RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16563
(259 letters)
>gnl|CDD|216936 pfam02223, Thymidylate_kin, Thymidylate kinase.
Length = 186
Score = 82.0 bits (203), Expect = 4e-19
Identities = 50/199 (25%), Positives = 80/199 (40%), Gaps = 29/199 (14%)
Query: 63 FEGLDGCGKSHTSQTVAKKLKASLKS---TPPSSIMSLREKFDAHDSLLR---RAYYSLG 116
EGLDG GK+ ++ + ++LK T + EK + LLR + +
Sbjct: 1 IEGLDGAGKTTQAELLKERLKEQGIKVVLTREPGGTPIGEKIR--ELLLRNEELSPLTEA 58
Query: 117 NYIAA-------QDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168
AA + IK L Q + V+ DR+ S+ AY L L + S
Sbjct: 59 LLFAADRIEHLEEKIKPALKQGKTVICDRYLFSSIAY---QGAAGGLGLDL------VLS 109
Query: 169 WPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNP 226
D KPDL L V + L+RL RR L+E E ++ R++ +
Sbjct: 110 LNPDVPGPKPDLTFLLDVDPEVALKRLRRRG--ELDEFEFEQLDFLRKVRERYLELAKDD 167
Query: 227 ELVFVDNSEKSVHESSNDI 245
E + + ++ S+ E +I
Sbjct: 168 ERILIIDASNSIEEVHEEI 186
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as
thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de novo
or salvage biosynthesis of thymidine triphosphate (TTP).
Length = 200
Score = 67.3 bits (165), Expect = 1e-13
Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 32/166 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKF------DAHDSLLRRAYY 113
IVFEG+DG GK+ T+ + L L++ ++ RE + LL
Sbjct: 2 FIVFEGIDGAGKT----TLIELLAERLEARGYEVVL-TREPGGTPIGEAIRELLLDPEDE 56
Query: 114 SLGN------YIAAQDIKQDLQKQP-------VVMDRFWHSTSAY-GMANELVKNSDLKL 159
+ + A + + +P V+ DRF S+ AY G L
Sbjct: 57 KMDPRAELLLFAADRAQHVEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLG------- 109
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE 205
+ + +KPDL I L + + L R+ R +E E
Sbjct: 110 EALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQE 155
>gnl|CDD|184430 PRK13975, PRK13975, thymidylate kinase; Provisional.
Length = 196
Score = 66.3 bits (162), Expect = 3e-13
Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS--------IMSLREKFDAHDSLLRRAY 112
IVFEG+DG GK+ ++ +A+KL A P I+S + +LL
Sbjct: 5 IVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALL---- 60
Query: 113 YSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKD 172
++ ++I++DL+K+ VV DR+ +S+ AY + ++D IYS +
Sbjct: 61 FAADRVEHVKEIEEDLKKRDVVCDRYVYSSIAYQSVQGI----------DEDFIYSINRY 110
Query: 173 LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL-LTTIYRNMNNPELVFV 231
KPDLV L V L+R+ R E+ E K + + L L + M + +
Sbjct: 111 AKKPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEKYLELANNEKFMPKYGFIVI 170
Query: 232 DNSEKSVHESSNDIVELIHNLP 253
D + KS+ E N+I+ I +
Sbjct: 171 DTTNKSIEEVFNEILNKIKDKI 192
>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and
metabolism].
Length = 208
Score = 64.6 bits (158), Expect = 1e-12
Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 45/219 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK-------------STPP-----SSIMSLREKF 101
IV EG+DG GK+ T A+ LK L+ TP +++ EK
Sbjct: 5 FIVIEGIDGAGKT----TQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKL 60
Query: 102 DAHDSLL----RRAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAY-GMANELVKNS 155
L RA + + IK L++ + V+ DR+ S+ AY G L
Sbjct: 61 SPKAEALLFAADRAQH------LEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGL---- 110
Query: 156 DLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL 215
D + + +KPDL +YL V + L+R+ +R + E + + ++
Sbjct: 111 ---DLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGE-LRDRFEKEDDEFLEKV 166
Query: 216 LTTIYR--NMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
++ +D S + + E +I++++
Sbjct: 167 REGYLELAAKFPERIIVIDAS-RPLEEVHEEILKILKER 204
>gnl|CDD|161676 TIGR00041, DTMP_kinase, thymidylate kinase. Function:
phosphorylation of DTMP to form DTDP in both de novo and
salvage pathways of DTTP synthesis. Catalytic activity:
ATP + thymidine 5'-phosphate = ADP + thymidine
5'-diphosphate [Purines, pyrimidines, nucleosides, and
nucleotides, Nucleotide and nucleoside
interconversions].
Length = 195
Score = 64.3 bits (157), Expect = 1e-12
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 25/201 (12%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSSIM--SLRE----KFDAHDSLL 108
IV EG+DG GK+ + + K L+ + P + + +RE + D +
Sbjct: 5 FIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDK 64
Query: 109 RRAYYSLGN--YIAAQDIKQDL-QKQPVVMDRFWHSTSAY-GMANELVKNSDLKLPDEDD 164
A + IK L + + V+ DR+ S+ AY G A + ++ L+L +
Sbjct: 65 AEALLFAADRHEHLEDKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNE--- 121
Query: 165 DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN 224
D PDL IYL + + L+RL RK L+ E +K F ++ +
Sbjct: 122 ---DALGD--MPDLTIYLDIDPEVALERL--RKRGELDREEFEKLDFFEKVRQRYLELAD 174
Query: 225 NPELVFVDNSEKSVHESSNDI 245
+ + V ++ SV E DI
Sbjct: 175 KEKSIHVIDATNSVEEVEQDI 195
>gnl|CDD|234814 PRK00698, tmk, thymidylate kinase; Validated.
Length = 205
Score = 57.9 bits (141), Expect = 3e-10
Identities = 50/215 (23%), Positives = 81/215 (37%), Gaps = 44/215 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS-------LREKF-----DAHDSL 107
I EG+DG GKS T + LK L+ + + L EK D ++ +
Sbjct: 5 FITIEGIDGAGKS----TQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLLDPNEEM 60
Query: 108 LRRAYYSLGNYIAA------QDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLP 160
+ L + AA + IK L + + V+ DRF S+ AY L
Sbjct: 61 DDKTELLL--FYAARAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGG-------RGLD 111
Query: 161 DED-DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-----LKKNAKFRE 214
+ + + +PDL +YL V + L R+ R E E + + E
Sbjct: 112 IDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDRIEQEGLDFFERVREGYLE 171
Query: 215 LLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
L +V +D + +S+ E DI+ +I
Sbjct: 172 LA-----EKEPERIVVID-ASQSLEEVHEDILAVI 200
>gnl|CDD|238836 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family
consists of various deoxynucleoside kinases including
deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
2.7.1.21) kinases. They are key enzymes in the salvage
of deoxyribonucleosides originating from extra- or
intracellular breakdown of DNA.
Length = 193
Score = 46.1 bits (110), Expect = 3e-06
Identities = 41/176 (23%), Positives = 64/176 (36%), Gaps = 24/176 (13%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASL----KSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
IV EG G GKS ++ +A+ L + L EKF R +
Sbjct: 2 IVVEGNIGAGKSTLAKELAEHLGYEVVPEPVEPDVEGNPFL-EKFYEDPK---RWAFPFQ 57
Query: 117 NYIAAQDIKQ-------DLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED--DDIY 167
Y +KQ Q V+++R S A +K + + D ++++
Sbjct: 58 LYFLLSRLKQYKDALEHLSTGQGVILERSIFS--DRVFAEANLKEGGIMKTEYDLYNELF 115
Query: 168 SW-PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRN 222
+L+ PDLVIYL S L+R+ +R E + E L Y
Sbjct: 116 DNLIPELLPPDLVIYLDASPETCLKRIKKRGR----PEEQGIPLDYLEDLHEAYEK 167
>gnl|CDD|236133 PRK07933, PRK07933, thymidylate kinase; Validated.
Length = 213
Score = 42.7 bits (101), Expect = 6e-05
Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 37/163 (22%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS-----------TPPSSIMSLREKFD-AHDSL 107
LI EG+DG GK ++ + L+A +S + + + E H L
Sbjct: 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLA--AEALHGRHGDL 59
Query: 108 LRRAY-----YSLGNYIAAQDIKQDLQKQPVV-MDRFWHSTSAYGMANELVKNSDLKL-P 160
Y ++L A ++ L VV +DR+ S +AY A +L
Sbjct: 60 ADSVYAMATLFALDRAGARDELAGLLAAHDVVILDRYVASNAAYSAA---------RLHQ 110
Query: 161 DEDDDIYSWPKDLM-------KPDLVIYLTVSEAIRLQRLSRR 196
D D + +W +L PDL + L V + +R RR
Sbjct: 111 DADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRR 153
>gnl|CDD|184429 PRK13973, PRK13973, thymidylate kinase; Provisional.
Length = 213
Score = 36.5 bits (85), Expect = 0.007
Identities = 52/233 (22%), Positives = 87/233 (37%), Gaps = 60/233 (25%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR---------- 110
I FEG +G GKS + +A++L+A +D L+ R
Sbjct: 6 ITFEGGEGAGKSTQIRLLAERLRA-----------------AGYDVLVTREPGGSPGAEA 48
Query: 111 --------AYYSLGNYI------AAQD------IKQDLQKQPVVM-DRFWHSTSAY-GMA 148
A G + AA+D I+ L + +V+ DRF ST AY G+
Sbjct: 49 IRHVLLSGAAELYGPRMEALLFAAARDDHVEEVIRPALARGKIVLCDRFIDSTRAYQGVT 108
Query: 149 NELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQR-LSRRKNFTLEENELK 207
+ + L E I + + PDL + L + + L+R RR + T + E K
Sbjct: 109 GNV--DPALLAALERVAI-----NGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFE-K 160
Query: 208 KNAKFRELLTTIYRNM--NNPELVFVDNSEKSVHESSNDIVELIHNLPMFKHS 258
++ F E + + PE V ++ S + +I + + S
Sbjct: 161 EDLAFHEKRREAFLQIAAQEPERCVVIDATASPEAVAAEIWAAVDQRLLEASS 213
>gnl|CDD|172477 PRK13974, PRK13974, thymidylate kinase; Provisional.
Length = 212
Score = 35.4 bits (82), Expect = 0.017
Identities = 51/168 (30%), Positives = 73/168 (43%), Gaps = 45/168 (26%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKAS--------LKST--PPSSI--MSLRE------KF 101
IV EG+DGCGK+ ++K L +S L T P ++ SLRE K
Sbjct: 5 FIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKD 64
Query: 102 DAHDSLLRRAYYSLGNYIAAQDIKQDLQKQP-------VVMDRFWHSTSAY-GMANELVK 153
++ L Y+ AQ + + + +P V+ DRF ST AY G L
Sbjct: 65 NSPSPLAELLLYAADR---AQHVSKII--RPALENGDWVISDRFSGSTLAYQGYGRGL-- 117
Query: 154 NSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVS--EAIRLQRLSRRKNF 199
DL+L + I + + PDL +L +S E+IR RRKN
Sbjct: 118 --DLELIKNLESIATQG---LSPDLTFFLEISVEESIR-----RRKNR 155
>gnl|CDD|216657 pfam01712, dNK, Deoxynucleoside kinase. This family consists of
various deoxynucleoside kinases cytidine EC:2.7.1.74,
guanosine EC:2.7.1.113, adenosine EC:2.7.1.76 and
thymidine kinase EC:2.7.1.21 (which also phosphorylates
deoxyuridine and deoxycytosine.) These enzymes catalyze
the production of deoxynucleotide 5'-monophosphate from
a deoxynucleoside. Using ATP and yielding ADP in the
process.
Length = 146
Score = 34.2 bits (79), Expect = 0.023
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 18/140 (12%)
Query: 124 IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLM------KPD 177
+ + V+++R +S Y A L + DE+ Y D M +PD
Sbjct: 13 QLSAARDEVVILERSIYS-DRYIFAKNLYDKG--TMSDEEYKTYKELYDNMLRQLPKRPD 69
Query: 178 LVIYLTVSEAIRLQRLSRR-----KNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVD 232
L+IYL VS L+R+ +R KN L+ EL + K+ + T N ++ +D
Sbjct: 70 LIIYLKVSPETCLERIKKRGRTEEKNIELDYLELLHSEKYEKWYTK----YNASPVLVID 125
Query: 233 NSEKSVHESSNDIVELIHNL 252
+ E DI+ + +
Sbjct: 126 GDKLDFVEDEEDIMNKRNEI 145
>gnl|CDD|237574 PRK13976, PRK13976, thymidylate kinase; Provisional.
Length = 209
Score = 34.7 bits (80), Expect = 0.030
Identities = 53/223 (23%), Positives = 80/223 (35%), Gaps = 58/223 (26%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLK-------ASLKSTP-----PSSIMSLREKFDAHDSL- 107
I FEG+DG GK+ S+ +A+ L L P + L D +
Sbjct: 3 ITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKIS 62
Query: 108 -------LRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAY-----GMANELVKN 154
+RR ++ + I L Q + V+ DRF ST AY G+ L++
Sbjct: 63 ELLLFIAMRREHF-------VKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIR- 114
Query: 155 SDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214
L D D Y PD+ L + + L R + E +L+ K R+
Sbjct: 115 ---DLNDLVVDKY--------PDITFVLDIDIELSLSRADKNG---YEFMDLEFYDKVRK 160
Query: 215 LLTTIYRNMNNPELVFVDNSEK-------SVHESSNDIVELIH 250
I + V K SVH +IV+L+H
Sbjct: 161 GFREIVIKNPHRCHVITCIDAKDNIEDINSVH---LEIVKLLH 200
>gnl|CDD|216360 pfam01202, SKI, Shikimate kinase.
Length = 158
Score = 33.3 bits (77), Expect = 0.046
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPE---LVFVDNS 234
+V+YL + L+RL K L L+ ELL ++ E + VD
Sbjct: 87 IVVYLDADPEVLLERLKADKTRPL----LQDKDPEEELLELLFERCPLYEEAADIVVDTD 142
Query: 235 EKSVHESSNDIVELIH 250
EKS E + +I+E +
Sbjct: 143 EKSPEEVAEEILEALE 158
>gnl|CDD|178512 PLN02924, PLN02924, thymidylate kinase.
Length = 220
Score = 33.9 bits (78), Expect = 0.050
Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 40/147 (27%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDAHDSL 107
LIV EGLD GKS + LK ++T ++S L K D
Sbjct: 18 LIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDD-- 75
Query: 108 LRRAYYSLGNYIAAQDIKQDLQKQ------PVVMDRFWHSTSAYGMANELVKNSDL---K 158
RA + L + A + K+ L ++ +V+DR+ +S A+ A L DL K
Sbjct: 76 --RAIHLL--FSANRWEKRSLMERKLKSGTTLVVDRYSYSGVAFSAAKGL----DLEWCK 127
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVS 185
P+ L PDLV+YL +S
Sbjct: 128 APE---------VGLPAPDLVLYLDIS 145
>gnl|CDD|224345 COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and
metabolism].
Length = 216
Score = 33.1 bits (76), Expect = 0.10
Identities = 40/183 (21%), Positives = 71/183 (38%), Gaps = 34/183 (18%)
Query: 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAY-----Y 113
+IV EG+ G GKS +Q +A+ L + + L Y Y
Sbjct: 5 MVIVIEGMIGAGKSTLAQALAEHLGFKVFYELV-----------EDNPFLDLFYEDPERY 53
Query: 114 SLGNYI-----AAQDIKQDLQKQPVVMDRF----WHSTSAYGMANELVKNSDLKLPDEDD 164
+ I + IK+ L + ++DR + + A + S+ K D
Sbjct: 54 AFLLQIYFLLNRFKKIKKALSDKNNILDRSIFEDYFLFAKLNFAKGTLSPSEFKYYD--- 110
Query: 165 DIYSWPKDLM-----KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTI 219
D+Y + + +PDL+IYL S L+R+++R E + +N + + L
Sbjct: 111 DLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKR-GRPFEIDNFDENKDYLKDLHRR 169
Query: 220 YRN 222
Y +
Sbjct: 170 YDD 172
>gnl|CDD|234620 PRK00081, coaE, dephospho-CoA kinase; Reviewed.
Length = 194
Score = 32.8 bits (76), Expect = 0.11
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 177 DLVIYLTVSEAIRLQRLSRRKNFTLEE 203
D V+ + +L+RL R + EE
Sbjct: 126 DRVLVVDAPPETQLERLMARDGLSEEE 152
>gnl|CDD|223315 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism].
Length = 201
Score = 32.3 bits (74), Expect = 0.17
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 177 DLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFRELL-TTIYRNMNNPELVFVDN 233
D VI + IRL+RL +R E E L E L N+ + N
Sbjct: 125 DKVIVVYAPPEIRLERLMKRDGLDEEDAEARLASQRDLEEKLALADVVIDNDGSIE---N 181
Query: 234 SEKSVHESSNDIVELIHN 251
+ + + +++ L+
Sbjct: 182 LLEQIEKLLKELLGLVLK 199
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 30.9 bits (70), Expect = 0.26
Identities = 27/142 (19%), Positives = 44/142 (30%), Gaps = 35/142 (24%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNY-I 119
I+ G G GK+ T+AK+L L LR+ + +L
Sbjct: 1 ILITGTPGSGKT----TLAKELAERLG-------DVLRDLAKENGLVLELDEEITDESKR 49
Query: 120 AAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED---DDIYSWPKDLMKP 176
+D L ++L K + E+ D + +
Sbjct: 50 LDEDKLAKLL-------------------DKLEKIIEELAEGENVIIDGHLAELELERFK 90
Query: 177 DLV-IYLTVSEAIRLQRLSRRK 197
DLV + L L+RL +R
Sbjct: 91 DLVFVVLRADPEELLERLKKRG 112
>gnl|CDD|224719 COG1806, COG1806, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 273
Score = 31.5 bits (72), Expect = 0.39
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 21/120 (17%)
Query: 142 TSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSE----AIRLQRLSRRK 197
TS Y +A + +K ++ L ED + P L L+ LT+S AIR +RL
Sbjct: 160 TSLY-LALQGIKAANYPLVPEDPEPDELPAAL--KPLLFGLTISPERLSAIREERLK--- 213
Query: 198 NFTLEENELKKNAKFR----ELLT--TIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
+L E + A EL ++R P +D + KS+ E++ I+ L+
Sbjct: 214 --SLGLRENSRYASLDQCREELAYAEALFRRNGIP---VIDVTNKSIEETAAKILALLGL 268
>gnl|CDD|168472 PRK06217, PRK06217, hypothetical protein; Validated.
Length = 183
Score = 30.8 bits (70), Expect = 0.47
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 177 DLVIYLTVSEAIRLQRLSRR 196
DLV++LT+ +RL+RL R
Sbjct: 85 DLVVFLTIPPELRLERLRLR 104
>gnl|CDD|114314 pfam05584, Sulfolobus_pRN, Sulfolobus plasmid regulatory protein.
This family consists of several plasmid regulatory
proteins from the extreme thermophilic and acidophilic
archaea Sulfolobus.
Length = 72
Score = 28.6 bits (64), Expect = 0.68
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 182 LTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYR 221
LT++E I L RLS + TLEE + K A ELL T+ R
Sbjct: 4 LTLTELI-LIRLSGKCA-TLEELQEKTGADKNELLVTLTR 41
>gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family
are found in a variety of single stranded RNA viruses.
Length = 105
Score = 28.7 bits (65), Expect = 1.1
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSI 94
I G GCGKS ++ +A+ L L S+
Sbjct: 1 IWLYGPPGCGKSTLAKYLARALLKHLGLPKKDSV 34
>gnl|CDD|238980 cd02022, DPCK, Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24)
catalyzes the phosphorylation of dephosphocoenzyme A
(dCoA) to yield CoA, which is the final step in CoA
biosynthesis.
Length = 179
Score = 29.4 bits (67), Expect = 1.2
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 166 IYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE 205
+ + L+ +V+ I+++RL +R + EE E
Sbjct: 114 FETGLEKLVDRVIVVD--APPEIQIERLMKRDGLSEEEAE 151
>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa
(IMP dehydrogenase-1), and homocystinuria
(cystathionine beta-synthase).
Length = 120
Score = 28.3 bits (64), Expect = 1.6
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 13 SLVSVLSILKSAQYSSLPEVEE---LLNIYSR 41
L+ VL +L + S+LP V+E ++++YSR
Sbjct: 11 PLIDVLDMLVERRVSALPIVDENGKVVDVYSR 42
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 27.3 bits (61), Expect = 1.8
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL 86
+I G G GKS TVAKKL L
Sbjct: 1 IIAITGGSGSGKS----TVAKKLAEQL 23
>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase.
Length = 186
Score = 28.8 bits (65), Expect = 1.9
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRR 196
+ +K D VI V + + ++RL+ R
Sbjct: 97 EYGIKLDYVIEFDVPDEVLVERLTGR 122
>gnl|CDD|234654 PRK00131, aroK, shikimate kinase; Reviewed.
Length = 175
Score = 28.6 bits (65), Expect = 2.0
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKN---AKFRELLTT---IYRNMNNPELVFV 231
V+YL S L+RL R +N L L+ N K R+L +Y + + + V
Sbjct: 99 TVVYLDASFEELLRRLRRDRNRPL----LQTNDPKEKLRDLYEERDPLYEEVAD--IT-V 151
Query: 232 DNSEKSVHESSNDIVELIHNL 252
+ +S E N+I+E +
Sbjct: 152 ETDGRSPEEVVNEILEKLEAA 172
>gnl|CDD|132720 cd02584, RNAP_II_Rpb1_C, Largest subunit (Rpb1) of Eukaryotic RNA
polymerase II (RNAP II), C-terminal domain. RNA
polymerase II (RNAP II) is a large multi-subunit complex
responsible for the synthesis of mRNA. RNAP II consists
of a 10-subunit core enzyme and a peripheral heterodimer
of two subunits. The largest core subunit (Rpb1) of
yeast RNAP II is the best characterized member of this
family. Structure studies suggest that RNAP complexes
from different organisms share a crab-claw-shape
structure. In yeast, Rpb1 and Rpb2, the largest and the
second largest subunits, each makes up one clamp, one
jaw, and part of the cleft. Rpb1 interacts with Rpb2 to
form the DNA entry and RNA exit channels in addition to
the catalytic center of RNA synthesis. The C-terminal
domain of Rpb1 makes up part of the foot and jaw
structures.
Length = 410
Score = 29.1 bits (66), Expect = 2.4
Identities = 41/189 (21%), Positives = 67/189 (35%), Gaps = 56/189 (29%)
Query: 78 VAKKLKASLKSTPPSSIMSLREKF-----DAHDSLLRRAYYSLGNYIAAQDIKQDLQKQP 132
VAK +K PS + L F A R + +L + AA +I D P
Sbjct: 73 VAKNIKT------PSLTVYLEPGFAKDEEKAKKIQSRLEHTTLKDVTAATEIYYD----P 122
Query: 133 VVM------DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSE 186
D+ + S + PDED + L
Sbjct: 123 DPQNTVIEEDKEF-------------VESYFEFPDEDVEQDRLSPWL------------- 156
Query: 187 AIRLQRLSRR----KNFTLEENELKKNAKFRELLTTIYRNMNNPELVF---VDNSEKSVH 239
+R++ L R+ K ++E+ K +F++ L I+ + N +LV + N ++
Sbjct: 157 -LRIE-LDRKKMTDKKLSMEQIAKKIKEEFKDDLNVIFSDDNAEKLVIRIRIINDDEEKE 214
Query: 240 ESSNDIVEL 248
E S D V L
Sbjct: 215 EDSEDDVFL 223
>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 28.2 bits (64), Expect = 2.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEE 203
DL I+L +R +R++ R+ ++EE
Sbjct: 92 ADLKIWLKAPLEVRAERIAEREGISVEE 119
>gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional.
Length = 175
Score = 28.4 bits (64), Expect = 2.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 63 FEGLDGCGKSHTSQTVAKKLKA 84
F GL G GK+ ++ +A+KL+
Sbjct: 9 FTGLSGAGKTTIARALAEKLRE 30
>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain present
in srGAPs. srGAPs are components of the intracellular
part of Slit-Robo signalling pathway that is important
for axon guidance and cell migration. srGAPs contain an
N-terminal FCH domain, a central RhoGAP domain and a
C-terminal SH3 domain; this SH3 domain interacts with
the intracellular proline-rich-tail of the Roundabout
receptor (Robo). This interaction with Robo then
activates the rhoGAP domain which in turn inhibits Cdc42
activity. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 188
Score = 28.2 bits (63), Expect = 3.4
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKF 101
+P FE L C K +++ L + P S I+ +R F
Sbjct: 91 FPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLF 134
>gnl|CDD|223360 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 222
Score = 28.3 bits (64), Expect = 3.4
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 18/87 (20%)
Query: 177 DLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTI----YRNMNN------- 225
+L I+LT S R +R R K + + F ELL I R+ N
Sbjct: 139 ELKIFLTASPEERAER--RYK----QLQAKGFSEVFEELLAEIKERDERDSNRAVAPLKP 192
Query: 226 -PELVFVDNSEKSVHESSNDIVELIHN 251
+ + +D S S+ E I+ELI
Sbjct: 193 AEDALLLDTSSLSIEEVVEKILELIRQ 219
>gnl|CDD|233355 TIGR01313, therm_gnt_kin, carbohydrate kinase, thermoresistant
glucokinase family. This model represents a subfamily
of proteins that includes thermoresistant and
thermosensitve isozymes of gluconate kinase
(gluconokinase) in E. coli and other related proteins;
members of this family are often named by similarity to
the thermostable isozyme. These proteins show homology
to shikimate kinases and adenylate kinases but not to
gluconate kinases from the FGGY family of carbohydrate
kinases.
Length = 163
Score = 27.8 bits (62), Expect = 3.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKA 84
V G+ G GKS + +A +L A
Sbjct: 1 FVLMGVAGSGKSTIASALAHRLGA 24
>gnl|CDD|223775 COG0703, AroK, Shikimate kinase [Amino acid transport and
metabolism].
Length = 172
Score = 27.9 bits (63), Expect = 3.8
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT---IYRNMNNPELVFVDNS 234
+V+YL +RL R + L + E + ELL +YR + + F+ ++
Sbjct: 97 IVVYLDAPFETLYERLQRDRKRPLLQTE-DPREELEELLEERQPLYREVAD----FIIDT 151
Query: 235 EKSVHESSNDIVELIH 250
+ E +I+E +
Sbjct: 152 DDRSEEVVEEILEALE 167
>gnl|CDD|224511 COG1595, RpoE, DNA-directed RNA polymerase specialized sigma
subunit, sigma24 homolog [Transcription].
Length = 182
Score = 28.1 bits (63), Expect = 3.8
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 95 MSLREKFDAH-DSLLRRAYYSLGNYIAAQDIKQD 127
+ E + L R A LG+ A+D+ Q+
Sbjct: 15 AAFEELLERLRPRLRRLARRLLGDRADAEDLVQE 48
>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 28.0 bits (63), Expect = 3.9
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 177 DLVIYLTVSEAIRLQRLSRRK 197
D I+L + +RL RK
Sbjct: 162 DFTIFLDAPAEVLRERLVARK 182
>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP)
to adenosine monophosphates (AMP) and to yield adenosine
diphosphates (ADP). This enzyme is required for the
biosynthesis of ADP and is essential for homeostasis of
adenosine phosphates.
Length = 194
Score = 28.0 bits (63), Expect = 4.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRR 196
+ +KPD VI L V + + ++R+ R
Sbjct: 100 DEGIKPDKVIELDVPDEVLIERILGR 125
>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits.
Length = 150
Score = 27.6 bits (62), Expect = 4.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA 84
+IV G+ G GKS + +A++L A
Sbjct: 1 IIVVMGVSGSGKSTVGKALAERLGA 25
>gnl|CDD|215073 PLN00142, PLN00142, sucrose synthase.
Length = 815
Score = 28.4 bits (64), Expect = 4.2
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 30 PEVEELLNIYSRINETNDQDSGVGDDRKYPLI 61
P +EELL YS E ND+ G DRK P+I
Sbjct: 549 PSIEELL--YS--PEQNDEHIGYLKDRKKPII 576
>gnl|CDD|180682 PRK06761, PRK06761, hypothetical protein; Provisional.
Length = 282
Score = 27.8 bits (62), Expect = 5.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKL 82
LI+ EGL G GKS T++ + L
Sbjct: 5 LIIIEGLPGFGKSTTAKMLNDIL 27
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 28.1 bits (63), Expect = 5.5
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 181 YLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
++T EA+ LQRL ++ L E K +F ++ + + + L + S
Sbjct: 318 FITNEEALILQRLKKKFGLKLINEEALKFQQFLKVFSEVSGKSYSANLEDIKTS 371
>gnl|CDD|222307 pfam13671, AAA_33, AAA domain. This family of domains contain
only a P-loop motif, that is characteristic of the AAA
superfamily. Many of the proteins in this family are
just short fragments so there is no Walker B motif.
Length = 143
Score = 27.3 bits (61), Expect = 5.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASL 86
LI+ GL G GKS ++ + ++L A +
Sbjct: 1 LILMVGLPGSGKSTFARRLLRELGAVV 27
>gnl|CDD|237966 PRK15434, PRK15434, GDP-mannose mannosyl hydrolase NudD;
Provisional.
Length = 159
Score = 27.4 bits (61), Expect = 5.8
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 152 VKNSDLKLPDEDDDIYSW--PKDLMKPDLV 179
V DL LPDE D Y W P L+ D V
Sbjct: 111 VAEEDLLLPDEQHDDYRWLTPDALLASDNV 140
>gnl|CDD|235858 PRK06762, PRK06762, hypothetical protein; Provisional.
Length = 166
Score = 26.9 bits (60), Expect = 7.9
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 59 PLIVFEGLDGCGKSHTSQTVAKKLKASL 86
LI+ G G GK+ T+AK+L+ L
Sbjct: 3 TLIIIRGNSGSGKT----TIAKQLQERL 26
>gnl|CDD|237393 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase;
Provisional.
Length = 512
Score = 27.2 bits (61), Expect = 9.3
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 35 LLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK 83
LL I R T D+ R+ P+I +G G GKS ++ VAKKL
Sbjct: 262 LLAIAVRCGSTRLIDNVFLMKRQ-PIIAIDGPAGAGKSTVTRAVAKKLG 309
>gnl|CDD|233369 TIGR01351, adk, adenylate kinase. Adenylate kinase (EC 2.7.4.3)
converts ATP + AMP to ADP + ADP, that is, uses ATP as a
phosphate donor for AMP. Most members of this family are
known or believed to be adenylate kinase. However, some
members accept other nucleotide triphosphates as donors,
may be unable to use ATP, and may fail to complement
adenylate kinase mutants. An example of a
nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10)
is a GTP:AMP phosphotransferase. This family is
designated subfamily rather than equivalog for this
reason [Purines, pyrimidines, nucleosides, and
nucleotides, Nucleotide and nucleoside
interconversions].
Length = 210
Score = 26.8 bits (60), Expect = 9.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 175 KPDLVIYLTVSEAIRLQRLSRR 196
K D VI L V + ++RLS R
Sbjct: 103 KIDAVIELDVPDEELVERLSGR 124
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.131 0.365
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,984,052
Number of extensions: 1222587
Number of successful extensions: 1061
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1043
Number of HSP's successfully gapped: 73
Length of query: 259
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 164
Effective length of database: 6,723,972
Effective search space: 1102731408
Effective search space used: 1102731408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.1 bits)