEE 203 (259)
Q Consensus 125 ~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~ 203 (259)
.+++ +|.+||+|||++|+++|+.+ +.+.+ .+....+..|... +.||++|||++|++++++|+ +|+.. +
T Consensus 101 ~paL~~g~~VI~DRy~~S~~Ayq~~---~~g~~---~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~Ri-~rdr~---E 169 (223)
T 3ld9_A 101 KPSLMQKKIVICDRFIDSTIAYQGY---GQGID---CSLIDQLNDLVID-VYPDITFIIDVDINESLSRS-CKNGY---E 169 (223)
T ss_dssp HHHHHTTCEEEEESCHHHHHHHHTT---TTCCC---HHHHHHHHHHHCS-SCCSEEEEEECC------------------
T ss_pred HHHHhcCCeEEEccchhhHHHhccc---cCCcc---HHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHh-ccCcc---c
Confidence 8877 68999999999999999753 22221 2234556666666 88999999999999999999 54432 1
Q ss_pred HHHHHHHHHHHHHHHHHHhcC--CC-CeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 204 NELKKNAKFRELLTTIYRNMN--NP-ELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 204 ~~~e~~~~~~~~~~~~y~~~~--~~-~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
. ...+|++++++.|.++. .+ ++++||++++ ++++ ++|.+.|..+.
T Consensus 170 ~---~~~e~~~rv~~~y~~la~~~~~~~~vIDa~~s-ieeV-~~I~~~l~~~l 217 (223)
T 3ld9_A 170 F---ADMEFYYRVRDGFYDIAKKNPHRCHVITDKSE-TYDI-DDINFVHLEVI 217 (223)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCTTTEEEEESSCS-SSCC-CHHHHHHHHHH
T ss_pred c---chHHHHHHHHHHHHHHHHHCCCCEEEEcCCCC-HHHH-HHHHHHHHHHH
Confidence 1 14678899999999883 33 6999999987 9999 99999887654
No 9
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.89 E-value=7.9e-23 Score=170.29 Aligned_cols=184 Identities=19% Similarity=0.291 Sum_probs=125.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhc--ccc--cCCCCc--hHHHHHHhccccch---HHHHHHHHHHHH-HHHHHHHHh
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKA--SLK--STPPSS--IMSLREKFDAHDSL---LRRAYYSLGNYI-AAQDIKQDL 128 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~--~~~--~~p~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~i~~~l 128 (259)
++|+|+|++||||||+++.|+++++. .++ .+|..+ +..+++.+.+...+ ....++.+.++. ..+.+.+.+
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~~~l 106 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPAL 106 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999999999974 222 344443 34566665543211 222334444432 233456666
Q ss_pred -CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHHH
Q psy16563 129 -QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENEL 206 (259)
Q Consensus 129 -~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~~ 206 (259)
+|..||+|||++++.+|+.+ +.+++ .+...++..+....+.||++|||++|++++.+|+.+|+.. ++.+.
T Consensus 107 ~~g~~Vi~DRy~~s~~ayqg~---~r~~~---~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~-- 178 (229)
T 4eaq_A 107 KEGKVVLCDRYIDSSLAYQGY---ARGIG---VEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQ-- 178 (229)
T ss_dssp HTTCEEEEECCHHHHCCCCCC---CSCSC---HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCCH--
T ss_pred HCCCEEEECCchhHHHHHHHh---hcCCC---HHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchhh--
Confidence 68899999999999999742 12221 1123345555556678999999999999999999998632 22221
Q ss_pred HHHHHHHHHHHHHHHhcCC--C-CeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 207 KKNAKFRELLTTIYRNMNN--P-ELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 207 e~~~~~~~~~~~~y~~~~~--~-~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
...++++++.+.|.++.. + .+++||++++ ++++.++|.+.|...
T Consensus 179 -~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s-~eev~~~I~~~l~~~ 225 (229)
T 4eaq_A 179 -EDLKFHEKVIEGYQEIIHNESQRFKSVNADQP-LENVVEDTYQTIIKY 225 (229)
T ss_dssp -HHHHHHHHHHHHHHHHTTTCTTTEEEEETTSC-HHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-HHHHHHHHHHHHHHH
Confidence 145688999999998853 2 4899999987 999999999998764
No 10
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.87 E-value=3.2e-21 Score=155.92 Aligned_cols=180 Identities=23% Similarity=0.337 Sum_probs=116.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh---hcccc--cCCCCc--hHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHh-
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKL---KASLK--STPPSS--IMSLREKFDAHD--SLLRRAYYSLGNYIAAQDIKQDL- 128 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~---~~~~~--~~p~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~l- 128 (259)
++|+|+|++||||||+++.|++++ |..++ .+|+.+ +..+++.+.... ......++..+++.....+.+.+
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~l~ 80 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLS 80 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 369999999999999999999999 65544 345443 355666655221 11222334444443333366665
Q ss_pred CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK 208 (259)
Q Consensus 129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~ 208 (259)
++..|++|||+.++.+|+.. +.+++ .+....+..+....+.||++|||++|++++.+|+.+|+..+..
T Consensus 81 ~g~~vi~dr~~~s~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~------ 148 (197)
T 2z0h_A 81 EGYAVLLDRYTDSSVAYQGF---GRNLG---KEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKR------ 148 (197)
T ss_dssp --CEEEEESCHHHHHHHTTT---TTCSC---HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CCCCCH------
T ss_pred CCCEEEECCChhHHHHHHHh---ccCCC---HHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccCcccHH------
Confidence 58899999999998888642 11110 1223344444445667999999999999999999999643321
Q ss_pred HHHHHHHHHHHHHhcC---CCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 209 NAKFRELLTTIYRNMN---NPELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 209 ~~~~~~~~~~~y~~~~---~~~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
++++++...|.++. ...+++||++++ ++++.++|.+.+..+.
T Consensus 149 --~~~~~~~~~~~~~~~~~~~~~~~Id~~~~-~e~~~~~i~~~l~~~l 193 (197)
T 2z0h_A 149 --EFLERVREGYLVLAREHPERIVVLDGKRS-IEEIHRDVVREVKRRW 193 (197)
T ss_dssp --HHHHHHHHHHHHHHHHCTTTEEEEETTSC-HHHHHHHHHHHTTCC-
T ss_pred --HHHHHHHHHHHHHHHhCCCCEEEEeCCCC-HHHHHHHHHHHHHHHh
Confidence 35566666666652 234789999887 9999999999987753
No 11
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.82 E-value=6.4e-19 Score=141.89 Aligned_cols=178 Identities=24% Similarity=0.355 Sum_probs=114.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh---hccccc--CCCCc--hHHHHHHhccccchHH---HHHHHHHH-HHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKL---KASLKS--TPPSS--IMSLREKFDAHDSLLR---RAYYSLGN-YIAAQDIKQD 127 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~---~~~~~~--~p~~~--~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~i~~~ 127 (259)
++|+|+|++||||||+++.|++++ |..++. +|... +..+++.+.+. .+.. ..++...+ ..+.+.+.+.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~i~~~ 79 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLTE-ELDERTELLLFEASRSKLIEEKIIPD 79 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999998 555543 34332 24566666442 2211 12222222 2334455665
Q ss_pred h-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHH
Q psy16563 128 L-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL 206 (259)
Q Consensus 128 l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~ 206 (259)
+ ++..|++|||++++.++... +... . .+....+..+......||++|||+||++++.+|+.+|+..+.
T Consensus 80 l~~~~~vi~dr~~~~~~~~~g~---~~~~--~-~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~~~----- 148 (195)
T 2pbr_A 80 LKRDKVVILDRFVLSTIAYQGY---GKGL--D-VEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRFEN----- 148 (195)
T ss_dssp HHTTCEEEEESCHHHHHHHHTT---TTCC--C-HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCCCC-----
T ss_pred HhCCCEEEECcchhHHHHHccc---cCCC--C-HHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCccch-----
Confidence 5 68899999999887766421 1111 0 112222222333234699999999999999999987764331
Q ss_pred HHHHHHHHHHHHHHHhcC--CCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 207 KKNAKFRELLTTIYRNMN--NPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 207 e~~~~~~~~~~~~y~~~~--~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
.++.+++...|.++. ...+++||++++ ++++.++|.+.+...
T Consensus 149 ---~~~~~~~~~~~~~~~~~~~~~~~Id~~~~-~~~~~~~i~~~l~~~ 192 (195)
T 2pbr_A 149 ---KEFLEKVRKGFLELAKEEENVVVIDASGE-EEEVFKEILRALSGV 192 (195)
T ss_dssp ---HHHHHHHHHHHHHHHHHSTTEEEEETTSC-HHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHHHhhCCCEEEEECCCC-HHHHHHHHHHHHHHH
Confidence 124455555565553 135799999876 999999999998765
No 12
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.82 E-value=4.6e-19 Score=143.82 Aligned_cols=186 Identities=22% Similarity=0.267 Sum_probs=107.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHH---HHHHhCCCcEEE
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQD---IKQDLQKQPVVM 135 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~l~~~~vi~ 135 (259)
++|+|+|++||||||+++.|+++++..++.+|.... .+.+.|..++.- .-+..+....... +.+.+....+|+
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~r~~~~~~~~~~~~vi~ 76 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEEN-PYFEQYYKDLKK---TVFKMQIYMLTARSKQLKQAKNLENIIF 76 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGC-TTHHHHTTCHHH---HHHHHHHHHHHHHHHHHC------CEEE
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEccccccc-HHHHHHHhCccc---cchhHHHHHHHHHHHHHHHhhccCCEEE
Confidence 369999999999999999999999987776654211 112233222110 1111111222222 333333335999
Q ss_pred cCCccchhhhhhhhhhccccCCCCCcchhhhhc-cccc-------CCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHH
Q psy16563 136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS-WPKD-------LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELK 207 (259)
Q Consensus 136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~-------~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e 207 (259)
||++.++.+|+.....++.+.......+..++. +... ...||++|||++|++++.+|+.+|+.. .+...
T Consensus 77 d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r~--~~~~~- 153 (205)
T 2jaq_A 77 DRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRS--EELLI- 153 (205)
T ss_dssp ESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTCH--HHHHS-
T ss_pred EeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCCh--hhhcC-
Confidence 999999888765321111110000011112222 2222 257999999999999999999988642 11100
Q ss_pred HHHHHHHHHHHHHHhc----C-CCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 208 KNAKFRELLTTIYRNM----N-NPELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 208 ~~~~~~~~~~~~y~~~----~-~~~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
...+.+++...|.++ . ..++++||++++ ++++.++|.+.+..+.
T Consensus 154 -~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~~-~~~v~~~I~~~l~~~~ 202 (205)
T 2jaq_A 154 -GEEYWETLNKNYEEFYKQNVYDFPFFVVDAELD-VKTQIELIMNKLNSIK 202 (205)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTTTSCEEEEETTSC-HHHHHHHHHHHHHHC-
T ss_pred -cHHHHHHHHHHHHHHHHHccccCcEEEEECCCC-HHHHHHHHHHHHHHhc
Confidence 113445555555542 2 335899999985 9999999999997654
No 13
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.81 E-value=1.5e-18 Score=141.71 Aligned_cols=182 Identities=20% Similarity=0.261 Sum_probs=115.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcc--cc--cCCCCchHHHHHHhcccc---ch---HHHHHHHHHHH-HHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKAS--LK--STPPSSIMSLREKFDAHD---SL---LRRAYYSLGNY-IAAQDIKQD 127 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~--~~--~~p~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~-~~~~~i~~~ 127 (259)
++|+|+|++||||||+++.|+++++.. ++ .+|. ...+++.+.+.. .+ ....++...++ ...+.+.+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~ 82 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNS--SDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYILPM 82 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTC--CCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCc--HHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999864 22 2332 234455443321 11 11223333332 223344555
Q ss_pred h-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHh-hccCCchH---
Q psy16563 128 L-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLS-RRKNFTLE--- 202 (259)
Q Consensus 128 l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~-~R~~~~~~--- 202 (259)
+ .+..||+|+|+.+..+|+. +++.+ ...+..+......||++|||++|++++.+|+. +|+..++.
T Consensus 83 l~~g~~vi~D~~~~~~~~~~~----~~~~~------~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g 152 (213)
T 2plr_A 83 LKSGFIVISDRYIYTAYARDS----VRGVD------IDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAG 152 (213)
T ss_dssp HHTTCEEEEESCHHHHHHHHH----TTTCC------HHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTTT
T ss_pred HhCCCEEEEeCcHhHHHHHHH----hhCCC------HHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccccccccccc
Confidence 5 6889999999998877762 22221 12222222223459999999999999999999 88631220
Q ss_pred ------HHHHHHHHHHHHHHHHHHHhcCC-CCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 203 ------ENELKKNAKFRELLTTIYRNMNN-PELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 203 ------~~~~e~~~~~~~~~~~~y~~~~~-~~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
.+..+....+.+++...|.++.. ..+++||++.+ ++++.++|.+.+..+.
T Consensus 153 ~~~~~~~d~~e~~~~~~~r~~~~~~~~~~~~~~~~Id~~~~-~e~v~~~I~~~l~~~~ 209 (213)
T 2plr_A 153 ADIFPGLSPEEGFLKYQGLITEVYDKLVKDENFIVIDGTKT-PKEIQIQIRKFVGELI 209 (213)
T ss_dssp TTTCTTSCHHHHHHHHHHHHHHHHHHHTTTTTCEEEETTSC-HHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhHHHHHHHHHHHHHHHHhhCCEEEEECCCC-HHHHHHHHHHHHHHHh
Confidence 00011124567777778877642 25899999876 9999999999987653
No 14
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.80 E-value=1.4e-18 Score=137.18 Aligned_cols=165 Identities=21% Similarity=0.250 Sum_probs=106.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEEcCC
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRF 138 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~Dr~ 138 (259)
++|+|+|++||||||+++.|++.++..++..+. +..... .. ..+ .........+..|++||+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~-----~~~~~~---~~--~~~--------~~~~~~l~~~~~vi~dr~ 63 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSS-----FELAKS---GN--EKL--------FEHFNKLADEDNVIIDRF 63 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCC-----HHHHTT---CH--HHH--------HHHHHHHTTCCSEEEESC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcc-----cccchh---HH--HHH--------HHHHHHHHhCCCeEEeee
Confidence 469999999999999999999999987765431 111000 00 011 112223336889999999
Q ss_pred ccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHH
Q psy16563 139 WHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT 218 (259)
Q Consensus 139 ~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~ 218 (259)
..++.+|+.. +.......+.....+ ......||++|||++|++++.+|+.+|++.... .++.+++.+
T Consensus 64 ~~~~~v~~~~---~~~~~~~~~~~~~~l---~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~~-------~~~~~~~~~ 130 (173)
T 3kb2_A 64 VYSNLVYAKK---FKDYSILTERQLRFI---EDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIE-------GKDIDSILE 130 (173)
T ss_dssp HHHHHHHTTT---BTTCCCCCHHHHHHH---HHHHTTTEEEEEEECCHHHHHHHHHHHSCSCCC-------HHHHHHHHH
T ss_pred ecchHHHHHH---HHHhhHhhHHHHHHH---hccCCCCCEEEEEeCCHHHHHHHHHhcCCcchh-------hhHHHHHHH
Confidence 9888777531 111101001111111 112356899999999999999999998642211 124455556
Q ss_pred HHHhcC---CCCeEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563 219 IYRNMN---NPELVFVDNSEKSVHESSNDIVELIHNLPM 254 (259)
Q Consensus 219 ~y~~~~---~~~~~vID~s~~~~eev~~~I~~~l~~~~~ 254 (259)
.|.+.. ...+++||+++.+++++.++|.+.++..++
T Consensus 131 ~~~~~~~~~~~~~~~id~~~~~~~ev~~~I~~~~~~~~~ 169 (173)
T 3kb2_A 131 LYREVMSNAGLHTYSWDTGQWSSDEIAKDIIFLVELEHH 169 (173)
T ss_dssp HHHHHHHTCSSCEEEEETTTSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHhCCCc
Confidence 666542 335899999975599999999999998765
No 15
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.80 E-value=1.5e-18 Score=141.07 Aligned_cols=174 Identities=22% Similarity=0.302 Sum_probs=114.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh-hcccc--cCCC-Cc--hHHHHHHhccccchH---HHHHHHHHHHHHHHHHHHHh-
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKL-KASLK--STPP-SS--IMSLREKFDAHDSLL---RRAYYSLGNYIAAQDIKQDL- 128 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~-~~~~~--~~p~-~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~l- 128 (259)
++|+|+|++||||||+++.|++++ |..++ .+|. .+ +..+++.|.....+. ...++...++...+.+.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~~~l~ 84 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQEQLE 84 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 459999999999999999999998 44443 4444 22 355677775543221 12233333332224556655
Q ss_pred CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK 208 (259)
Q Consensus 129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~ 208 (259)
++..||+|||+.++.+|+.. ++++ .+.+..+......||++|||++|++++.+ +|+.. +.+
T Consensus 85 ~~~~vi~Dr~~~s~~~~~~~----~g~~------~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~d-~~e----- 145 (204)
T 2v54_A 85 QGITLIVDRYAFSGVAYAAA----KGAS------MTLSKSYESGLPKPDLVIFLESGSKEINR---NVGEE-IYE----- 145 (204)
T ss_dssp TTCEEEEESCHHHHHHHHHH----TTCC------HHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSSS-TTC-----
T ss_pred CCCEEEEECchhhHHHHHHc----cCCC------HHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCcc-ccc-----
Confidence 68899999999998888742 2221 12222222233579999999999999988 45421 111
Q ss_pred HHHHHHHHHHHHHhcCC---CCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 209 NAKFRELLTTIYRNMNN---PELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 209 ~~~~~~~~~~~y~~~~~---~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
..++.+++...|.++.. ..+++||++.+ ++++.++|.+.+...
T Consensus 146 ~~~~~~rl~~~y~~~~~~~~~~~~~Id~~~~-~~~v~~~i~~~l~~~ 191 (204)
T 2v54_A 146 DVTFQQKVLQEYKKMIEEGDIHWQIISSEFE-EDVKKELIKNIVIEA 191 (204)
T ss_dssp CSHHHHHHHHHHHHHHTTCSSCEEEECTTSC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHHHHHHHHH
Confidence 12466777777876632 35799999876 999999999998764
No 16
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.80 E-value=4.1e-18 Score=139.45 Aligned_cols=178 Identities=26% Similarity=0.273 Sum_probs=112.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccc-----cCCC--Cc-hHHHHHHhccccchH---HHHHHHHHHHHHHHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLK-----STPP--SS-IMSLREKFDAHDSLL---RRAYYSLGNYIAAQDIKQ 126 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~-----~~p~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~ 126 (259)
.++|+|+|++||||||+++.|+++++..++ .+|. .. +..+++.|.....+. ...+|...++...+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~ 88 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLIKE 88 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 346999999999999999999999886543 2343 12 345677776532221 122333333322234556
Q ss_pred Hh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHH
Q psy16563 127 DL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE 205 (259)
Q Consensus 127 ~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~ 205 (259)
.+ .+..||+|||+.++.+|.... .++ . ...+..+......||++|||++|++++.+|+..|.+ +.+
T Consensus 89 ~l~~~~~vi~dr~~~s~~~~~~~~---~~~----~--~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~~--~~~-- 155 (215)
T 1nn5_A 89 KLSQGVTLVVDRYAFSGVAFTGAK---ENF----S--LDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHE--RYE-- 155 (215)
T ss_dssp HHHTTCEEEEESCHHHHHHHHHTS---TTC----C--HHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----C--TTC--
T ss_pred HHHCCCEEEEeCCcccHHHHHhhc---CCC----C--HHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCcc--ccc--
Confidence 55 688999999999887775321 011 1 122222222335689999999999999999964422 111
Q ss_pred HHHHHHHHHHHHHHHHhcCC---CCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 206 LKKNAKFRELLTTIYRNMNN---PELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 206 ~e~~~~~~~~~~~~y~~~~~---~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
..++.+++...|.++.. .++++||++.+ ++++.++|.+.+..+
T Consensus 156 ---~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~-~e~~~~~i~~~l~~~ 201 (215)
T 1nn5_A 156 ---NGAFQERALRCFHQLMKDTTLNWKMVDASKS-IEAVHEDIRVLSEDA 201 (215)
T ss_dssp ---SHHHHHHHHHHHHHHTTCTTSCEEEEETTSC-HHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHhCCCCEEEEECCCC-HHHHHHHHHHHHHHH
Confidence 12355667777776642 35799998776 999999999988764
No 17
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.78 E-value=1.7e-18 Score=141.53 Aligned_cols=178 Identities=25% Similarity=0.318 Sum_probs=116.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccc-----cCCC--Cc-hHHHHHHhccccchH---HHHHHHHHHHHHHHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLK-----STPP--SS-IMSLREKFDAHDSLL---RRAYYSLGNYIAAQDIKQ 126 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~-----~~p~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~ 126 (259)
.++|+|+|++||||||+++.|+++++..++ .+|. .. +..+++.+.....+. ...+|..+++...+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 89 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNEIKS 89 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 346999999999999999999999987643 3343 12 244566665432221 123333333322234566
Q ss_pred Hh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHH
Q psy16563 127 DL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE 205 (259)
Q Consensus 127 ~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~ 205 (259)
.+ .+..||+|+|+.+..+|...+. ++ . ...+..+......||++|||++|++++.+|+.+|.+. .+
T Consensus 90 ~l~~~~~vi~D~~~~~~~~~~~~~~---~~----~--~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r--~~-- 156 (212)
T 2wwf_A 90 LLLKGIWVVCDRYAYSGVAYSSGAL---NL----N--KTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEI--YE-- 156 (212)
T ss_dssp HHHHTCEEEEECCHHHHHHHHHHHS---CC----C--HHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSST--TC--
T ss_pred HHhCCCEEEEecchhhHHHHHHhcc---CC----C--HHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCccc--cc--
Confidence 55 5788999999988776654320 11 1 1222222233356999999999999999999765321 11
Q ss_pred HHHHHHHHHHHHHHHHhcCC-CCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 206 LKKNAKFRELLTTIYRNMNN-PELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 206 ~e~~~~~~~~~~~~y~~~~~-~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
..++.+++...|.+... ..+++||++.+ ++++.++|.+.+..+
T Consensus 157 ---~~~~~~~~~~~~~~~~~~~~~~~Id~~~~-~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 157 ---KVETQKKIYETYKHFAHEDYWINIDATRK-IEDIHNDIVKEVTKI 200 (212)
T ss_dssp ---SHHHHHHHHHHGGGGTTCTTEEEEECSSC-HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHHHHHHhccCCEEEEECCCC-HHHHHHHHHHHHHHh
Confidence 12456777788877753 35899999976 999999999999776
No 18
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.78 E-value=2.8e-20 Score=154.85 Aligned_cols=183 Identities=15% Similarity=0.211 Sum_probs=95.3
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc-cccCCCCc-----hHHHHHHhccccchHHHHHHHHHHHHH----HH
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS-LKSTPPSS-----IMSLREKFDAHDSLLRRAYYSLGNYIA----AQ 122 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~-~~~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 122 (259)
..+|. +|+|+|++||||||+++.|+..-+.. +..+|... ...+++.++..+. ..-+..+...+ ..
T Consensus 17 ~~~g~--~i~i~G~~GsGKSTl~~~L~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~q~~~l~~~~~~ 91 (230)
T 2vp4_A 17 GTQPF--TVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPK---KWAMPFQSYVTLTMLQS 91 (230)
T ss_dssp TCCCE--EEEEECSTTSCHHHHHHTTGGGTTTEEEECCTHHHHTCBTTBCHHHHHHHSHH---HHHHHHHHHHHHHHHHH
T ss_pred CCCce--EEEEECCCCCCHHHHHHHHHhccCCeEEEecCHHHhhcccCCChHHHHHhChH---hhhhhhHHHHHHHHHHH
Confidence 34444 49999999999999999999872212 22333211 1233443322111 00111111111 11
Q ss_pred H----HHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccc-----cCCCCCEEEEEecCHHHHHHH
Q psy16563 123 D----IKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK-----DLMKPDLVIYLTVSEAIRLQR 192 (259)
Q Consensus 123 ~----i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-----~~~~pdlvI~L~a~~ev~~~R 192 (259)
. +.+.+ .+..|++|||.+++.+|+.. +++ ++....+..|.. ....||++|||++|++++++|
T Consensus 92 ~~~~~i~~~l~~~r~v~~dry~~s~~ayq~~-----~l~---~~~~~~~~~~~~~~~~~~~~~pD~vi~Ld~~~e~~~~R 163 (230)
T 2vp4_A 92 HTAPTNKKLKIMERSIFSARYCFVENMRRNG-----SLE---QGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYER 163 (230)
T ss_dssp HHCCCCSSEEEEESCHHHHHHTHHHHHHHHT-----SSC---HHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHH
T ss_pred HHhccccCceeecCCccccHHHHHHHHHHcC-----CCC---hHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCHHHHHHH
Confidence 1 11222 35677788888888888642 221 111222222221 356799999999999999999
Q ss_pred HhhccCCchHHHHHHHHHHHHHHHHHHHHhcC------CC-CeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 193 LSRRKNFTLEENELKKNAKFRELLTTIYRNMN------NP-ELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 193 l~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~------~~-~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
+.+|+... +. ....++++++...|.++. .+ ++++||++++ ++++.++|.+.+..+.
T Consensus 164 i~~R~r~~--e~--~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~-~eev~~~I~~~l~~~~ 226 (230)
T 2vp4_A 164 IRQRARSE--ES--CVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLN-LENIGTEYQRSESSIF 226 (230)
T ss_dssp HHHHCCGG--GT--TCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC------------------
T ss_pred HHHcCCcc--cc--cCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCC-HHHHHHHHHHHHHHHh
Confidence 99886421 11 113467888888888772 23 3799999987 9999999999887653
No 19
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.78 E-value=2.6e-20 Score=157.95 Aligned_cols=188 Identities=17% Similarity=0.144 Sum_probs=111.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh-hcccccCCCC--------------------chHHHHHHhccccc-h--HHHHH
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKL-KASLKSTPPS--------------------SIMSLREKFDAHDS-L--LRRAY 112 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~-~~~~~~~p~~--------------------~~~~~~~~~~~~~~-~--~~~~~ 112 (259)
+.++|+|+|++||||||+++.|++++ +..++.+|.. .+..+++.|+.++. + ....+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ep~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~ 102 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTY 102 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEECCCHHHHTSCCCC------------CCCCHHHHHHHCHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEEecchhhhhccccccccccccccccccCCchHHHHHhCchhcchHHHHH
Confidence 34569999999999999999999998 4444544321 12246666655432 1 11111
Q ss_pred --HHHHHHHHHH---H----HHHHh-CCCcEEEcCCccchhhhhhhhhhccccC-C-CCCcchhhhhcccccCCCCCEEE
Q psy16563 113 --YSLGNYIAAQ---D----IKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSD-L-KLPDEDDDIYSWPKDLMKPDLVI 180 (259)
Q Consensus 113 --~~~~~~~~~~---~----i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~-~-~l~~~~~~l~~~~~~~~~pdlvI 180 (259)
+...++.... . +.+.+ .|..||+|||++++.+|+.... +.+ . ...+....+..+......||++|
T Consensus 103 ~l~~~~r~~~~~~~~~l~~~i~~~l~~g~~Vi~Dry~~s~~~y~~~~~---~~~e~~~~~~~~~~l~~~~~~~~~pd~vi 179 (263)
T 1p5z_B 103 ACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECM---NETEWTIYQDWHDWMNNQFGQSLELDGII 179 (263)
T ss_dssp HHHHHHHHHHHHHTSGGGGSSSCEEEEESCHHHHHHTHHHHHHHTTSS---CHHHHHHHHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHHHHHHHHHHHHhhhhhccCCCceEEecceeecHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHhhhccCCCCeEE
Confidence 1111111111 1 12223 4788999999999888864210 000 0 00011112222221124699999
Q ss_pred EEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhc-------------CCCCeEEEeCCCCCHhhHHHHHHH
Q psy16563 181 YLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM-------------NNPELVFVDNSEKSVHESSNDIVE 247 (259)
Q Consensus 181 ~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~-------------~~~~~~vID~s~~~~eev~~~I~~ 247 (259)
||++|++++++|+.+|++.... . ...++++++...|+.+ ...++++||++++ ++++.++|.+
T Consensus 180 ~L~~~~e~~~~Ri~~R~r~~~~-~---~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~~~~-~eev~~~I~~ 254 (263)
T 1p5z_B 180 YLQATPETCLHRIYLRGRNEEQ-G---IPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNED-FKDKYESLVE 254 (263)
T ss_dssp EEECCHHHHHHHHHHHCCGGGT-T---CCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSC-HHHHHHHHHH
T ss_pred EEECCHHHHHHHHHhcCCcccc-C---ccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEECCCC-HHHHHHHHHH
Confidence 9999999999999988642110 0 0234555555555543 1234899999985 9999999999
Q ss_pred HHhcc
Q psy16563 248 LIHNL 252 (259)
Q Consensus 248 ~l~~~ 252 (259)
.|...
T Consensus 255 ~l~~~ 259 (263)
T 1p5z_B 255 KVKEF 259 (263)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 20
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.77 E-value=1.7e-19 Score=150.99 Aligned_cols=188 Identities=14% Similarity=0.117 Sum_probs=109.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhh-cccccCCCCc-----------------hHHHHHHhccccc---hHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLK-ASLKSTPPSS-----------------IMSLREKFDAHDS---LLRRAYYSLGN 117 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~-~~~~~~p~~~-----------------~~~~~~~~~~~~~---~~~~~~~~~~~ 117 (259)
++|+|+|++||||||+++.|+++++ ...+.+|... +..+++.++.++. +....++...+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~~~~~~~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~r 82 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLDMMYREPARWSYTFQTFSFLSR 82 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTTSEEECCCGGGTSCCC------------CCCHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCeeeecchhhhccccccccccccccccCCchHHHHHhCcccchhHHHHHHHHHH
Confidence 4599999999999999999999994 4455666532 1346666664432 11112221211
Q ss_pred HHH-H----HHHH----HHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHH
Q psy16563 118 YIA-A----QDIK----QDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEA 187 (259)
Q Consensus 118 ~~~-~----~~i~----~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~e 187 (259)
+.. . +.+. +.+ .+..|++|||.+++.+|+....-+.... ...+....+..+......||++|||++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~r~vi~Dr~~~s~~~y~~~~~~~~e~~-~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~ 161 (241)
T 2ocp_A 83 LKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWH-IYQDWHSFLLWEFASRITLHGFIYLQASPQ 161 (241)
T ss_dssp HHHHHSCCCHHHHSCSSCEEEEESCHHHHHHTHHHHHHHTTSSCHHHHH-HHHHHHHHHHHHSHHHHCCCEEEEEECCHH
T ss_pred HHHHHHHHhhhhcccCCceEeeeCCchhhHHHHHHHHHHcCCCCHHHHH-HHHHHHHHHHHhcccccCCCEEEEEECCHH
Confidence 111 0 0111 111 3556777777777776653210000000 000001111112212246999999999999
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcC-------------CCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 188 IRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN-------------NPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 188 v~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~-------------~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
++.+|+.+|+..... . ...++++++.+.|..+. ..++++||++++ ++++.+.+.++++.+
T Consensus 162 ~~~~R~~~R~r~~e~-~---~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~~-~~~v~~~i~~i~~~i 234 (241)
T 2ocp_A 162 VCLKRLYQRAREEEK-G---IELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDD-FSEEVTKQEDLMREV 234 (241)
T ss_dssp HHHHHHHHSCCTTTT-T---CCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSC-TTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccc-c---CCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCCC-hhhCHHHHHHHHHHH
Confidence 999999998753211 0 02457788888888752 235899999995 888777777776654
No 21
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.77 E-value=3.9e-17 Score=134.40 Aligned_cols=169 Identities=17% Similarity=0.214 Sum_probs=102.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHHHH--------HHHHHHHHHH
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYSLG--------NYIAAQDIKQ 126 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~--------~~~~~~~i~~ 126 (259)
+.++|+|.|||||||+|+|+.|++.++..+++. ++.+|+.+..+..+... .+.... ...+.+.+..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIst----GdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~ 103 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS----GDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIK 103 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEEECH----HHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceEcH----HHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Confidence 456799999999999999999999999988753 55666665554433211 111100 1122233333
Q ss_pred Hh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHH
Q psy16563 127 DL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEEN 204 (259)
Q Consensus 127 ~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~ 204 (259)
.. ....+|+|.|+.+.. +...+......++++|+|+||.+++.+|+..|... .+.++
T Consensus 104 ~~~~~~g~ilDGfPRt~~---------------------Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD 162 (217)
T 3umf_A 104 LVDKNCHFLIDGYPRELD---------------------QGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDD 162 (217)
T ss_dssp HTTTCSEEEEETBCSSHH---------------------HHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHH
T ss_pred ccccccCcccccCCCcHH---------------------HHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCC
Confidence 22 356789998765421 11111122356899999999999999999999632 22222
Q ss_pred HHHH----HHHHHHH---HHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 205 ELKK----NAKFREL---LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 205 ~~e~----~~~~~~~---~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
..+. ...|.+. +.+.|.+ ...++.||++++ +++|+++|.+.|++++
T Consensus 163 ~~e~i~~Rl~~Y~~~t~pl~~~Y~~--~~~l~~Idg~~~-~eeV~~~I~~~l~k~G 215 (217)
T 3umf_A 163 NEETIVKRFRTFNELTKPVIEHYKQ--QNKVITIDASGT-VDAIFDKVNHELQKFG 215 (217)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHT--TTCEEEEETTSC-HHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh--cCCEEEEECCCC-HHHHHHHHHHHHHHcC
Confidence 2111 1111111 2222322 124789999987 9999999999998764
No 22
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=99.74 E-value=7.5e-18 Score=146.74 Aligned_cols=156 Identities=14% Similarity=0.142 Sum_probs=99.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhccc----ccCCCC---c--h-HHHHHHhcc-----ccchHH----------HHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASL----KSTPPS---S--I-MSLREKFDA-----HDSLLR----------RAYY 113 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~----~~~p~~---~--~-~~~~~~~~~-----~~~~~~----------~~~~ 113 (259)
++|+|+|++||||||+++.|+++++... +.+|++ + . +.+++.+.+ +..+.. ..+|
T Consensus 8 ~fI~~EG~dGaGKTT~~~~La~~L~~~~~v~~trEPg~~w~~~~g~e~ir~~~~d~~~~~~~~~~~~~~e~~~~~lQLlf 87 (334)
T 1p6x_A 8 VRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQGNLAVDDAALITAHYQSRF 87 (334)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSGGGCSSCEEEECCCHHHHHTSSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccCCcEEEEeCCCCccccccchHHHHHHHHhhhhccccccCHHHHHHHHHHHHHHH
Confidence 3499999999999999999999997542 567763 1 2 445555431 111110 1122
Q ss_pred HH----HHHHHHHHHH-----HHh-CCCcEEEcCCccchhh-hhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEE
Q psy16563 114 SL----GNYIAAQDIK-----QDL-QKQPVVMDRFWHSTSA-YGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYL 182 (259)
Q Consensus 114 ~~----~~~~~~~~i~-----~~l-~~~~vi~Dr~~~s~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L 182 (259)
+. ..+++.+.+. +.+ .|..||+|||++++.+ |+.++..+++++ .+....+..+......||++|||
T Consensus 88 ~a~la~ra~~~~~~i~~~~~~pal~~g~~VI~DR~~~Ss~a~f~~~~yq~g~l~---~~~i~~l~~~~~~~~~PDLtIyL 164 (334)
T 1p6x_A 88 TTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVASTVCFPAARYLLGDMS---MCALMAMVATLPREPQGGNIVVT 164 (334)
T ss_dssp HHHHHHHHHHHHTTSCEEEECCCSCCSEEEEEESCTHHHHTHHHHHHHHTTSSC---HHHHHHHHTTCCCCCTTEEEEEE
T ss_pred HhHHHHHHHHHHHHHhhhccCccccCCCEEEEeCChHHHHHHHHHHHHhcCCCC---HHHHHHHHHHccCCCCCCEEEEE
Confidence 21 1122222221 444 3678999999999987 443322233331 22344555565555789999999
Q ss_pred ecCHHHHHHHHhhccCC-chHHHHHHHHHHHHHHHHHHHHhc
Q psy16563 183 TVSEAIRLQRLSRRKNF-TLEENELKKNAKFRELLTTIYRNM 223 (259)
Q Consensus 183 ~a~~ev~~~Rl~~R~~~-~~~~~~~e~~~~~~~~~~~~y~~~ 223 (259)
++|++++++|+.+|++. ++. ..+|++++++.|.++
T Consensus 165 d~~pe~~l~RI~~RgR~~Eri------~~eyl~~vr~~Y~~l 200 (334)
T 1p6x_A 165 TLNVEEHIRRLRTRARIGEQI------DITLIATLRNVYFML 200 (334)
T ss_dssp ECCHHHHHHHHHHHSCTTCCC------CHHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHhcCCCcccC------CHHHHHHHHHHHHHH
Confidence 99999999999988742 221 346889999999887
No 23
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.73 E-value=1.7e-16 Score=129.81 Aligned_cols=166 Identities=23% Similarity=0.320 Sum_probs=102.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHHHH----HHHHHHHHHHHh-CCC
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYSLG----NYIAAQDIKQDL-QKQ 131 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~i~~~l-~~~ 131 (259)
|+|+|.|||||||+|+|+.|++.++..+++. ++-+|+.+..+..+... .+.... .......+...+ +..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~ist----GdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~ 76 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHIST----GDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHG 76 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEH----HHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcH----HHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCC
Confidence 5799999999999999999999999988853 55666665544433211 111110 123334455544 456
Q ss_pred cEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhccCC-----------
Q psy16563 132 PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRKNF----------- 199 (259)
Q Consensus 132 ~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~----------- 199 (259)
.+|+|.|+.+.... ..+..++ .....+|.+|+|+||.+++.+|+..|.-.
T Consensus 77 ~~ilDGfPRt~~Qa------------------~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~ 138 (206)
T 3sr0_A 77 NVIFDGFPRTVKQA------------------EALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKY 138 (206)
T ss_dssp CEEEESCCCSHHHH------------------HHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTT
T ss_pred ceEecCCchhHHHH------------------HHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeec
Confidence 78999887653211 1111111 22356899999999999999999988410
Q ss_pred ----------chHHHHHHHHHHHHHHHHHHHHhc--------CC-CCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 200 ----------TLEENELKKNAKFRELLTTIYRNM--------NN-PELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 200 ----------~~~~~~~e~~~~~~~~~~~~y~~~--------~~-~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
.+.++. .+..++..+.|.+. .. ..+..||++++ +++|+++|.++|..
T Consensus 139 ~pp~~g~~l~~r~DD~----~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~-~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 139 NPPPPGVKVIQREDDK----PEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKP-VEEVYRQVLEVIGD 204 (206)
T ss_dssp BCCCTTCCCBCCGGGS----HHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSC-HHHHHHHHHHHHC-
T ss_pred cCCCCCceecccCCCC----HHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCC-HHHHHHHHHHHHcc
Confidence 012221 11222222223322 12 23788999997 99999999999864
No 24
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=99.72 E-value=1.1e-17 Score=145.59 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=95.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhc---ccccCCCCc-----h-HHHHHHhcccc-----chHH--HHH--HHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKA---SLKSTPPSS-----I-MSLREKFDAHD-----SLLR--RAY--YSLGNYIA 120 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~---~~~~~p~~~-----~-~~~~~~~~~~~-----~~~~--~~~--~~~~~~~~ 120 (259)
++|+|+|++||||||+++.|++++.. ..+.+|++. + +.+++.+.+.. .+.. ... +.++.+.+
T Consensus 5 ~fI~~EG~dGsGKTT~~~~La~~L~~~gv~~trEPg~~w~~~~g~~~Lr~~yld~~r~~~~~~~~~ea~lf~~~~qL~fa 84 (331)
T 1e2k_A 5 LRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQITMG 84 (331)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC----CCEEEECCCHHHHHTTSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhCCEEEEeCCCCcccccccHHHHHHHHhChhhhccccCCHHHHHHHHHHHHHHHH
Confidence 34999999999999999999999863 345677531 2 45665554321 1111 111 11111121
Q ss_pred ------HHHHH----HH------h-CCCcEEEcCCccchh-hhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEE
Q psy16563 121 ------AQDIK----QD------L-QKQPVVMDRFWHSTS-AYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYL 182 (259)
Q Consensus 121 ------~~~i~----~~------l-~~~~vi~Dr~~~s~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L 182 (259)
++++. +. + .|..||+|||++++. +|+.++..+++++ .+....+..+......||+++++
T Consensus 85 ~r~l~~a~r~~~~i~p~l~~~~~l~~g~~VI~DR~~~Ss~~~yq~~~~~~g~l~---~~~~~~l~~~~~~~~ppdlt~ll 161 (331)
T 1e2k_A 85 MPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMT---PQAVLAFVALIPPTLPGTNIVLG 161 (331)
T ss_dssp HHHHHHHHHHGGGEEEECC----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSC---HHHHHHHHHTCCCCCTTCEEEEE
T ss_pred hhhHHHHHHHHHHHhHHhhccccccCCCEEEEecCchHhHHHHHHHHHhcCCCC---HHHHHHHHHhcccCCCCeEEEEE
Confidence 33332 22 2 478899999999997 6885543334432 22344455555444567899999
Q ss_pred ecCHHHHHHHHhhccCC-chHHHHHHHHHHHHHHHHHHHHhc
Q psy16563 183 TVSEAIRLQRLSRRKNF-TLEENELKKNAKFRELLTTIYRNM 223 (259)
Q Consensus 183 ~a~~ev~~~Rl~~R~~~-~~~~~~~e~~~~~~~~~~~~y~~~ 223 (259)
++|++++++|+.+|++. ++. ..+|++++++.|.++
T Consensus 162 dl~pe~~l~RI~~Rgr~~Eri------~~~yl~rvr~~Y~~l 197 (331)
T 1e2k_A 162 ALPEDRHIDRLAKRQRPGERL------DLAMLAAIRRVYGLL 197 (331)
T ss_dssp ECCHHHHHHHHHHSCCTTCCC------CHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCCCcccC------CHHHHHHHHHHHHHH
Confidence 99999999999988742 221 356888888888765
No 25
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=99.72 E-value=1.7e-17 Score=146.14 Aligned_cols=157 Identities=13% Similarity=0.147 Sum_probs=95.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhc---ccccCCCCc-----h-HHHHHHhccc-----cchHH--HHHH--HHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKA---SLKSTPPSS-----I-MSLREKFDAH-----DSLLR--RAYY--SLGNYI 119 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~---~~~~~p~~~-----~-~~~~~~~~~~-----~~~~~--~~~~--~~~~~~ 119 (259)
.++|+|+|++||||||+++.|++++.. ..+.+|+.. + +.+++.+.+. ..+.. ...| ..+.++
T Consensus 49 ~~fIt~EG~dGsGKTT~~~~Lae~L~~~gvv~trEPg~~w~~~~gn~~Lr~~yld~~r~~~~~~~~~ea~l~~a~~QL~f 128 (376)
T 1of1_A 49 LLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQITM 128 (376)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHC----CCEEEECCCHHHHHTTSSSCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhCCEEEEeCCCCccccccchHHHHHHHhChhhhccccCCHHHHHHHHHHHHHHH
Confidence 345999999999999999999999863 345677521 2 4555555332 11111 1111 111122
Q ss_pred H------HHHH----HHH------h-CCCcEEEcCCccchh-hhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEE
Q psy16563 120 A------AQDI----KQD------L-QKQPVVMDRFWHSTS-AYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIY 181 (259)
Q Consensus 120 ~------~~~i----~~~------l-~~~~vi~Dr~~~s~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~ 181 (259)
+ .+++ .+. + .|..||+|||++++. +|+.+...+++++ .+....+..+......||++++
T Consensus 129 a~r~~~~a~r~~~~i~paL~~~~al~~g~iVI~DR~~~Ss~~ayq~~~y~~g~l~---~~~i~~l~~~~~~~~ppdlt~L 205 (376)
T 1of1_A 129 GMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMT---PQAVLAFVALIPPTLPGTNIVL 205 (376)
T ss_dssp HHHHHHHHHHHGGGEEEEC-----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSC---HHHHHHHHHTCCCCCTTCEEEE
T ss_pred hccchHHHHHHHHHhhhhhcccccccCCCeEEEeeChhHHHHHHHHHHHhcCCCC---HHHHHHHHHhcccCCCCeEEEE
Confidence 2 3332 222 2 478899999999997 6885543334432 2234445555544455788999
Q ss_pred EecCHHHHHHHHhhccCC-chHHHHHHHHHHHHHHHHHHHHhc
Q psy16563 182 LTVSEAIRLQRLSRRKNF-TLEENELKKNAKFRELLTTIYRNM 223 (259)
Q Consensus 182 L~a~~ev~~~Rl~~R~~~-~~~~~~~e~~~~~~~~~~~~y~~~ 223 (259)
+++|++++++|+.+|++. ++. ..+|++++++.|.++
T Consensus 206 ldl~pe~~l~RI~~RgR~~Eri------~leyl~rVr~~Y~~l 242 (376)
T 1of1_A 206 GALPEDRHIDRLAKRQRPGERL------DLAMLAAIRRVYGLL 242 (376)
T ss_dssp EECCHHHHHHHHHHSCCTTCCC------CHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHhcCCCcccC------CHHHHHHHHHHHHHH
Confidence 999999999999988742 221 356888888888765
No 26
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.71 E-value=3.6e-16 Score=125.66 Aligned_cols=172 Identities=16% Similarity=0.182 Sum_probs=95.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccC---------CCC-c-hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKST---------PPS-S-IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQD 127 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~---------p~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 127 (259)
++|+|+|++||||||+++.|++.++..++.. |+. . ...+++.+..............-.......+...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~ 83 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAAN 83 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhccc
Confidence 4599999999999999999999998765531 111 1 2223333322111101111010001112222222
Q ss_pred hCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chH----
Q psy16563 128 LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLE---- 202 (259)
Q Consensus 128 l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~---- 202 (259)
..+..+|+|+++.+...+.. +..++.....||++|||++|++++.+|+.+|+.. .+.
T Consensus 84 ~~~~~vi~dg~~~~~~~~~~------------------~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~ 145 (196)
T 1tev_A 84 AQKNKFLIDGFPRNQDNLQG------------------WNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNR 145 (196)
T ss_dssp TTCCEEEEESCCCSHHHHHH------------------HHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCH
T ss_pred cCCCeEEEeCCCCCHHHHHH------------------HHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCH
Confidence 24788999988776433221 1111122245789999999999999999888521 111
Q ss_pred HHHHHHHHHHHHHHH---HHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 203 ENELKKNAKFRELLT---TIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 203 ~~~~e~~~~~~~~~~---~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
+........+.+... +.|.+. ..+++||++.+ +++++++|.+.+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~id~~~~-~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 146 ESLEKRIQTYLQSTKPIIDLYEEM--GKVKKIDASKS-VDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--TCEEEEETTSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhc--CCEEEEECCCC-HHHHHHHHHHHHHh
Confidence 110011112222222 234332 23679999965 99999999999875
No 27
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.71 E-value=2.2e-16 Score=126.72 Aligned_cols=171 Identities=15% Similarity=0.195 Sum_probs=95.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccC---------CCC-chHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKST---------PPS-SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQD 127 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~---------p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 127 (259)
.++|+|+|++||||||+++.|++.++..++.. ++. .+..+++.|........... ...+...+.+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~----~~~l~~~i~~~ 81 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVT----VKLLKNAIDAN 81 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHH----HHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHhc
Confidence 35699999999999999999999998766532 111 12334444433211000000 11112222221
Q ss_pred hCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHHH
Q psy16563 128 LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENEL 206 (259)
Q Consensus 128 l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~~ 206 (259)
.+..+|+|+++.+...+. .+..+......||++|||++|++++.+|+.+|+.. .+.+...
T Consensus 82 -~~~~vi~d~~~~~~~~~~------------------~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~ 142 (194)
T 1qf9_A 82 -QGKNFLVDGFPRNEENNN------------------SWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNI 142 (194)
T ss_dssp -TTCCEEEETCCCSHHHHH------------------HHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSH
T ss_pred -CCCCEEEeCcCCCHHHHH------------------HHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCH
Confidence 577899998766432211 11111111235889999999999999999988632 1111110
Q ss_pred HH----HHHHHHHHHHHHHhcC-CCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 207 KK----NAKFRELLTTIYRNMN-NPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 207 e~----~~~~~~~~~~~y~~~~-~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
+. ...+.+.....+..+. ...+++||++.+ ++++.++|.+.+...
T Consensus 143 ~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~i~~~l~~~ 192 (194)
T 1qf9_A 143 ESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRD-VNEVYNDVENLFKSM 192 (194)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSC-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCC-HHHHHHHHHHHHHHc
Confidence 00 1111111112122221 123689999966 999999999998763
No 28
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.71 E-value=1.4e-16 Score=128.43 Aligned_cols=166 Identities=15% Similarity=0.210 Sum_probs=95.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccC---------CCCc-hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKST---------PPSS-IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQD 127 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~---------p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 127 (259)
.++|+|+|++||||||+++.|+++++..++.. ++.. +..+++.+........... ...+.+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~----~~~~~~~i~~~ 84 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETV----LDMLRDAMVAK 84 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHH----HHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHH----HHHHHHHHHhc
Confidence 34699999999999999999999998776532 1111 2233333332111111111 11233444454
Q ss_pred h-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHH
Q psy16563 128 L-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENE 205 (259)
Q Consensus 128 l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~ 205 (259)
+ .+..||+|+|+... .....|......||++|||++|++++.+|+..|+.. .+.+..
T Consensus 85 ~~~~~~vi~d~~~~~~---------------------~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~ 143 (196)
T 2c95_A 85 VNTSKGFLIDGYPREV---------------------QQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDN 143 (196)
T ss_dssp TTTCSCEEEESCCCSH---------------------HHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGS
T ss_pred cccCCcEEEeCCCCCH---------------------HHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCC
Confidence 4 57889999765431 011111111245899999999999999999988621 111111
Q ss_pred HHHHHHHHHHHHHHHHh-------cCCC-CeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 206 LKKNAKFRELLTTIYRN-------MNNP-ELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 206 ~e~~~~~~~~~~~~y~~-------~~~~-~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
...+.+++...+.. .... .+++||++.+ +++++++|.+.+..+
T Consensus 144 ---~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~-~e~v~~~i~~~l~~~ 194 (196)
T 2c95_A 144 ---EETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGS-VDSVFSQVCTHLDAL 194 (196)
T ss_dssp ---HHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSC-HHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCC-HHHHHHHHHHHHHHh
Confidence 01112222222211 1111 2578999866 999999999998754
No 29
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.70 E-value=4.7e-16 Score=125.57 Aligned_cols=166 Identities=15% Similarity=0.193 Sum_probs=96.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCC---------CCc-hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTP---------PSS-IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQD 127 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 127 (259)
.++|+|+|++||||||+++.|+++++..++... +.. +..+.+.+........... ...+.+.+.+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~----~~~~~~~i~~~ 87 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIV----LELLKEAMVAS 87 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHH----HHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHH----HHHHHHHHhcc
Confidence 346999999999999999999999997765320 011 1223333332111111111 11223334444
Q ss_pred h-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHH
Q psy16563 128 L-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENE 205 (259)
Q Consensus 128 l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~ 205 (259)
+ .+..||+|+++.+.... ..+ ......||++|||++|++++.+|+.+|+.. .+.+..
T Consensus 88 ~~~~~~vi~dg~~~~~~~~------------------~~l---~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~ 146 (199)
T 2bwj_A 88 LGDTRGFLIDGYPREVKQG------------------EEF---GRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDT 146 (199)
T ss_dssp TTSCSCEEEETCCSSHHHH------------------HHH---HHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHH
T ss_pred cccCccEEEeCCCCCHHHH------------------HHH---HHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCC
Confidence 4 57889999876643110 111 111235899999999999999999999742 222221
Q ss_pred HHHHHHHHHHHHHHHHh-------cCCCC-eEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 206 LKKNAKFRELLTTIYRN-------MNNPE-LVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 206 ~e~~~~~~~~~~~~y~~-------~~~~~-~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
. ..+.+++...+.. ..... +++||++.+ +++++++|.+.+...
T Consensus 147 ~---~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~e~v~~~i~~~l~~~ 197 (199)
T 2bwj_A 147 T---KTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGT-PEDVFLQLCTAIDSI 197 (199)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSC-HHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCC-HHHHHHHHHHHHHHh
Confidence 1 1222222222211 11123 588998766 999999999988754
No 30
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.70 E-value=1.3e-18 Score=142.50 Aligned_cols=184 Identities=18% Similarity=0.229 Sum_probs=111.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhccc-----ccCCCC--c--hHHHHHHhccc------cchHHHHHHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASL-----KSTPPS--S--IMSLREKFDAH------DSLLRRAYYSLGNYIAAQD 123 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~-----~~~p~~--~--~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 123 (259)
++|+|+|++||||||+++.|++.++... +.+|+. + .+.++...... .......++...++...+.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHT 80 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhHHH
Confidence 3699999999999999999999997532 334431 1 23455444221 1122223344444322344
Q ss_pred HHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc---ccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563 124 IKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP---KDLMKPDLVIYLTVSEAIRLQRLSRRKNF 199 (259)
Q Consensus 124 i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~ 199 (259)
+.+.+ .+..||+|||+.+..+|+.+....... ......+..+. ...+.||++|||++|++++.+|+..|+..
T Consensus 81 i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~ 156 (214)
T 1gtv_A 81 IQGLCRGYDVVILDRYVASNAAYSAARLHENAA----GKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQR 156 (214)
T ss_dssp HHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEE----EHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred HHHHhhCCCEEEECCCcccchhhhhcccCcccc----HHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHccccc
Confidence 55655 478999999999988887543110000 00011122111 12346999999999999999999998642
Q ss_pred c--hHHHHHHHHHHHHHHHHHHHHhcCC----CCeEEEeCCCCCHhhHHHHHHH
Q psy16563 200 T--LEENELKKNAKFRELLTTIYRNMNN----PELVFVDNSEKSVHESSNDIVE 247 (259)
Q Consensus 200 ~--~~~~~~e~~~~~~~~~~~~y~~~~~----~~~~vID~s~~~~eev~~~I~~ 247 (259)
. +..+..+...++++++...|.++.. .++++||++++ ++++.++|.+
T Consensus 157 ~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~vId~~~~-~~~v~~~i~~ 209 (214)
T 1gtv_A 157 DPGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVD-PGRLAATLAP 209 (214)
T ss_dssp BBEEEEEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEB-HHHHHHHHC-
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCC-HHHHHHHhcC
Confidence 0 0001111124577788888877642 24789999987 9999888754
No 31
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.68 E-value=8.1e-16 Score=124.84 Aligned_cols=164 Identities=17% Similarity=0.163 Sum_probs=91.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccC--------CCC-c-hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKST--------PPS-S-IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQD 127 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~--------p~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 127 (259)
.++|+|+|++||||||+++.|+++++..++.. ++. . +..+++.+........... ...+.+.+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~----~~~~~~~~~~~ 95 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLT----NELVDDRLNNP 95 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHH----HHHHHHHTTSG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHH----HHHHHHHHhcc
Confidence 45799999999999999999999998776532 011 1 1222222221110000000 01112222222
Q ss_pred hCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccc-cCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHH
Q psy16563 128 LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK-DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL 206 (259)
Q Consensus 128 l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~ 206 (259)
..+..+|+|.++..... ...+..++. ....||++|||++|++++.+|+.+|++.+....
T Consensus 96 ~~~~~vIldg~~~~~~~------------------~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~~e-- 155 (201)
T 2cdn_A 96 DAANGFILDGYPRSVEQ------------------AKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDD-- 155 (201)
T ss_dssp GGTTCEEEESCCCSHHH------------------HHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHH--
T ss_pred cCCCeEEEECCCCCHHH------------------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCCHH--
Confidence 24567889876443110 011111111 124589999999999999999999864321111
Q ss_pred HHHHHHHHHHHHHHHh------cCCCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563 207 KKNAKFRELLTTIYRN------MNNPELVFVDNSEKSVHESSNDIVELIH 250 (259)
Q Consensus 207 e~~~~~~~~~~~~y~~------~~~~~~~vID~s~~~~eev~~~I~~~l~ 250 (259)
.+.+++...+.. .....+++||++.+ ++++.++|.+.+.
T Consensus 156 ----~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~~-~eev~~~I~~~l~ 200 (201)
T 2cdn_A 156 ----VILNRMKVYRDETAPLLEYYRDQLKTVDAVGT-MDEVFARALRALG 200 (201)
T ss_dssp ----HHHHHHHHHHHHTTTHHHHTTTTEEEEECCSC-HHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHhhHHHHHHhcCcEEEEeCCCC-HHHHHHHHHHHHc
Confidence 122222222211 11335789999876 9999999988764
No 32
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=3.3e-15 Score=121.22 Aligned_cols=171 Identities=13% Similarity=0.162 Sum_probs=89.3
Q ss_pred CCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHH-HHHhccccchHHHHHHHHHH-----HH
Q psy16563 46 NDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSL-REKFDAHDSLLRRAYYSLGN-----YI 119 (259)
Q Consensus 46 ~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~ 119 (259)
+++.|....++. +|+|.|++||||||+++.|++.++..++.. +.+ .+..... + ..++.... ..
T Consensus 15 ~~~~~~~~~~~~--~i~l~G~~GsGKsTl~~~La~~l~~~~i~~-----d~~~~~~~g~~--i--~~~~~~~~~~~~~~~ 83 (199)
T 3vaa_A 15 TENLYFQSNAMV--RIFLTGYMGAGKTTLGKAFARKLNVPFIDL-----DWYIEERFHKT--V--GELFTERGEAGFREL 83 (199)
T ss_dssp ---------CCC--EEEEECCTTSCHHHHHHHHHHHHTCCEEEH-----HHHHHHHHTSC--H--HHHHHHHHHHHHHHH
T ss_pred CCceeEecCCCC--EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc-----hHHHHHHhCCc--H--HHHHHhcChHHHHHH
Confidence 344444555544 499999999999999999999998877642 121 1111111 1 01111111 11
Q ss_pred HHHHHHHHhCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHh-hccC
Q psy16563 120 AAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLS-RRKN 198 (259)
Q Consensus 120 ~~~~i~~~l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~-~R~~ 198 (259)
..+.+.....+..+|++- |++. ...++....+ ..++.+|||++|++++.+|+. .|+.
T Consensus 84 e~~~l~~l~~~~~~vi~~--------------ggg~-~~~~~~~~~l-------~~~~~vi~L~~~~e~l~~Rl~~~~~~ 141 (199)
T 3vaa_A 84 ERNMLHEVAEFENVVIST--------------GGGA-PCFYDNMEFM-------NRTGKTVFLNVHPDVLFRRLRIAKQQ 141 (199)
T ss_dssp HHHHHHHHTTCSSEEEEC--------------CTTG-GGSTTHHHHH-------HHHSEEEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhhcCCcEEEC--------------CCcE-EccHHHHHHH-------HcCCEEEEEECCHHHHHHHHhcCCCC
Confidence 222334444444444441 2121 0001111122 126789999999999999998 4432
Q ss_pred Cch-----HHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 199 FTL-----EENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 199 ~~~-----~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
... .+...+.....++.....|.. ..++||+++.++++++++|.+.+..+.
T Consensus 142 Rp~~~~~~~~~~~~~i~~~~~~r~~~y~~----ad~~Idt~~~s~ee~~~~I~~~l~~~l 197 (199)
T 3vaa_A 142 RPILQGKEDDELMDFIIQALEKRAPFYTQ----AQYIFNADELEDRWQIESSVQRLQELL 197 (199)
T ss_dssp CGGGTTCCHHHHHHHHHHHHHHHHHHHTT----SSEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred CCCcCCCChhhHHHHHHHHHHHHHHHHhh----CCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 110 000011112222333333432 468999999669999999999997653
No 33
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.67 E-value=2.9e-15 Score=121.64 Aligned_cols=171 Identities=15% Similarity=0.204 Sum_probs=94.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccC---------CC-Cc-hHHHHHHhccccchHHHHHHHHHHHHHHHH
Q psy16563 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKST---------PP-SS-IMSLREKFDAHDSLLRRAYYSLGNYIAAQD 123 (259)
Q Consensus 55 ~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~---------p~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (259)
...+++|+|+|++||||||+++.|++.++..++.. +. .. ...+++.+.++....... ....+.+.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~----~~~~l~~~ 87 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEI----TLALLRNA 87 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHH----HHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHH----HHHHHHHH
Confidence 33456799999999999999999999998765532 11 11 122333332211000100 11122334
Q ss_pred HHHHh-CC-CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC--
Q psy16563 124 IKQDL-QK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-- 199 (259)
Q Consensus 124 i~~~l-~~-~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-- 199 (259)
+.+.+ .| ..+++|.++.... ....+..+ ...||++|||++|++++.+|+.+|+..
T Consensus 88 i~~~l~~g~~~~i~dg~~~~~~------------------~~~~~~~~---~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~ 146 (203)
T 1ukz_A 88 ISDNVKANKHKFLIDGFPRKMD------------------QAISFERD---IVESKFILFFDCPEDIMLERLLERGKTSG 146 (203)
T ss_dssp HHHHHHTTCCEEEEETCCCSHH------------------HHHHHHHH---TCCCSEEEEEECCHHHHHHHHHHHHHHHC
T ss_pred HHhhhccCCCeEEEeCCCCCHH------------------HHHHHHHh---cCCCCEEEEEECCHHHHHHHHHhccccCC
Confidence 44444 44 5778886543210 00111111 234899999999999999999988521
Q ss_pred ---chHHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 200 ---TLEENELKKNAKFRELLTTIYRNMNNPE-LVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 200 ---~~~~~~~e~~~~~~~~~~~~y~~~~~~~-~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
+..+........+.+.....++.....+ +++||++.+ ++++.++|.+.+..
T Consensus 147 ~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~-~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 147 RSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRS-VEDVYKDVQDAIRD 201 (203)
T ss_dssp CTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSC-HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCC-HHHHHHHHHHHHhc
Confidence 1111100011122222222222222233 567999976 99999999998865
No 34
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.67 E-value=4.6e-15 Score=121.57 Aligned_cols=169 Identities=22% Similarity=0.264 Sum_probs=92.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHHHH----HHHHHHHHHHHh----
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYSLG----NYIAAQDIKQDL---- 128 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~i~~~l---- 128 (259)
+.|+|+|++||||||+++.|++.++..++.. ...+++.+..+...... .++... .......+...+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~----d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~ 76 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHIST----GDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDD 76 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEH----HHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeH----HHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccc
Confidence 3599999999999999999999998776632 11222222221111000 000000 011112222222
Q ss_pred CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhcc----------
Q psy16563 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRK---------- 197 (259)
Q Consensus 129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~---------- 197 (259)
.+..+|+|.|+...... ..+..+. .....||++|||++|++++.+|+.+|.
T Consensus 77 ~~~~~ildg~p~~~~~~------------------~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~ 138 (216)
T 3fb4_A 77 CQKGFLLDGFPRTVAQA------------------DALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYH 138 (216)
T ss_dssp GTTCEEEESCCCSHHHH------------------HHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEE
T ss_pred CCCcEEEeCCCCCHHHH------------------HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccc
Confidence 36788999765432111 1111111 112458999999999999999999981
Q ss_pred -----------------------CCchHH--HHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 198 -----------------------NFTLEE--NELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 198 -----------------------~~~~~~--~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
+.+.+. ..+.........+.+.|.. ...+++||++++ ++++.++|.+.|..+
T Consensus 139 ~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~--~~~~~~id~~~~-~~~v~~~i~~~l~~~ 215 (216)
T 3fb4_A 139 TIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQ--KGVLKDIDGQQD-IKKVFVDINDLLGGL 215 (216)
T ss_dssp TTTBCCSSTTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHH--TTCEEEEECSSC-HHHHHHHHHHHHHTC
T ss_pred cccCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHc--CCcEEEEECCCC-HHHHHHHHHHHHHhc
Confidence 111110 0111111111222223322 124789999987 999999999998764
No 35
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=99.66 E-value=3.3e-16 Score=136.53 Aligned_cols=156 Identities=17% Similarity=0.137 Sum_probs=100.0
Q ss_pred CeEEEEcCCCCcHHHHH-HHHHHHhhcc----cccCCCC---c--h-HHHHHHhccc-----cchH--------HH--HH
Q psy16563 59 PLIVFEGLDGCGKSHTS-QTVAKKLKAS----LKSTPPS---S--I-MSLREKFDAH-----DSLL--------RR--AY 112 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~-~~l~~~~~~~----~~~~p~~---~--~-~~~~~~~~~~-----~~~~--------~~--~~ 112 (259)
++|+|+|+.||||||++ +.|+++++.. ++.+|++ + . +.+++.+.+. ..+. .. .+
T Consensus 13 ~~I~iEG~~GaGKTT~~~~~L~~~l~~~g~vv~trEPgg~w~t~~g~e~lr~i~l~~~~~~~~~~s~~~a~~~~~e~ql~ 92 (341)
T 1osn_A 13 LRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQTRRLNGDVSPEDAQRLTAHFQSL 92 (341)
T ss_dssp EEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECCCHHHHTTBTTBCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCccccCcccHHHHHHHHhchhhhcccccchhhhhHHHHHHHHH
Confidence 45999999999999999 9999998754 5677765 2 2 4666666431 1111 00 12
Q ss_pred HHHHHHHHHHHHHH------------Hh-CCCcEEEcCCccchhhhhhhh-hhccccCCCCCcchhhhhcccccCCCCCE
Q psy16563 113 YSLGNYIAAQDIKQ------------DL-QKQPVVMDRFWHSTSAYGMAN-ELVKNSDLKLPDEDDDIYSWPKDLMKPDL 178 (259)
Q Consensus 113 ~~~~~~~~~~~i~~------------~l-~~~~vi~Dr~~~s~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~pdl 178 (259)
|+.....+++++.+ .+ .+..||+||+++++.+|.... ..-++++ .+....+..+......||+
T Consensus 93 fa~p~~~la~R~~~h~~~~i~~~~~pal~~g~~VI~DR~~~Ss~a~f~~~r~~~g~l~---~~~~~~L~~~~~~~~~PDl 169 (341)
T 1osn_A 93 FCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHPIASTICFPLSRYLVGDMS---PAALPGLLFTLPAEPPGTN 169 (341)
T ss_dssp THHHHHHHHHHHHHTSCCCCSCCSCCCSSCCEEEEEESCTHHHHTHHHHHHHHHTSSC---GGGHHHHHTTCCCCCSCCE
T ss_pred HHhHHHHHHHHHHHHHhhhhccccccccCCCCeEEEeCCccHHHHHHHhhhhhcCCCC---HHHHHHHHHhhhcCCCCCe
Confidence 22222334555443 22 356799999999998665321 1112332 2335667777776778999
Q ss_pred EEEEecCHHHHHHHHhhccCC-chHHHHHHHHHHHHHHHHHHHHhc
Q psy16563 179 VIYLTVSEAIRLQRLSRRKNF-TLEENELKKNAKFRELLTTIYRNM 223 (259)
Q Consensus 179 vI~L~a~~ev~~~Rl~~R~~~-~~~~~~~e~~~~~~~~~~~~y~~~ 223 (259)
+|||++|+++..+|+.+|++. ++. ..+|++++++.|.++
T Consensus 170 tI~Ld~~pe~~l~RI~~RgR~~Eri------e~~yl~rvr~~Y~~l 209 (341)
T 1osn_A 170 LVVCTVSLPSHLSRVSKRARPGETV------NLPFVMVLRNVYIML 209 (341)
T ss_dssp EEEEECCHHHHHHHCC------CCC------CHHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHhhCCCcccC------CHHHHHHHHHHHHHH
Confidence 999999999999999888642 221 246888888888876
No 36
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.65 E-value=3.5e-15 Score=122.36 Aligned_cols=169 Identities=20% Similarity=0.229 Sum_probs=93.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCC---------CCc-hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTP---------PSS-IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL 128 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 128 (259)
+.|+|+|++||||||+++.|++.++..++... +.. +..+.+.+........... ...+...+....
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~l~~~~ 76 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT----IGIVKERLGKDD 76 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHH----HHHHHHHHTSGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhccc
Confidence 35999999999999999999999987765320 001 1222222322111100000 011112222112
Q ss_pred CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhc-----------
Q psy16563 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRR----------- 196 (259)
Q Consensus 129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R----------- 196 (259)
.+..+|+|.|+...... ..+..++ .....||++|||++|++++.+|+.+|
T Consensus 77 ~~~~~ildg~p~~~~~~------------------~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~ 138 (216)
T 3dl0_A 77 CERGFLLDGFPRTVAQA------------------EALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYH 138 (216)
T ss_dssp GTTCEEEESCCCSHHHH------------------HHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEE
T ss_pred ccCCEEEeCCCCCHHHH------------------HHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccc
Confidence 36788999765542111 1111111 12345899999999999999999999
Q ss_pred ----------------------cCCchHH--HHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 197 ----------------------KNFTLEE--NELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 197 ----------------------~~~~~~~--~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
.+.+.+. .+++........+.+.|.+. ..+++||++++ ++++.++|.+.|+.+
T Consensus 139 ~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~--~~~~~id~~~~-~~~v~~~i~~~l~~~ 215 (216)
T 3dl0_A 139 LVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEK--GYLVNVNGQQD-IQDVYADLKVLLGGL 215 (216)
T ss_dssp TTTBCCSSTTBCTTTCCBEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHH--TCEEEEECSSC-HHHHHHHHHHHHGGG
T ss_pred cccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc--CCEEEEECCCC-HHHHHHHHHHHHHhc
Confidence 1111111 01111111122223333322 23789999988 999999999998764
No 37
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.65 E-value=2.3e-15 Score=124.41 Aligned_cols=164 Identities=16% Similarity=0.224 Sum_probs=97.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccC------C--CCc--hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKST------P--PSS--IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL 128 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~------p--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 128 (259)
++|+|+|++||||||+++.|+++++..++.. + +.+ +..+++.+........ ......+.+.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~--------~~~~~~i~~~l 72 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD--------DITIPMVLETL 72 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCH--------HHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcH--------HHHHHHHHHHH
Confidence 3599999999999999999999998766532 1 111 1233333332110000 12223333333
Q ss_pred -C--CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhccCC-c---
Q psy16563 129 -Q--KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRKNF-T--- 200 (259)
Q Consensus 129 -~--~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~--- 200 (259)
. +..||+|.|+.... ....+..++ .....||++|||++|++++.+|+.+|+.. +
T Consensus 73 ~~~~g~~vIlDg~~~~~~------------------~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g 134 (223)
T 2xb4_A 73 ESKGKDGWLLDGFPRNTV------------------QAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPN 134 (223)
T ss_dssp HHHCTTCEEEESCCCSHH------------------HHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTT
T ss_pred hcccCCeEEEeCCcCCHH------------------HHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccC
Confidence 3 78899997654311 011122221 12246899999999999999999988621 0
Q ss_pred --------------------------hHHHHHH-----HHHHHHHHH---HH---HHHhcC---CCCeEEEeCCCCCHhh
Q psy16563 201 --------------------------LEENELK-----KNAKFRELL---TT---IYRNMN---NPELVFVDNSEKSVHE 240 (259)
Q Consensus 201 --------------------------~~~~~~e-----~~~~~~~~~---~~---~y~~~~---~~~~~vID~s~~~~ee 240 (259)
+.++..+ ....|.++. .+ .|.++. ...+++||++.+ +++
T Consensus 135 ~~y~~~~~~p~~~~~~~~~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~-~~~ 213 (223)
T 2xb4_A 135 HPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGS-IDS 213 (223)
T ss_dssp SCCBTTCGGGCCBTTBCTTTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSC-HHH
T ss_pred CccccccCCCccccccccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCC-HHH
Confidence 0111111 111244442 55 777653 224799999887 999
Q ss_pred HHHHHHHHH
Q psy16563 241 SSNDIVELI 249 (259)
Q Consensus 241 v~~~I~~~l 249 (259)
++++|.+.|
T Consensus 214 v~~~i~~~l 222 (223)
T 2xb4_A 214 IKDTLLAQL 222 (223)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999876
No 38
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.64 E-value=5.9e-15 Score=121.64 Aligned_cols=169 Identities=17% Similarity=0.197 Sum_probs=90.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccC--------CCCc--hHHHHHHhccccchHHHHHHHHHHHHHHHHH-HH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKST--------PPSS--IMSLREKFDAHDSLLRRAYYSLGNYIAAQDI-KQ 126 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~--------p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~ 126 (259)
+++|+|+|++||||||+++.|+++++..++.. ++.+ +..+++.+..........+. ....+.+ .+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~----~~~~~~~~~~ 80 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVV----NMVKERLRQP 80 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHH----HHHHHHHHSH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHH----HHHHHHHhhc
Confidence 34599999999999999999999999776542 0110 12233333221111111110 1111221 22
Q ss_pred HhCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-------
Q psy16563 127 DLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF------- 199 (259)
Q Consensus 127 ~l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~------- 199 (259)
...+..+|+|.|..... ....+. .....||++|||++|++++.+|+..|+..
T Consensus 81 ~~~~~~~vidg~~~~~~------------------~~~~l~---~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~ 139 (222)
T 1zak_A 81 DAQENGWLLDGYPRSYS------------------QAMALE---TLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIY 139 (222)
T ss_dssp HHHHTCEEEESCCCSHH------------------HHHHHH---TTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEE
T ss_pred cccCCcEEEECCCCCHH------------------HHHHHH---HcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCcc
Confidence 22234455586543210 011111 12345899999999999999999877521
Q ss_pred -------------chHHHH-HHHHHHHHHHHHHHHH---h---cCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 200 -------------TLEENE-LKKNAKFRELLTTIYR---N---MNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 200 -------------~~~~~~-~e~~~~~~~~~~~~y~---~---~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
.+...+ .+......+++...|. . .+...+++||++.+ +++++++|.+.+...
T Consensus 140 ~~~~~pp~~~~~~~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id~~~~-~~ev~~~I~~~l~~~ 211 (222)
T 1zak_A 140 HLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDAT-VDAVFAKIDELLGSI 211 (222)
T ss_dssp ESSSSCCCSSGGGGGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSC-HHHHHHHHHHHHHHH
T ss_pred ccccCCCcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcEEEEECCCC-HHHHHHHHHHHHHhh
Confidence 000000 0000112222222222 2 12234789999766 999999999998754
No 39
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.64 E-value=6.2e-15 Score=116.06 Aligned_cols=159 Identities=16% Similarity=0.206 Sum_probs=89.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcccc----chHH--HHHHHH-HHHHHHHHHHHHh---
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHD----SLLR--RAYYSL-GNYIAAQDIKQDL--- 128 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~--~~~~~~-~~~~~~~~i~~~l--- 128 (259)
++|+|+|++||||||+++.| +.+|..++.. .+.+++...... .+.. ..++.. ........+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 76 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM----SDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTS 76 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH----HHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCSC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH----hHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Confidence 46999999999999999999 8888876642 123333322211 0100 001110 0112233334434
Q ss_pred CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK 208 (259)
Q Consensus 129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~ 208 (259)
.+..||+|.+ ... .....+..+. ..|+++|||++|++++.+|+..|++......
T Consensus 77 ~~~~vi~dg~-~~~------------------~~~~~l~~~~---~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~---- 130 (179)
T 3lw7_A 77 NHDLVVFDGV-RSL------------------AEVEEFKRLL---GDSVYIVAVHSPPKIRYKRMIERLRSDDSKE---- 130 (179)
T ss_dssp CCSCEEEECC-CCH------------------HHHHHHHHHH---CSCEEEEEEECCHHHHHHHHHTCC----CCC----
T ss_pred CCCeEEEeCC-CCH------------------HHHHHHHHHh---CCCcEEEEEECCHHHHHHHHHhccCCCCcch----
Confidence 4678899865 211 1111222222 2478999999999999999999975321110
Q ss_pred HHHHHHHH-------HHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 209 NAKFRELL-------TTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 209 ~~~~~~~~-------~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
...+.++. ...|... ..++||++++ ++++.++|.+++..+
T Consensus 131 ~~~~~~r~~~~~~~~~~~~~~~---ad~vId~~~~-~~~~~~~i~~~l~~~ 177 (179)
T 3lw7_A 131 ISELIRRDREELKLGIGEVIAM---ADYIITNDSN-YEEFKRRCEEVTDRV 177 (179)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHT---CSEEEECCSC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccChHhHHHh---CCEEEECCCC-HHHHHHHHHHHHHHH
Confidence 11111221 1122222 3488999885 999999999998764
No 40
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.64 E-value=7.2e-16 Score=123.90 Aligned_cols=166 Identities=15% Similarity=0.126 Sum_probs=89.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHh----ccccc-hHHHHHHHHHHHHHHHHHHHHh-CCC
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKF----DAHDS-LLRRAYYSLGNYIAAQDIKQDL-QKQ 131 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~i~~~l-~~~ 131 (259)
.++|+|+|++||||||+++.|++.++..++.. +.+++.+ ...+. +.. .............+...+ .|.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~-----D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~ 78 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSK-----DAFKEVMFDGLGWSDREWSR-RVGATAIMMLYHTAATILQSGQ 78 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH-----HHHHHHHHHHHCCCSHHHHH-HHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecH-----HHHHHHHHHhcCccchHHHH-HhhHHHHHHHHHHHHHHHhCCC
Confidence 34699999999999999999999998766542 3333322 11111 111 111111112233344444 688
Q ss_pred cEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHHHHHHH
Q psy16563 132 PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENELKKNA 210 (259)
Q Consensus 132 ~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~~e~~~ 210 (259)
.||+|++. +.. .. ...+..+......|+++|||++|++++.+|+.+|+.. ++..... ..
T Consensus 79 ~vi~d~~~-~~~-~~----------------~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~--~~ 138 (193)
T 2rhm_A 79 SLIMESNF-RVD-LD----------------TERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHC--DD 138 (193)
T ss_dssp CEEEEECC-CHH-HH----------------HHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC---------
T ss_pred eEEEecCC-CCH-HH----------------HHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccc--cC
Confidence 89999876 210 00 0011111122345889999999999999999988631 1110000 01
Q ss_pred HHHH--HHHHHHHh---cCC-CCeEEEeCCCC---CHhhHHHHHHHHH
Q psy16563 211 KFRE--LLTTIYRN---MNN-PELVFVDNSEK---SVHESSNDIVELI 249 (259)
Q Consensus 211 ~~~~--~~~~~y~~---~~~-~~~~vID~s~~---~~eev~~~I~~~l 249 (259)
.+.. .+...|.. +.. .++++||+++. .++++.+.|.+.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~Idt~~~~~~~~~~i~~~i~~~l 186 (193)
T 2rhm_A 139 RSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDMNAIVQWVRQHL 186 (193)
T ss_dssp -CHHHHHHHHHSCCCCCCCCCSCEEEEECSSGGGCCHHHHHHHHHHHH
T ss_pred ccCcchhhHHHHhcCCCccCCCCEEEEeCCCCcccCHHHHHHHHHHHH
Confidence 1222 22233333 222 45899999986 2344444444444
No 41
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.63 E-value=2.2e-15 Score=120.82 Aligned_cols=167 Identities=14% Similarity=0.132 Sum_probs=93.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhc-----ccccCCCCchHHHHHHh-----cccc----chHHHHHHHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKA-----SLKSTPPSSIMSLREKF-----DAHD----SLLRRAYYSLGNYIAAQDI 124 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~-----~~~~~p~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~i 124 (259)
++|+|+|++||||||+++.|+++++. .++ +. .+.+++.+ .... .+........ .......+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i 76 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII--NY--GDFMLATALKLGYAKDRDEMRKLSVEKQKKL-QIDAAKGI 76 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE--EH--HHHHHHHHHTTTSCSSHHHHTTSCHHHHHHH-HHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE--EC--ChHHHHHHHhcccccchhhhhcCCHHHHHHH-HHHHHHHH
Confidence 36999999999999999999999983 333 11 12222222 1110 0100100000 11123345
Q ss_pred HHHh---CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHH-Hhh--ccC
Q psy16563 125 KQDL---QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQR-LSR--RKN 198 (259)
Q Consensus 125 ~~~l---~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~R-l~~--R~~ 198 (259)
.+.+ .+..||+|+| +...++.. ...++ + ...+.. ..|+++|||++|++++++| +.. |+.
T Consensus 77 ~~~l~~~~~~~vi~d~~--~~~~~~~~--~~~~~----~--~~~~~~-----~~~~~vi~l~~~~~~~~~rr~~~~~R~~ 141 (194)
T 1nks_A 77 AEEARAGGEGYLFIDTH--AVIRTPSG--YLPGL----P--SYVITE-----INPSVIFLLEADPKIILSRQKRDTTRNR 141 (194)
T ss_dssp HHHHHHTCSSEEEEEEC--SEEEETTE--EEESS----C--HHHHHH-----HCCSEEEEEECCHHHHHHHHHHCTTTCC
T ss_pred HHHhhccCCCEEEECCc--hhhccccc--cccCC----C--HHHHHh-----cCCCEEEEEeCCHHHHHHHHHhhcccCC
Confidence 5554 5788999998 22223210 01111 1 111211 1389999999999999866 767 764
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhcC----CCCeEEE-eCCCCCHhhHHHHHHHHH
Q psy16563 199 FTLEENELKKNAKFRELLTTIYRNMN----NPELVFV-DNSEKSVHESSNDIVELI 249 (259)
Q Consensus 199 ~~~~~~~~e~~~~~~~~~~~~y~~~~----~~~~~vI-D~s~~~~eev~~~I~~~l 249 (259)
.+....+ ...+.+++...|.+.. ..++++| |++.+ +++++++|.+.+
T Consensus 142 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~I~d~~~~-~e~v~~~I~~~l 193 (194)
T 1nks_A 142 NDYSDES---VILETINFARYAATASAVLAGSTVKVIVNVEGD-PSIAANEIIRSM 193 (194)
T ss_dssp CCCCSHH---HHHHHHHHHHHHHHHHHHHHTCEEEEEECCSSC-HHHHHHHHHHHH
T ss_pred CCccCHH---HHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCC-HHHHHHHHHHHh
Confidence 1111110 2334455555555542 2357889 88776 999999998876
No 42
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.63 E-value=2e-14 Score=119.42 Aligned_cols=170 Identities=16% Similarity=0.170 Sum_probs=93.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH--HHHHHH----HHHHHHHHHHHHh---
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYSL----GNYIAAQDIKQDL--- 128 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~i~~~l--- 128 (259)
.+.|+|+|++||||||+++.|+++++..++.. .+.+++.......+.. +.++.. ........+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~----d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~ 91 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT----GDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETP 91 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH----HHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH----HHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc
Confidence 45699999999999999999999999776642 1122222111111100 001000 0112222333332
Q ss_pred -CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccc-cCCCCCEEEEEecCHHHHHHHHhhccC--------
Q psy16563 129 -QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK-DLMKPDLVIYLTVSEAIRLQRLSRRKN-------- 198 (259)
Q Consensus 129 -~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~pdlvI~L~a~~ev~~~Rl~~R~~-------- 198 (259)
.+..+|+|+|...... ...+..|+. ....||++|||++|++++.+|+..|..
T Consensus 92 ~~~~g~ildg~~~~~~~------------------~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y 153 (233)
T 1ak2_A 92 PCKNGFLLDGFPRTVRQ------------------AEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSY 153 (233)
T ss_dssp GGTTCEEEESCCCSHHH------------------HHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEE
T ss_pred cccCcEEEeCCCCCHHH------------------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCcc
Confidence 2456889987643210 111222221 124589999999999999999988841
Q ss_pred ------------------C--chHHHHHH----HHHHHHHHH---HHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 199 ------------------F--TLEENELK----KNAKFRELL---TTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 199 ------------------~--~~~~~~~e----~~~~~~~~~---~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
. .+.++..+ ....|.+.. .+.|.+ ...+++||++.+ +++++++|.+.|..
T Consensus 154 ~~~~~pp~~~~~~~~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~--~~~~~~id~~~~-~~~v~~~I~~~l~~ 230 (233)
T 1ak2_A 154 HEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSK--RGIHSAIDASQT-PDVVFASILAAFSK 230 (233)
T ss_dssp BTTTBCCSSTTBCTTTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH--TTCEEEEETTSC-HHHHHHHHHHHHHH
T ss_pred ccccCCCccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh--cCCEEEEECCCC-HHHHHHHHHHHHHh
Confidence 0 01111100 011122211 112221 123789999976 99999999999875
Q ss_pred c
Q psy16563 252 L 252 (259)
Q Consensus 252 ~ 252 (259)
+
T Consensus 231 ~ 231 (233)
T 1ak2_A 231 A 231 (233)
T ss_dssp H
T ss_pred h
Confidence 4
No 43
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.62 E-value=8.3e-15 Score=118.92 Aligned_cols=162 Identities=16% Similarity=0.124 Sum_probs=93.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEE
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVM 135 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~ 135 (259)
++++|+|+|++||||||+++.|++.++..++...................+.. .........+...+ .+..+|+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~l~~~~~~~~~viv 91 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTD-----DDRWPWLAAIGERLASREPVVV 91 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCH-----HHHHHHHHHHHHHHTSSSCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCc-----hhhHHHHHHHHHHHhcCCCEEE
Confidence 35579999999999999999999999877664321110100111110000100 00111122333333 5677788
Q ss_pred cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Q psy16563 136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL 215 (259)
Q Consensus 136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~ 215 (259)
|...... .....+... ...|+.+|||++|++++.+|+.+|++..... +..++
T Consensus 92 d~~~~~~------------------~~~~~l~~~---~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~-------~~~~~ 143 (202)
T 3t61_A 92 SCSALKR------------------SYRDKLRES---APGGLAFVFLHGSESVLAERMHHRTGHFMPS-------SLLQT 143 (202)
T ss_dssp ECCCCSH------------------HHHHHHHHT---STTCCEEEEEECCHHHHHHHHHHHHSSCCCH-------HHHHH
T ss_pred ECCCCCH------------------HHHHHHHHh---cCCCeEEEEEeCCHHHHHHHHHHhhccCCCH-------HHHHH
Confidence 7443211 011122111 1346789999999999999999997432111 12233
Q ss_pred HHHHHHhcCC-CCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 216 LTTIYRNMNN-PELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 216 ~~~~y~~~~~-~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
....+..... ..+++||++.+ +++++++|.+.|...
T Consensus 144 ~~~~~~~~~~~~~~~~Id~~~~-~~e~~~~I~~~l~~~ 180 (202)
T 3t61_A 144 QLETLEDPRGEVRTVAVDVAQP-LAEIVREALAGLARL 180 (202)
T ss_dssp HHHHCCCCTTSTTEEEEESSSC-HHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCCeEEEeCCCC-HHHHHHHHHHHHHHh
Confidence 3333333322 35899999965 999999999999765
No 44
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.62 E-value=4.6e-15 Score=122.01 Aligned_cols=113 Identities=16% Similarity=0.179 Sum_probs=67.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccC--------CCC--chHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKST--------PPS--SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL 128 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~--------p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 128 (259)
+.|+|+|++||||||+++.|+++++..++.. ++. .+..+++.+....... .....+.+.+.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~--------~~~~~~~i~~~l 77 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVG--------DEIVLGLVKEKF 77 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCC--------HHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCC--------HHHHHHHHHHHH
Confidence 4599999999999999999999999877642 110 1122333332211000 111222233322
Q ss_pred ----CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563 129 ----QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRK 197 (259)
Q Consensus 129 ----~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~ 197 (259)
.+..+|+|.|+..... ...+..++ .....||++|||++|++++.+|+..|+
T Consensus 78 ~~~~~~~~~i~dg~~~~~~~------------------~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 133 (217)
T 3be4_A 78 DLGVCVNGFVLDGFPRTIPQ------------------AEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRC 133 (217)
T ss_dssp HTTTTTTCEEEESCCCSHHH------------------HHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred hccccCCCEEEeCCCCCHHH------------------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 3678899976543110 11111111 122458999999999999999999885
No 45
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.61 E-value=7.1e-15 Score=117.50 Aligned_cols=164 Identities=18% Similarity=0.197 Sum_probs=88.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccC--------CCCc--hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKST--------PPSS--IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL 128 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~--------p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 128 (259)
++|+|+|++||||||+++.|+++++..++.. ++.+ +..+++.+....... .......+...+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~--------~~~~~~~~~~~l 76 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVP--------DDLILELIREEL 76 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC--------HHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCC--------HHHHHHHHHHHh
Confidence 3599999999999999999999998776532 0100 112222222211000 011222334434
Q ss_pred CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccc-cCCCCCEEEEEecCHHHHHHHHhhcc----CCchHH
Q psy16563 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK-DLMKPDLVIYLTVSEAIRLQRLSRRK----NFTLEE 203 (259)
Q Consensus 129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~pdlvI~L~a~~ev~~~Rl~~R~----~~~~~~ 203 (259)
.. .+|+|+++...... ..+..++. ....||++|||++|++++.+|+..|+ ..+...
T Consensus 77 ~~-~~i~dg~~~~~~~~------------------~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~ 137 (186)
T 3cm0_A 77 AE-RVIFDGFPRTLAQA------------------EALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNE 137 (186)
T ss_dssp CS-EEEEESCCCSHHHH------------------HHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCH
T ss_pred cC-CEEEeCCCCCHHHH------------------HHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCH
Confidence 32 38899776542110 01111111 11247899999999999999999884 211111
Q ss_pred HHHH-HHHHHHHHHHHHHHhcCC-CCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563 204 NELK-KNAKFRELLTTIYRNMNN-PELVFVDNSEKSVHESSNDIVELIH 250 (259)
Q Consensus 204 ~~~e-~~~~~~~~~~~~y~~~~~-~~~~vID~s~~~~eev~~~I~~~l~ 250 (259)
.... ....+.+.....+..... ..+++||++.+ ++++.++|.+.+.
T Consensus 138 ~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~-~~~v~~~i~~~l~ 185 (186)
T 3cm0_A 138 ETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGT-PDEVYARIRAALG 185 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSC-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCC-HHHHHHHHHHHhc
Confidence 1111 011222221111111111 23789999876 9999999998774
No 46
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.60 E-value=5.7e-15 Score=121.09 Aligned_cols=109 Identities=17% Similarity=0.255 Sum_probs=63.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccC--------CCC--chHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhC
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKST--------PPS--SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQ 129 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~--------p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 129 (259)
.|+|+|++||||||+++.|+++++..++.. ++. .+..+++.+....... .......+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~--------~~~~~~~i~~~l~ 73 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT--------DELVIALVKERIA 73 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCC--------HHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCC--------HHHHHHHHHHHHh
Confidence 599999999999999999999998766542 000 0111222221110000 1122233333332
Q ss_pred ----CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563 130 ----KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197 (259)
Q Consensus 130 ----~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~ 197 (259)
+..+|+|+|...... ...+ ......||++|||++|++++.+|+..|+
T Consensus 74 ~~~~~~~~i~dg~~~~~~~------------------~~~l---~~~~~~~d~vi~l~~~~e~~~~R~~~R~ 124 (214)
T 1e4v_A 74 QEDCRNGFLLDGFPRTIPQ------------------ADAM---KEAGINVDYVLEFDVPDELIVDRIVGRR 124 (214)
T ss_dssp SGGGGGCEEEESCCCSHHH------------------HHHH---HHTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred ccccCCCEEEeCCCCCHHH------------------HHHH---HhcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence 356888876432110 0111 1112358999999999999999998875
No 47
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.60 E-value=2.2e-14 Score=118.53 Aligned_cols=167 Identities=16% Similarity=0.139 Sum_probs=81.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHHH--------HHHHHHHHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYSL--------GNYIAAQDIKQD 127 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~--------~~~~~~~~i~~~ 127 (259)
.+.++|.|++||||||+++.|++.++..+++. ++.+++.+.....+... .++.. -...+.+.+...
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~----gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~ 83 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQIST----GDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEA 83 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECH----HHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSG
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeec----hHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCc
Confidence 45599999999999999999999999887743 22333332222111110 00000 001122222221
Q ss_pred hCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC--C------
Q psy16563 128 LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN--F------ 199 (259)
Q Consensus 128 l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~--~------ 199 (259)
-....+|+|.|+.+.. +...+......||++|+|+||++++.+|+.+|.- .
T Consensus 84 ~~~~g~ILDGfPRt~~---------------------Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh 142 (230)
T 3gmt_A 84 DCANGYLFDGFPRTIA---------------------QADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYH 142 (230)
T ss_dssp GGTTCEEEESCCCSHH---------------------HHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEE
T ss_pred ccCCCeEecCCCCcHH---------------------HHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCccc
Confidence 1235688898766421 1111111234689999999999999999999851 0
Q ss_pred --------------------chHHHHHH-------HHHHHHHHHHHHHHhcC---------CCCeEEEeCCCCCHhhHHH
Q psy16563 200 --------------------TLEENELK-------KNAKFRELLTTIYRNMN---------NPELVFVDNSEKSVHESSN 243 (259)
Q Consensus 200 --------------------~~~~~~~e-------~~~~~~~~~~~~y~~~~---------~~~~~vID~s~~~~eev~~ 243 (259)
.+.++..+ ...+...-+.+.|.+.. ...+..||++++ +++|.+
T Consensus 143 ~~~~pp~~~~~~d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~-~~eV~~ 221 (230)
T 3gmt_A 143 VKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGA-VEEIRA 221 (230)
T ss_dssp TTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC----------
T ss_pred ccCCCCCccCcCCCccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCC-HHHHHH
Confidence 02222111 12222233444555420 134789999998 999999
Q ss_pred HHHHHHh
Q psy16563 244 DIVELIH 250 (259)
Q Consensus 244 ~I~~~l~ 250 (259)
+|.++|.
T Consensus 222 ~i~~~l~ 228 (230)
T 3gmt_A 222 RVRRAQV 228 (230)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 9998774
No 48
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.60 E-value=2.4e-15 Score=119.86 Aligned_cols=166 Identities=17% Similarity=0.125 Sum_probs=89.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHh--CCCcEE
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAH-DSLLRRAYYSLGNYIAAQDIKQDL--QKQPVV 134 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l--~~~~vi 134 (259)
.++|+|+|++||||||+++.|++.++..++..+...+..+++.+... ..+... ........+.+...+ .+..||
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g~~i~~~~~~g~~~~~~~---~~~~~~~~~~i~~~l~~~g~~vi 81 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQEH---PMWIPLMLDALQYASREAAGPLI 81 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHHHHHHHHTSTTCCSCGGGS---TTHHHHHHHHHHHHHHHCSSCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhhHHHHHHhCccccchhhhh---HHHHHHHHHHHHHHHHhCCCcEE
Confidence 45699999999999999999999999877632211134455555411 111000 000012223333433 377788
Q ss_pred EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q psy16563 135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214 (259)
Q Consensus 135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~ 214 (259)
+|..+.....+ ..+..++.....+-..|||++|++++.+|+..|+... .. .+.++
T Consensus 82 ~d~~~~~~~~~------------------~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~-~~------~~~~~ 136 (183)
T 2vli_A 82 VPVSISDTARH------------------RRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQ-VN------VGTVE 136 (183)
T ss_dssp EEECCCCHHHH------------------HHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC-----CC------HHHHH
T ss_pred EeeeccCHHHH------------------HHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccc-hh------HHHHH
Confidence 88544321111 1111111111112246999999999999999986311 11 11223
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 215 LLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 215 ~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
.+...+... .... +||+++.++++++++|.+.+....
T Consensus 137 ~~~~~~~~~-~~~~-~Id~~~~~~~~~~~~I~~~l~~~~ 173 (183)
T 2vli_A 137 DRLNELRGE-QFQT-HIDTAGLGTQQVAEQIAAQVGLTL 173 (183)
T ss_dssp HHHHHHTSG-GGCS-EEECTTCCHHHHHHHHHHHHTCCC
T ss_pred HHHHhhccc-ccce-EeeCCCCCHHHHHHHHHHHHHHhc
Confidence 333444433 2234 999996569999999999997754
No 49
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.60 E-value=1.9e-14 Score=120.52 Aligned_cols=163 Identities=18% Similarity=0.248 Sum_probs=93.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccC---------CCCc-hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKST---------PPSS-IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQD 127 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~---------p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 127 (259)
+++|+|+|++||||||+++.|+++++..+++. ++.. +..+.+.+........ ......+...
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~--------~~~~~~~~~~ 100 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDD--------QMVLSLVDEK 100 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCH--------HHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcH--------HHHHHHHHHH
Confidence 45699999999999999999999998776632 1111 1222333322211111 1112222322
Q ss_pred h----CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhccCC---
Q psy16563 128 L----QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRKNF--- 199 (259)
Q Consensus 128 l----~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~--- 199 (259)
+ .+..+++|.|+...... ..+..++ .....||.+|+|++|++++.+|+.+|+..
T Consensus 101 l~~~~~~~~~ildg~p~~~~q~------------------~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~ 162 (243)
T 3tlx_A 101 LKTPQCKKGFILDGYPRNVKQA------------------EDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPS 162 (243)
T ss_dssp TTSGGGSSEEEEESCCCSHHHH------------------HHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTT
T ss_pred HhcccccCCEEecCCCCcHHHH------------------HHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCccc
Confidence 2 26778999876542111 1111111 11245899999999999999999998620
Q ss_pred -------------------------chHHHHHHHHHHHHHHHHHHHHhc-------CCC-CeEEEeCCCCCHhhHHHHHH
Q psy16563 200 -------------------------TLEENELKKNAKFRELLTTIYRNM-------NNP-ELVFVDNSEKSVHESSNDIV 246 (259)
Q Consensus 200 -------------------------~~~~~~~e~~~~~~~~~~~~y~~~-------~~~-~~~vID~s~~~~eev~~~I~ 246 (259)
.+.++. .....+++...+.+. ... .++.||++++ +++++++|.
T Consensus 163 g~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~---~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~-~~~v~~~i~ 238 (243)
T 3tlx_A 163 GRIYHKIFNPPKVPFRDDVTNEPLIQREDDN---EDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQP-ANDLEKKIS 238 (243)
T ss_dssp TEEEETTTBCCSSTTBCTTTCCBCBCCGGGS---HHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSC-HHHHHHHHH
T ss_pred CcccccccCCCcccCccccccccccCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCC-HHHHHHHHH
Confidence 011111 112223333322222 112 3788999988 999999999
Q ss_pred HHHh
Q psy16563 247 ELIH 250 (259)
Q Consensus 247 ~~l~ 250 (259)
+.|.
T Consensus 239 ~~l~ 242 (243)
T 3tlx_A 239 QHID 242 (243)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9875
No 50
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.60 E-value=2.2e-14 Score=117.96 Aligned_cols=165 Identities=14% Similarity=0.205 Sum_probs=91.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccC--------CCCc--hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH-
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKST--------PPSS--IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQD- 127 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~--------p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~- 127 (259)
++|+|+|++||||||+++.|+++++..++.. ++.+ +..+++.+........... ...+...+...
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~----~~~l~~~l~~~~ 80 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIM----VNMIKDELTNNP 80 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHH----HHHHHHHHHHCG
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHH----HHHHHHHHHhcc
Confidence 4599999999999999999999999876642 1111 1223333322111101110 01112222211
Q ss_pred hCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhccCC-------
Q psy16563 128 LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRKNF------- 199 (259)
Q Consensus 128 l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~------- 199 (259)
..+..+|+|+|+..... ...+..++ .....||++|||++|++++++|+..|+..
T Consensus 81 ~~~~~~i~dg~~~~~~~------------------~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y 142 (220)
T 1aky_A 81 ACKNGFILDGFPRTIPQ------------------AEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSY 142 (220)
T ss_dssp GGGSCEEEESCCCSHHH------------------HHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEE
T ss_pred ccCCCeEEeCCCCCHHH------------------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCcc
Confidence 13567889986543110 01111111 11345899999999999999999887510
Q ss_pred ---------------------chHHHHHHHHHHHHHHHHH----------HHHhcCCCCeEEEeCCCCCHhhHHHHHHHH
Q psy16563 200 ---------------------TLEENELKKNAKFRELLTT----------IYRNMNNPELVFVDNSEKSVHESSNDIVEL 248 (259)
Q Consensus 200 ---------------------~~~~~~~e~~~~~~~~~~~----------~y~~~~~~~~~vID~s~~~~eev~~~I~~~ 248 (259)
.+.++. ...+.+++.. .|.+ ...+++||++.+ +++++++|.+.
T Consensus 143 ~~~~~pp~~~~~d~~~~~~l~~r~dd~---~~~~~~rl~~~~~~~~~l~~~y~~--~~~~~~id~~~~-~~~v~~~i~~~ 216 (220)
T 1aky_A 143 HKIFNPPKEDMKDDVTGEALVQRSDDN---ADALKKRLAAYHAQTEPIVDFYKK--TGIWAGVDASQP-PATVWADILNK 216 (220)
T ss_dssp ETTTBCCSSTTBCTTTCCBCBCCTTCS---HHHHHHHHHHHHHHTTHHHHHHHH--HTCEEEEETTSC-HHHHHHHHHHH
T ss_pred ccccCCCcccccccccccccccCCCCC---HHHHHHHHHHHHHHHHHHHHHHHh--CCCEEEEECCCC-HHHHHHHHHHH
Confidence 011111 1112223321 2321 123788999876 99999999998
Q ss_pred Hhc
Q psy16563 249 IHN 251 (259)
Q Consensus 249 l~~ 251 (259)
|..
T Consensus 217 l~~ 219 (220)
T 1aky_A 217 LGK 219 (220)
T ss_dssp HTC
T ss_pred Hhc
Confidence 864
No 51
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.59 E-value=1.6e-14 Score=122.12 Aligned_cols=164 Identities=20% Similarity=0.238 Sum_probs=98.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh---hcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKL---KASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVV 134 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~---~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi 134 (259)
+++|+|+|++||||||+++.|++.+ |..++.. +.+.+++.+..-.......+.. .....+...+....||
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~---~~D~~~~~l~~~~~~~e~~~~~----~~~~~i~~~l~~~~vI 76 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL---GSDLIRESFPVWKEKYEEFIKK----STYRLIDSALKNYWVI 76 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE---CTHHHHTTSSSCCGGGHHHHHH----HHHHHHHHHHTTSEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEE---CchHHHHHHhhhhHHHHHHHHH----HHHHHHHHHhhCCEEE
Confidence 4579999999999999999999984 4443311 1133333221100000111111 1123344455447889
Q ss_pred EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q psy16563 135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214 (259)
Q Consensus 135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~ 214 (259)
+|+..... ...+.+..+......|+++|||+||++++.+|+.+|+.... .+.++
T Consensus 77 iD~~~~~~------------------~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~--------~~~l~ 130 (260)
T 3a4m_A 77 VDDTNYYN------------------SMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIP--------NEVIK 130 (260)
T ss_dssp ECSCCCSH------------------HHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCSSC--------HHHHH
T ss_pred EeCCcccH------------------HHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCCCC--------HHHHH
Confidence 99744321 01223333333345689999999999999999999874221 12334
Q ss_pred HHHHHHHhcC-----CCCeEEEeCCC-CCHhhHHHHHHHHHhcccc
Q psy16563 215 LLTTIYRNMN-----NPELVFVDNSE-KSVHESSNDIVELIHNLPM 254 (259)
Q Consensus 215 ~~~~~y~~~~-----~~~~~vID~s~-~~~eev~~~I~~~l~~~~~ 254 (259)
++...|++.. ..+.++||++. .+++++++.|.+.+...+.
T Consensus 131 ~~~~~~e~~~~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~~~~~ 176 (260)
T 3a4m_A 131 KMYEKFDEPGKKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSKEIPK 176 (260)
T ss_dssp HHHHHCCCTTSSCGGGCCSEEEETTSCCCHHHHHHHHHHHHTSCCC
T ss_pred HHHHHhcCccccCCCCCCEEEEeCCCCCCHHHHHHHHHhcccCCCC
Confidence 4444454321 23578999998 3699999999999876553
No 52
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.59 E-value=1.5e-14 Score=115.77 Aligned_cols=171 Identities=16% Similarity=0.266 Sum_probs=85.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhh-----cccccCCCCchHHHHHHhcccc------chH---HHHHHHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLK-----ASLKSTPPSSIMSLREKFDAHD------SLL---RRAYYSLGNYIAAQDI 124 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~-----~~~~~~p~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~~i 124 (259)
++|+|+|++||||||+++.|+++++ ..++.. .+.+++...... .+. ....... .....+.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~----~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i 78 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF----GSVMFEVAKEENLVSDRDQMRKMDPETQKRI-QKMAGRKI 78 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEH----HHHHHHHHHHTTSCSSGGGGSSCCHHHHHHH-HHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEeh----HHHHHHHHhccCCCCCHHHHhcCCHHHHHHH-HHHHHHHH
Confidence 4599999999999999999999998 444421 123333321110 110 0000000 01112334
Q ss_pred HHHhCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHH-HHhh--ccCCch
Q psy16563 125 KQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQ-RLSR--RKNFTL 201 (259)
Q Consensus 125 ~~~l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~-Rl~~--R~~~~~ 201 (259)
.+...+..||+|.+........ ...+ ++. ..+.. ..||++|||++|++++.+ |+.. |+....
T Consensus 79 ~~~~~~~~viid~~~~~~~~~~----~~~~----~~~--~~~~~-----~~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~ 143 (192)
T 1kht_A 79 AEMAKESPVAVDTHSTVSTPKG----YLPG----LPS--WVLNE-----LNPDLIIVVETTGDEILMRRMSDETRVRDLD 143 (192)
T ss_dssp HHHHTTSCEEEECCSEEEETTE----EEES----SCH--HHHHH-----HCCSEEEEEECCHHHHHHHHHTSSSCSSSCC
T ss_pred HhhccCCeEEEccceecccccc----cccc----CcH--HHHhc-----cCCCEEEEEeCCHHHHHHHHhhhcccCCCcC
Confidence 4444566777886542110000 0000 110 11111 137899999999999996 9987 763211
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563 202 EENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249 (259)
Q Consensus 202 ~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l 249 (259)
.....+......+.....|.......+++|++...++++++++|.+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 144 TASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVL 191 (192)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 111111111122222222322223345666444333999999998876
No 53
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.58 E-value=6.5e-14 Score=113.59 Aligned_cols=162 Identities=10% Similarity=0.067 Sum_probs=89.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCc-hHHHHH-HhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEE
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS-IMSLRE-KFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVM 135 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~ 135 (259)
.+|+|.|++||||||+++.|++.+|..++...... ....+. ..... +.....+. ........+...+ .+..+|+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~--~~~~~~~~-~~~~~~~~~~~~~~~g~~vii 106 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIP--LTDEDRWP-WLRSLAEWMDARADAGVSTII 106 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCC--CCHHHHHH-HHHHHHHHHHHHHHTTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCC--CCCccccc-HHHHHHHHHHHHHhcCCCEEE
Confidence 45999999999999999999999987655421110 011111 11110 00000000 0011122222222 5667777
Q ss_pred cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Q psy16563 136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL 215 (259)
Q Consensus 136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~ 215 (259)
|..+... .....+ .....+..+|||+||++++.+|+.+|+....... ..+.
T Consensus 107 d~~~~~~------------------~~~~~l----~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~~~~-------~l~~ 157 (200)
T 4eun_A 107 TCSALKR------------------TYRDVL----REGPPSVDFLHLDGPAEVIKGRMSKREGHFMPAS-------LLQS 157 (200)
T ss_dssp EECCCCH------------------HHHHHH----TTSSSCCEEEEEECCHHHHHHHHTTCSCCSSCGG-------GHHH
T ss_pred EchhhhH------------------HHHHHH----HHhCCceEEEEEeCCHHHHHHHHHhcccCCCCHH-------HHHH
Confidence 7432211 001111 1122256799999999999999999974322111 1122
Q ss_pred HHHHHHhcCC-CCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 216 LTTIYRNMNN-PELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 216 ~~~~y~~~~~-~~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
..+.++..+. ...++||++.+ ++++.++|.+.+....
T Consensus 158 ~~~~~~~~~~~~~~~~Id~~~~-~~e~~~~I~~~l~~~~ 195 (200)
T 4eun_A 158 QLATLEALEPDESGIVLDLRQP-PEQLIERALTWLDIAP 195 (200)
T ss_dssp HHHHCCCCCTTSCEEEEETTSC-HHHHHHHHHHHHCCCG
T ss_pred HHHHhCCCCCCCCeEEEECCCC-HHHHHHHHHHHHHhcc
Confidence 2222333332 35799999885 9999999999997653
No 54
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.55 E-value=8.6e-14 Score=115.05 Aligned_cols=163 Identities=15% Similarity=0.143 Sum_probs=90.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCC--------CCc--hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTP--------PSS--IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQD 127 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p--------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 127 (259)
.++|+|+|++||||||+++.|++.++..++... +.+ +..+++.+............ ..+.+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~----~~~~~~l~~~ 82 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMT----RLALHELKNL 82 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHH----HHHHHHHHTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHH----HHHHHHHhcc
Confidence 356999999999999999999999987766321 000 11222333221111010000 0111222111
Q ss_pred hCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc-----CC---
Q psy16563 128 LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK-----NF--- 199 (259)
Q Consensus 128 l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~-----~~--- 199 (259)
.+..+|+|+|.... .+. ..+.. ...||++|||++|++++.+|+..|+ +.
T Consensus 83 -~~~~~vid~~~~~~--~~~----------------~~l~~----~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~ 139 (227)
T 1zd8_A 83 -TQYSWLLDGFPRTL--PQA----------------EALDR----AYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYN 139 (227)
T ss_dssp -TTSCEEEESCCCSH--HHH----------------HHHHT----TSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEE
T ss_pred -cCCCEEEeCCCCCH--HHH----------------HHHHH----hcCCCEEEEEECCHHHHHHHHHcCcCCCccCCccc
Confidence 35678899876431 110 11111 1458899999999999999998873 10
Q ss_pred --------------------chHHHHHHHHHHHHHHHHHHHHhc-------C--CCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563 200 --------------------TLEENELKKNAKFRELLTTIYRNM-------N--NPELVFVDNSEKSVHESSNDIVELIH 250 (259)
Q Consensus 200 --------------------~~~~~~~e~~~~~~~~~~~~y~~~-------~--~~~~~vID~s~~~~eev~~~I~~~l~ 250 (259)
.+.++. ...+.+++ ..|.+. + ...+++||++ + +++++++|.+.+.
T Consensus 140 ~~~~pp~~~~~~~~~~~~l~~r~~~~---~e~~~~r~-~~y~~~~~~l~~~y~~~~~~~~id~~-~-~~~v~~~i~~~l~ 213 (227)
T 1zd8_A 140 IEFNPPKTVGIDDLTGEPLIQREDDK---PETVIKRL-KAYEDQTKPVLEYYQKKGVLETFSGT-E-TNKIWPYVYAFLQ 213 (227)
T ss_dssp TTTBCCSSTTBCTTTCCBCBCCGGGS---HHHHHHHH-HHHHHHHHHHHHHHHHHTCEEEEECS-S-HHHHHHHHHHHHT
T ss_pred cccCCCCcccccccccccccCCCCCC---HHHHHHHH-HHHHHHHHHHHHHHHccCCEEEEeCC-C-HHHHHHHHHHHHH
Confidence 011111 11122222 223221 1 1237899998 5 9999999999997
Q ss_pred ccc
Q psy16563 251 NLP 253 (259)
Q Consensus 251 ~~~ 253 (259)
...
T Consensus 214 ~~~ 216 (227)
T 1zd8_A 214 TKV 216 (227)
T ss_dssp TTS
T ss_pred hhc
Confidence 653
No 55
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.54 E-value=1.1e-13 Score=109.02 Aligned_cols=153 Identities=18% Similarity=0.257 Sum_probs=79.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHH-----HHHHHHHHHHHHhC-CC
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL-----GNYIAAQDIKQDLQ-KQ 131 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~l~-~~ 131 (259)
..+|+|+|++||||||+++.|+++++..++... ..+++..... + . .++.. .+....+.+..... +.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D----~~~~~~~g~~--~-~-~~~~~~g~~~~~~~~~~~l~~~~~~~~ 78 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTD----MIISERVGLS--V-R-EIFEELGEDNFRMFEKNLIDELKTLKT 78 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH----HHHHHHHTSC--H-H-HHHHHTCHHHHHHHHHHHHHHHHTCSS
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEECh----HHHHHHhCCC--H-H-HHHHHhCHHHHHHHHHHHHHHHHhcCC
Confidence 346999999999999999999999998776431 1111111110 0 0 01000 00111122333333 33
Q ss_pred c-EEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHH-HHHHH
Q psy16563 132 P-VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEEN-ELKKN 209 (259)
Q Consensus 132 ~-vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~-~~e~~ 209 (259)
. |+.. ++++... .. +..+|.+|||++|++++.+|+.+|....+... +.+..
T Consensus 79 ~~Vi~~---------------g~g~~~~-----~~-------l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~ 131 (168)
T 1zuh_A 79 PHVIST---------------GGGIVMH-----EN-------LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQA 131 (168)
T ss_dssp CCEEEC---------------CGGGGGC-----GG-------GTTSEEEEEEECCHHHHHHHHCC--------CCTTHHH
T ss_pred CEEEEC---------------CCCEech-----hH-------HhcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHH
Confidence 3 4431 1122100 11 12368999999999999999988721011000 01112
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563 210 AKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249 (259)
Q Consensus 210 ~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l 249 (259)
..........|... ..++||+++ ++++++++|.+.+
T Consensus 132 ~~~~~~r~~~~~~~---a~~~Id~~~-~~e~~~~~I~~~l 167 (168)
T 1zuh_A 132 KELFEKRQALYEKN---ASFIIDARG-GLNNSLKQVLQFI 167 (168)
T ss_dssp HHHHHHHHHHHHHT---CSEEEEGGG-CHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH---CCEEEECCC-CHHHHHHHHHHHh
Confidence 22223333445433 348899999 5999999988755
No 56
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=99.54 E-value=6.9e-15 Score=125.67 Aligned_cols=162 Identities=13% Similarity=0.157 Sum_probs=99.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccc-----cCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh--CC
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLK-----STPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL--QK 130 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l--~~ 130 (259)
..+|+|+|.+||||||+++.|.+++...++ .+|+ ...++ .+ ...++.+.+ +|
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt--~eE~~-----~~--------------yl~R~~~~LP~~G 144 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPT--ETERG-----QW--------------YFQRYVATFPTAG 144 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCC--HHHHT-----SC--------------TTHHHHTTCCCTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcC--hHHHh-----ch--------------HHHHHHHhcccCC
Confidence 456999999999999999999999987643 2332 22221 11 112334444 69
Q ss_pred CcEEEcCCccchhhhhhhhhhccccCCCCCc----chhhhhc---ccccCCCCCEEEEEecCHHHHHHHHhhccC-----
Q psy16563 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPD----EDDDIYS---WPKDLMKPDLVIYLTVSEAIRLQRLSRRKN----- 198 (259)
Q Consensus 131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~----~~~~l~~---~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~----- 198 (259)
.+||+||||++.+++... .+..+ .+ .+.++.. ++.....|++++||++|+++..+|+..|..
T Consensus 145 ~IvIfDRswYs~v~~~rv---~g~~~---~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~ 218 (304)
T 3czq_A 145 EFVLFDRSWYNRAGVEPV---MGFCT---PDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPLKI 218 (304)
T ss_dssp CEEEEEECGGGGTTHHHH---HTSSC---HHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCTTTG
T ss_pred eEEEEECCcchHHHHHHH---hcCCC---HHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCcccc
Confidence 999999999999888643 22221 11 1222222 233345799999999999999999987742
Q ss_pred --CchHHHHHHHHHHHHHHHHHHHHhc----C--CCCeEEEeCCCCC--HhhHHHHHHHHH
Q psy16563 199 --FTLEENELKKNAKFRELLTTIYRNM----N--NPELVFVDNSEKS--VHESSNDIVELI 249 (259)
Q Consensus 199 --~~~~~~~~e~~~~~~~~~~~~y~~~----~--~~~~~vID~s~~~--~eev~~~I~~~l 249 (259)
.++.+.. ..+++.+...+|.++ . ..+|++||++.+. .-.+.+.|.+.|
T Consensus 219 Wk~s~~D~~---~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il~~l 276 (304)
T 3czq_A 219 WKLSPMDIA---ALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKL 276 (304)
T ss_dssp GGCCHHHHH---GGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHH---HHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHHHHH
Confidence 1222211 233445555555544 1 3479999999851 233444444444
No 57
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.53 E-value=5.2e-13 Score=108.92 Aligned_cols=158 Identities=18% Similarity=0.161 Sum_probs=94.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhccccc---------CCCC-chHHHHHHhccc-----cch----HHHHHHHH--HH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS---------TPPS-SIMSLREKFDAH-----DSL----LRRAYYSL--GN 117 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~---------~p~~-~~~~~~~~~~~~-----~~~----~~~~~~~~--~~ 117 (259)
.-|+|+|.+||||||+++.|++ +|..++. .|+. ....+.+.|+.+ +.+ +....|.. .+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~ 88 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR 88 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence 4599999999999999999998 8887653 3443 346666666532 222 22223321 12
Q ss_pred HHHHHHHHHHh-----------CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchh--hhhcccccCCCCCEEEEEec
Q psy16563 118 YIAAQDIKQDL-----------QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD--DIYSWPKDLMKPDLVIYLTV 184 (259)
Q Consensus 118 ~~~~~~i~~~l-----------~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~--~l~~~~~~~~~pdlvI~L~a 184 (259)
..+...+.|.. .+..|++|- |-.++ .+. ...|.+|+++|
T Consensus 89 ~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~----------------------pLL~E~~~~~------~~~D~vi~V~a 140 (210)
T 4i1u_A 89 RRLEAITHPLIRAETEREARDAQGPYVIFVV----------------------PLLVESRNWK------ARCDRVLVVDC 140 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC----------------------TTCTTCHHHH------HHCSEEEEEEC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE----------------------ecccccCCcc------ccCCeEEEEEC
Confidence 33344444321 133556652 11111 111 11588999999
Q ss_pred CHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCC-CCCHhhHHHHHHHHHhcc
Q psy16563 185 SEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS-EKSVHESSNDIVELIHNL 252 (259)
Q Consensus 185 ~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s-~~~~eev~~~I~~~l~~~ 252 (259)
|++++.+|+.+|++.+.++.. .....+...+.+.+. ..++|||+ ++ ++++.++|.+++..+
T Consensus 141 p~e~r~~Rl~~Rdg~s~eea~---~ri~~Q~~~eek~~~---AD~VIdN~~gs-le~l~~qV~~l~~~~ 202 (210)
T 4i1u_A 141 PVDTQIARVMQRNGFTREQVE---AIIARQATREARLAA---ADDVIVNDAAT-PDALAVQVDALHQRY 202 (210)
T ss_dssp CHHHHHHHHHHHHCCCHHHHH---HHHHHSCCHHHHHHT---CSEEEECSSCC-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCHHHHH---HHHHHcCChHHHHHh---CCEEEECCCCC-HHHHHHHHHHHHHHH
Confidence 999999999999766544321 111111111222222 24899999 76 999999999888765
No 58
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.52 E-value=2.3e-13 Score=108.57 Aligned_cols=159 Identities=18% Similarity=0.197 Sum_probs=84.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHH-HhccccchHHHHHHHHHH-----HHHHHHHHHHh-CCC
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLRE-KFDAHDSLLRRAYYSLGN-----YIAAQDIKQDL-QKQ 131 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~l-~~~ 131 (259)
+.|+|.|++||||||+++.|++.++..++.. +.+.+ ..... +. .++.... ......+.... ...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~-----d~~~~~~~g~~--~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~ 76 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDS-----DKEIEKRTGAD--IA--WIFEMEGEAGFRRREREMIEALCKLDN 76 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEH-----HHHHHHHHTSC--HH--HHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEC-----hHHHHHHcCCC--hh--hHHHHhCHHHHHHHHHHHHHHHHhcCC
Confidence 4599999999999999999999999877643 22222 22111 10 1111111 11112233333 233
Q ss_pred cEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHH--hhccC-Cch-HHHHHH
Q psy16563 132 PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL--SRRKN-FTL-EENELK 207 (259)
Q Consensus 132 ~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl--~~R~~-~~~-~~~~~e 207 (259)
.|+.. |++. ..-+.....+.. .+++|||++|++++.+|+ ..|.. ... .....+
T Consensus 77 ~vi~~---------------gg~~-~~~~~~~~~l~~-------~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~ 133 (185)
T 3trf_A 77 IILAT---------------GGGV-VLDEKNRQQISE-------TGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKE 133 (185)
T ss_dssp CEEEC---------------CTTG-GGSHHHHHHHHH-------HEEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHH
T ss_pred cEEec---------------CCce-ecCHHHHHHHHh-------CCcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHH
Confidence 44432 1111 000011111111 236999999999999999 44321 110 111011
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 208 KNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 208 ~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
............|.+.+ .++||+++.++++++++|.+.+...
T Consensus 134 ~l~~~~~~r~~~y~~~a---d~~Idt~~~~~~e~~~~I~~~l~~~ 175 (185)
T 3trf_A 134 KLQQLNEIRKPLYQAMA---DLVYPTDDLNPRQLATQILVDIKQT 175 (185)
T ss_dssp HHHHHHHHHHHHHHHHC---SEEEECTTCCHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHhhcC---CEEEECCCCCHHHHHHHHHHHHHHH
Confidence 12222333344454433 4999999966999999999988764
No 59
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.51 E-value=3e-13 Score=106.61 Aligned_cols=158 Identities=13% Similarity=0.138 Sum_probs=81.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHH-HHhccccchHHHHHHHHHHH----HHHHHHHHHhCCCcE
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLR-EKFDAHDSLLRRAYYSLGNY----IAAQDIKQDLQKQPV 133 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~l~~~~v 133 (259)
++|+|+|++||||||+++.|++.++..++.. +.+. +..+.. . . .++..... .....+...+.+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~-----d~~~~~~~g~~--~-~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT-----DIFMQHTSGMT--V-A-DVVAAEGWPGFRRRESEALQAVATPNR 73 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH-----HHHHHHHHCSC--H-H-HHHHHHHHHHHHHHHHHHHHHHCCSSE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc-----cHHHHHHhCCC--H-H-HHHHHcCHHHHHHHHHHHHHHhhcCCe
Confidence 3599999999999999999999999876642 1221 111111 1 0 01110000 111111122223333
Q ss_pred EEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHh--hc-cC-CchH-HHHHHH
Q psy16563 134 VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLS--RR-KN-FTLE-ENELKK 208 (259)
Q Consensus 134 i~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~--~R-~~-~~~~-~~~~e~ 208 (259)
|++. |++. ...+.....+. .++++|||++|++++.+|+. .| +. .... +...+.
T Consensus 74 vi~~--------------g~~~-~~~~~~~~~l~-------~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~ 131 (173)
T 1e6c_A 74 VVAT--------------GGGM-VLLEQNRQFMR-------AHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEE 131 (173)
T ss_dssp EEEC--------------CTTG-GGSHHHHHHHH-------HHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHH
T ss_pred EEEC--------------CCcE-EeCHHHHHHHH-------cCCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHH
Confidence 3331 1110 00011111111 15789999999999999999 77 32 1111 111111
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 209 NAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 209 ~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
...........|.. ..++||+++.+++++.++|.+.+..
T Consensus 132 ~~~~~~~~~~~~~~----~~~~Id~~~~~~~~~~~~i~~~l~~ 170 (173)
T 1e6c_A 132 MEAVLREREALYQD----VAHYVVDATQPPAAIVCELMQTMRL 170 (173)
T ss_dssp HHHHHHHHHHHHHH----HCSEEEETTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh----CcEEEECCCCCHHHHHHHHHHHhcc
Confidence 11112222222322 3488999965599999999988753
No 60
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.51 E-value=3.9e-14 Score=113.45 Aligned_cols=170 Identities=14% Similarity=0.074 Sum_probs=87.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEEcC
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDR 137 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~Dr 137 (259)
.+|+|+|++||||||+++.|++.++.......-...+.++..+..+..+........ ...........+ .|..|++|+
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~~~~~g~~vi~d~ 92 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRH-LKRIAWIARLLARNGVIVICSF 92 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHH-HHHHHHHHHHHHTTTCEEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChhhHHHH-HHHHHHHHHHHHhCCCEEEEeC
Confidence 459999999999999999999998753211100112334332222111111000000 000011111122 577888897
Q ss_pred CccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHH
Q psy16563 138 FWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217 (259)
Q Consensus 138 ~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~ 217 (259)
+.. +... .+.+..+......|+++|||++|++++.+|+..+. ..+... + ....+....
T Consensus 93 ~~~----~~~~--------------r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~-~~~~~~--~-~~~~~~~~~ 150 (186)
T 2yvu_A 93 VSP----YKQA--------------RNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGL-YKKALK--G-ELENFTGIT 150 (186)
T ss_dssp CCC----CHHH--------------HHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHH-HHHHHT--T-CCSSCHHHH
T ss_pred ccc----cHHH--------------HHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhh-hhHHhh--c-chhhhhhhh
Confidence 532 1110 11111112222358999999999999999975321 000000 0 011112222
Q ss_pred HHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 218 TIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 218 ~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
..|.+. ..++++||+++.++++++++|.+.+...
T Consensus 151 ~~y~~~-~~~~~~Id~~~~~~~ev~~~I~~~l~~~ 184 (186)
T 2yvu_A 151 DPYEPP-ENPQLVLDTESNTIEHNVSYLYSLVKAV 184 (186)
T ss_dssp SCCCCC-SSCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred hcccCC-CCCcEEEECCCCCHHHHHHHHHHHHHHh
Confidence 333322 2246999999656999999999988653
No 61
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.50 E-value=4.1e-13 Score=105.42 Aligned_cols=160 Identities=14% Similarity=0.161 Sum_probs=81.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCc----hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcE
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS----IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPV 133 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~v 133 (259)
+.|+|+|++||||||+++.|+++++..++...... +..+++.+..... ..|. ......+..+. .+..|
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g~~~~~~~~~~~~----~~~~---~~~~~~l~~l~~~~~~V 73 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREGLSIPQIFEKKGE----AYFR---KLEFEVLKDLSEKENVV 73 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHSCH----HHHH---HHHHHHHHHHTTSSSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcCCCHHHHHHHhCh----HHHH---HHHHHHHHHHhccCCeE
Confidence 45999999999999999999999997766421000 0011111111100 0010 01111222222 34455
Q ss_pred EEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHH
Q psy16563 134 VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFR 213 (259)
Q Consensus 134 i~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~ 213 (259)
|.+.. ... . .+.....+ ..+|++|||++|++++.+|+..|+.........+.....+
T Consensus 74 i~~g~----~~~---------~---~~~~~~~l-------~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~ 130 (168)
T 2pt5_A 74 ISTGG----GLG---------A---NEEALNFM-------KSRGTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLF 130 (168)
T ss_dssp EECCH----HHH---------T---CHHHHHHH-------HTTSEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHH
T ss_pred EECCC----CEe---------C---CHHHHHHH-------HcCCEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHH
Confidence 55411 000 0 00111111 1268999999999999999988742111110011111222
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 214 ELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 214 ~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
......|.. ..++||++.+ ++++.++|.+.+...+
T Consensus 131 ~~~~~~~~~----~~~~i~~~~~-~~~~~~~i~~~l~~~~ 165 (168)
T 2pt5_A 131 EERRKIYSK----ADIKVKGEKP-PEEVVKEILLSLEGNA 165 (168)
T ss_dssp HHHHHHHTT----SSEEEECSSC-HHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHh----CCEEECCCCC-HHHHHHHHHHHHHhcc
Confidence 222333322 2345544444 9999999999987653
No 62
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.50 E-value=6.2e-14 Score=111.12 Aligned_cols=160 Identities=12% Similarity=0.021 Sum_probs=77.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH-HhhcccccCCCCchHHHHHHhccc-c----chHHHHHHHHHHHHHHHHHHHHh----
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAK-KLKASLKSTPPSSIMSLREKFDAH-D----SLLRRAYYSLGNYIAAQDIKQDL---- 128 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~-~~~~~~~~~p~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~i~~~l---- 128 (259)
.+|+|.|++||||||+++.|++ .++..++.. +.+++.+... . .+..... ........+.+...+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~-----d~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~ 76 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR-----DDYRQSIMAHEERDEYKYTKKKE-GIVTGMQFDTAKSILYGGD 76 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH-----HHHHHHHTTSCCGGGCCCCHHHH-HHHHHHHHHHHHHHHTSCS
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEecH-----HHHHHHhhCCCccchhhhchhhh-hHHHHHHHHHHHHHHhhcc
Confidence 3699999999999999999999 566655532 4455443221 1 1211000 000112233445544
Q ss_pred CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK 208 (259)
Q Consensus 129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~ 208 (259)
.|..||+|.+..+.... ..+..+......+..+|||++|++++.+|+..|+.....
T Consensus 77 ~g~~vi~d~~~~~~~~~------------------~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~------ 132 (181)
T 1ly1_A 77 SVKGVIISDTNLNPERR------------------LAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVP------ 132 (181)
T ss_dssp SCCEEEECSCCCSHHHH------------------HHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGCCC------
T ss_pred CCCeEEEeCCCCCHHHH------------------HHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccCCCC------
Confidence 47889999876543111 111111111123557999999999999999999742211
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 209 NAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 209 ~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
.+.+++....|.+....+.++||++.+ +++..+|...+..
T Consensus 133 -~~~i~~~~~~~~~~~~~~~~~id~~~~--~~v~~~i~~~l~~ 172 (181)
T 1ly1_A 133 -IDVLRSMYKSMREYLGLPVYNGTPGKP--KAVIFDVDGTLAK 172 (181)
T ss_dssp -HHHHHHHHHHHHHHHTCCCC----------------------
T ss_pred -HHHHHHHHHHhhccCCCCccccCCCCC--ceeeehhhhhhhc
Confidence 123344444455443223455887753 7777777776654
No 63
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.50 E-value=6.2e-14 Score=117.79 Aligned_cols=160 Identities=15% Similarity=0.118 Sum_probs=85.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHH-----HHHHHHHHHHHh-C
Q psy16563 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG-----NYIAAQDIKQDL-Q 129 (259)
Q Consensus 56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~l-~ 129 (259)
+.. |+|.|++||||||+++.|++.++..++.. +.+.+.......+ ..++... +....+.+.... .
T Consensus 48 g~~--i~l~G~~GsGKSTl~~~La~~lg~~~~d~-----d~~~~~~~~g~~i--~~i~~~~ge~~fr~~e~~~l~~l~~~ 118 (250)
T 3nwj_A 48 GRS--MYLVGMMGSGKTTVGKIMARSLGYTFFDC-----DTLIEQAMKGTSV--AEIFEHFGESVFREKETEALKKLSLM 118 (250)
T ss_dssp TCC--EEEECSTTSCHHHHHHHHHHHHTCEEEEH-----HHHHHHHSTTSCH--HHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CCE--EEEECCCCCCHHHHHHHHHHhcCCcEEeC-----cHHHHHHhcCccH--HHHHHHhCcHHHHHHHHHHHHHHHhh
Confidence 555 99999999999999999999999877643 1222111111111 0111110 111112233332 2
Q ss_pred -CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchH-HH---
Q psy16563 130 -KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE-EN--- 204 (259)
Q Consensus 130 -~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~-~~--- 204 (259)
...||.. |+|.. ..++....+ . .+++|||++|++++.+|+.+|+...+. ..
T Consensus 119 ~~~~Via~---------------GgG~v-~~~~~~~~l----~----~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~ 174 (250)
T 3nwj_A 119 YHQVVVST---------------GGGAV-IRPINWKYM----H----KGISIWLDVPLEALAHRIAAVGTGSRPLLHDDE 174 (250)
T ss_dssp CSSEEEEC---------------CGGGG-GSHHHHHHH----T----TSEEEEEECCHHHHHHHHHC-------------
T ss_pred cCCcEEec---------------CCCee-cCHHHHHHH----h----CCcEEEEECCHHHHHHHHhhcCCCCCCcccCCC
Confidence 3455544 22320 001111111 1 378999999999999999864311110 00
Q ss_pred -------HHHHHHHHHHHHHHHHHhcCCCCeEEE------------eCCCCCHhhHHHHHHHHHhcc
Q psy16563 205 -------ELKKNAKFRELLTTIYRNMNNPELVFV------------DNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 205 -------~~e~~~~~~~~~~~~y~~~~~~~~~vI------------D~s~~~~eev~~~I~~~l~~~ 252 (259)
..+.....++.....|.. ..++| |+++.++++++++|.+.+...
T Consensus 175 ~~d~~~~~~~~l~~l~~eR~~lY~~----ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~ 237 (250)
T 3nwj_A 175 SGDTYTAALNRLSTIWDARGEAYTK----ASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSY 237 (250)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTT----SSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHhh----CCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 011122233333344432 33555 899888999999999999765
No 64
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.49 E-value=4.3e-13 Score=107.02 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=84.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHH-HHhcccc-chHH---HHHHHHHHHHHHHHHHHHh-CCCc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLR-EKFDAHD-SLLR---RAYYSLGNYIAAQDIKQDL-QKQP 132 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~-~~~~~~~-~~~~---~~~~~~~~~~~~~~i~~~l-~~~~ 132 (259)
++|+|+|++||||||+++.|++.+|..++.. +.+. +.++... .+.. ...|. ....+.+...+ ....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~-----D~~~~~~~g~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~ 74 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT-----DVAIEQRTGRSIADIFATDGEQEFR---RIEEDVVRAALADHDG 74 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH-----HHHHHHHHSSCHHHHHHHHCHHHHH---HHHHHHHHHHHHHCCS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC-----chHHHHHcCCCHHHHHHHhChHHHH---HHHHHHHHHHHhcCCe
Confidence 4599999999999999999999999877642 2222 2222110 0000 00110 11112223222 2334
Q ss_pred EEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCch--HHHHHHHHH
Q psy16563 133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL--EENELKKNA 210 (259)
Q Consensus 133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~--~~~~~e~~~ 210 (259)
|+.... ++... +.....+ . .+.+|||+||++++.+|+..|+.... .....+...
T Consensus 75 vi~~g~---------------~~v~~-~~~~~~l----~----~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~ 130 (184)
T 2iyv_A 75 VLSLGG---------------GAVTS-PGVRAAL----A----GHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYR 130 (184)
T ss_dssp EEECCT---------------TGGGS-HHHHHHH----T----TSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHH
T ss_pred EEecCC---------------cEEcC-HHHHHHH----c----CCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHH
Confidence 443311 00000 0011111 1 45799999999999999998853110 011011111
Q ss_pred HHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 211 KFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 211 ~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
.........|... ..++||+++.++++++++|.+.+...
T Consensus 131 ~~~~~r~~~~~~~---~~~~Idt~~~s~ee~~~~I~~~l~~~ 169 (184)
T 2iyv_A 131 ALMAKRAPLYRRV---ATMRVDTNRRNPGAVVRHILSRLQVP 169 (184)
T ss_dssp HHHHHHHHHHHHH---CSEEEECSSSCHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHhcc---CCEEEECCCCCHHHHHHHHHHHHhhc
Confidence 2222223344333 24899999656999999999888654
No 65
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.48 E-value=1.2e-12 Score=107.24 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=45.5
Q ss_pred CCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHH--HHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 175 KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL--TTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 175 ~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~--~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
.+|++|||++|++++.+|+..|++.+..+. ....... ...|...+ .++||++++ ++++.++|.+.+..+
T Consensus 125 ~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~~-----~~~~~~~~~~~~~~~~a---d~vId~~~~-~~~~~~~I~~~l~~~ 195 (218)
T 1vht_A 125 KANRVLVVDVSPETQLKRTMQRDDVTREHV-----EQILAAQATREARLAVA---DDVIDNNGA-PDAIASDVARLHAHY 195 (218)
T ss_dssp GCSEEEEEECCHHHHHHHHHHHHTCCHHHH-----HHHHHHSCCHHHHHHHC---SEEEECSSC-TTSHHHHHHHHHHHH
T ss_pred cCCEEEEEECCHHHHHHHHHHcCCCCHHHH-----HHHHHhcCChHHHHHhC---CEEEECCCC-HHHHHHHHHHHHHHH
Confidence 378999999999999999999865432211 1111110 11122222 388999984 999999999888654
No 66
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.47 E-value=1.3e-12 Score=103.33 Aligned_cols=159 Identities=15% Similarity=0.118 Sum_probs=86.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCc-hHHHHH-HhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEE
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS-IMSLRE-KFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVM 135 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~ 135 (259)
.+|+|.|++||||||+++.|++.+|..++...... ...+++ .+... +........ .......+...+ .+..+|+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~vi 85 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEP--LNDDDRKPW-LQALNDAAFAMQRTNKVSLI 85 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCC--CCHHHHHHH-HHHHHHHHHHHHHHCSEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcC--CCccccccH-HHHHHHHHHHHHhcCCcEEE
Confidence 35999999999999999999999887665431110 111221 11111 100000000 011122333333 3666777
Q ss_pred cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCC-EEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q psy16563 136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPD-LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214 (259)
Q Consensus 136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pd-lvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~ 214 (259)
|..... +.....+.. . .++ .+|||+||++++.+|+..|++...... ..+
T Consensus 86 ~~~~~~------------------~~~~~~l~~----~-~~~~~vv~l~~~~e~~~~R~~~R~~~~~~~~-------~~~ 135 (175)
T 1knq_A 86 VCSALK------------------KHYRDLLRE----G-NPNLSFIYLKGDFDVIESRLKARKGHFFKTQ-------MLV 135 (175)
T ss_dssp ECCCCS------------------HHHHHHHHT----T-CTTEEEEEEECCHHHHHHHHHTSTTCCCCHH-------HHH
T ss_pred EeCchH------------------HHHHHHHHh----c-CCCEEEEEEECCHHHHHHHHHhccCCCCchH-------HHH
Confidence 732110 000111111 1 135 699999999999999999974321111 111
Q ss_pred HHHHHHHhc-C-CCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 215 LLTTIYRNM-N-NPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 215 ~~~~~y~~~-~-~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
.....++.. + ....++||++.+ ++++.++|.+.+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~Id~~~~-~~~~~~~i~~~l~~ 173 (175)
T 1knq_A 136 TQFETLQEPGADETDVLVVDIDQP-LEGVVASTIEVIKK 173 (175)
T ss_dssp HHHHHCCCCCTTCTTEEEEECSSC-HHHHHHHHHHHHHC
T ss_pred HHHHhhhCcccCCCCeEEEeCCCC-HHHHHHHHHHHHhc
Confidence 111223332 2 235799999965 99999999988753
No 67
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.47 E-value=9.2e-13 Score=104.34 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=83.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHH-HHhcccc-chHHHHHHHHHHHHHHHHHHHHhCCCcEEEcC
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLR-EKFDAHD-SLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDR 137 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~Dr 137 (259)
.|+|.|++||||||+++.|++.++..++.. +.+. ....... .+....-....+......+..+.....++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~-----d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~ 80 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS-----DFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIAT 80 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH-----HHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc-----cHHHHHHcCCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEEC
Confidence 599999999999999999999999877642 2222 1111110 00000000000011112233333333333331
Q ss_pred CccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc--CCchHHHHHHHHHHHHHH
Q psy16563 138 FWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK--NFTLEENELKKNAKFREL 215 (259)
Q Consensus 138 ~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~--~~~~~~~~~e~~~~~~~~ 215 (259)
|++... . .. + ...+.+|||++|++++.+|+.+|. ....... .+......+.
T Consensus 81 --------------g~~~~~---~-~~-l-------~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~-~~~i~~~~~~ 133 (175)
T 1via_A 81 --------------GGGFVN---V-SN-L-------EKAGFCIYLKADFEYLKKRLDKDEISKRPLFYD-EIKAKKLYNE 133 (175)
T ss_dssp --------------CTTGGG---S-TT-G-------GGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCC-HHHHHHHHHH
T ss_pred --------------CCCEeh---h-hH-H-------hcCCEEEEEeCCHHHHHHHHhcccCCCCCCccc-HHHHHHHHHH
Confidence 111100 0 00 1 114679999999999999998773 1111100 1112222233
Q ss_pred HHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 216 LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 216 ~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
....|.+. ..++||+++.+++++++.|.+.+..-.
T Consensus 134 r~~~y~~~---~~~~Idt~~~~~eev~~~I~~~l~~~~ 168 (175)
T 1via_A 134 RLSKYEQK---ANFILNIENKNIDELLSEIKKVIKEGG 168 (175)
T ss_dssp HHHHHHHH---CSEEEECTTCCHHHHHHHHHHHHC---
T ss_pred HHHHHHhc---CCEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 33444332 359999997669999999999987543
No 68
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.47 E-value=1.1e-12 Score=106.71 Aligned_cols=75 Identities=8% Similarity=0.108 Sum_probs=49.6
Q ss_pred CEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcC-----CC--CeEEEeCCCCCHhhHHHHHHHHH
Q psy16563 177 DLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN-----NP--ELVFVDNSEKSVHESSNDIVELI 249 (259)
Q Consensus 177 dlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~-----~~--~~~vID~s~~~~eev~~~I~~~l 249 (259)
.++|||++|++++.+|+.+|.+.+..+.. +......+.....|.... .+ ..++||++..+++++++.|.+.+
T Consensus 118 ~~~V~L~A~~e~r~~R~~~~~~~~~~~~~-~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i 196 (201)
T 3fdi_A 118 MISAFILGDKDTKTKRVMEREGVDEKTAL-NMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYI 196 (201)
T ss_dssp EEEEEEEECHHHHHHHHHHHHTCCHHHHH-HHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHH
Confidence 47999999999999999887544322211 111112223333444431 11 25999999988999999999998
Q ss_pred hcc
Q psy16563 250 HNL 252 (259)
Q Consensus 250 ~~~ 252 (259)
...
T Consensus 197 ~~~ 199 (201)
T 3fdi_A 197 DSR 199 (201)
T ss_dssp HTC
T ss_pred HHh
Confidence 764
No 69
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.44 E-value=4.8e-13 Score=109.36 Aligned_cols=164 Identities=17% Similarity=0.134 Sum_probs=86.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhh------cccccCCCCchHHHHHHhccccchHHHHHHHHHHH----HHHHHHHHHh
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLK------ASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNY----IAAQDIKQDL 128 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~l 128 (259)
++|+|+|++||||||+++.|++.++ ..++. .+.++..+.....+. ...+. .....+.+.+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~-----~d~~r~~l~~~~~~~-----~~~r~~~~~~~~~~~~~~l 95 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD-----GDNIRFGLNKDLGFS-----EADRNENIRRIAEVAKLFA 95 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC-----HHHHTTTTTTTCCSS-----HHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC-----ChHHhhhhccccCCC-----HHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999999987 22221 222322221111110 01111 1122233444
Q ss_pred -CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccc---cCCCCCEEEEEecCHHHHHHHHhhccCCchHHH
Q psy16563 129 -QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK---DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEEN 204 (259)
Q Consensus 129 -~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~---~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~ 204 (259)
.|..||+| |. + .|...+ +....+..+.. ....|+++|||++|++++.+|+ .|+- ...
T Consensus 96 ~~g~~VI~d-~~-~--~~~~~~-----------~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~-~r~~---~~~ 156 (211)
T 1m7g_A 96 DSNSIAITS-FI-S--PYRKDR-----------DTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD-PKGL---YKK 156 (211)
T ss_dssp HTTCEEEEE-CC-C--CCHHHH-----------HHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC-TTCH---HHH
T ss_pred HCCCEEEEe-cC-C--ccHHHH-----------HHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh-hHHH---HHH
Confidence 57889999 44 2 221100 01112222211 2346899999999999999996 2210 000
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 205 ELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 205 ~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
..+......+.+...|+.. ..+.++||+++.++++++++|.+.+...
T Consensus 157 ~r~~~~~~~~~~~~~y~~~-~~~~~~IDt~~~s~eev~~~I~~~l~~~ 203 (211)
T 1m7g_A 157 AREGVIKEFTGISAPYEAP-ANPEVHVKNYELPVQDAVKQIIDYLDTK 203 (211)
T ss_dssp HHHTSSSSCBTTTBCCCCC-SSCSEEEECSSSCHHHHHHHHHHHHHHT
T ss_pred HHhcchhhhhhhhhhccCC-CCCeEEEECCCCCHHHHHHHHHHHHHHc
Confidence 0000000000111112111 1235899999955999999999999764
No 70
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.40 E-value=8.5e-12 Score=99.13 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=26.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
++|+|+|++||||||+++.|++.++..++.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 349999999999999999999999877663
No 71
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.39 E-value=6.5e-12 Score=100.42 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=27.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHH-hhccccc
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKK-LKASLKS 88 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~-~~~~~~~ 88 (259)
+.++|+|+|++||||||+++.|++. +|..++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 3456999999999999999999999 7877664
No 72
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.39 E-value=1.3e-11 Score=103.76 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=44.9
Q ss_pred CCEEEEEecCHHHHHHHHhh-----ccCCchHHHHHHHHHHHHHHHH-H---HHHhcCC-CCeEEEeCCCCCHhhHHHHH
Q psy16563 176 PDLVIYLTVSEAIRLQRLSR-----RKNFTLEENELKKNAKFRELLT-T---IYRNMNN-PELVFVDNSEKSVHESSNDI 245 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~-----R~~~~~~~~~~e~~~~~~~~~~-~---~y~~~~~-~~~~vID~s~~~~eev~~~I 245 (259)
.+++|||+||++++.+|+.+ +...+.++. .....++.. + ....+.. .+.++||+++.+++++++.|
T Consensus 163 ~~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~----~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~~eev~~~I 238 (252)
T 4e22_A 163 APVKIFLDASSQERAHRRMLQLQERGFNVNFERL----LAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQA 238 (252)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHH----HHHHC------------CCCCCTTEEEEECSSSCHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHH----HHHHHHHHHHhhhccccchhccCCeEEEECcCCCHHHHHHHH
Confidence 57899999999999999865 323222211 011111111 0 1111111 22589999997899999999
Q ss_pred HHHHhccc
Q psy16563 246 VELIHNLP 253 (259)
Q Consensus 246 ~~~l~~~~ 253 (259)
.+.+....
T Consensus 239 ~~~i~~~~ 246 (252)
T 4e22_A 239 LAYAQRIL 246 (252)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99997653
No 73
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.38 E-value=1.9e-11 Score=104.44 Aligned_cols=69 Identities=10% Similarity=0.117 Sum_probs=45.1
Q ss_pred CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHH-HHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL-LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~-~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
+|.+|||+||++++.+|+.+|++.+.++.. . .+... ....+... ..++||++++ ++++.++|.+++..+
T Consensus 200 ~d~vI~l~a~~ev~~~Rl~~R~g~s~e~~~-~---ri~~q~~~~~~~~~---AD~vIdn~~s-~eel~~~I~~~l~~l 269 (281)
T 2f6r_A 200 VHEVWTVVIPETEAVRRIVERDGLSEAAAQ-S---RLQSQMSGQQLVEQ---SNVVLSTLWE-SHVTQSQVEKAWNLL 269 (281)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHCCCHHHHH-H---HHHTSCCHHHHHHT---CSEEEECSSC-HHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHcCCCCHHHHH-H---HHHHcCChHhhHhh---CCEEEECCCC-HHHHHHHHHHHHHHH
Confidence 688999999999999999998644322210 0 00000 01111111 2478999985 999999999988764
No 74
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.38 E-value=1.3e-11 Score=100.23 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=41.9
Q ss_pred CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHh----hHHHHHHHHHhc
Q psy16563 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVH----ESSNDIVELIHN 251 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~e----ev~~~I~~~l~~ 251 (259)
.|.+|||++|++++.+|+.+|++.+.++. ...........+.|. . ..++||++++ ++ ++.++|.+++..
T Consensus 124 ~d~vi~l~~~~e~~~~Rl~~R~~~~~e~~--~~r~~~q~~~~~~~~-~---ad~vIdn~~~-~~~~~~~~~~~i~~~~~~ 196 (206)
T 1jjv_A 124 CDRILVVDVSPQTQLARSAQRDNNNFEQI--QRIMNSQVSQQERLK-W---ADDVINNDAE-LAQNLPHLQQKVLELHQF 196 (206)
T ss_dssp CSEEEEEECCHHHHHHHHC-----CHHHH--HHHHHHSCCHHHHHH-H---CSEEEECCSC-HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCCHHHH--HHHHHhcCChHHHHH-h---CCEEEECCCC-ccccHHHHHHHHHHHHHH
Confidence 57899999999999999999864332211 000000001122222 2 2389999995 99 999999988865
Q ss_pred c
Q psy16563 252 L 252 (259)
Q Consensus 252 ~ 252 (259)
+
T Consensus 197 ~ 197 (206)
T 1jjv_A 197 Y 197 (206)
T ss_dssp H
T ss_pred H
Confidence 4
No 75
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.36 E-value=1.1e-11 Score=97.65 Aligned_cols=73 Identities=18% Similarity=0.298 Sum_probs=38.5
Q ss_pred CCEEEEEecCHHHHHHHHhhccCC---chHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563 176 PDLVIYLTVSEAIRLQRLSRRKNF---TLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~R~~~---~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~ 251 (259)
.++++||++|++++.+|+.+|+.. ...+...+............|...+ .++||+++.++++++++|.+.+..
T Consensus 97 ~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~~~~a---~~~id~~~~~~~~~~~~i~~~l~~ 172 (173)
T 1kag_A 97 RGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIA---DVTIRTDDQSAKVVANQIIHMLES 172 (173)
T ss_dssp HSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHC---SEEC-----CHHHHHHHHHHHHC-
T ss_pred CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhC---CEEEECCCCCHHHHHHHHHHHHHh
Confidence 367999999999999999887421 1010001111222223334454433 499999965699999999988753
No 76
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.36 E-value=6.6e-12 Score=99.36 Aligned_cols=157 Identities=15% Similarity=0.075 Sum_probs=82.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccc-----c--ch------HHHHHHHHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAH-----D--SL------LRRAYYSLGNYIAAQDIK 125 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~-----~--~~------~~~~~~~~~~~~~~~~i~ 125 (259)
++|+|.|++||||||+++.|++.++..++.. ..+.+++..... . .+ .....+..........+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~---~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAF---GVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVV 80 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEE---EHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEe---ccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHH
Confidence 4699999999999999999999988654421 012222211100 0 00 000001000001112233
Q ss_pred HHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHH
Q psy16563 126 QDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEEN 204 (259)
Q Consensus 126 ~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~ 204 (259)
..+ .|..||+|-.+...... ...+..... ..+..+|||+||++++.+|+.+|+......
T Consensus 81 ~~~~~g~~vi~~~~~~~~~~~-----------------~~~~~~~~~--~~~~~~v~l~~~~e~l~~R~~~r~~~~~~~- 140 (178)
T 1qhx_A 81 AMARAGARIIIDDVFLGGAAA-----------------QERWRSFVG--DLDVLWVGVRCDGAVAEGRETARGDRVAGM- 140 (178)
T ss_dssp HHHHTTCEEEEEECCTTTHHH-----------------HHHHHHHHT--TCCEEEEEEECCHHHHHHHHHHTSSSCTTH-
T ss_pred HHHhcCCeEEEEeccccChHH-----------------HHHHHHHhc--CCcEEEEEEECCHHHHHHHHHhhCCcccch-
Confidence 333 56678887532211000 001111111 123468999999999999999987432110
Q ss_pred HHHHHHHHHHHHHHHHHhcC--CCCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563 205 ELKKNAKFRELLTTIYRNMN--NPELVFVDNSEKSVHESSNDIVELI 249 (259)
Q Consensus 205 ~~e~~~~~~~~~~~~y~~~~--~~~~~vID~s~~~~eev~~~I~~~l 249 (259)
. ...+.... ....++||+++.+++++++.|.+.+
T Consensus 141 ----~-------~~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 141 ----A-------AKQAYVVHEGVEYDVEVDTTHKESIECAWAIAAHV 176 (178)
T ss_dssp ----H-------HHHTTGGGTTCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred ----h-------hhhchhhccCCCCcEEEECCCCCHHHHHHHHHHHh
Confidence 0 01111111 1246899999977999999987654
No 77
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.33 E-value=6.4e-11 Score=95.84 Aligned_cols=71 Identities=17% Similarity=0.132 Sum_probs=46.8
Q ss_pred CCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhc-CCCC-eEEEeCCCCCHhhHHHHHHHHHh
Q psy16563 175 KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM-NNPE-LVFVDNSEKSVHESSNDIVELIH 250 (259)
Q Consensus 175 ~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~-~~~~-~~vID~s~~~~eev~~~I~~~l~ 250 (259)
.+|++|||+||++++.+|+.+|...+..+ .....+.....|.+. .... +++||+++.+++++.+.|.+.+.
T Consensus 135 ~~d~~i~l~a~~e~~~~R~~~r~~~~~~~-----~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 135 EAAHKFYLTASPEVRAWRRARERPQAYEE-----VLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp TCSEEEEEECCHHHHHHHHHHTSSSCHHH-----HHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCHHHHHHHHHhhcccCHHH-----HHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 37899999999999999999886533211 122222222223221 1223 59999998559999999998875
No 78
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.33 E-value=4.2e-11 Score=98.43 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=44.4
Q ss_pred CCCCEEEEEecCHHHHHHHHh----hccCCchHHHHHHHHHHHHHHHHHHH----HhcCC-CCeEEEeCCCCCHhhHHHH
Q psy16563 174 MKPDLVIYLTVSEAIRLQRLS----RRKNFTLEENELKKNAKFRELLTTIY----RNMNN-PELVFVDNSEKSVHESSND 244 (259)
Q Consensus 174 ~~pdlvI~L~a~~ev~~~Rl~----~R~~~~~~~~~~e~~~~~~~~~~~~y----~~~~~-~~~~vID~s~~~~eev~~~ 244 (259)
..+|++|||++|++++.+|+. .|+.....+.. ...+.++....| .++.. ...++||+++.+++++.++
T Consensus 139 ~~~d~~i~l~~~~e~~~~R~~~~l~~rg~~~~~~~~---~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~~~~~~ev~~~ 215 (227)
T 1cke_A 139 PDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERL---LAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEK 215 (227)
T ss_dssp TTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHH---HHHHC-------------CCCCTTCEEEETTTSCHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHhCCccCCHHHH---HHHHHHHHHhhhhhcccCccCCCCEEEEeCCCCCHHHHHHH
Confidence 347999999999999999943 44421111111 112223322222 22222 2358999996559999999
Q ss_pred HHHHHhcc
Q psy16563 245 IVELIHNL 252 (259)
Q Consensus 245 I~~~l~~~ 252 (259)
|.+.+...
T Consensus 216 I~~~l~~~ 223 (227)
T 1cke_A 216 ALQYARQK 223 (227)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988654
No 79
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.32 E-value=6.6e-11 Score=98.08 Aligned_cols=74 Identities=19% Similarity=0.256 Sum_probs=43.8
Q ss_pred CCEEEEEecCHHHHHHHHhhc----c-CCchHHHHHHHHHHHHHHHHHHHHhcC--CCC--eEEEeCCCCCHhhHHHHHH
Q psy16563 176 PDLVIYLTVSEAIRLQRLSRR----K-NFTLEENELKKNAKFRELLTTIYRNMN--NPE--LVFVDNSEKSVHESSNDIV 246 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~R----~-~~~~~~~~~e~~~~~~~~~~~~y~~~~--~~~--~~vID~s~~~~eev~~~I~ 246 (259)
.++.|||++|++++.+|..++ + ..+..+.. . ...-...... ...+. .+. -++||++..+++++.+.|.
T Consensus 146 a~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~-~-~i~~rD~~d~-~r~~~pl~~~~dal~IDTs~l~iee~v~~I~ 222 (233)
T 3r20_A 146 ADVKIFLTASAEERARRRNAQNVANGLPDDYATVL-A-DVQRRDHLDS-TRPVSPLRAADDALVVDTSDMDQAQVIAHLL 222 (233)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHH-H-HHHHHHHHHH-HSCSSCCSCCTTSEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHH-H-HHHHHHHhhh-hccccccccccCcEEEECCCCCHHHHHHHHH
Confidence 468999999999999998752 3 22222110 0 1111111111 11222 111 3999999988999999999
Q ss_pred HHHhcc
Q psy16563 247 ELIHNL 252 (259)
Q Consensus 247 ~~l~~~ 252 (259)
+.+...
T Consensus 223 ~~i~~~ 228 (233)
T 3r20_A 223 DLVTAQ 228 (233)
T ss_dssp HHC---
T ss_pred HHHHHh
Confidence 988764
No 80
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.31 E-value=7.9e-12 Score=103.14 Aligned_cols=76 Identities=12% Similarity=0.143 Sum_probs=50.8
Q ss_pred CEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhc-----CCC--CeEEEeCCCCCHhhHHHHHHHHH
Q psy16563 177 DLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM-----NNP--ELVFVDNSEKSVHESSNDIVELI 249 (259)
Q Consensus 177 dlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~-----~~~--~~~vID~s~~~~eev~~~I~~~l 249 (259)
.++|||++|++++.+|+.+|.+.+..+. .+......+.....|..+ ..+ ..++||++..+++++++.|.+.+
T Consensus 138 ~~~VfL~A~~e~r~~Ri~~~~~~~~~~a-~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i 216 (223)
T 3hdt_A 138 LIRIFVYTDKVKKVQRVMEVDCIDEERA-KRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYI 216 (223)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTCCHHHH-HHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHH
Confidence 4799999999999999988754332221 111122223334445532 122 25999999988999999999999
Q ss_pred hccc
Q psy16563 250 HNLP 253 (259)
Q Consensus 250 ~~~~ 253 (259)
+...
T Consensus 217 ~~~~ 220 (223)
T 3hdt_A 217 RLKG 220 (223)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 7653
No 81
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.31 E-value=5.3e-12 Score=102.64 Aligned_cols=76 Identities=12% Similarity=0.035 Sum_probs=47.0
Q ss_pred CCCEEEEEecCHHHHHHHHhhccCCchH-HHHHH-HHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 175 KPDLVIYLTVSEAIRLQRLSRRKNFTLE-ENELK-KNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 175 ~pdlvI~L~a~~ev~~~Rl~~R~~~~~~-~~~~e-~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
.+|.+|||++|++++.+|+..|+..... ...+. ..........+.+.+. ...+++||++.+ ++++.++|.+.+...
T Consensus 129 ~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~Id~~~~-~eev~~~I~~~l~~~ 206 (207)
T 2qt1_A 129 IWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYRQEMQDI-TWEVVYLDGTKS-EEDLFLQVYEDLIQE 206 (207)
T ss_dssp TCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHHHHHHHHGGGC-SSCCEEEETTSC-HHHHHHHHHHHHTTT
T ss_pred hcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHHHHHHHHHHhc-CCeEEEecCCCC-HHHHHHHHHHHHHhh
Confidence 4789999999999999999888622110 11111 0111111111222222 124678999987 999999999998753
No 82
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.30 E-value=2.1e-11 Score=98.29 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=45.6
Q ss_pred CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHH--HhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY--RNMNNPELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y--~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
+|.+|||++|++++.+|+..|+..+..+. ..........+ ...+ .++||++++ ++++.++|.+.+..+.
T Consensus 125 ~d~~i~l~~~~e~~~~R~~~R~~~~~~~~-----~~~i~~~~~~~~~~~~a---d~vId~~~~-~~~~~~~i~~~~~~~~ 195 (203)
T 1uf9_A 125 LHGTLLVAAPLEERVRRVMARSGLSREEV-----LARERAQMPEEEKRKRA---TWVLENTGS-LEDLERALKAVLAELT 195 (203)
T ss_dssp SSEEEEECCCHHHHHHHHHTTTCCTTHHH-----HHHHTTSCCHHHHHHHC---SEEECCSSH-HHHHHHHHHHHHHSCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCCHHHH-----HHHHHHCCChhHHHHhC---CEEEECCCC-HHHHHHHHHHHHHHHH
Confidence 68999999999999999999864332211 00110000111 1222 278999985 9999999999998654
No 83
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.30 E-value=6.9e-11 Score=95.30 Aligned_cols=31 Identities=26% Similarity=0.271 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
.++|+|+|++||||||+++.|++.+|..++.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 5679999999999999999999998887664
No 84
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.30 E-value=1e-10 Score=94.65 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=44.8
Q ss_pred CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHH-----HHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT-----IYRNMNNPELVFVDNSEKSVHESSNDIVELIH 250 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~-----~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~ 250 (259)
+|.+|||++|++++.+|+.+|+ .+.++ ..+++.. .|.+. ..++||++.+ ++++.++|.+.+.
T Consensus 124 ~~~~i~l~~~~e~~~~Rl~~R~-~~~~~--------~~~~~~~~~~~~~~~~~---ad~vId~~~~-~~~~~~~i~~~l~ 190 (204)
T 2if2_A 124 YDKLIVVYAPYEVCKERAIKRG-MSEED--------FERRWKKQMPIEEKVKY---ADYVIDNSGS-IEETYKQVKKVYE 190 (204)
T ss_dssp SSEEEEECCCHHHHHHHHHHTC-CCHHH--------HHHHHTTSCCHHHHGGG---CSEECCCSSC-HHHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHcC-CCHHH--------HHHHHHhCCChhHHHhc---CCEEEECCCC-HHHHHHHHHHHHH
Confidence 6889999999999999999984 32211 1111111 12221 2378999965 9999999999997
Q ss_pred cc
Q psy16563 251 NL 252 (259)
Q Consensus 251 ~~ 252 (259)
.+
T Consensus 191 ~~ 192 (204)
T 2if2_A 191 EL 192 (204)
T ss_dssp TT
T ss_pred HH
Confidence 65
No 85
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.27 E-value=5.3e-10 Score=93.27 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=26.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
+.+|+|.|++||||||+++.|++++|...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 456999999999999999999999986543
No 86
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.26 E-value=8.8e-11 Score=98.47 Aligned_cols=72 Identities=14% Similarity=0.232 Sum_probs=44.6
Q ss_pred CCEEEEEecCHHHHHHHHhhcc----CCchHHHHHHHHHHHHHHHHHHHHh----cCCCCeEEE----eCCCCCHhhHHH
Q psy16563 176 PDLVIYLTVSEAIRLQRLSRRK----NFTLEENELKKNAKFRELLTTIYRN----MNNPELVFV----DNSEKSVHESSN 243 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~~R~----~~~~~~~~~e~~~~~~~~~~~~y~~----~~~~~~~vI----D~s~~~~eev~~ 243 (259)
+|++|||++|++++++|+..|+ +.+.++. ...+..+....|.+ ......++| |++.+ ++++.+
T Consensus 151 ~d~vi~l~~~~e~~~~R~~~R~~~~rg~~~e~i----~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s-~e~v~~ 225 (252)
T 1uj2_A 151 FQMKLFVDTDADTRLSRRVLRDISERGRDLEQI----LSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVA-INLIVQ 225 (252)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHH----HHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHH-HHHHHH
T ss_pred cCeeEEEeCCHHHHHHHHHHHHHhhhCCCHHHH----HHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhH-HHHHHH
Confidence 5789999999999999998885 2222211 11122222222332 112233666 88555 999999
Q ss_pred HHHHHHhcc
Q psy16563 244 DIVELIHNL 252 (259)
Q Consensus 244 ~I~~~l~~~ 252 (259)
+|.+.+...
T Consensus 226 ~I~~~l~~~ 234 (252)
T 1uj2_A 226 HIQDILNGG 234 (252)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHccc
Confidence 999998754
No 87
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.26 E-value=1.4e-11 Score=100.05 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=41.7
Q ss_pred EEEEEe-cCHHHHHHHHhhccCCchHHHHHHHHHH-HHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 178 LVIYLT-VSEAIRLQRLSRRKNFTLEENELKKNAK-FRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 178 lvI~L~-a~~ev~~~Rl~~R~~~~~~~~~~e~~~~-~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
++|||+ +|++++.+|+.+|+..+..+ .+.... ..+.+...|.... + ++|+++ + +++++++|.++|...
T Consensus 128 ~~i~l~~~s~e~l~~Rl~~R~~~~~~~--i~~rl~~~~~~~~~~~~~~~--d-~vi~n~-~-~e~~~~~i~~~i~~~ 197 (204)
T 2qor_A 128 IYIFVKPPSIDILLGRLKNRNTEKPEE--INKRMQELTREMDEADKVGF--N-YFIVND-D-LARTYAELREYLLGS 197 (204)
T ss_dssp EEEEEECSCHHHHHHHHHTCTTSCHHH--HHHHHHHHHHHHHHHHHHTC--S-EEEECS-S-HHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHcCCCCHHH--HHHHHHHHHHHHHHhhhccC--c-EEEECc-C-HHHHHHHHHHHHHHH
Confidence 689998 99999999999998543221 111111 1111111133322 2 456665 4 999999999999764
No 88
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.24 E-value=9.2e-12 Score=116.55 Aligned_cols=166 Identities=13% Similarity=0.129 Sum_probs=88.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh---hcccccCCCCchHHHHHHhccccchH---HHHHHHHHHHHHHHHHHHHh-CC
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKL---KASLKSTPPSSIMSLREKFDAHDSLL---RRAYYSLGNYIAAQDIKQDL-QK 130 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~---~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~l-~~ 130 (259)
.++|+|+|++||||||+++.|++++ |..++... .+.++..+..+..+. ....+ ..+.+.....+ .|
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD---gD~iR~~L~~~~~fs~~dree~~----r~i~eva~~~l~~G 124 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD---GDNIRQGLNKNLGFSPEDREENV----RRIAEVAKLFADAG 124 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES---HHHHTTTTTTTCCSSHHHHHHHH----HHHHHHHHHHHHTT
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec---hHHhhhccCccccCChhhhHHHH----HHHHHHHHHHHhCC
Confidence 4569999999999999999999999 55443221 122332221111111 00111 01122223333 57
Q ss_pred CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHH
Q psy16563 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNA 210 (259)
Q Consensus 131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~ 210 (259)
.+|+.+ +.. .|.. ..+.+.........|+++|||++|++++.+|+.++. ..+ .+.. ..
T Consensus 125 ~iVI~d-~~s---~~~~--------------~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~l-y~~--aR~~-~~ 182 (630)
T 1x6v_B 125 LVCITS-FIS---PYTQ--------------DRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGL-YKK--ARAG-EI 182 (630)
T ss_dssp CEEEEE-CCC---CCHH--------------HHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSH-HHH--HTTC---
T ss_pred CEEEEe-Cch---hhHH--------------HHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhcccc-chh--hhhh-hH
Confidence 778877 321 1110 011222222223457899999999999999986421 000 0000 00
Q ss_pred HHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 211 KFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 211 ~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
..+..+...|+... .+.++||+++.++++++++|.+.|....
T Consensus 183 ~~~~~~~~~Ye~p~-~~dlvIDts~~s~eevv~~Il~~L~~~~ 224 (630)
T 1x6v_B 183 KGFTGIDSEYEKPE-APELVLKTDSCDVNDCVQQVVELLQERD 224 (630)
T ss_dssp --CBTTTBCCCCCS-SCSEEEETTSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhhcccC-CCcEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 01122223333221 2358999998679999999999997653
No 89
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.22 E-value=1.2e-09 Score=90.66 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=44.6
Q ss_pred CCEEEEEecCHHHHHHHH----hhcc-CCchHHHHHHHHHHHHHHHHHHHH----hcCCC-CeEEEeCCCCCHhhHHHHH
Q psy16563 176 PDLVIYLTVSEAIRLQRL----SRRK-NFTLEENELKKNAKFRELLTTIYR----NMNNP-ELVFVDNSEKSVHESSNDI 245 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl----~~R~-~~~~~~~~~e~~~~~~~~~~~~y~----~~~~~-~~~vID~s~~~~eev~~~I 245 (259)
.|++|||+||++++.+|+ ..|+ ..+..+. ...+.++...... +++.. ..++||+++.+++++.++|
T Consensus 153 ~d~vi~L~a~~e~~~~R~~~~~~~R~~~~~~e~~----~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~~~s~eev~~~I 228 (236)
T 1q3t_A 153 AELKIFLVASVDERAERRYKENIAKGIETDLETL----KKEIAARDYKDSHRETSPLKQAEDAVYLDTTGLNIQEVVEKI 228 (236)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHH----HHHHHHHHHHHTTCSSSCCSCCTTCEEEECSSCCHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHH----HHHHHHHhhhhhhcccccccccCCEEEEcCCCCCHHHHHHHH
Confidence 478999999999999997 4565 2222111 1111111111111 12222 3489999975599999999
Q ss_pred HHHHhc
Q psy16563 246 VELIHN 251 (259)
Q Consensus 246 ~~~l~~ 251 (259)
.+.+..
T Consensus 229 ~~~l~~ 234 (236)
T 1q3t_A 229 KAEAEK 234 (236)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998864
No 90
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.22 E-value=3.9e-11 Score=97.09 Aligned_cols=158 Identities=13% Similarity=0.013 Sum_probs=80.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcc-----cccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQP 132 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~-----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~ 132 (259)
.+|+|.|++||||||+++.|++.++.. ++. .+.++..+.....+........ ............ .+..
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d-----~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 99 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD-----GDNVRHGLNRDLSFKAEDRAEN-IRRVGEVAKLFADAGII 99 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-----HHHHTTTTTTTCCSSHHHHHHH-HHHHHHHHHHHHHTTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec-----CchhhhHhhcccCcChHHHHHH-HHHHHHHHHHHHhCCce
Confidence 459999999999999999999998532 221 1222221111111111111000 011111111222 4666
Q ss_pred EEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHH------hhccCCchHHHHH
Q psy16563 133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL------SRRKNFTLEENEL 206 (259)
Q Consensus 133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl------~~R~~~~~~~~~~ 206 (259)
++.+..... +.....+..... ..+.++|||++|++++.+|+ ..|.+......
T Consensus 100 vi~~~~~~~------------------~~~r~~~~~~~~--~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~~-- 157 (200)
T 3uie_A 100 CIASLISPY------------------RTDRDACRSLLP--EGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFT-- 157 (200)
T ss_dssp EEEECCCCC------------------HHHHHHHHHTSC--TTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSCB--
T ss_pred EEEecCCch------------------HHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCCC--
Confidence 665421110 011122222211 11345799999999999997 33322110000
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEeCCC-CCHhhHHHHHHHHHhccc
Q psy16563 207 KKNAKFRELLTTIYRNMNNPELVFVDNSE-KSVHESSNDIVELIHNLP 253 (259)
Q Consensus 207 e~~~~~~~~~~~~y~~~~~~~~~vID~s~-~~~eev~~~I~~~l~~~~ 253 (259)
.+...|++. ..+.++||+++ .++++++++|.+.|....
T Consensus 158 --------~~~~~~~~~-~~~~~~idt~~~~~~~e~v~~i~~~l~~~~ 196 (200)
T 3uie_A 158 --------GIDDPYEPP-LNCEISLGREGGTSPIEMAEKVVGYLDNKG 196 (200)
T ss_dssp --------TTTBCCCCC-SSCSEEECCSSCCCHHHHHHHHHHHHHHHT
T ss_pred --------CCCCcCcCC-CCCCEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence 011112221 12468999998 579999999999997653
No 91
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.22 E-value=1e-11 Score=98.57 Aligned_cols=73 Identities=12% Similarity=0.136 Sum_probs=43.4
Q ss_pred CCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 175 KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 175 ~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
.|+++|||+||++++.+|+.+|.- ..... . .......+...|++. ..+.++||+++.+++++.++|.+.+...
T Consensus 104 ~~~~~i~l~~~~e~~~~R~~~~~~--~~~~~-~-~~~~~~~~~~~~~~~-~~ad~vid~~~~~~~~~~~~i~~~l~~~ 176 (179)
T 2pez_A 104 LPFFEVFVDAPLHVCEQRDVKGLY--KKARA-G-EIKGFTGIDSEYEKP-EAPELVLKTDSCDVNDCVQQVVELLQER 176 (179)
T ss_dssp CCEEEEEEECCHHHHHHHCTTSHH--HHHHT-T-SSCSCBTTTBCCCCC-SSCSEEEETTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCHHHHHHHHhhhhH--HHHhc-c-cccccccCCccccCC-CCCcEEEECCCCCHHHHHHHHHHHHHHh
Confidence 588999999999999999876420 00000 0 000000011112111 1134788888756999999999998753
No 92
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.20 E-value=9.6e-11 Score=100.53 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=67.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh-hcccccCCCCchHHHHHHhccc-c----chHHHHHHHHHHHHHHHHHHHHh----
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKL-KASLKSTPPSSIMSLREKFDAH-D----SLLRRAYYSLGNYIAAQDIKQDL---- 128 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~-~~~~~~~p~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~i~~~l---- 128 (259)
.+|+|.|++||||||+++.|++.+ +..++.. +.+++.+... . .+....- ........+.+...+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~-----D~~r~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~ 76 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR-----DDYRQSIMAHEERDEYKYTKKKE-GIVTGMQFDTAKSILYGGD 76 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH-----HHHHHHHTTSCCCC---CCHHHH-HHHHHHHHHHHHHHTTSCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecc-----cHHHHHhccCCcccccccchhhh-hHHHHHHHHHHHHHHhhcc
Confidence 369999999999999999999975 6555532 3455443221 1 1110000 000112223344444
Q ss_pred CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC
Q psy16563 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN 198 (259)
Q Consensus 129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~ 198 (259)
.+..||+|.+..+... ...+..+......++.+|||++|++++.+|+.+|+.
T Consensus 77 ~g~~vi~d~~~~~~~~------------------~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 128 (301)
T 1ltq_A 77 SVKGVIISDTNLNPER------------------RLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT 128 (301)
T ss_dssp TCCEEEECSCCCCHHH------------------HHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG
T ss_pred CCCEEEEeCCCCCHHH------------------HHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC
Confidence 4778999976543210 111122222223356899999999999999999974
No 93
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=99.17 E-value=3.7e-11 Score=109.73 Aligned_cols=170 Identities=12% Similarity=0.080 Sum_probs=94.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhhccccc---CCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCC
Q psy16563 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS---TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQ 131 (259)
Q Consensus 56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~ 131 (259)
+...+|+|+|.+||||+|+++.|.+++...++. ...++..+.. .+.+ -+....+- .|.
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~-----~~yl-------------~R~~~~lP~~G~ 102 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELE-----RPPQ-------------WRFWRRLPPKGR 102 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHT-----SCTT-------------HHHHHHCCCTTC
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhcc-----CChh-------------hhHHHhCCCCCe
Confidence 345669999999999999999999999876432 1111111111 1111 11112221 699
Q ss_pred cEEEcCCccchhhhhhhhhhccccCCCCCc----chhhhhc---ccccCCCCCEEEEEecCHHHHHHHHhhccCC-ch--
Q psy16563 132 PVVMDRFWHSTSAYGMANELVKNSDLKLPD----EDDDIYS---WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TL-- 201 (259)
Q Consensus 132 ~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~----~~~~l~~---~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~-- 201 (259)
++|+||+|++.+.+.... | ..+ .+ .+.++.. .+.....|++++||++|++++.+|+..|... ..
T Consensus 103 IvIfdRSwYs~~~v~rv~--g-~~~---~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p~k~W 176 (500)
T 3czp_A 103 TGIFFGNWYSQMLYARVE--G-HIK---EAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDPQHSW 176 (500)
T ss_dssp EEEEESCHHHHHHHHHHT--T-SSC---HHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-----------
T ss_pred EEEEeCchhhHHHHHHHh--c-CCC---HHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCCcccC
Confidence 999999999987665321 1 111 11 1222222 2455677999999999999999999998631 11
Q ss_pred -H-HHHHHHHHHHHHHHHHHHHhc----C--CCCeEEEeCCCCC--HhhHHHHHHHHHh
Q psy16563 202 -E-ENELKKNAKFRELLTTIYRNM----N--NPELVFVDNSEKS--VHESSNDIVELIH 250 (259)
Q Consensus 202 -~-~~~~e~~~~~~~~~~~~y~~~----~--~~~~~vID~s~~~--~eev~~~I~~~l~ 250 (259)
. ..+.+ ..++......+|+.+ . ..+|++||++... ...+.+.|.+.|.
T Consensus 177 k~s~~D~~-~~~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~dk~~arl~v~~~il~~l~ 234 (500)
T 3czp_A 177 KLSPLDWK-QSEVYDRFVHYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQ 234 (500)
T ss_dssp --CSSCTT-SHHHHHHHHHHHHHHHHHHCBTTBCEEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHH-HHHhHHHHHHHHHHHHHhhcCCCCCEEEEECCCcchhHHHHHHHHHHHHH
Confidence 0 00111 122333333333332 2 3479999999731 3445555555554
No 94
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.14 E-value=4.1e-09 Score=86.00 Aligned_cols=72 Identities=21% Similarity=0.316 Sum_probs=44.0
Q ss_pred CCEEEEEecCHHHHHHHHh----hccCC-chHHHHHHHHHHHHHHH-HHHHH---hcCCC-CeEEEeCCCCCHhhHHHHH
Q psy16563 176 PDLVIYLTVSEAIRLQRLS----RRKNF-TLEENELKKNAKFRELL-TTIYR---NMNNP-ELVFVDNSEKSVHESSNDI 245 (259)
Q Consensus 176 pdlvI~L~a~~ev~~~Rl~----~R~~~-~~~~~~~e~~~~~~~~~-~~~y~---~~~~~-~~~vID~s~~~~eev~~~I 245 (259)
.+++|||+||++++.+|+. .|+.. +.++. ...+.++. .+... +++.. ..++||+++.+++++++.|
T Consensus 136 ~~~vi~l~a~~e~~~~R~~~~~~~r~~~~~~e~~----~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~~~ee~~~~I 211 (219)
T 2h92_A 136 ADLKVYMIASVEERAERRYKDNQLRGIESNFEDL----KRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEI 211 (219)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHH----HHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTCCHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhcCcccCHHHH----HHHHHHHHHhhhhhhccccccCCCeEEEECCCCCHHHHHHHH
Confidence 5789999999999999975 34421 21111 11111111 11111 22222 3499999986699999999
Q ss_pred HHHHhc
Q psy16563 246 VELIHN 251 (259)
Q Consensus 246 ~~~l~~ 251 (259)
.+.+..
T Consensus 212 ~~~l~~ 217 (219)
T 2h92_A 212 LAMVSQ 217 (219)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 998864
No 95
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.13 E-value=5.3e-11 Score=110.45 Aligned_cols=168 Identities=13% Similarity=0.079 Sum_probs=88.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEEcC
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDR 137 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~Dr 137 (259)
.+|+|+|++||||||+++.|++.++......+-.+.+.+++.+..+..+....... ....+...+...+ .|..||+|.
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~-~l~~i~~~~~~~l~~G~~VI~d~ 451 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRIT-NILRVGFVASEIVKHNGVVICAL 451 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHH-HHHHHHHHHHHHHHTTCEEEEEC
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHH-HHHHHHHHHHHHHhCCCEEEEEc
Confidence 45999999999999999999999885321111112345555543332221100000 0001122223333 578899983
Q ss_pred CccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCC-EEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHH
Q psy16563 138 FWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPD-LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL 216 (259)
Q Consensus 138 ~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pd-lvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~ 216 (259)
.. .|... ......++. .++ ++|||++|++++.+|+. |+.... +. .. ....+..+
T Consensus 452 ~~----~~~~~--------------r~~~~~~l~---~~d~~vV~L~~~~e~~~~Rl~-r~~~~~-~~-~~-~i~~~~~v 506 (546)
T 2gks_A 452 VS----PYRSA--------------RNQVRNMME---EGKFIEVFVDAPVEVCEERDV-KGLYKK-AK-EG-LIKGFTGV 506 (546)
T ss_dssp CC----CCHHH--------------HHHHHTTSC---TTCEEEEEEECCGGGHHHHCC-SSHHHH-C--------CCBTT
T ss_pred CC----CCHHH--------------HHHHHHHhh---cCCEEEEEEeCCHHHHHHHhh-cccccc-cc-HH-HHHHHHhh
Confidence 21 11110 111122221 256 89999999999999986 331100 00 00 00000011
Q ss_pred HHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 217 ~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
++.|.+. ..+.++||+++.++++++++|.+.|....
T Consensus 507 r~~~e~~-~~adivIDts~~s~eev~~~I~~~L~~~g 542 (546)
T 2gks_A 507 DDPYEPP-VAPEVRVDTTKLTPEESALKILEFLKKEG 542 (546)
T ss_dssp TBCCCCC-SSCSEEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred hhccccc-cCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 1112211 12369999986669999999999997643
No 96
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=99.06 E-value=1.7e-10 Score=105.45 Aligned_cols=171 Identities=15% Similarity=0.201 Sum_probs=101.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhhccccc---CCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh--CC
Q psy16563 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS---TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL--QK 130 (259)
Q Consensus 56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l--~~ 130 (259)
+...+|+|+|.+||||+|+++.|.+++...++. ...++..+.. .+.+ .+....+ .|
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~~-----~~yl--------------~R~~~~lP~~G 358 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEERA-----QPYL--------------WRFWRHIPARR 358 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHHT-----SCTT--------------HHHHTTCCCTT
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhhc-----chHH--------------HHHHHhCCCCC
Confidence 345679999999999999999999999876432 1111111110 1111 1112223 59
Q ss_pred CcEEEcCCccchhhhhhhhhhccccCCCCCcch----hhhhcc---cccCCCCCEEEEEecCHHHHHHHHhhccC-C---
Q psy16563 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDED----DDIYSW---PKDLMKPDLVIYLTVSEAIRLQRLSRRKN-F--- 199 (259)
Q Consensus 131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~----~~l~~~---~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~-~--- 199 (259)
.++|+||+|++.+.+.... | .. . ++.. .++..+ +.....|++++||++|++++.+|+..|.. .
T Consensus 359 ~i~IfDRswY~~~~v~rv~--g-~~--~-~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~ 432 (500)
T 3czp_A 359 QFTIFDRSWYGRVLVERIE--G-FC--A-PADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKR 432 (500)
T ss_dssp CEEEEESCGGGGGTHHHHH--T-SS--C-HHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTT
T ss_pred eEEEEeCcchhhHHHHHHh--c-CC--C-HHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCccc
Confidence 9999999999987665321 1 11 1 1211 222222 34456689999999999999999998852 1
Q ss_pred ---chHHH-HHHHHHHHHHHHHHHHHhcC--CCCeEEEeCCCCC--HhhHHHHHHHHHhc
Q psy16563 200 ---TLEEN-ELKKNAKFRELLTTIYRNMN--NPELVFVDNSEKS--VHESSNDIVELIHN 251 (259)
Q Consensus 200 ---~~~~~-~~e~~~~~~~~~~~~y~~~~--~~~~~vID~s~~~--~eev~~~I~~~l~~ 251 (259)
++.+. ..+...+|.+...+.+.... ..+|++|+++... .-.+.+.|.+.|..
T Consensus 433 Wk~s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~~ 492 (500)
T 3czp_A 433 YKITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEA 492 (500)
T ss_dssp SCCCSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHHH
Confidence 11111 11112345444444444443 3579999999831 34566666665544
No 97
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.06 E-value=6.5e-09 Score=88.88 Aligned_cols=117 Identities=11% Similarity=0.104 Sum_probs=61.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhh--cccccCC-----CCchHHHHHHhcccc-chHHHHHHHHHHHHHHHHHHHHh-
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLK--ASLKSTP-----PSSIMSLREKFDAHD-SLLRRAYYSLGNYIAAQDIKQDL- 128 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~--~~~~~~p-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l- 128 (259)
..+|+|.|++||||||+++.|++.++ ..+++.. -..+..+.+.+.... .... .++ .......+...+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~-~~~---~~~~~~~v~~~l~ 108 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVT-PYS---NRMTEAIISRLSD 108 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHH-HHH---HHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHHccchhhhhhh-HHH---HHHHHHHHHHHHh
Confidence 34699999999999999999999884 3333210 000111112222211 1100 000 011223344444
Q ss_pred CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHH----HHHHhhc
Q psy16563 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIR----LQRLSRR 196 (259)
Q Consensus 129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~----~~Rl~~R 196 (259)
.|..||+|..+..... ...+...+.....+..++++.+|++++ .+|+..|
T Consensus 109 ~g~~vIld~~~~~~~~------------------~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R 162 (287)
T 1gvn_B 109 QGYNLVIEGTGRTTDV------------------PIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM 162 (287)
T ss_dssp HTCCEEECCCCCCSHH------------------HHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCHHH------------------HHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence 5888999965543211 111111122222344579999999999 8887654
No 98
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.05 E-value=1.2e-10 Score=108.55 Aligned_cols=171 Identities=12% Similarity=0.030 Sum_probs=86.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhccc-ccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEE
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASL-KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVM 135 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~ 135 (259)
.++|+|+|++||||||+++.|++.++... ....-.+.+.++..+..+..+....- ..........+.... .|..||+
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er-~~~i~ri~~v~~~~~~~g~~VI~ 474 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDR-HTNIQRIAFVATELTRAGAAVIA 474 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHH-HHHHHHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHH-HHHHHHHHHHHHHHHhCCCEEEE
Confidence 34699999999999999999999988421 10000123445544433222211000 000011222333333 5778888
Q ss_pred cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Q psy16563 136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL 215 (259)
Q Consensus 136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~ 215 (259)
+-. +. |... ...+..+.... -++++|||++|++++.+|..+ +-. ...... ....+..
T Consensus 475 ~~i--s~--~~~~--------------R~~~r~l~~~~-g~~~~V~Lda~~ev~~~R~~r-~l~--~~~~~~-~i~~~~~ 531 (573)
T 1m8p_A 475 API--AP--YEES--------------RKFARDAVSQA-GSFFLVHVATPLEHCEQSDKR-GIY--AAARRG-EIKGFTG 531 (573)
T ss_dssp ECC--CC--CHHH--------------HHHHHHHHHTT-SEEEEEEECCCHHHHHHHCSS-CHH--HHHHTT-SSSSCBT
T ss_pred EcC--CC--cHHH--------------HHHHHHHHHhc-CCeEEEEEeCCHHHHHHHhcc-cch--hhhhHH-HHHHHHh
Confidence 721 11 1110 11111111111 145899999999999999532 100 000000 0000001
Q ss_pred HHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563 216 LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP 253 (259)
Q Consensus 216 ~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~ 253 (259)
..+.|... ..+.++||+++.++++++++|.+.|....
T Consensus 532 ~r~~~~~p-~~~dl~IDts~~s~eevv~~Il~~l~~~~ 568 (573)
T 1m8p_A 532 VDDPYETP-EKADLVVDFSKQSVRSIVHEIILVLESQG 568 (573)
T ss_dssp TTBCCCCC-SSCSEEECTTTSCHHHHHHHHHHHHHHTT
T ss_pred cccccccc-CCCCEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 11111111 12358999998779999999999997754
No 99
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.05 E-value=2.4e-10 Score=92.23 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=24.1
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+.+|.. |+|.||+||||||+++.|+..+.
T Consensus 4 m~~g~i--i~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 4 MNKANL--FIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp -CCCCE--EEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcE--EEEECcCCCCHHHHHHHHHhhCC
Confidence 344554 99999999999999999999864
No 100
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.93 E-value=3.5e-10 Score=91.35 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
+|+|.|++||||||+++.|++.+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 49999999999999999999987
No 101
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.92 E-value=2.2e-09 Score=85.87 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
|+|.||+||||||+++.|.+.+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC
Confidence 999999999999999999887653
No 102
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.91 E-value=3.9e-10 Score=91.81 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.+|+|.||+||||||+++.|++.+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 45999999999999999999998753
No 103
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.88 E-value=2.1e-08 Score=79.96 Aligned_cols=62 Identities=16% Similarity=0.092 Sum_probs=36.5
Q ss_pred EEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCC---CHhhHHHHHH
Q psy16563 178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEK---SVHESSNDIV 246 (259)
Q Consensus 178 lvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~---~~eev~~~I~ 246 (259)
.+++|++|++++.+|+..|......+. ..... .+ .+.++......+|+++.. ++++++++|.
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~~ld~--~~~~~-~~----~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDEQMGE--RCLEL-VE----EFESKGIDERYFYNTSHLQPTNLNDIVKNLK 168 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC----CG--GGGHH-HH----HHHHTTCCTTSEEECSSSCGGGHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHhccccccCCH--HHHHH-HH----HHhhcCCCccEEEeCCCCChhhHHHHHHHHh
Confidence 468999999999999998863211111 10111 22 233333334577888765 5777777776
No 104
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=98.87 E-value=1.2e-08 Score=85.98 Aligned_cols=174 Identities=14% Similarity=0.090 Sum_probs=98.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccC---CCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh--CCCc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKST---PPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL--QKQP 132 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l--~~~~ 132 (259)
..+|+|+|.+||||+++++.|.++++..++.. ..++-.+.. .+.+ .+....+ .|.+
T Consensus 75 ~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~eE~~-----~~yl--------------wR~~~~lP~~G~I 135 (289)
T 3rhf_A 75 RLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDEEKS-----HDFL--------------WRIEKQVPAAGMV 135 (289)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHHHHT-----SCTT--------------HHHHTTCCCTTCE
T ss_pred cEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChhhhc-----CCHH--------------HHHHHhCCCCCeE
Confidence 45699999999999999999999998775421 111111100 0001 1122333 5999
Q ss_pred EEEcCCccchhhhhhhhhhccccCCCCCcchh---hhhcccccCCCCCEEEEEecCHHHHHHHHhhccC-Cc------hH
Q psy16563 133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDD---DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN-FT------LE 202 (259)
Q Consensus 133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~---~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~-~~------~~ 202 (259)
+|+||+|++.....-.. |-..+......+. .+...+......-+.+||.+|.+++.+|+.+|.. .. +.
T Consensus 136 ~IFdRSwY~~vlverV~--g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~WK~s~~ 213 (289)
T 3rhf_A 136 GVFDRSQYEDVLIHRVH--GWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSKHWKYSRG 213 (289)
T ss_dssp EEEESCGGGGGTHHHHT--TSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGGGGGCCHH
T ss_pred EEEeCchhhhHhHHHHh--cCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccCCHH
Confidence 99999999876543211 1100000000111 1222233444566789999999999999998852 11 11
Q ss_pred HH-HHHHHHHHHHHHHHHHHhcC--CCCeEEEeCCCCC--HhhHHHHHHHHHhcc
Q psy16563 203 EN-ELKKNAKFRELLTTIYRNMN--NPELVFVDNSEKS--VHESSNDIVELIHNL 252 (259)
Q Consensus 203 ~~-~~e~~~~~~~~~~~~y~~~~--~~~~~vID~s~~~--~eev~~~I~~~l~~~ 252 (259)
+. +.+...+|.+...+.+.... ..||++|+++... --.+.+.|.+.|+.+
T Consensus 214 D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~arl~v~~~ll~~Le~~ 268 (289)
T 3rhf_A 214 DLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYARIAVQQLLLDALGGL 268 (289)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHHc
Confidence 11 11112333444444443332 3579999999851 123667777777665
No 105
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.85 E-value=3e-09 Score=84.84 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=44.8
Q ss_pred EEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 178 lvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
..+++.++.+++.+|+..|+.....+ ....+.+.+.+.++.....++||+++.++++++++|.+.+...
T Consensus 108 ~~ls~~~~~~v~~~R~~~r~~~~lld------~~~~~~~~~~~~~l~~~~~~~i~t~~~~~~~~~~~i~~~l~~~ 176 (191)
T 1zp6_A 108 HYIVLRTTAAEAIERCLDRGGDSLSD------PLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSAINALQSG 176 (191)
T ss_dssp EEEEEECCHHHHHHHHHTTCTTSCCC------HHHHHHHHHHTTCCGGGGGGEEECTTCCTTTTTTTTHHHHHHT
T ss_pred EEEEecCCHHHHHHHHHhcCCCccCC------HHHHHHHHHHHhccCcccccEEECCCCCHHHHHHHHHHHHHhh
Confidence 47899999999999999986421110 1122223333333322234678988766999999999988653
No 106
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.83 E-value=2.8e-09 Score=95.81 Aligned_cols=104 Identities=17% Similarity=0.084 Sum_probs=65.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcE
Q psy16563 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPV 133 (259)
Q Consensus 55 ~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~v 133 (259)
.+...+|+|.|++||||||+++.|++.++..++... .+ ..+ ......+...+ .+..|
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D-----~~-------~~~----------~~~~~~~~~~l~~g~~v 312 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRD-----TL-------GSW----------QRCVSSCQAALRQGKRV 312 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGG-----GS-------CSH----------HHHHHHHHHHHHTTCCE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccc-----hH-------HHH----------HHHHHHHHHHHhcCCcE
Confidence 334568999999999999999999999987776431 11 001 01122223333 67889
Q ss_pred EEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC
Q psy16563 134 VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN 198 (259)
Q Consensus 134 i~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~ 198 (259)
|+|......... ..+.........+..+|||++|.+++.+|+..|..
T Consensus 313 IiD~~~~~~~~r------------------~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 313 VIDNTNPDVPSR------------------ARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp EEESCCCSHHHH------------------HHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHH------------------HHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence 999654432111 11111111122345689999999999999999863
No 107
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.83 E-value=2.7e-09 Score=92.44 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+.+|+|.|++||||||+++.|+..++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 355799999999999999999999876
No 108
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.82 E-value=7.3e-09 Score=83.73 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+|+|.|++||||||+++.|+..+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34699999999999999999999874
No 109
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.82 E-value=1.6e-09 Score=86.59 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+|+|.||+||||||+++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 499999999999999999999875
No 110
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.82 E-value=2e-08 Score=84.07 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=24.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+.+|+|.|++||||||+++.|++.++.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~ 58 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQG 58 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 346999999999999999999999874
No 111
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.78 E-value=8.9e-08 Score=77.52 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=23.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+|+|.|++||||||+++.|+..++
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999999988
No 112
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.78 E-value=1.6e-07 Score=87.05 Aligned_cols=203 Identities=12% Similarity=0.041 Sum_probs=85.2
Q ss_pred ccccHHHHHHHHHhhc----cCChHHHHHHHH-HhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 10 QYPSLVSVLSILKSAQ----YSSLPEVEELLN-IYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 10 ~~~~~~~~~~~l~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+.-|-..+++.|..-. .-..+++..... .++ ....+|.. |+|.|++||||||+++.|+..++.
T Consensus 328 ~~isgt~ir~~Lr~G~~~p~~f~~peV~~vLR~~~~----------~~~~~G~i--I~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 328 LTLSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQTP----------PRERQGFT--VFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp ECCCHHHHHHHHTTTCCCCTTTSCHHHHHHHHHHSC----------CGGGSCEE--EEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHhcCCCCCccccccchhhhhhhhcc----------cccccceE--EEEECCCCChHHHHHHHHHHhhcc
Confidence 4446677888887611 111134433332 221 12444544 999999999999999999999873
Q ss_pred cc---ccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCC
Q psy16563 85 SL---KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLP 160 (259)
Q Consensus 85 ~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~ 160 (259)
.. +.. ...+.+++.......+....... ............. .+..++.........
T Consensus 396 ~~G~~i~~--lDgD~~~~~l~~~l~f~~~~r~~-~~r~i~~v~q~l~~~~~ivi~~~~~~~~~----------------- 455 (552)
T 3cr8_A 396 MGGRCVTL--LDGDIVRRHLSSELGFSKAHRDV-NVRRIGFVASEITKNRGIAICAPIAPYRQ----------------- 455 (552)
T ss_dssp TCSSCEEE--ESSHHHHHHTTSSCCCSHHHHHH-HHHHHHHHHHHHHHTTCEEEECCCCCCHH-----------------
T ss_pred cCCceEEE--ECCcHHHHhhccccCCCHHHHHH-HHHHHHHHHHHHHhcCCEEEEecCCccHH-----------------
Confidence 21 100 01223333221111111100000 0001111111122 455666543210000
Q ss_pred cchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCC--CCeEEEeCCCCCH
Q psy16563 161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNN--PELVFVDNSEKSV 238 (259)
Q Consensus 161 ~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~--~~~~vID~s~~~~ 238 (259)
.......++.... ..++|||++|.+++.+|.. |+-..... ...+..+......++. .+.++||++..++
T Consensus 456 -~r~~~r~lL~~~g-~f~~V~L~~~~e~~~~R~~-r~l~~~~~------~~~i~~l~~~r~~~e~P~~adl~Idt~~~s~ 526 (552)
T 3cr8_A 456 -TRRDVRAMIEAVG-GFVEIHVATPIETCESRDR-KGLYAKAR------AGLIPEFTGVSDPYEVPETPELAIDTTGLAI 526 (552)
T ss_dssp -HHHHHHHHHHTTS-EEEEEEECC------------------------------------CCCCCCSSCSEEECCSSCCH
T ss_pred -HHHHHHHHHHHcC-CEEEEEEcCCHHHHHHhcc-cccccccc------HhHHHHHHhccccccCCCCCCEEEECCCCCH
Confidence 0011111111111 2368999999999999974 33111000 0001111111122222 1358999998779
Q ss_pred hhHHHHHHHHHhccc
Q psy16563 239 HESSNDIVELIHNLP 253 (259)
Q Consensus 239 eev~~~I~~~l~~~~ 253 (259)
++++++|.+.|....
T Consensus 527 ~e~v~~Il~~L~~~~ 541 (552)
T 3cr8_A 527 DEAVQQILLKLEHEG 541 (552)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999997643
No 113
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.77 E-value=4e-09 Score=87.02 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=19.8
Q ss_pred CCCCcccCCCCCeEEEEcCCCCcHHHHHHHHH-HHhh
Q psy16563 48 QDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVA-KKLK 83 (259)
Q Consensus 48 ~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~-~~~~ 83 (259)
+.|....+|.. |+|.||+||||||+++.|+ ..+.
T Consensus 19 ~~sl~v~~G~i--i~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 19 PGSMLKSVGVI--LVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ---CCEECCCE--EEEECSCC----CHHHHHHC----
T ss_pred CCCcccCCCCE--EEEECCCCCCHHHHHHHHHhcCCC
Confidence 34455666665 9999999999999999999 7763
No 114
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.72 E-value=7.7e-08 Score=82.93 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+|+|.|++||||||+++.|+..++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34699999999999999999999876
No 115
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.71 E-value=1.1e-07 Score=79.15 Aligned_cols=39 Identities=18% Similarity=0.084 Sum_probs=26.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
.+++.|....+|. +|+|.|++||||||+++.|+..+|..
T Consensus 14 ~l~~isl~i~~g~--iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 14 GTENLYFQSMRPF--LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp ---------CCSE--EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred eecceeccCCCCE--EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 4455555566554 49999999999999999999988754
No 116
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.66 E-value=1.7e-08 Score=86.42 Aligned_cols=26 Identities=27% Similarity=0.508 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.++|+|+|++||||||+++.|++.++
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45799999999999999999999888
No 117
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.60 E-value=2.1e-07 Score=73.65 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+|+|.||+||||||+++.|+..+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 499999999999999999999764
No 118
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.60 E-value=4.8e-07 Score=83.46 Aligned_cols=31 Identities=26% Similarity=0.247 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
...+|++.|++||||||+++.|++.++..++
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~ 64 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGV 64 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 3457999999999999999999999986654
No 119
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.55 E-value=1.5e-07 Score=78.79 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=26.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
++|+|.|++||||||+++.|++.++..++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~ 31 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVA 31 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEe
Confidence 369999999999999999999999876654
No 120
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.53 E-value=1.2e-07 Score=76.85 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=23.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+|+|.|++||||||+++.|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3599999999999999999999987
No 121
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.43 E-value=1.4e-06 Score=71.29 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=24.0
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+|.. ++|.||+||||||+++.|+..+.
T Consensus 13 ~~~G~i--i~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTL--YIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCE--EEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcE--EEEECCCCCCHHHHHHHHhccCC
Confidence 445555 99999999999999999999875
No 122
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.31 E-value=4.4e-07 Score=78.81 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
.++|+|.||+||||||++..||+.++..+++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs 70 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVIN 70 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEc
Confidence 3479999999999999999999999976543
No 123
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.28 E-value=1.7e-06 Score=69.53 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++|.||+||||||+++.|...+.
T Consensus 7 i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHhhCc
Confidence 99999999999999999998764
No 124
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.19 E-value=1.3e-05 Score=73.01 Aligned_cols=42 Identities=26% Similarity=0.245 Sum_probs=30.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLRE 99 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~ 99 (259)
..+|+|.|.+||||||+++.|++.++..++....-..+.++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~ 80 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRR 80 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhh
Confidence 346999999999999999999999986655433323333443
No 125
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.98 E-value=2.5e-05 Score=61.07 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=21.0
Q ss_pred cccCCCCCeEEEEcCCCCcHHHHHHHH
Q psy16563 52 VGDDRKYPLIVFEGLDGCGKSHTSQTV 78 (259)
Q Consensus 52 ~~~~~~~~ii~~~g~~g~gkst~~~~l 78 (259)
...+|.. ++|.|++||||||+++.+
T Consensus 5 ~i~~gei--~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 5 TIPELSL--VVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEESSEE--EEEECCTTSCHHHHHHHH
T ss_pred cCCCCEE--EEEECCCCCCHHHHHHHH
Confidence 4556655 999999999999999974
No 126
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.96 E-value=4.3e-06 Score=68.23 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=24.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|..+.+|.. ++|.||+||||||+++.|+..+
T Consensus 12 ~l~~isl~i~~G~~--~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRGSMNNIYP--LVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------CCCC--EEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCceecCCCCE--EEEECCCCCCHHHHHHHHHhhC
Confidence 34556667888877 9999999999999999999977
No 127
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.83 E-value=6.3e-05 Score=60.47 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+|+|+|.+||||+|+++.|.+.++
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~g 36 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRLG 36 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CEEEEEECCCCCChHHHHHHHHHHcC
Confidence 45799999999999999999999886
No 128
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.70 E-value=2.4e-05 Score=61.83 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=23.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.++|.|++||||||+++.|+..++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999998863
No 129
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.69 E-value=7.6e-06 Score=67.66 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=31.3
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++.|..+.+|.+ ++|.||+||||||+++.|+..+.
T Consensus 20 ~L~~isl~i~~Ge~--~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 20 ALKNVNLNIKEGEF--VSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEEEEEECTTCE--EEEECSTTSSHHHHHHHHTTSSC
T ss_pred eEEeeeEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCC
Confidence 56667778888887 99999999999999999987543
No 130
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.69 E-value=6.9e-06 Score=69.53 Aligned_cols=44 Identities=23% Similarity=0.077 Sum_probs=34.4
Q ss_pred HhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 38 IYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.|++...++++.|..+.+|.+ ++|.||+||||||+++.|+..+.
T Consensus 16 ~y~~~~~~L~~isl~i~~Ge~--~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 16 NYSDGTHALKGINMNIKRGEV--TAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp ECTTSCEEEEEEEEEEETTSE--EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EECCCCeEEEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHcCCC
Confidence 343333356677778888887 99999999999999999987653
No 131
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.67 E-value=2.5e-05 Score=62.79 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=24.8
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+|++ |+|.||+||||||+++.|.+.+.
T Consensus 16 ~~~g~~--ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKT--LVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCE--EEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCE--EEEECcCCCCHHHHHHHHHhhCC
Confidence 445554 99999999999999999999875
No 132
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.63 E-value=2.6e-05 Score=67.40 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=26.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
++|+|.||+||||||++..|++.++..+++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis 35 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELIS 35 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEe
Confidence 469999999999999999999999876543
No 133
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.62 E-value=6.2e-06 Score=70.81 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=31.3
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
++++.+..+.+|.. ++|.||+||||||+++.|+..+...
T Consensus 115 vL~~vsl~i~~Ge~--vaIvGpsGsGKSTLl~lL~gl~~G~ 153 (305)
T 2v9p_A 115 ALKLWLKGIPKKNC--LAFIGPPNTGKSMLCNSLIHFLGGS 153 (305)
T ss_dssp HHHHHHHTCTTCSE--EEEECSSSSSHHHHHHHHHHHHTCE
T ss_pred hhccceEEecCCCE--EEEECCCCCcHHHHHHHHhhhcCce
Confidence 34444556777777 9999999999999999999987443
No 134
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.62 E-value=2.9e-05 Score=62.56 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=24.4
Q ss_pred cccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+.+|.. ++|.||+||||||+++.|+..+.
T Consensus 16 ~i~~Gei--~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRV--VVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCE--EEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCE--EEEECCCCCCHHHHHHHHHhhCC
Confidence 4666666 99999999999999999999874
No 135
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.62 E-value=1e-05 Score=66.41 Aligned_cols=37 Identities=16% Similarity=0.044 Sum_probs=30.7
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 19 ~l~~vsl~i~~Ge~--~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 19 ILKGISLSVKKGEF--VSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEEEEEETTCE--EEEEECTTSCHHHHHHHHTTSSC
T ss_pred eEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 45566677888887 99999999999999999987543
No 136
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.60 E-value=1.3e-05 Score=66.24 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=31.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 20 vl~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 20 TLNGITFSIPEGAL--VAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp SEEEEEEEECTTCE--EEEECSTTSSHHHHHHHHTTCSE
T ss_pred eeeeeEEEECCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 45566677888887 99999999999999999988653
No 137
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.59 E-value=1.5e-05 Score=66.73 Aligned_cols=37 Identities=24% Similarity=0.195 Sum_probs=31.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 22 vl~~vsl~i~~Ge~--~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 22 ALDGVSISVNKGDV--TLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECCEEETTCE--EEEECSTTSSHHHHHHHHTTSSC
T ss_pred eEeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 56667778888887 99999999999999999987653
No 138
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.59 E-value=2.5e-05 Score=60.48 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=25.9
Q ss_pred cccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
...+|.. ++|.|++||||||+++.|+..++
T Consensus 29 ~i~~Ge~--v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 29 HTEKAIM--VYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEE--EEEECSTTSSHHHHHHHHHHHTT
T ss_pred ccCCCCE--EEEECCCCCCHHHHHHHHHHhCC
Confidence 3566665 99999999999999999999883
No 139
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.58 E-value=1.2e-05 Score=67.71 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=32.0
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.++++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 25 ~vL~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 25 ALINDVSLHIASGEM--VAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEEEEEEEETTCE--EEEECCTTSCHHHHHHHHTSSSC
T ss_pred eEEEeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCC
Confidence 356667778888887 99999999999999999987653
No 140
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.58 E-value=3.5e-05 Score=67.01 Aligned_cols=29 Identities=38% Similarity=0.445 Sum_probs=25.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
++|+|.||+||||||++..|++.++..++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~ii 36 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEII 36 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEE
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCcee
Confidence 36999999999999999999999986543
No 141
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.58 E-value=1.4e-05 Score=65.05 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=30.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
++++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 24 il~~vsl~i~~Ge~--~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 24 VLERITMTIEKGNV--VNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEEEEEEEETTCC--EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCC
Confidence 45566677888887 9999999999999999998754
No 142
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.57 E-value=4.3e-05 Score=65.12 Aligned_cols=27 Identities=37% Similarity=0.487 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
..+|+|.|++||||||+++.|++.++.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 456999999999999999999999874
No 143
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.57 E-value=1.4e-05 Score=67.18 Aligned_cols=37 Identities=22% Similarity=0.069 Sum_probs=31.3
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 21 vl~~vsl~i~~Ge~--~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 21 VLKGVSLQARAGDV--ISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 55666777888887 99999999999999999987654
No 144
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.55 E-value=1.8e-05 Score=66.01 Aligned_cols=35 Identities=20% Similarity=0.148 Sum_probs=30.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
++++.|..+.+|.. ++|.|++||||||+++.|+..
T Consensus 18 vl~~vsl~i~~Ge~--~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 18 ILKGVNLVVPKGEV--HALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEEEEEETTCE--EEEECSTTSSHHHHHHHHHTC
T ss_pred EEeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCC
Confidence 45566677888887 999999999999999999985
No 145
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.55 E-value=1.9e-05 Score=69.24 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=31.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.+ ++|.||+||||||+.+.|+..+.
T Consensus 19 ~L~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 19 VLNDISLSLDPGEI--LFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEEEEECTTCE--EEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEeeEEEEcCCCE--EEEECCCCchHHHHHHHHhcCCC
Confidence 45666777888887 99999999999999999998643
No 146
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.54 E-value=1.3e-05 Score=68.89 Aligned_cols=74 Identities=18% Similarity=0.134 Sum_probs=50.6
Q ss_pred ccccccHHHHHHHHHhhcc-C------------ChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHH
Q psy16563 8 FAQYPSLVSVLSILKSAQY-S------------SLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHT 74 (259)
Q Consensus 8 ~~~~~~~~~~~~~l~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~ 74 (259)
...+.+.+.+..+++.+.. . ..-+++++...|+....++++.|..+.+|.. ++|.|++||||||+
T Consensus 19 ~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~--vaivG~sGsGKSTL 96 (306)
T 3nh6_A 19 SHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQT--LALVGPSGAGKSTI 96 (306)
T ss_dssp CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTCE--EEEESSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCCE--EEEECCCCchHHHH
Confidence 3456777888888876211 0 0012333444554434467777778888887 99999999999999
Q ss_pred HHHHHHHhh
Q psy16563 75 SQTVAKKLK 83 (259)
Q Consensus 75 ~~~l~~~~~ 83 (259)
++.|+..+.
T Consensus 97 l~ll~gl~~ 105 (306)
T 3nh6_A 97 LRLLFRFYD 105 (306)
T ss_dssp HHHHTTSSC
T ss_pred HHHHHcCCC
Confidence 999988654
No 147
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.54 E-value=1.6e-05 Score=66.82 Aligned_cols=37 Identities=16% Similarity=0.039 Sum_probs=31.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 39 vL~~vsl~i~~Gei--~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 39 VLKGINVHIREGEV--VVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEeeEEEEcCCCE--EEEEcCCCCcHHHHHHHHHcCCC
Confidence 56667777888887 99999999999999999987653
No 148
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.54 E-value=1.5e-05 Score=66.37 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=31.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 24 vl~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 24 ILDNINLSIKQGEV--IGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEEEEEEETTCE--EEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 55666777888887 99999999999999999987653
No 149
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.54 E-value=1.5e-05 Score=66.03 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=30.8
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 21 vl~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 21 AIKGIDLKVPRGQI--VTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEEEEEEETTCE--EEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 45566677888887 99999999999999999987643
No 150
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.54 E-value=0.00016 Score=66.28 Aligned_cols=63 Identities=16% Similarity=0.068 Sum_probs=44.1
Q ss_pred ccccHHHHHHHHHh----hccCChHHHHHHH-HHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 10 QYPSLVSVLSILKS----AQYSSLPEVEELL-NIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 10 ~~~~~~~~~~~l~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+.-|--.+++.|.. |..-..|++..+. ..++.. .+. .++|+|+|++||||||+++.|++.|+.
T Consensus 354 ~~iSgt~IR~~Lr~G~~~P~~f~rpeV~~vLr~~~~~~----------~~~--~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 354 LNISGTELRRRLRVGGEIPEWFSYPEVVKILRESNPPR----------PKQ--GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp BCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHHHHSCCG----------GGC--CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccCHHHHHHHHhCCCCCCccccChhhHHHHHHhcccc----------ccc--ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 66677888999988 2233345554444 444211 222 346999999999999999999999985
No 151
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.53 E-value=1.7e-05 Score=65.30 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=31.0
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++.|..+.+|.. ++|.|++||||||+.+.|+..+.
T Consensus 23 il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 23 VLKDINFKIERGQL--LAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp SEEEEEEEEETTCE--EEEECCTTSSHHHHHHHHTTSSC
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCc
Confidence 45556677888887 99999999999999999988654
No 152
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.53 E-value=2.1e-05 Score=66.27 Aligned_cols=35 Identities=26% Similarity=0.119 Sum_probs=30.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
++++.|..+.+|.. ++|.|++||||||+++.|+..
T Consensus 35 vl~~vsl~i~~Ge~--~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 35 ILRGLSLDVHPGEV--HAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCC
Confidence 56666777888887 999999999999999999885
No 153
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.53 E-value=1.9e-05 Score=66.69 Aligned_cols=37 Identities=16% Similarity=0.077 Sum_probs=31.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 34 vl~~vsl~i~~Ge~--~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 34 VLQGLTFTLYPGKV--TALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CEEEEEEEECTTCE--EEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeEeeEEEECCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 55666777888887 99999999999999999987653
No 154
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.52 E-value=5.2e-05 Score=59.50 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=24.0
Q ss_pred cCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+|.. ++|.||+||||||+++.++..+.
T Consensus 36 ~~g~~--~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 36 EEGKG--LTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GGCCE--EEECCSSSSSHHHHHHHHHHHHH
T ss_pred cCCCE--EEEECCCCCCHHHHHHHHHHHHH
Confidence 33444 99999999999999999999874
No 155
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.52 E-value=1.6e-05 Score=65.97 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=30.8
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 17 vl~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 17 ILRDISFEAQPNSI--IAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp SEEEEEEEECTTEE--EEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEEeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 45556677888877 99999999999999999987653
No 156
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.52 E-value=5.5e-05 Score=64.84 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=26.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
.++|+|.||+||||||++..|++.++..++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~ii 39 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELI 39 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEE
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEE
Confidence 457999999999999999999999986543
No 157
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.51 E-value=1.9e-05 Score=66.16 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=31.0
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 30 vl~~vsl~i~~Gei--~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 30 ILKGISFEIEEGEI--FGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 55666677888887 99999999999999999987643
No 158
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.51 E-value=2e-05 Score=66.06 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=30.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
++++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 35 vl~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 35 TLKSINFFIPSGTT--CALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp SEEEEEEEECTTCE--EEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEeeEEEECCCCE--EEEECCCCCCHHHHHHHHhccC
Confidence 55666677888887 9999999999999999998754
No 159
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.49 E-value=2e-05 Score=65.65 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=29.1
Q ss_pred CCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 46 NDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 46 ~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
+++.|....+|.. ++|.|++||||||+++.|+..+
T Consensus 16 l~~vsl~i~~Ge~--~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 16 LGPLSGEVRAGEI--LHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEEEEEETTCE--EEEECCTTSSHHHHHHHHTTSS
T ss_pred EeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhCCC
Confidence 4445567788877 9999999999999999998765
No 160
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.49 E-value=2.5e-05 Score=68.98 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=31.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.+ ++|.||+||||||+++.|+..+.
T Consensus 18 ~L~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 18 VSKDINLDIHEGEF--VVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEeeeEEEECCCCE--EEEEcCCCchHHHHHHHHHcCCC
Confidence 45666777888887 99999999999999999998653
No 161
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.48 E-value=4.4e-05 Score=65.52 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=25.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASL 86 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~ 86 (259)
++|+|.||+||||||++..|++.++..+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~i 31 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEV 31 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEE
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccce
Confidence 4699999999999999999999998653
No 162
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.48 E-value=2e-05 Score=66.77 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=31.5
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 36 vL~~isl~i~~Ge~--~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 36 ILKKISWQIAKGDK--WILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEEEEEEETTCE--EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEeeeEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCC
Confidence 56667777888887 99999999999999999987653
No 163
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.47 E-value=2.3e-05 Score=65.95 Aligned_cols=36 Identities=28% Similarity=0.281 Sum_probs=30.4
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
++++.|..+.+|.. ++|.|++||||||+++.|+..+
T Consensus 22 vl~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 22 ALENVSLVINEGEC--LLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEEEEEECTTCE--EEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhCCC
Confidence 45566677888887 9999999999999999998754
No 164
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.46 E-value=2.8e-05 Score=68.07 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=31.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++.|..+.+|.+ ++|.||+||||||+.+.|+..+.
T Consensus 30 vl~~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 30 SVRGVSFQIREGEM--VGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEEEEEETTCE--EEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEeeeEEEECCCCE--EEEECCCCCcHHHHHHHHhCCCC
Confidence 45566677888887 99999999999999999998653
No 165
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.45 E-value=2.3e-05 Score=65.47 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++.|..+.+|.. ++|.|++||||||+.+.|+..+.
T Consensus 20 vl~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 20 LFQQLNFDLNKGDI--LAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEEEEEEETTCE--EEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEEEEEECCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 45556667888887 99999999999999999988653
No 166
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.45 E-value=0.00022 Score=61.10 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=25.1
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
..+|. +|+|.|++||||||+++.|+..+..
T Consensus 97 ~~~g~--vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 97 FRKPA--VIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SSSCE--EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCc--EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 44444 5999999999999999999998753
No 167
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.45 E-value=3.1e-05 Score=67.97 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=31.0
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|....+|.+ ++|.||+||||||+.+.|+..+.
T Consensus 18 vl~~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 18 AVDGVSFEVKDGEF--VALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEEEEEECTTCE--EEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEeeeEEEEcCCCE--EEEEcCCCchHHHHHHHHHCCCC
Confidence 45556677888887 99999999999999999998653
No 168
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.44 E-value=3.2e-05 Score=67.93 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|....+|.+ ++|.||+||||||+.+.|+..+.
T Consensus 18 vl~~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 18 ALNNINLKIKDGEF--MALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEeeEEEECCCCE--EEEECCCCchHHHHHHHHhcCCC
Confidence 45556677888887 99999999999999999998653
No 169
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.43 E-value=6.9e-05 Score=64.54 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+|+|.|++||||||+++.|+..+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 3599999999999999999999875
No 170
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.42 E-value=3.4e-05 Score=68.02 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=31.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.+ ++|.||+||||||+.+.|+..+.
T Consensus 26 vl~~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 26 AVNKLNLTIKDGEF--LVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEeeeEEEECCCCE--EEEECCCCChHHHHHHHHHcCCC
Confidence 45566677888887 99999999999999999998653
No 171
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.42 E-value=3.4e-05 Score=67.73 Aligned_cols=37 Identities=19% Similarity=0.036 Sum_probs=31.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.+ ++|.|++||||||+++.|+..+.
T Consensus 43 aL~~vsl~i~~Gei--~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 43 ALNNVSLHVPAGQI--YGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEeeEEEEcCCCE--EEEEcCCCchHHHHHHHHhcCCC
Confidence 56677788888887 99999999999999999987543
No 172
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.42 E-value=3.7e-05 Score=68.23 Aligned_cols=38 Identities=18% Similarity=0.086 Sum_probs=32.2
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+++.|..+.+|.+ ++|.||+||||||+++.|+..+.
T Consensus 35 ~~L~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 35 AILENISFSISPGQR--VGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp CSEEEEEEEECTTCE--EEEEESTTSSHHHHHHHHHTCSE
T ss_pred EEeeceeEEEcCCCE--EEEECCCCChHHHHHHHHhCCCC
Confidence 456667778888888 99999999999999999997543
No 173
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.41 E-value=7.8e-05 Score=61.77 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=43.9
Q ss_pred CCCEEEEEecCHHHHHHHHhhccC----CchHHHHHHHHHHHHHHHHH-HHHh-c-CCCCeEEEeCCCCCHhhHHHHHHH
Q psy16563 175 KPDLVIYLTVSEAIRLQRLSRRKN----FTLEENELKKNAKFRELLTT-IYRN-M-NNPELVFVDNSEKSVHESSNDIVE 247 (259)
Q Consensus 175 ~pdlvI~L~a~~ev~~~Rl~~R~~----~~~~~~~~e~~~~~~~~~~~-~y~~-~-~~~~~~vID~s~~~~eev~~~I~~ 247 (259)
..|.+|.++|++++.++|+++|+. ...... .++.. .-+. . .....++|||+++ +++..++|.+
T Consensus 167 ~~d~VvVvdv~~~~qieRl~~rg~~~v~i~~~~~---------~~i~~Q~se~~~k~~~AD~VI~N~gs-le~l~~qV~~ 236 (241)
T 1dek_A 167 GYDYYIVPDTRQDHEMDAARAMGATVIHVVRPGQ---------KSNDTHITEAGLPIRDGDLVITNDGS-LEELFSKIKN 236 (241)
T ss_dssp SCSEEEECCCCSHHHHHHHHHTTCEEEEEECTTC---------CCSCCSGGGSCCCCCTTCEEEECCSC-HHHHHHHHHH
T ss_pred cCCEEEEEcCCcHHHHHHHHHCCCceEEEECccc---------chhhcCCCcccccccCCCEEEECCCC-HHHHHHHHHH
Confidence 358899999999999999999964 111100 00000 0001 1 1224689999987 9999999998
Q ss_pred HHhc
Q psy16563 248 LIHN 251 (259)
Q Consensus 248 ~l~~ 251 (259)
+++.
T Consensus 237 ll~~ 240 (241)
T 1dek_A 237 TLKV 240 (241)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 8864
No 174
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.40 E-value=3e-05 Score=67.78 Aligned_cols=37 Identities=24% Similarity=0.190 Sum_probs=30.8
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.+ ++|.||+||||||+++.|+..+.
T Consensus 15 ~l~~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 15 SLDNLSLKVESGEY--FVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEEEEEECTTCE--EEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEeeeEEEEcCCCE--EEEECCCCccHHHHHHHHHcCCC
Confidence 45556677888887 99999999999999999997643
No 175
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.39 E-value=5.8e-05 Score=63.74 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=24.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
++|.||+||||||+++.|+..++..++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i 73 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFI 73 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence 999999999999999999999876544
No 176
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.39 E-value=3.7e-05 Score=67.82 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.+ ++|.||+||||||+.+.|+..+.
T Consensus 18 vl~~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 18 AVREMSLEVKDGEF--MILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEEEEEEETTCE--EEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEeeeEEEEcCCCE--EEEECCCCcHHHHHHHHHHcCCC
Confidence 45556677888887 99999999999999999998643
No 177
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.39 E-value=3.6e-05 Score=65.60 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=31.5
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.++++.|..+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 52 ~vl~~isl~i~~Ge~--~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 52 PVLKDINFKIERGQL--LAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp CSEEEEEEEECTTCE--EEEEESTTSSHHHHHHHHTTSSC
T ss_pred eEEEeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCC
Confidence 355666677888877 99999999999999999988654
No 178
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.38 E-value=4.1e-05 Score=63.47 Aligned_cols=35 Identities=26% Similarity=0.177 Sum_probs=27.4
Q ss_pred CCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 46 NDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 46 ~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+++.|....+ .. ++|.|++||||||+++.|+..+.
T Consensus 15 l~~isl~i~~-e~--~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 15 RLNVDFEMGR-DY--CVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEEEEEECS-SE--EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EeeeEEEECC-EE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 3444555665 55 99999999999999999998653
No 179
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.38 E-value=2.8e-05 Score=68.14 Aligned_cols=37 Identities=16% Similarity=0.055 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|..+.+|.+ ++|.||+||||||+.+.|+..+.
T Consensus 20 vl~~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 20 ALDNVNINIENGER--FGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEEEEEECTTCE--EEEECSCHHHHHHHHHHHHTSSC
T ss_pred eEeceEEEECCCCE--EEEECCCCCcHHHHHHHHhCCCC
Confidence 45566677888887 99999999999999999998643
No 180
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.36 E-value=0.00037 Score=56.18 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=42.8
Q ss_pred cHHHHHHHHHhhccCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 13 SLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
+...+.+.|+=+..+...-+..+..-..+. .+.+. |+|.||+|+||||+|..|++.+....+
T Consensus 26 ~w~~I~~~l~yq~~~~~~f~~~l~~~~~~i-----------Pkkn~--ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 26 DWRPIVQFLRYQQIEFITFLGALKSFLKGT-----------PKKNC--LVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CSHHHHHHHHHTTCCHHHHHHHHHHHHHTC-----------TTCSE--EEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred CHHHHHHHHHHcCcCHHHHHHHHHHHHhcC-----------CcccE--EEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 556777777776666555555554444321 11223 999999999999999999999876544
No 181
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.36 E-value=0.00023 Score=64.81 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=26.9
Q ss_pred CCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 49 DSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 49 ~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.+....+|. +|+|.|++||||||+++.|+..+..
T Consensus 286 Isl~i~~Ge--VI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 286 LNVEGKAPF--VILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp CCCCSCTTE--EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ceeeccCCe--EEEEECCCcccHHHHHHHHHHHhhh
Confidence 444445444 4999999999999999999998753
No 182
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.35 E-value=0.00018 Score=62.73 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=28.7
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL 86 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~ 86 (259)
..+|..+.|+|.|++||||||+++.|++.++..+
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3345556699999999999999999999998765
No 183
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.34 E-value=0.00011 Score=60.80 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=23.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
++|.||+||||||+++.++..++..++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i 78 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFI 78 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 899999999999999999998875443
No 184
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.00021 Score=63.39 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=26.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKST 89 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~ 89 (259)
|.|.||||||||++|+.+|..++..++..
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred eEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 99999999999999999999999887643
No 185
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.31 E-value=0.00011 Score=65.30 Aligned_cols=30 Identities=33% Similarity=0.520 Sum_probs=26.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
++|+|.||+||||||++..|++.++..+++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis 32 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVIN 32 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEE
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEee
Confidence 469999999999999999999999876543
No 186
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.31 E-value=0.00078 Score=58.85 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
|.|.||+|+|||++|+.|++.++..++.
T Consensus 54 vll~GppGtGKT~la~~ia~~~~~~~~~ 81 (363)
T 3hws_A 54 ILLIGPTGSGKTLLAETLARLLDVPFTM 81 (363)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999999999876653
No 187
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.29 E-value=0.0001 Score=57.79 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=24.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
++|+|.|++||||||+++.|...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 459999999999999999999988654
No 188
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.29 E-value=0.00038 Score=61.01 Aligned_cols=26 Identities=31% Similarity=0.589 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.+|+|.|++||||||+++.|+..+..
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccc
Confidence 35999999999999999999998753
No 189
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.29 E-value=0.00012 Score=61.27 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=24.4
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+|.. ++|.||+||||||+++.|+..+.
T Consensus 22 i~~g~~--v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 22 HRKMGL--ILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp GCSSEE--EEEECSTTCSHHHHHHHHHHHHH
T ss_pred hCCCCE--EEEECCCCccHHHHHHHHHHhCC
Confidence 344444 99999999999999999999765
No 190
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.26 E-value=0.00021 Score=55.92 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=24.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
.++|+|.|++||||||++..|+..+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 5679999999999999999999987643
No 191
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.26 E-value=5.3e-05 Score=63.66 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=29.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.|.... |.. ++|.|++||||||+.+.|+..+
T Consensus 20 il~~vsl~i~-Ge~--~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 20 SLENINLEVN-GEK--VIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEEEEEEC-SSE--EEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEeeeEEEC-CEE--EEEECCCCCCHHHHHHHHhCCC
Confidence 4555666777 876 9999999999999999998764
No 192
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0002 Score=64.14 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=26.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
|.|.||||||||++|+.+|..++..++.
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~~~~~~ 236 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTKAAFIR 236 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence 9999999999999999999999988654
No 193
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.25 E-value=0.00021 Score=60.77 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=25.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
.+.|.||+|+|||++++.+|+.++..++.
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~~~~i~ 66 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMGINPIM 66 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48888999999999999999999887654
No 194
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.25 E-value=0.0002 Score=57.09 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~ 83 (259)
|+|.|++||||||+++.|+..+.
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhcc
Confidence 99999999999999999999874
No 195
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.24 E-value=0.00015 Score=59.45 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=23.3
Q ss_pred cccCCCCCeEEEEcCCCCcHHHHHHHHHH
Q psy16563 52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~ 80 (259)
...+|.. ++|.||+||||||+++.|+.
T Consensus 26 gi~~G~~--~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTT--VLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCE--EEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcE--EEEEeCCCCCHHHHHHHHHH
Confidence 3566666 99999999999999999984
No 196
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.00023 Score=64.50 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 29 LPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..++.++...|+... ....+|.. ++|.|++||||||+++.|+..+
T Consensus 118 mi~~~nl~~~y~~vs-------l~i~~Ge~--v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 118 MKYIYNLHFMLEKIR-------MSNFEGPR--VVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHHHHHHHHHHHH-------HHSSSCCC--EEEEESTTSSHHHHHHHHHHTT
T ss_pred hhhhhhhhehhhcCc-------eEeCCCCE--EEEECCCCCCHHHHHHHHhCcc
Confidence 356667777775332 34566666 9999999999999999999875
No 197
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.21 E-value=0.00052 Score=57.63 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=25.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
+.|.||+|+||||+++.+++.++..++
T Consensus 54 ~ll~G~~GtGKT~la~~la~~~~~~~~ 80 (285)
T 3h4m_A 54 ILLYGPPGTGKTLLAKAVATETNATFI 80 (285)
T ss_dssp EEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 999999999999999999999987654
No 198
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.21 E-value=0.00026 Score=60.68 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
..+|+|.|++||||||+++.|+..+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 446999999999999999999998764
No 199
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00025 Score=63.72 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=26.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKST 89 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~ 89 (259)
|.|.||||||||++|+.+|..++..++..
T Consensus 218 vLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999887643
No 200
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.19 E-value=0.00019 Score=60.36 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=23.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
|+|.||+||||||+++.|+..++..++
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i 102 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFI 102 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEE
Confidence 899999999999999999998875443
No 201
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.18 E-value=0.00027 Score=55.51 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.++|+|.|++||||||+++.|...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 567999999999999999999988653
No 202
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.18 E-value=0.00016 Score=63.85 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=28.2
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
..++.. |+|.||+||||||+++.|+..++..++.
T Consensus 166 i~~~~~--i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 166 IPKKRY--WLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CTTCCE--EEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred cCCCCE--EEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 455554 9999999999999999999988776554
No 203
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=97.17 E-value=0.00099 Score=56.78 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=35.7
Q ss_pred EEEEEecC-HHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 178 LVIYLTVS-EAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 178 lvI~L~a~-~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
++|||..| .+++. |+.+|+..+.... .+.-..+....+.... .++|+++ ++++..+++.++|...
T Consensus 217 i~IfI~pps~~~L~-~L~~R~t~~~i~~----rl~~a~~~e~~~~~~f---d~vivNd--~le~a~~~l~~ii~~~ 282 (295)
T 1kjw_A 217 IAIFIRPRSLENVL-EINKRITEEQARK----AFDRATKLEQEFTECF---SAIVEGD--SFEEIYHKVKRVIEDL 282 (295)
T ss_dssp EEEEECCSSHHHHH-HHCTTSCHHHHHH----HHHHHHHHHHHHGGGC---SEEECCS--SHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCHHHHH-HHHhcCCHHHHHH----HHHHHHHHHHhccccC---eEEEECc--CHHHHHHHHHHHHHhc
Confidence 78999977 55554 4888874321111 1111111122222221 2556655 4899999999998754
No 204
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.16 E-value=0.00019 Score=54.85 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.++|.|++||||||+++.++..+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 399999999999999999999874
No 205
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.0003 Score=63.42 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
|.|.||+|||||++|+.+|..++..++.
T Consensus 246 ILLyGPPGTGKTlLAkAiA~e~~~~fi~ 273 (467)
T 4b4t_H 246 ILLYGPPGTGKTLCARAVANRTDATFIR 273 (467)
T ss_dssp EEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence 9999999999999999999999988754
No 206
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.15 E-value=0.00018 Score=58.24 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=24.5
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+|.. ++|.|++||||||+++.|+..+.
T Consensus 22 i~~G~~--~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 22 IETQAI--TEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EESSEE--EEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCcE--EEEECCCCCCHHHHHHHHHHHHh
Confidence 555665 99999999999999999998543
No 207
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.15 E-value=0.00023 Score=59.07 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=25.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
|+|.|++|+||||+++.++..++..++.
T Consensus 48 vll~G~~GtGKT~la~~la~~~~~~~~~ 75 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAKVPFFT 75 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHcCCCEEE
Confidence 8999999999999999999998866543
No 208
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.15 E-value=0.00017 Score=58.29 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~ 81 (259)
++|.|++||||||+++.|+..
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999999986
No 209
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.12 E-value=0.00027 Score=60.26 Aligned_cols=28 Identities=32% Similarity=0.656 Sum_probs=25.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
|.|.||+||||||+++.++..++..++.
T Consensus 52 vLL~Gp~GtGKT~la~ala~~~~~~~i~ 79 (301)
T 3cf0_A 52 VLFYGPPGCGKTLLAKAIANECQANFIS 79 (301)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCcCHHHHHHHHHHHhCCCEEE
Confidence 9999999999999999999998876553
No 210
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.12 E-value=0.00012 Score=68.61 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=34.5
Q ss_pred HhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 38 IYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.|+....++++.|....+|.. ++|.|++||||||+++.|+..+.
T Consensus 363 ~y~~~~~~l~~isl~i~~G~~--~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 363 SYDKKKPVLKDITFHIKPGQK--VALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CSSSSSCSCCSEEEECCTTCE--EEEECCTTSSTTHHHHHHTTSSC
T ss_pred ECCCCCccccceEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCcC
Confidence 443333466777777888887 99999999999999999987654
No 211
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.11 E-value=0.00016 Score=67.42 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=33.5
Q ss_pred cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..++++.|....+|.. ++|.|++||||||+++.|+..+.
T Consensus 356 ~~~l~~i~l~i~~G~~--~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKT--VALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred ccccccceEEECCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 3467778888888887 99999999999999999988654
No 212
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.08 E-value=0.00025 Score=62.18 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=23.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
.++|.|++||||||+++.|+..+...
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 39999999999999999999987653
No 213
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0003 Score=63.12 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=26.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
|.|.||||||||++|+.+|..++..++.
T Consensus 218 vLLyGPPGTGKTllAkAiA~e~~~~f~~ 245 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAAQTNATFLK 245 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 9999999999999999999999988654
No 214
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.05 E-value=0.00033 Score=57.95 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=24.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
|.|.|++|+||||+++.+++.++..++
T Consensus 42 vll~G~~GtGKT~la~~la~~~~~~~~ 68 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVATEAQVPFL 68 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 899999999999999999999987654
No 215
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.04 E-value=0.00017 Score=61.30 Aligned_cols=30 Identities=20% Similarity=0.140 Sum_probs=25.9
Q ss_pred cccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
...+|.. ++|.|++||||||+++.|+..+.
T Consensus 31 ~l~~G~~--~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 31 GARGGEV--IMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp SBCTTCE--EEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCCCeE--EEEEeCCCCCHHHHHHHHHHHHH
Confidence 4666766 99999999999999999998764
No 216
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.04 E-value=0.00033 Score=60.65 Aligned_cols=27 Identities=22% Similarity=0.516 Sum_probs=24.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASL 86 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~ 86 (259)
.++|.||+|+||||+++.++..++..+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 399999999999999999999997654
No 217
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.02 E-value=0.00081 Score=56.85 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=24.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
+.|.|++|+|||++++.+++.++..++
T Consensus 53 vll~G~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 53 ILMIGPTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 899999999999999999999986543
No 218
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.01 E-value=0.00044 Score=59.87 Aligned_cols=27 Identities=37% Similarity=0.541 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
..+|+|.|++||||||+++.|+..+..
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 446999999999999999999998754
No 219
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.01 E-value=0.00035 Score=59.10 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=25.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
-|.|.||+|+||||+++.+++.++..++
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 3999999999999999999999987654
No 220
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.00 E-value=0.0012 Score=51.11 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.+.|.|++|+||||+++.+++.+..
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3899999999999999999998754
No 221
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.99 E-value=0.002 Score=57.87 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=25.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
|.|.||+||||||+++.||+.++..++
T Consensus 53 iLl~GppGtGKT~lar~lA~~l~~~~~ 79 (444)
T 1g41_A 53 ILMIGPTGVGKTEIARRLAKLANAPFI 79 (444)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCce
Confidence 999999999999999999999988765
No 222
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.98 E-value=0.00034 Score=64.63 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=29.1
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.| .+.+|.. ++|.|++||||||+++.|+..+
T Consensus 37 ~l~~vs-~i~~Ge~--~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 37 VLYRLP-VVKEGMV--VGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEECCC-CCCTTSE--EEEECCTTSSHHHHHHHHHTSS
T ss_pred cccCcC-cCCCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence 455566 6778777 9999999999999999998754
No 223
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.97 E-value=0.00045 Score=60.53 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+|+|.||+||||||+++.|...+..
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccC
Confidence 5999999999999999999988753
No 224
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.96 E-value=0.00059 Score=52.95 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.+.|.|++|+||||+++.+++.+..
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3899999999999999999999854
No 225
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.96 E-value=0.00047 Score=55.69 Aligned_cols=28 Identities=25% Similarity=0.200 Sum_probs=23.8
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+|.. ++|.|++||||||+++.++..+
T Consensus 20 i~~G~~--~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 20 IPQGFF--IALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EETTCE--EEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCE--EEEEcCCCCCHHHHHHHHHHHH
Confidence 455655 9999999999999999999765
No 226
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.96 E-value=0.00018 Score=63.10 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=25.7
Q ss_pred cccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
...+|.. |+|.|++||||||+++.|...+.
T Consensus 171 ~i~~G~~--i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 171 AVQLERV--IVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHTTCC--EEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHhcCCE--EEEECCCCCCHHHHHHHHHhcCC
Confidence 3556666 99999999999999999998765
No 227
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.94 E-value=0.0011 Score=50.00 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~ 82 (259)
|.|.|++|+|||++|+.+++..
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999999865
No 228
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.92 E-value=0.00058 Score=55.34 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=22.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.+.|.|++|+||||+++.+++.+..
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3999999999999999999998874
No 229
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.92 E-value=0.0002 Score=66.89 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=31.2
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.++++.|....+|.. ++|.|++||||||+++.|+..+.
T Consensus 357 ~~l~~v~~~i~~G~~--~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 357 PALRNINLKIPAGKT--VALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp CSEEEEEEEECTTCE--EEEEECTTSSHHHHHHHHTTTTC
T ss_pred ccccceeEEEcCCCE--EEEECCCCCCHHHHHHHHhhccC
Confidence 355566667777776 99999999999999999988654
No 230
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.91 E-value=0.00051 Score=57.80 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.++|.|++||||||+.+.|+....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 489999999999999999998753
No 231
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.89 E-value=0.0023 Score=54.19 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.+.|.|++|+||||+++.+++.+..
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcC
Confidence 3999999999999999999998853
No 232
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.88 E-value=0.0005 Score=60.54 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+|+|.|++||||||+++.|+..+..
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCc
Confidence 4999999999999999999998753
No 233
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.88 E-value=0.00056 Score=57.19 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=25.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
-+.|.|++|+||||+|+.+++.++..++
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~~~~~~ 93 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEESNFPFI 93 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 3999999999999999999999887654
No 234
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.88 E-value=0.00076 Score=57.79 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
..+|+|.|++||||||++..||..+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 346999999999999999999998753
No 235
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.00058 Score=61.02 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=26.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKST 89 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~ 89 (259)
|.|.||||||||++|+.+|..++..++..
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999887643
No 236
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.87 E-value=0.00042 Score=57.69 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=25.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKST 89 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~ 89 (259)
|.|.|++|+||||+++.+++.++..++..
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 78999999999999999999998776543
No 237
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.85 E-value=0.0014 Score=59.92 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=24.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
|+|.||+||||||+++.++..++..++
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~~~i 93 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARVPFI 93 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 899999999999999999999876554
No 238
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.84 E-value=0.0006 Score=58.63 Aligned_cols=29 Identities=31% Similarity=0.372 Sum_probs=25.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
-|.|.||+|+|||++|+.+++.++..++.
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~~~~~~~ 81 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEANSTFFS 81 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHHCCCEEE
Confidence 39999999999999999999999877653
No 239
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.82 E-value=0.0004 Score=55.69 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
.|+|.|++|+||||++..|+++.. ..+
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g~-~iI 62 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRGH-RLI 62 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTTC-EEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC-eEE
Confidence 499999999999999999999876 443
No 240
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.82 E-value=0.0002 Score=67.04 Aligned_cols=37 Identities=16% Similarity=0.047 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++.|....+|.. ++|.|++||||||+++.|+..+.
T Consensus 359 vl~~isl~i~~G~~--~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 359 IFQDFSLSIPSGSV--TALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp EEEEEEEEECTTCE--EEEECCTTSSSTHHHHHHTTSSC
T ss_pred cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCcC
Confidence 55666667778777 99999999999999999988654
No 241
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.80 E-value=0.00079 Score=52.56 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+.+|.|++||||||+++.|.-.++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5999999999999999999887764
No 242
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.80 E-value=0.00081 Score=53.92 Aligned_cols=26 Identities=12% Similarity=-0.047 Sum_probs=22.9
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHH
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~ 80 (259)
..+|.. ++|.|++||||||++..++.
T Consensus 17 i~~G~~--~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVL--TQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSE--EEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEE--EEEECCCCCCHHHHHHHHHH
Confidence 555555 99999999999999999998
No 243
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.79 E-value=0.0022 Score=57.62 Aligned_cols=29 Identities=24% Similarity=0.511 Sum_probs=25.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
.+.+|++.|++|+||||++..||.++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 45679999999999999999999987644
No 244
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.79 E-value=0.001 Score=52.92 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=22.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+.|.|++|+||||+++.+++.+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999998754
No 245
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.78 E-value=0.00088 Score=53.88 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=23.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
.++|.|++|+||||+++.+++.++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 49999999999999999999988754
No 246
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.78 E-value=0.00065 Score=58.99 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=24.1
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..++. +|+|.|++||||||+.+.|+..+.
T Consensus 52 ~~~g~--~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 52 TGRAI--RVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCCSE--EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCe--EEEEECCCCCCHHHHHHHHHHhhh
Confidence 44444 499999999999999999998764
No 247
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.77 E-value=0.00091 Score=58.43 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=25.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
|.|.||+|+|||++|+.+++.++..++.
T Consensus 87 iLL~GppGtGKT~la~ala~~~~~~~~~ 114 (355)
T 2qp9_X 87 ILLYGPPGTGKSYLAKAVATEANSTFFS 114 (355)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 8999999999999999999999876653
No 248
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.76 E-value=0.00018 Score=67.03 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=31.0
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.++++.|....+|.. ++|.||+||||||+++.|...+.
T Consensus 355 ~~l~~isl~i~~G~~--~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 355 PILKDINLSIEKGET--VAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp CSEEEEEEEECTTCE--EEEECSTTSSHHHHHTTTTTSSC
T ss_pred cceeeeEEEECCCCE--EEEECCCCChHHHHHHHHhcCCC
Confidence 355566667778877 99999999999999999987654
No 249
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.75 E-value=0.00062 Score=58.58 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.++++|+|++||||||+++.|....
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 5679999999999999999998754
No 250
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.75 E-value=0.00096 Score=53.00 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.|.|.|++|+||||+++.++..+..
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3999999999999999999998753
No 251
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.75 E-value=0.00082 Score=58.15 Aligned_cols=28 Identities=32% Similarity=0.568 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.++-+.|.||+|+||||+++.+++.+..
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3344899999999999999999998754
No 252
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.75 E-value=0.0011 Score=56.47 Aligned_cols=26 Identities=31% Similarity=0.310 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+|+|.|++|+||||++..|+..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44699999999999999999999876
No 253
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=96.74 E-value=0.0083 Score=57.33 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=37.5
Q ss_pred EEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563 178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPM 254 (259)
Q Consensus 178 lvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~~ 254 (259)
++||+..|.-+.++++..|+..+ + .+..++-..+++..|... -.++|+++ ++++.++++.++|.....
T Consensus 643 ~~ifi~pps~~~L~~l~~R~t~~--~--~~~rl~~a~~~e~~~~~~---fd~vi~Nd--~l~~a~~~l~~~i~~~~~ 710 (721)
T 2xkx_A 643 IAIFIRPRSLENVLEINKRITEE--Q--ARKAFDRATKLEQEFTEC---FSAIVEGD--SFEEIYHKVKRVIEDLSG 710 (721)
T ss_pred EEEEEeCCcHHHHHHHhccCCHH--H--HHHHHHHHHHHHHhcccc---CcEEEECc--CHHHHHHHHHHHHHhccC
Confidence 79999987555555588887431 1 111111111111112111 13566665 489999999999976543
No 254
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.74 E-value=0.00058 Score=63.98 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=28.8
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++.| .+.+|.. ++|.|++||||||+++.|+..+
T Consensus 107 ~l~~vs-~i~~Ge~--~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 107 VLYRLP-IVKDGMV--VGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEECCC-CCCTTSE--EEEECCTTSSHHHHHHHHTTSS
T ss_pred eeCCCC-CCCCCCE--EEEECCCCChHHHHHHHHhCCC
Confidence 455565 5677776 9999999999999999998754
No 255
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.73 E-value=0.00078 Score=58.06 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=23.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh-hccc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKL-KASL 86 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~-~~~~ 86 (259)
-|.|.||+|+|||++++.+++.+ +..+
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~~~~~~ 74 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEANNSTF 74 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTSCEE
T ss_pred eEEEECCCCccHHHHHHHHHHHcCCCcE
Confidence 39999999999999999999998 5444
No 256
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.73 E-value=0.001 Score=57.34 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
..+|+|.|++|+||||++..||..+..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 446999999999999999999998764
No 257
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.72 E-value=0.00082 Score=58.99 Aligned_cols=27 Identities=37% Similarity=0.565 Sum_probs=24.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
|.|.|++|+||||+|+.|++.++..++
T Consensus 75 ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 75 ILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 999999999999999999999986643
No 258
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.71 E-value=0.00026 Score=66.19 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=31.1
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.++++.|....+|.. ++|.|++||||||+++.|+..+.
T Consensus 357 ~~l~~isl~i~~Ge~--~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 357 PVLSGVNFSVKPGSL--VAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp CSEEEEEEEECTTCE--EEEECSSSSSHHHHHHTTTTSSC
T ss_pred cceeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCcc
Confidence 355566667777777 99999999999999999988654
No 259
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.71 E-value=0.00089 Score=59.87 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+|+|.||+||||||+++.|...+..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCC
Confidence 4999999999999999999998753
No 260
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.70 E-value=0.00025 Score=61.51 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=24.5
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+|.. ++|.|++||||||+++.|+..+.
T Consensus 168 i~~g~~--v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 168 IAIGKN--VIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHTCC--EEEEESTTSCHHHHHHHGGGGSC
T ss_pred ccCCCE--EEEECCCCCCHHHHHHHHhCCCc
Confidence 445555 99999999999999999998764
No 261
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.68 E-value=0.00094 Score=56.65 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=23.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
+.|.|++|+||||+++.+++.++..
T Consensus 70 vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 70 MSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998653
No 262
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.0015 Score=56.17 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+.+.|.||+|+|||++++.+++.+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 345599999999999999999999985
No 263
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.64 E-value=0.001 Score=54.22 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=23.4
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
..+|.. ++|.|++||||||++..|+..
T Consensus 21 i~~G~~--~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSI--TEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeE--EEEECCCCCcHHHHHHHHHHH
Confidence 455555 999999999999999999985
No 264
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.63 E-value=0.0014 Score=56.53 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
-+.|.||+|+||||+++.+++.++.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3899999999999999999999763
No 265
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.62 E-value=0.0013 Score=56.51 Aligned_cols=28 Identities=29% Similarity=0.596 Sum_probs=25.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
|.|.|++|+||||+++.+++.++..++.
T Consensus 58 vll~G~~GtGKT~la~~ia~~~~~~~~~ 85 (338)
T 3pfi_A 58 ILFSGPAGLGKTTLANIISYEMSANIKT 85 (338)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTCCEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 9999999999999999999998876543
No 266
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.60 E-value=0.00069 Score=60.62 Aligned_cols=30 Identities=23% Similarity=0.117 Sum_probs=24.0
Q ss_pred cccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
...+|..+-++|.|++||||||+++.|+..
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 456665445899999999999999999864
No 267
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.60 E-value=0.0012 Score=57.13 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
+.+.|.||+|+||||+++.+++.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 339999999999999999999965
No 268
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.60 E-value=0.0011 Score=57.95 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=25.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
-|.|.|++|+||||+++.+++.++..++
T Consensus 119 ~vLl~GppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 4999999999999999999999987654
No 269
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.59 E-value=0.004 Score=52.11 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=39.4
Q ss_pred cHHHHHHHHHhhccCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 13 SLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
+-..+.++|+-+..+...-...+.+-+.+. ..+.+. |+|.||+|+|||+++..|+..+
T Consensus 71 ~~n~i~~~l~~qg~~~~~~~~~l~~~l~~~----------~~~~n~--~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 71 SSNRIYKILELNGYDPQYAASVFLGWATKK----------FGKRNT--IWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp GGCHHHHHHHHTTCCHHHHHHHHHHHHTTC----------STTCCE--EEEECSTTSSHHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHhCC----------CCCCcE--EEEECCCCCCHHHHHHHHHhhh
Confidence 345778888776666554444444544332 111224 9999999999999999999974
No 270
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.58 E-value=0.0015 Score=56.00 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+.|.|++|+||||+++.++..+.
T Consensus 40 lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 40 IFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999883
No 271
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.57 E-value=0.00072 Score=61.47 Aligned_cols=32 Identities=25% Similarity=0.225 Sum_probs=25.3
Q ss_pred CCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 49 DSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 49 ~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+..+.+ . +++|.|++||||||+++.|+..+.
T Consensus 23 vsl~i~~-e--~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 23 RTFDFDE-L--VTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp EEEECCS-S--EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEcc-c--eEEEECCCCCcHHHHHHHHhcCCC
Confidence 3334444 3 499999999999999999998764
No 272
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.56 E-value=0.0013 Score=60.82 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=25.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
.+.++|.||+||||||+++.|+..++..+.
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 345999999999999999999999876543
No 273
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.54 E-value=0.0016 Score=58.84 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
.+-+.|.||+|+||||+++.+++.++..++.
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~ 80 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYANADVER 80 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 3459999999999999999999999876543
No 274
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.54 E-value=0.00083 Score=62.03 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=24.6
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+.+|.. ++|.|++||||||+++.|+..+.
T Consensus 291 i~~Gei--~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 291 AKEGEI--IGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EETTCE--EEEECCTTSSHHHHHHHHTTSSC
T ss_pred ECCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 456665 99999999999999999988653
No 275
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.54 E-value=0.0026 Score=54.15 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
..+|++.|++|+||||++..|+..+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345999999999999999999998764
No 276
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.53 E-value=0.0031 Score=54.97 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=24.5
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+..++|+|.|.+|+||||++..|+..+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3466799999999999999999998874
No 277
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.52 E-value=0.0015 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
..|+|.|++||||||+.+.|...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45999999999999999999864
No 278
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.52 E-value=0.001 Score=61.38 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=24.1
Q ss_pred cCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+|.. ++|.|++||||||+++.|+..+.
T Consensus 310 ~~Ge~--~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 310 KKGEV--IGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp ETTCE--EEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 45665 99999999999999999998653
No 279
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.52 E-value=0.0015 Score=58.81 Aligned_cols=31 Identities=19% Similarity=0.100 Sum_probs=26.9
Q ss_pred cccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
...+|.. ++|.|++||||||+++.|+.....
T Consensus 153 ~i~~Gq~--~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 153 TVGRGQR--MGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp CCBTTCE--EEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EecCCCE--EEEECCCCCCHHHHHHHHhcccCC
Confidence 4667776 999999999999999999998753
No 280
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.51 E-value=0.00052 Score=65.09 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=27.0
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHH
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVA 79 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~ 79 (259)
.+++.|..+.+|.+ ++|.||+||||||+++.+.
T Consensus 337 ~L~~vsl~I~~Ge~--vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 337 NLKNVSVKIPLGTF--VAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TCCSEEEEEETTSE--EEEECSTTSSHHHHHTTTH
T ss_pred ccccceeEecCCCE--EEEEeeCCCCHHHHHHHHH
Confidence 45666677788877 9999999999999997653
No 281
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.50 E-value=0.0032 Score=54.62 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.++|.|++|+||||+++.+++.+
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 39999999999999999999987
No 282
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.50 E-value=0.0017 Score=56.56 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.++|+|.|++||||||+.+.|...+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 56799999999999999999998764
No 283
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.50 E-value=0.0019 Score=56.14 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=23.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.+.|.||+|+|||++++.+++.++.
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3999999999999999999999875
No 284
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.49 E-value=0.0023 Score=61.99 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.3
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
...+.. |+|.|++||||||+++.|+..++..++
T Consensus 235 i~~~~~--vLL~Gp~GtGKTtLarala~~l~~~~i 267 (806)
T 1ypw_A 235 VKPPRG--ILLYGPPGTGKTLIARAVANETGAFFF 267 (806)
T ss_dssp CCCCCE--EEECSCTTSSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCe--EEEECcCCCCHHHHHHHHHHHcCCcEE
Confidence 344445 999999999999999999998876654
No 285
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.49 E-value=0.0017 Score=59.59 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=26.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
+.+.|.||+|+||||+++.+++.++..++.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 459999999999999999999999876653
No 286
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.48 E-value=0.0015 Score=59.45 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
|.|.||+|+||||+++.++..++..++.
T Consensus 52 vLL~GppGtGKT~Laraia~~~~~~f~~ 79 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEANVPFFH 79 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 8999999999999999999999877653
No 287
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.48 E-value=0.0015 Score=54.86 Aligned_cols=29 Identities=17% Similarity=0.104 Sum_probs=24.1
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+|.. ++|.|++||||||++..++..+.
T Consensus 27 l~~G~i--~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 27 MVAGTV--GALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EETTSE--EEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCCE--EEEEcCCCCCHHHHHHHHHHHHh
Confidence 455555 99999999999999999997553
No 288
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.48 E-value=0.0026 Score=61.33 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=25.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
|.|.||+|||||++++.+|..++..++.
T Consensus 241 ILL~GPPGTGKT~LAraiA~elg~~~~~ 268 (806)
T 3cf2_A 241 ILLYGPPGTGKTLIARAVANETGAFFFL 268 (806)
T ss_dssp EEEECCTTSCHHHHHHHHHTTTTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 9999999999999999999999987653
No 289
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0011 Score=62.21 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=28.0
Q ss_pred CCCCCCcccCCCC---CeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 46 NDQDSGVGDDRKY---PLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 46 ~~~~~~~~~~~~~---~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+++.+....+|.+ -+++|.|++||||||+++.|+..+.
T Consensus 363 l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3444445555533 3599999999999999999988653
No 290
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.47 E-value=0.0044 Score=55.03 Aligned_cols=28 Identities=21% Similarity=0.076 Sum_probs=22.7
Q ss_pred cccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.+.+|.+ ++|.|++||||||++..|+-.
T Consensus 174 GI~~Gei--~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 174 GVETGSI--TELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEETTSE--EEEEESTTSSHHHHHHHHHHH
T ss_pred CcCCCcE--EEEEcCCCCChHHHHHHHHHH
Confidence 3555555 999999999999999987643
No 291
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.46 E-value=0.0012 Score=61.92 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=23.9
Q ss_pred cCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+|.. ++|.|++||||||+++.|+..+.
T Consensus 380 ~~Gei--~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 380 RKGEV--IGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp ETTCE--EEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence 45665 99999999999999999998653
No 292
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.44 E-value=0.00088 Score=61.67 Aligned_cols=36 Identities=19% Similarity=0.050 Sum_probs=27.0
Q ss_pred cCCCCCC-cccCCCCCeEEEEcCCCCcHHHHHHH--HHHHh
Q psy16563 45 TNDQDSG-VGDDRKYPLIVFEGLDGCGKSHTSQT--VAKKL 82 (259)
Q Consensus 45 ~~~~~~~-~~~~~~~~ii~~~g~~g~gkst~~~~--l~~~~ 82 (259)
.+++.+. ...+|.. ++|.|++||||||+++. ++..+
T Consensus 27 ~Ld~i~~G~i~~Ge~--~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 27 GFDDISHGGLPIGRS--TLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp THHHHTTSSEETTSE--EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCeE--EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3444444 5677776 99999999999999999 44544
No 293
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.43 E-value=0.00076 Score=66.22 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=26.4
Q ss_pred CCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHH
Q psy16563 46 NDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 46 ~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~ 80 (259)
+++.|..+.+|.. ++|.|++||||||+++.|+.
T Consensus 451 L~~vsl~I~~Ge~--v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 451 LNKTQLRLKRARR--YGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEEETTCE--EEEECSTTSSHHHHHHHHHH
T ss_pred EecceEEEcCCCE--EEEECCCCCCHHHHHHHHhC
Confidence 3444555666665 99999999999999999984
No 294
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.42 E-value=0.0017 Score=56.62 Aligned_cols=31 Identities=19% Similarity=0.059 Sum_probs=26.7
Q ss_pred cccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
...+|.. ++|.|++||||||+++.|+.....
T Consensus 67 ~i~~Gq~--~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 67 TCGIGQR--IGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp CEETTCE--EEEEECTTSSHHHHHHHHHHHSCC
T ss_pred eecCCCE--EEEECCCCCCHHHHHHHHhcCCCC
Confidence 4666766 999999999999999999998753
No 295
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.41 E-value=0.0021 Score=52.41 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=23.1
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+|.. ++|.|++||||||++..++..+
T Consensus 20 l~~G~~--~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 20 IPERNV--VLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp EETTCE--EEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcE--EEEECCCCCCHHHHHHHHHHHH
Confidence 555665 9999999999999988887654
No 296
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.41 E-value=0.0016 Score=56.00 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=24.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASL 86 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~ 86 (259)
+.|.|++|+|||++++.+++.++..+
T Consensus 49 vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 99999999999999999999988654
No 297
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.40 E-value=0.0017 Score=58.18 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
...+|++.|++||||||++..|+.++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35579999999999999999999987643
No 298
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.40 E-value=0.0018 Score=51.21 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.|+|.|++||||||+.+.|...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999999864
No 299
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.39 E-value=0.0038 Score=54.21 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+.|.||+|+||||+++.+++.+
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 39999999999999999999988
No 300
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.0016 Score=60.95 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=24.4
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+|.. ++|.||+||||||+.+.|+..+.
T Consensus 100 ~~~Gei--~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 100 PRPGQV--LGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp CCTTSE--EEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCCE--EEEECCCCChHHHHHHHHhcCCC
Confidence 455665 99999999999999999998653
No 301
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.38 E-value=0.0018 Score=57.20 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKST 89 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~ 89 (259)
-|.|.|++|+|||++++.++..++..++..
T Consensus 150 ~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 150 GLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 399999999999999999999998876543
No 302
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.38 E-value=0.0018 Score=58.53 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=22.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+.|.||+|+|||++|+.+|+.++
T Consensus 66 iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 66 VLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCcCCHHHHHHHHHHHhC
Confidence 99999999999999999999998
No 303
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.37 E-value=0.0042 Score=54.12 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+.|.|++|+||||+++.+++.+
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 359999999999999999999987
No 304
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.37 E-value=0.0023 Score=51.41 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+.|+|.|.+|+||||++..|+..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45699999999999999999998864
No 305
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.37 E-value=0.0016 Score=55.52 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=24.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
+.|.|++|+||||+++.+++.++..++
T Consensus 41 vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 41 LLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 899999999999999999999987654
No 306
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.37 E-value=0.0006 Score=69.42 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=31.9
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.++++.|..+.+|.. ++|.|++||||||++++|.+.+.
T Consensus 432 ~vL~~isl~i~~G~~--vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 432 PILRGMNLRVNAGQT--VALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CSEEEEEEEECTTCE--EEEEECSSSCHHHHHHHHTTSSC
T ss_pred ceeeceEEeecCCcE--EEEEecCCCcHHHHHHHhccccc
Confidence 356667777788877 99999999999999999988765
No 307
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.36 E-value=0.0022 Score=55.97 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+.++|.|++|+||||+++.+++.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4599999999999999999999884
No 308
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.36 E-value=0.0012 Score=60.85 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=22.8
Q ss_pred cCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+|.. ++|.|++||||||+++.|+..+
T Consensus 23 ~~Gei--~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTI--LGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEE--EEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCE--EEEECCCCCcHHHHHHHHhcCC
Confidence 44444 9999999999999999998754
No 309
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.35 E-value=0.0012 Score=60.67 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=23.6
Q ss_pred cCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..|.. |+|.|++||||||+++.|...+.
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHHHHHGGGSC
T ss_pred hCCCE--EEEECCCCCCHHHHHHHHHhhCC
Confidence 34444 99999999999999999988764
No 310
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=96.34 E-value=0.042 Score=46.84 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASL 86 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~ 86 (259)
|+|.|| ||+|+.+.|-..+...+
T Consensus 148 vVl~GP---~k~~l~~~L~~~~P~~F 170 (308)
T 3kfv_A 148 VVILGP---VADIAMQKLTAEMPDQF 170 (308)
T ss_dssp EEEEST---THHHHHHHHHHHCTTTE
T ss_pred EEEeCc---cHHHHHHHHHHhCcccc
Confidence 899999 79999999988877654
No 311
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.34 E-value=0.0019 Score=50.94 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
|.|.|++||||||+|+.|+.. +.+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~ 25 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQ 25 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSS
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCC
Confidence 889999999999999999876 543
No 312
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.33 E-value=0.0057 Score=54.70 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=24.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
..+|+|.|++||||||++..|+..+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4469999999999999999999998643
No 313
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.31 E-value=0.00067 Score=69.09 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=38.2
Q ss_pred HHHHHHhhhcc--ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 33 EELLNIYSRIN--ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 33 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+++.-.|+..+ .++++.|..+.+|.. |+|.|++||||||++++|.+.+.
T Consensus 1080 ~nVsf~Y~~~~~~~VL~~isl~I~~Ge~--vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1080 KNVRFAYPERPEIEILKGLSFSVEPGQT--LALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp EEEEECCTTSCSSCSEEEEEEEECTTCE--EEEECSTTSSTTSHHHHHTTSSC
T ss_pred EEEEEeCCCCCCCccccceeEEECCCCE--EEEECCCCChHHHHHHHHhcCcc
Confidence 33444565433 367778888889888 99999999999999999988664
No 314
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.31 E-value=0.003 Score=53.62 Aligned_cols=26 Identities=31% Similarity=0.622 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+-+.|.|++|+||||+++.+++.+..
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 34999999999999999999998754
No 315
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.30 E-value=0.0012 Score=62.69 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=29.5
Q ss_pred ccCChHHHHHHHHHhhh--ccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHH
Q psy16563 25 QYSSLPEVEELLNIYSR--INETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTS 75 (259)
Q Consensus 25 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~ 75 (259)
....+|+-..+...+.. ....+++.|..+.+|.. ++|.||+||||||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~L~~vsl~i~~Ge~--~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 11 SSGLVPRGSHMDKIIVKGARAHNLKNIDVEIPRGKL--VVLTGLSGSGKSSLA 61 (670)
T ss_dssp -----------CEEEEEEECSTTCCSEEEEEETTSE--EEEECSTTSSHHHHH
T ss_pred ccCcccCCCCcceEEEcCCCccceeccEEEECCCCE--EEEECCCCCCHHHHh
Confidence 34556666666544422 23467788888888887 999999999999996
No 316
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.30 E-value=0.0012 Score=49.73 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~ 83 (259)
|.|.|++|+|||++|+.+++..+
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTTS
T ss_pred EEEECCCCccHHHHHHHHHHhCC
Confidence 89999999999999999988765
No 317
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.29 E-value=0.0029 Score=49.93 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
++++.|++||||||++..++..+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999997766655
No 318
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.28 E-value=0.0042 Score=51.51 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~ 83 (259)
|.|.|++|+|||++++.+++.+.
T Consensus 32 vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 32 VLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp EEEECCTTSCHHHHHHHHHHTST
T ss_pred EEEECCCCCcHHHHHHHHHHhcC
Confidence 89999999999999999998765
No 319
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.28 E-value=0.0022 Score=54.78 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++|.|++||||||+++.|. .+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 359999999999999999998 43
No 320
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.27 E-value=0.0021 Score=57.33 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
+|+|.|++||||||+.+.|...+
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 59999999999999999998743
No 321
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.26 E-value=0.002 Score=65.39 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=33.4
Q ss_pred ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.++++.|..+.+|.. ++|.|++||||||+++.|...+.
T Consensus 1047 ~~l~~vsl~i~~Ge~--v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQT--LALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp CSBSSCCEEECSSSE--EEEECSSSTTHHHHHHHHTTSSC
T ss_pred eeecceeEEEcCCCE--EEEECCCCCCHHHHHHHHhcCcC
Confidence 467888888899887 99999999999999999988654
No 322
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.26 E-value=0.0021 Score=57.93 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=24.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh-hcccc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKL-KASLK 87 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~-~~~~~ 87 (259)
-|.|.||+|+|||++++.++..+ +..++
T Consensus 169 ~vLL~GppGtGKT~lA~aia~~~~~~~~~ 197 (444)
T 2zan_A 169 GILLFGPPGTGKSYLAKAVATEANNSTFF 197 (444)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCCSSEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCCEE
Confidence 39999999999999999999998 55544
No 323
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.23 E-value=0.0034 Score=53.08 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
-+.|.||+|+||||+++.+++.+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 399999999999999999999874
No 324
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.23 E-value=0.0024 Score=48.82 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
.|+|.|++|+||||+.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 499999999999999999975
No 325
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.22 E-value=0.0023 Score=55.73 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=24.6
Q ss_pred cccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+.+|.. +.|.|++||||||++..++...
T Consensus 127 gi~~G~i--~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAI--TEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEE--EEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeE--EEEECCCCCCHHHHHHHHHHHh
Confidence 3455555 9999999999999999999876
No 326
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.22 E-value=0.0023 Score=55.96 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
+++|.|++||||||+++.|+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 49999999999999999998644
No 327
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.21 E-value=0.0007 Score=66.47 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=29.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++.|.....|.. ++|.|++||||||+++.|+..+.
T Consensus 688 iL~dVSl~I~~Gei--vaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 688 QITDINFQCSLSSR--IAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp SEEEEEEEEETTCE--EEECSCCCHHHHHHHHHHTTSSC
T ss_pred eeeccEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 34555666777776 99999999999999999987543
No 328
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.21 E-value=0.0028 Score=48.20 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+.+|.|++||||||+...|.-.+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 589999999999999999986653
No 329
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.21 E-value=0.0079 Score=54.98 Aligned_cols=29 Identities=34% Similarity=0.519 Sum_probs=23.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
....+|+|.|++||||||++..|+.++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34557999999999999999999988753
No 330
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.20 E-value=0.0031 Score=56.57 Aligned_cols=28 Identities=29% Similarity=0.615 Sum_probs=24.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+.+.+|+|.|++|+||||++..|+.++.
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3345699999999999999999999875
No 331
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.17 E-value=0.0072 Score=51.44 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
..+|++.|++|+||||++..|+..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 446999999999999999999998753
No 332
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.15 E-value=0.0032 Score=49.27 Aligned_cols=24 Identities=21% Similarity=0.327 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
|+|.|++|+||||++..|.++ |..
T Consensus 19 vli~G~SGaGKStlal~L~~r-G~~ 42 (181)
T 3tqf_A 19 VLITGEANIGKSELSLALIDR-GHQ 42 (181)
T ss_dssp EEEEESSSSSHHHHHHHHHHT-TCE
T ss_pred EEEEcCCCCCHHHHHHHHHHc-CCe
Confidence 999999999999999999884 444
No 333
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.14 E-value=0.0022 Score=54.70 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.+++|.|++||||||+.+.|+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 359999999999999999997643
No 334
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.14 E-value=0.0037 Score=54.19 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
...+|+|.|++|+||||+++.|+..+.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 355699999999999999999998764
No 335
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.13 E-value=0.0031 Score=47.47 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.|++.|.+|+||||+++.|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4999999999999999998753
No 336
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.11 E-value=0.0038 Score=50.20 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+.|+|.|.+|+||||++..|+..+.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45699999999999999999998753
No 337
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.10 E-value=0.0021 Score=55.36 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=22.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~ 83 (259)
|.|.|++|+|||++++.+++.++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 99999999999999999999886
No 338
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.09 E-value=0.0034 Score=53.68 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+.|.|++|+|||+++..++..+.
T Consensus 155 lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 155 LYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999877
No 339
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.08 E-value=0.0013 Score=66.78 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=30.9
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++++.|..+.+|.. ++|.|++||||||+++.|...+.
T Consensus 405 vL~~isl~i~~G~~--~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 405 ILKGLNLKVKSGQT--VALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp SEEEEEEEECTTCE--EEEECCSSSSHHHHHHHTTTSSC
T ss_pred ceecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence 55666667777777 99999999999999999987654
No 340
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.07 E-value=0.0068 Score=52.28 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=24.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASL 86 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~ 86 (259)
.+.|.|++|+||||+++.+++.+....
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~~~ 52 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLCQQ 52 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred eEEEECCCCchHHHHHHHHHHHHhCCC
Confidence 499999999999999999999987643
No 341
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.06 E-value=0.0044 Score=52.51 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=22.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.+.|.|++|+||||+++.+++.+..
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcC
Confidence 3999999999999999999998743
No 342
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.06 E-value=0.00064 Score=55.72 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+++|.||+||||||+++.|+-.+.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 378999999999999999988765
No 343
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.06 E-value=0.0018 Score=51.48 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~ 80 (259)
..|+|.|++||||||+.+.|..
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3499999999999999998864
No 344
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.0085 Score=46.67 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.+.|+|.|++|+||||+++.|...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 445999999999999999998753
No 345
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.05 E-value=0.0017 Score=55.66 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=21.9
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+|.. ++|.|++|+||||+++.|....
T Consensus 170 ~~~G~~--~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 170 HFQDKT--TVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp GGTTSE--EEEEESHHHHHHHHHHHHCC--
T ss_pred hcCCCE--EEEECCCCCCHHHHHHHhcccc
Confidence 445554 9999999999999999997543
No 346
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.03 E-value=0.00094 Score=59.28 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=25.7
Q ss_pred CCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 49 DSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 49 ~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+..+.+| +++|.|++||||||+.+.|.-.++
T Consensus 54 v~l~~~~G---~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 54 LELELGGG---FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEECCSS---EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred EEEecCCC---cEEEECCCCCCHHHHHHHHHHHhC
Confidence 34445555 499999999999999999977765
No 347
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.02 E-value=0.0021 Score=60.22 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
.|.|+|.|++||||||+++.|+..+
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CCeEEEECCCCChHHHHHHHHhCCC
Confidence 4559999999999999999998764
No 348
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.00 E-value=0.0019 Score=62.54 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=25.9
Q ss_pred cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHH
Q psy16563 43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTS 75 (259)
Q Consensus 43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~ 75 (259)
.+-+++++..+.++++ ++|+|++|||||||+
T Consensus 23 ~hNLkni~v~iP~~~l--~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 23 QHNLKDISVKVPRDAL--VVFTGVSGSGKSSLA 53 (842)
T ss_dssp STTCCSEEEEEESSSE--EEEESSTTSSHHHHH
T ss_pred ccCCCCeeEEecCCCE--EEEECCCCCCHHHHH
Confidence 4456777777777776 999999999999998
No 349
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.00 E-value=0.0029 Score=49.27 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy16563 61 IVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~ 80 (259)
|+|.|++|+||||+.+.+..
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 99999999999999999875
No 350
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.99 E-value=0.0036 Score=60.62 Aligned_cols=29 Identities=31% Similarity=0.627 Sum_probs=26.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKST 89 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~ 89 (259)
++|.||+||||||+++.|+..++..++..
T Consensus 514 vLL~GppGtGKT~Lakala~~~~~~~i~v 542 (806)
T 1ypw_A 514 VLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CCCBCCTTSSHHHHHHHHHHHHTCCCCCC
T ss_pred eEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 89999999999999999999998776543
No 351
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.99 E-value=0.0033 Score=57.35 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=24.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLK 87 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~ 87 (259)
|.|.|++|+|||++++.++..++..++
T Consensus 241 vLL~GppGtGKT~lAraia~~~~~~fv 267 (489)
T 3hu3_A 241 ILLYGPPGTGKTLIARAVANETGAFFF 267 (489)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCSSEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhCCCEE
Confidence 999999999999999999999887655
No 352
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.96 E-value=0.0038 Score=48.47 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~ 80 (259)
+.|+|.|++|+||||+.+.|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3499999999999999999976
No 353
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.96 E-value=0.004 Score=55.96 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+.|.|++|+||||+++.++..+.
T Consensus 133 lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 133 LFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999874
No 354
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.96 E-value=0.002 Score=63.05 Aligned_cols=30 Identities=23% Similarity=0.250 Sum_probs=23.1
Q ss_pred CCCcccCCCCCeEEEEcCCCCcHHHHHHHHHH
Q psy16563 49 DSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 49 ~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~ 80 (259)
.+....+|.+ ++|+||+||||||+.+.++.
T Consensus 666 vsl~~~~g~i--~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 666 TDLSEDSERV--MIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEECTTSCCE--EEEESCCCHHHHHHHHHHHH
T ss_pred ccccCCCCeE--EEEECCCCCchHHHHHHHHH
Confidence 3333444554 99999999999999999874
No 355
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.95 E-value=0.0054 Score=48.95 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+.|+|.|++|+||||++..|....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34569999999999999999998753
No 356
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.95 E-value=0.0048 Score=52.69 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=25.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS 88 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~ 88 (259)
++.+.||+|+||||+++.+++.++..++.
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l~~~~~~ 78 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDVNADMMF 78 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCCCEEE
Confidence 47788889999999999999999876653
No 357
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.94 E-value=0.0049 Score=49.34 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.+++.++|++|||||+.+..+...
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Confidence 567999999999999999886544
No 358
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.93 E-value=0.0045 Score=46.84 Aligned_cols=22 Identities=32% Similarity=0.299 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
-|+|.|.+|+||||+++.|...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3999999999999999998763
No 359
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.92 E-value=0.008 Score=54.91 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=22.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
|.|.|++|+|||++|+.|+..++.
T Consensus 44 VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 44 VFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp EEEECCSSSSHHHHHHHGGGGBSS
T ss_pred eEeecCchHHHHHHHHHHHHHHhh
Confidence 999999999999999999998753
No 360
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.91 E-value=0.0047 Score=53.54 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=23.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
.+.|.|++|+||||+++.+++.++..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 38999999999999999999998754
No 361
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=95.91 E-value=0.0027 Score=62.08 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=26.3
Q ss_pred cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHH
Q psy16563 43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTS 75 (259)
Q Consensus 43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~ 75 (259)
.+-+++++.++.++++ ++|+|++|||||+||
T Consensus 11 ~hNLkni~~~ip~~~l--~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 11 VHNLKNITVRIPKNRL--VVITGVSGSGKSSLA 41 (916)
T ss_dssp STTCCSBCCEEETTSE--EEEEESTTSSSHHHH
T ss_pred ccccCcceeccCCCcE--EEEECCCCCcHHHHH
Confidence 4457777778888777 999999999999998
No 362
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.91 E-value=0.0046 Score=46.43 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~ 81 (259)
|++.|.+|+||||+++.|...
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 999999999999999998753
No 363
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.89 E-value=0.0044 Score=47.84 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.|+|.|.+|+||||+.+.|...
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3999999999999999999754
No 364
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.85 E-value=0.0066 Score=47.34 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~ 80 (259)
.+.|+|.|.+|+||||+.+.|..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45699999999999999999864
No 365
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.85 E-value=0.0073 Score=46.21 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~ 80 (259)
.+.|+|.|.+|+||||+.+.|..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44599999999999999998864
No 366
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.85 E-value=0.005 Score=46.35 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy16563 61 IVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~ 80 (259)
|+|.|++|+||||+.+.|..
T Consensus 6 i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 99999999999999988875
No 367
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.85 E-value=0.0045 Score=48.55 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
.|+|.|.+|+||||+.+.+..
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 399999999999999999875
No 368
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.83 E-value=0.0071 Score=46.97 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.+.|+|.|.+|+||||+++.|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 456999999999999999988654
No 369
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.82 E-value=0.0053 Score=46.28 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~ 81 (259)
|+|.|.+|+||||+.+.|...
T Consensus 7 i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 999999999999999998753
No 370
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.80 E-value=0.0031 Score=60.91 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.+++|+||+||||||+.+.++..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 35999999999999999999875
No 371
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.78 E-value=0.0027 Score=62.25 Aligned_cols=31 Identities=29% Similarity=0.288 Sum_probs=25.7
Q ss_pred cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHH
Q psy16563 43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTS 75 (259)
Q Consensus 43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~ 75 (259)
.+-+++++..+.++++ |+|+|++||||||||
T Consensus 33 ~hNLkni~v~iP~~~l--vv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 33 EHNLRSVDLDLPRDAL--IVFTGLSGSGKSSLA 63 (993)
T ss_dssp SSSCCSEEEEEESSSE--EEEEESTTSSHHHHH
T ss_pred ccccCceeeeccCCCE--EEEECCCCCcHHHHH
Confidence 4456777777777776 999999999999997
No 372
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.78 E-value=0.0063 Score=50.12 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+++++.|..|+||||++..|+..+.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 45699999999999999999998875
No 373
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.77 E-value=0.0076 Score=54.08 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
.+.+|++.|+.|+||||++..||.++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 34579999999999999999999988654
No 374
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.76 E-value=0.0028 Score=61.97 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=25.8
Q ss_pred cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHH
Q psy16563 43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTS 75 (259)
Q Consensus 43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~ 75 (259)
.+-+++++..+.++++ |+|+|++||||||||
T Consensus 31 ~hNLkni~v~iP~~~l--vv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 31 AHNLKNIDVEIPRGKL--VVLTGLSGSGKSSLA 61 (972)
T ss_dssp SSSCCSEEEEEETTSE--EEEEESTTSSHHHHH
T ss_pred cccCCceeeeccCCcE--EEEECCCCCCHHHHH
Confidence 4466777777777776 999999999999997
No 375
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.75 E-value=0.0048 Score=57.70 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=22.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
++|.|++||||||+++.|+..+..
T Consensus 63 vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 63 VLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp EEEECCTTSSHHHHHHHHHHTSCC
T ss_pred EEEEeCCCCCHHHHHHHHhccCCc
Confidence 999999999999999999998753
No 376
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.73 E-value=0.017 Score=55.37 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=23.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASL 86 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~ 86 (259)
+.|.||+|+|||++|+.|++.++..+
T Consensus 491 ~ll~G~~GtGKT~la~~la~~l~~~~ 516 (758)
T 1r6b_X 491 FLFAGPTGVGKTEVTVQLSKALGIEL 516 (758)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCCE
Confidence 89999999999999999999997554
No 377
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.72 E-value=0.0061 Score=46.08 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~ 81 (259)
|+|.|.+|+||||+.+.|...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999988653
No 378
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.71 E-value=0.013 Score=49.64 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
..|.|+|.|.+|+||||+.+.|...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 3567999999999999999999653
No 379
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=95.71 E-value=0.023 Score=48.18 Aligned_cols=65 Identities=6% Similarity=0.065 Sum_probs=37.1
Q ss_pred EEEEEecC-HHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563 178 LVIYLTVS-EAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252 (259)
Q Consensus 178 lvI~L~a~-~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~ 252 (259)
++||+..| .+++.+|++.|+..+. +. ...-..+.+..|..+. .++|.++ ++++++++|.++|...
T Consensus 212 i~IFI~PpS~e~L~~r~~~r~~e~~-~~----~~~r~~k~e~e~~~~f---D~vIvNd--dle~a~~~l~~iI~~e 277 (292)
T 3tvt_A 212 VAVFIKPKSVDSVMEMNRRMTEEQA-KK----TYERAIKMEQEFGEYF---TGVVQGD--TIEEIYSKVKSMIWSQ 277 (292)
T ss_dssp EEEEECCSCHHHHHHTCTTSCTTHH-HH----HHHHHHHHHHHHTTTC---SEEECCS--SHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHhCCCchhH-HH----HHHHHHHHHHhhhhhC---CEEEECc--CHHHHHHHHHHHHHHh
Confidence 57888875 6677777766654321 11 1111223333343322 2555544 3899999999999754
No 380
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.70 E-value=0.0031 Score=61.78 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~ 80 (259)
.+++|+||+||||||+.+.++-
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999853
No 381
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.70 E-value=0.0062 Score=46.59 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+.+.|..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 499999999999999999875
No 382
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.69 E-value=0.0063 Score=46.07 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy16563 61 IVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~ 80 (259)
|+|.|.+|+||||+.+.|..
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 99999999999999999874
No 383
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.69 E-value=0.0063 Score=46.65 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
-|+|.|++|+||||+.+.|...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999988753
No 384
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.68 E-value=0.0057 Score=53.60 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
+.+|.|++||||||+...|.-.+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999988553
No 385
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.68 E-value=0.0048 Score=52.55 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy16563 61 IVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~ 80 (259)
|+|.|++|+||||+.+.|..
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 79999999999999999864
No 386
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.68 E-value=0.0067 Score=52.97 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
++.|.|++||||||++..++..+.
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 499999999999999999998753
No 387
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.68 E-value=0.0065 Score=45.85 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy16563 61 IVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~ 80 (259)
|+|.|.+|+||||+.+.|..
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 99999999999999999875
No 388
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.68 E-value=0.0074 Score=49.18 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+++++|++|+||||.+-.++.++..
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHh
Confidence 5999999999999999988887753
No 389
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.68 E-value=0.0065 Score=46.02 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~ 81 (259)
|+|.|.+|+||||+.+.|...
T Consensus 9 i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 999999999999999998754
No 390
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.68 E-value=0.0065 Score=46.08 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+.+.|..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 399999999999999998875
No 391
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.66 E-value=0.0078 Score=48.12 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.+.+|.|++||||||+...|.-.++.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 35999999999999999999877765
No 392
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.65 E-value=0.0063 Score=46.12 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy16563 61 IVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~ 80 (259)
|+|.|.+|+||||+.+.|..
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 99999999999999998874
No 393
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.65 E-value=0.0057 Score=55.40 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=22.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
+.|.|++|+|||++++.|++.+..
T Consensus 204 ~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHHS
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh
Confidence 889999999999999999999854
No 394
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.64 E-value=0.002 Score=51.06 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy16563 61 IVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~ 80 (259)
|+|.|++|+||||+.+.+..
T Consensus 28 i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 28 LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEETTSSHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 99999999999999998853
No 395
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.63 E-value=0.015 Score=48.84 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~ 80 (259)
.+.|+|.|.+|+||||+.+.|..
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g 48 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVG 48 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHT
T ss_pred CCeEEEEeCCCCCHHHHHHHHHC
Confidence 45699999999999999999964
No 396
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.63 E-value=0.0064 Score=46.36 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 399999999999999998864
No 397
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.62 E-value=0.014 Score=49.68 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~ 83 (259)
|.|.|++|+|||++|+.+++...
T Consensus 28 vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 28 VLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp EEEESCTTSCHHHHHHHHHHHSS
T ss_pred EEEECCCCchHHHHHHHHHHhCc
Confidence 89999999999999999999653
No 398
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.62 E-value=0.0061 Score=46.08 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=18.2
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVA 79 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~ 79 (259)
-|+|.|.+|+||||+.+.|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 39999999999999998885
No 399
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.62 E-value=0.0066 Score=46.05 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy16563 61 IVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~ 80 (259)
|+|.|.+|+||||+.+.|..
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 99999999999999998863
No 400
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.61 E-value=0.0069 Score=46.37 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.-|+|.|.+|+||||+.+.|...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34999999999999999998764
No 401
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.61 E-value=0.008 Score=51.45 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
++++|.|+.|+||||+++.+++.++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~ 57 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLP 57 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 359999999999999999999987543
No 402
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.57 E-value=0.0076 Score=45.56 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+.+.|..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 399999999999999999875
No 403
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.57 E-value=0.0074 Score=46.92 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.|+|.|.+|+||||+++.|...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4999999999999999999753
No 404
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.55 E-value=0.0096 Score=46.39 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
-|+|.|.+|+||||+.+.|...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999998764
No 405
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.53 E-value=0.0083 Score=55.12 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=25.4
Q ss_pred cccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
...+|.. ++|.|++||||||+++.++....
T Consensus 277 ~i~~G~i--~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 277 GFFKDSI--ILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp SEESSCE--EEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCcE--EEEEeCCCCCHHHHHHHHHHHHH
Confidence 3566665 99999999999999999998654
No 406
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=95.53 E-value=0.31 Score=41.93 Aligned_cols=70 Identities=11% Similarity=0.256 Sum_probs=37.7
Q ss_pred EEEEEecC-HHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563 178 LVIYLTVS-EAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPM 254 (259)
Q Consensus 178 lvI~L~a~-~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~~ 254 (259)
+.||+..| .+++.+|+..||.. .+..+...++-.+.....|.... + ++|.++ ++++.++++.++|..+..
T Consensus 253 i~IFI~PPS~eeLe~RL~~RGt~--~~~rl~~al~~ae~E~~~~~~~F--D-yvIVND--dLe~A~~~L~~iI~~~~~ 323 (337)
T 4dey_A 253 IVVYVKISSPKVLQRLIKSRGKS--QAKHLNVQMVAADKLAQCPPELF--D-VILDEN--QLEDACEHLADYLEAYWK 323 (337)
T ss_dssp EEEEECCSCHHHHHHHHHTTCHH--HHTTHHHHHHHHHHHHHSCGGGC--S-EEECCS--SHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHhCCch--HHHHHHHHHHHHHHHHhhCcccC--C-EEEECC--CHHHHHHHHHHHHHHHHh
Confidence 46777765 79999999999852 11111111111111111111111 2 444443 389999999999977643
No 407
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.52 E-value=0.0078 Score=46.48 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+.+.|..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 399999999999999999975
No 408
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.52 E-value=0.025 Score=54.29 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+.|.||+|+|||++|+.|++.+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 399999999999999999999973
No 409
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.51 E-value=0.0069 Score=50.55 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.|+|.|++||||||+.+.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4999999999999999999754
No 410
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.51 E-value=0.008 Score=46.55 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+++.|..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999999875
No 411
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.50 E-value=0.0083 Score=45.51 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
.|+|.|.+|+||||+.+.|..
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999999864
No 412
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.48 E-value=0.009 Score=51.41 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
++.|.|++|+||||++..++...+..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~G~~ 150 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEALGGK 150 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCC
Confidence 48999999999999999999874433
No 413
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.47 E-value=0.0029 Score=61.99 Aligned_cols=32 Identities=16% Similarity=0.036 Sum_probs=26.2
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHH
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTV 78 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l 78 (259)
.+++.+..+..|.. ++|.|++||||||+++.|
T Consensus 657 ~Lk~Vsl~I~~Gei--vaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 657 NLRGIDVSFPLGVL--TSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp TCCSEEEEEESSSE--EEEECSTTSSHHHHHTTT
T ss_pred cccCceEEECCCCE--EEEEcCCCCCHHHHHHHH
Confidence 35556666777776 999999999999999985
No 414
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.47 E-value=0.0086 Score=45.14 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~ 81 (259)
|+|.|.+|+||||+.+.+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999754
No 415
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.47 E-value=0.014 Score=51.09 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.++|+|.|++||||||+.+.|...
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 566999999999999999999753
No 416
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.47 E-value=0.0085 Score=45.77 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+.+.|..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 499999999999999998874
No 417
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.47 E-value=0.0087 Score=51.11 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=22.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+++|.|+.|+||||+++.+++..+
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEECCCcCCHHHHHHHHHHHcC
Confidence 499999999999999999998875
No 418
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.46 E-value=0.0088 Score=52.08 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=23.0
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+|.. +.|.|++||||||++..++...
T Consensus 58 l~~G~i--v~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 58 LPRGRV--IEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp EETTSE--EEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCeE--EEEECCCCCCHHHHHHHHHHHH
Confidence 344444 9999999999999999998764
No 419
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.46 E-value=0.0085 Score=46.75 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.-|+|.|.+|+||||+.+.|...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 34999999999999999988763
No 420
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.45 E-value=0.0075 Score=46.15 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~ 80 (259)
+-|+|.|.+|+||||+++.|..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3499999999999999988853
No 421
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.45 E-value=0.0089 Score=46.26 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+.+.|..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 389999999999999998865
No 422
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.43 E-value=0.0084 Score=51.01 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.|+|.|++|+||||+.+.|...
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4999999999999999999754
No 423
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.42 E-value=0.009 Score=45.61 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.-|+|.|.+|+||||+.+.|...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 34999999999999999998754
No 424
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.42 E-value=0.0062 Score=54.40 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~ 81 (259)
|+|.|++||||||+++.|...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 799999999999999999764
No 425
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.41 E-value=0.0091 Score=45.94 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
-|+|.|.+|+||||+++.|...
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4999999999999999998753
No 426
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.40 E-value=0.0091 Score=46.28 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
-|+|.|.+|+||||+.+.|...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3999999999999999998763
No 427
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.37 E-value=0.0094 Score=46.00 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
-|+|.|.+|+||||+++.|...
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999998753
No 428
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.37 E-value=0.0095 Score=49.47 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
+.|+|.|.+||||||+.+.|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 45999999999999999999654
No 429
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.36 E-value=0.009 Score=45.69 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+.+.|..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 399999999999999999874
No 430
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.35 E-value=0.0086 Score=48.81 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~ 80 (259)
+.|+|.|.+|+||||+++.|..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHcC
Confidence 4599999999999999998865
No 431
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.35 E-value=0.0099 Score=45.55 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+.+.|..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 499999999999999999865
No 432
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.34 E-value=0.014 Score=50.78 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHH
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~ 80 (259)
..|.|+|.|.+||||||+.+.|..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCcHHHHHHHHhC
Confidence 356799999999999999999976
No 433
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.33 E-value=0.011 Score=50.56 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=24.5
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+|.. ++|.|++|+||||++..++....
T Consensus 65 l~~G~l--~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 65 YKRRNF--VLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp BCTTCE--EEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcE--EEEEeCCCCCHHHHHHHHHHHHH
Confidence 455555 99999999999999999997654
No 434
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.32 E-value=0.0089 Score=57.62 Aligned_cols=29 Identities=31% Similarity=0.627 Sum_probs=26.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKASLKST 89 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~ 89 (259)
|.|.||+|||||.+|+.+|..++..++..
T Consensus 514 vLl~GPPGtGKT~lAkaiA~e~~~~f~~v 542 (806)
T 3cf2_A 514 VLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CEEESSTTSSHHHHHHHHHHTTTCEEEEC
T ss_pred EEEecCCCCCchHHHHHHHHHhCCceEEe
Confidence 89999999999999999999999887643
No 435
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.31 E-value=0.01 Score=46.26 Aligned_cols=22 Identities=18% Similarity=0.037 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~ 80 (259)
.-|+|.|.+|+||||+++.+..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3499999999999999987765
No 436
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.30 E-value=0.01 Score=45.49 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+.+.|..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 499999999999999998875
No 437
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.29 E-value=0.0088 Score=57.46 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
+++|+||+||||||+.+.++...
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhhh
Confidence 59999999999999999998754
No 438
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.27 E-value=0.011 Score=45.56 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy16563 61 IVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~ 80 (259)
|+|.|.+|+||||+.+.|..
T Consensus 8 i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 99999999999999998864
No 439
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.27 E-value=0.011 Score=45.61 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.|+|.|.+|+||||+.+.|...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999998753
No 440
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.27 E-value=0.0089 Score=47.77 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 57 KYPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 57 ~~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
..+.|+|.|.+|+||||+.+.|...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3456999999999999999988654
No 441
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.27 E-value=0.0028 Score=62.00 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=26.6
Q ss_pred cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHH
Q psy16563 45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTV 78 (259)
Q Consensus 45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l 78 (259)
.+++.+..+..|.. ++|.|++||||||+++.|
T Consensus 639 ~Lk~Vsl~I~~Gei--v~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 639 NLKNVSVKIPLGTF--VAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp SCCSEEEEEESSSE--EECCBCTTSSHHHHHTTT
T ss_pred ccccceEEEcCCCE--EEEEcCCCCCHHHHHHHH
Confidence 35566667777776 999999999999999985
No 442
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.25 E-value=0.011 Score=46.50 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.-|+|.|.+|+||||+.+.|...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 34999999999999999988753
No 443
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.25 E-value=0.014 Score=44.78 Aligned_cols=21 Identities=19% Similarity=0.083 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999988875
No 444
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.25 E-value=0.011 Score=46.27 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
-|+|.|.+|+||||+.+.|...
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999998753
No 445
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.23 E-value=0.0078 Score=51.65 Aligned_cols=23 Identities=22% Similarity=0.370 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
+.+|.|++||||||+...|.-.+
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTS
T ss_pred cEEEECCCCCcHHHHHHHHHHHh
Confidence 59999999999999999998544
No 446
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.23 E-value=0.013 Score=52.81 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=24.5
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
..+|.. ++|.|++|+||||++..++..+.
T Consensus 200 l~~G~l--iiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 200 FQRSDL--IIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp BCTTCE--EEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCE--EEEECCCCCCHHHHHHHHHHHHH
Confidence 455555 99999999999999999998754
No 447
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.22 E-value=0.0098 Score=46.12 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
..|+|.|.+|+||||+.+.|...
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 34999999999999999988653
No 448
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.22 E-value=0.011 Score=45.37 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
.|+|.|.+|+||||+.+.|..
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 499999999999999998874
No 449
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.21 E-value=0.012 Score=47.75 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=22.0
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
..+|.. +.|.|++|+||||++..++..
T Consensus 27 l~~G~l--~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 27 FPEGTT--VLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EETTCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeE--EEEEeCCCCCHHHHHHHHHHH
Confidence 455555 999999999999999887653
No 450
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.20 E-value=0.011 Score=45.86 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~ 80 (259)
.-|+|.|.+|+||||+.+.|..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3499999999999999999865
No 451
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.19 E-value=0.0098 Score=46.21 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
-|+|.|.+|+||||+.+.|...+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 499999999999999988876544
No 452
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.18 E-value=0.012 Score=46.44 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~ 80 (259)
.-|+|.|.+|+||||+++.|..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3499999999999999999875
No 453
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.18 E-value=0.012 Score=45.86 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~ 80 (259)
.-|+|.|.+|+||||+++.|..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 3499999999999999999875
No 454
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.17 E-value=0.0021 Score=62.23 Aligned_cols=34 Identities=18% Similarity=0.065 Sum_probs=27.0
Q ss_pred CCCCCCcccCCCCCeEEEEcCCCCcHHHHHHH-HHHH
Q psy16563 46 NDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQT-VAKK 81 (259)
Q Consensus 46 ~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~-l~~~ 81 (259)
+++.+..+..|.. ++|.|++||||||+++. |...
T Consensus 513 L~~vsl~i~~Gei--v~I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 513 LDNLDVRFPLGVM--TSVTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp EEEEEEEEESSSE--EEEECCTTSSHHHHCCCCCHHH
T ss_pred cccceEEEcCCCE--EEEEcCCCcCHHHHHHHHHHHH
Confidence 4555667777776 99999999999999996 5543
No 455
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.15 E-value=0.012 Score=46.32 Aligned_cols=22 Identities=23% Similarity=0.367 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.|+|.|.+|+||||+.+.|...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4999999999999999998653
No 456
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.15 E-value=0.012 Score=45.94 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+.+.|..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 499999999999999999875
No 457
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.15 E-value=0.012 Score=45.86 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.-|+|.|.+|+||||+++.|...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 34999999999999999998764
No 458
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.13 E-value=0.01 Score=45.43 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
-|+|.|.+|+||||+.+.+...
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3999999999999999998763
No 459
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.13 E-value=0.012 Score=46.03 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
-|+|.|.+|+||||+.+.|...
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999998763
No 460
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.12 E-value=0.016 Score=51.19 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=25.6
Q ss_pred cccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
...+|.. ++|.|++|+||||+++.|++...
T Consensus 170 pi~rGQr--~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 170 PIGRGQR--GLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp CCBTTCE--EEEECCSSSSHHHHHHHHHHHHH
T ss_pred eecCCcE--EEEecCCCCChhHHHHHHHHHHh
Confidence 3555665 99999999999999999999864
No 461
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.12 E-value=0.011 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.+.+|.||+||||||+..++.--+.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~l~ 48 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3589999999999999998855443
No 462
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.12 E-value=0.014 Score=46.34 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
+.|+|.|.+|+||||+...|...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34999999999999999998764
No 463
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.12 E-value=0.013 Score=52.29 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
.+++|.|++||||||+.+.+.-.++.
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 35999999999999999999876654
No 464
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.11 E-value=0.008 Score=46.29 Aligned_cols=21 Identities=33% Similarity=0.475 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVA 79 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~ 79 (259)
..|+|.|++|+||||+.+.+.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 349999999999999998875
No 465
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.10 E-value=0.011 Score=49.47 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
.|+|.|.+||||||+.+.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 499999999999999999975
No 466
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.10 E-value=0.013 Score=45.59 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~ 80 (259)
.-|+|.|.+|+||||+.+.|..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3499999999999999998865
No 467
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.09 E-value=0.015 Score=51.51 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~ 80 (259)
..|+|.|++|+||||+.+.|..
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 3599999999999999999987
No 468
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.07 E-value=0.013 Score=45.66 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+.+.|..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 499999999999999998875
No 469
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.07 E-value=0.013 Score=46.50 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
-|+|.|.+|+||||+++.|...
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4999999999999999988753
No 470
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.06 E-value=0.013 Score=45.53 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+.+.|..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 499999999999999999875
No 471
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.05 E-value=0.013 Score=45.99 Aligned_cols=22 Identities=32% Similarity=0.286 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~ 80 (259)
.-|+|.|.+|+||||+++.|..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4499999999999999999865
No 472
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=95.04 E-value=0.13 Score=46.39 Aligned_cols=24 Identities=8% Similarity=-0.024 Sum_probs=18.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
...|+|.||+|+| +.+.|.+....
T Consensus 224 ~r~iVlsGPsG~G---l~~~Ll~~~p~ 247 (468)
T 3shw_A 224 LRPVTIFGPIADV---AREKLAREEPD 247 (468)
T ss_dssp CCCEEEESTTHHH---HHHHHHHHCTT
T ss_pred CCEEEEECCCHHH---HHHHHHHhCCC
Confidence 3459999999999 77777776554
No 473
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.04 E-value=0.011 Score=56.69 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~ 83 (259)
+.|.|++|+||||+++.|++.+.
T Consensus 204 vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999999984
No 474
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=95.03 E-value=0.01 Score=58.06 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=23.2
Q ss_pred CCCCCCcccCCCCCeEEEEcCCCCcHHHHH
Q psy16563 46 NDQDSGVGDDRKYPLIVFEGLDGCGKSHTS 75 (259)
Q Consensus 46 ~~~~~~~~~~~~~~ii~~~g~~g~gkst~~ 75 (259)
+++.+..+..|.+ ++|.|++||||||++
T Consensus 600 Lk~Vsl~I~~Gei--v~I~G~SGSGKSTLl 627 (916)
T 3pih_A 600 LKNIDVEIPLGVF--VCVTGVSGSGKSSLV 627 (916)
T ss_dssp CCSEEEEEESSSE--EEEECSTTSSHHHHH
T ss_pred ccccceEEcCCcE--EEEEccCCCChhhhH
Confidence 5556666777776 999999999999997
No 475
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.03 E-value=0.014 Score=45.53 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
-|+|.|.+|+||||+.+.+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4999999999999999888753
No 476
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.01 E-value=0.012 Score=45.43 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~ 80 (259)
..|+|.|.+|+||||+.+.+..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3499999999999999998864
No 477
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.01 E-value=0.017 Score=45.83 Aligned_cols=25 Identities=24% Similarity=0.092 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAKKLK 83 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~~~~ 83 (259)
.++++.|+.||||||.+-.++.++.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3599999999999999999988874
No 478
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.01 E-value=0.013 Score=51.25 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
+.+|.|++||||||+.+.+.-
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 599999999999999999975
No 479
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.00 E-value=0.014 Score=46.05 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+.+.|..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999998865
No 480
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.00 E-value=0.0082 Score=59.50 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTV 78 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l 78 (259)
.+++|+||+||||||+.+.+
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHH
Confidence 35999999999999999998
No 481
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.00 E-value=0.014 Score=45.26 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.|+|.|.+|+||||+.+.|...
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999998753
No 482
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.99 E-value=0.014 Score=46.41 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
-|+|.|.+|+||||+++.|...
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999998763
No 483
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.98 E-value=0.013 Score=45.97 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+++.|..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999998864
No 484
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.96 E-value=0.014 Score=45.31 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
.|+|.|.+|+||||+.+.|..
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 399999999999999999874
No 485
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.96 E-value=0.014 Score=46.15 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+.+.|..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 499999999999999998875
No 486
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.95 E-value=0.015 Score=45.39 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
-|+|.|.+|+||||+.+.+...
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999988753
No 487
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.92 E-value=0.011 Score=46.58 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVA 79 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~ 79 (259)
..|+|.|.+|+||||+.+.|.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 459999999999999998874
No 488
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.92 E-value=0.016 Score=49.81 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=23.4
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
..+|. ++.|.|++||||||++..++...
T Consensus 104 l~~G~--i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 104 IETRT--MTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EETTS--EEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCc--EEEEECCCCCCHhHHHHHHHHHH
Confidence 44444 49999999999999999999864
No 489
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.90 E-value=0.045 Score=47.56 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 58 YPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 58 ~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
.+.|+|.|++|+||||+.+.|...
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999998754
No 490
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.90 E-value=0.014 Score=45.91 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+.+.|..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 499999999999999998864
No 491
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.90 E-value=0.015 Score=45.86 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~ 80 (259)
.-|+|.|.+|+||||+...|..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3499999999999999998874
No 492
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.89 E-value=0.014 Score=50.68 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=22.8
Q ss_pred ccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~ 81 (259)
..+|. ++.|.|++||||||++..++..
T Consensus 119 l~~G~--i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMA--ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSE--EEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCe--EEEEECCCCCCHHHHHHHHHHH
Confidence 44444 4999999999999999999986
No 493
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.88 E-value=0.014 Score=48.13 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~ 80 (259)
..|+|.|.+|+||||+.+.|..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 3499999999999999999874
No 494
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.86 E-value=0.012 Score=50.49 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=22.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKAS 85 (259)
Q Consensus 56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~~ 85 (259)
|.. |+|.|++|+||||++..|.++ |..
T Consensus 144 g~~--vl~~G~sG~GKSt~a~~l~~~-g~~ 170 (314)
T 1ko7_A 144 GVG--VLITGDSGIGKSETALELIKR-GHR 170 (314)
T ss_dssp TEE--EEEEESTTSSHHHHHHHHHHT-TCE
T ss_pred CEE--EEEEeCCCCCHHHHHHHHHhc-CCc
Confidence 445 999999999999999999885 443
No 495
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.86 E-value=0.016 Score=50.62 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKKL 82 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~~ 82 (259)
++.|.|++|+||||++..++...
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999998765
No 496
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.84 E-value=0.014 Score=45.54 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+.+.|..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999999864
No 497
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.82 E-value=0.028 Score=53.83 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=22.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563 61 IVFEGLDGCGKSHTSQTVAKKLKA 84 (259)
Q Consensus 61 i~~~g~~g~gkst~~~~l~~~~~~ 84 (259)
++|.|++|+||||+++.|++.+..
T Consensus 210 vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 210 PLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999998853
No 498
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.82 E-value=0.017 Score=45.54 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~ 80 (259)
-|+|.|.+|+||||+.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 499999999999999998875
No 499
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.82 E-value=0.017 Score=45.33 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy16563 60 LIVFEGLDGCGKSHTSQTVAKK 81 (259)
Q Consensus 60 ii~~~g~~g~gkst~~~~l~~~ 81 (259)
-|+|.|.+|+||||+.+.+...
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3999999999999999988753
No 500
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.82 E-value=0.014 Score=45.04 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy16563 59 PLIVFEGLDGCGKSHTSQTVAK 80 (259)
Q Consensus 59 ~ii~~~g~~g~gkst~~~~l~~ 80 (259)
..|+|.|.+|+||||+.+.|..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4599999999999999999875
Done!